Multiple sequence alignment - TraesCS5B01G221400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G221400 chr5B 100.000 5290 0 0 1 5290 395916417 395921706 0.000000e+00 9769.0
1 TraesCS5B01G221400 chr5D 96.647 4951 131 20 63 4997 337296373 337301304 0.000000e+00 8191.0
2 TraesCS5B01G221400 chr5D 92.089 316 16 3 4981 5288 337301335 337301649 2.260000e-118 436.0
3 TraesCS5B01G221400 chr5A 95.037 4876 197 21 1 4853 438466408 438471261 0.000000e+00 7622.0
4 TraesCS5B01G221400 chr5A 91.339 254 15 3 5041 5288 438471510 438471762 1.820000e-89 340.0
5 TraesCS5B01G221400 chr5A 93.443 61 4 0 1785 1845 673003016 673002956 2.030000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G221400 chr5B 395916417 395921706 5289 False 9769.0 9769 100.000 1 5290 1 chr5B.!!$F1 5289
1 TraesCS5B01G221400 chr5D 337296373 337301649 5276 False 4313.5 8191 94.368 63 5288 2 chr5D.!!$F1 5225
2 TraesCS5B01G221400 chr5A 438466408 438471762 5354 False 3981.0 7622 93.188 1 5288 2 chr5A.!!$F1 5287

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
608 612 0.551131 AATGCCACCTTCCTCCCTCT 60.551 55.000 0.00 0.0 0.00 3.69 F
613 617 1.553417 CCACCTTCCTCCCTCTCTTGA 60.553 57.143 0.00 0.0 0.00 3.02 F
1062 1067 2.432874 TGAAGAAACTCGAAGACCACCA 59.567 45.455 0.00 0.0 0.00 4.17 F
1436 1441 2.530701 CTCCTACCAGTTGGAGTCTGT 58.469 52.381 17.08 0.0 44.15 3.41 F
2910 2920 3.553511 GCAATGTGATAGGACTGTTCTCG 59.446 47.826 0.00 0.0 0.00 4.04 F
3218 3229 0.322008 GCCTTCCAGTCACTTCAGGG 60.322 60.000 0.00 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1436 1441 1.003646 TTTATTACCAGGGGCAGCCA 58.996 50.000 15.19 0.0 0.00 4.75 R
2416 2421 1.346395 AGACGACTATGTGGGCAAACA 59.654 47.619 0.00 0.0 0.00 2.83 R
2825 2835 4.535781 ACATGGCTATGCTTCAATTGGTA 58.464 39.130 10.37 0.0 37.85 3.25 R
3218 3229 1.544724 TTTCACAGCATACCCTTGCC 58.455 50.000 0.00 0.0 43.83 4.52 R
4176 4199 1.064060 GTACAACCGCTTCCATCATGC 59.936 52.381 0.00 0.0 0.00 4.06 R
4973 5108 1.135286 GGACTTTGCATTACAGCAGCC 60.135 52.381 0.00 0.0 46.54 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.470098 CAGCAATCCAGCCACACTTAC 59.530 52.381 0.00 0.00 34.23 2.34
41 42 1.078159 TCCAGCCACACTTACCTCCTA 59.922 52.381 0.00 0.00 0.00 2.94
45 46 1.405661 GCCACACTTACCTCCTACAGC 60.406 57.143 0.00 0.00 0.00 4.40
46 47 1.207329 CCACACTTACCTCCTACAGCC 59.793 57.143 0.00 0.00 0.00 4.85
47 48 1.207329 CACACTTACCTCCTACAGCCC 59.793 57.143 0.00 0.00 0.00 5.19
48 49 1.078989 ACACTTACCTCCTACAGCCCT 59.921 52.381 0.00 0.00 0.00 5.19
125 126 2.183478 TCGAGCAAGCCATCAAGAAA 57.817 45.000 0.00 0.00 0.00 2.52
152 153 4.082081 CCAATGTAGAGCCAGCAATGAAAA 60.082 41.667 0.00 0.00 0.00 2.29
157 158 2.961062 AGAGCCAGCAATGAAAACAACT 59.039 40.909 0.00 0.00 0.00 3.16
302 306 7.060633 GTCGTTTGCATCGAAGATTACAAAATT 59.939 33.333 14.33 0.00 45.12 1.82
549 553 4.775664 GCAATTTGCACAAAACATCTTCC 58.224 39.130 16.35 0.00 44.26 3.46
553 557 7.307870 GCAATTTGCACAAAACATCTTCCATTA 60.308 33.333 16.35 0.00 44.26 1.90
608 612 0.551131 AATGCCACCTTCCTCCCTCT 60.551 55.000 0.00 0.00 0.00 3.69
613 617 1.553417 CCACCTTCCTCCCTCTCTTGA 60.553 57.143 0.00 0.00 0.00 3.02
666 670 2.495155 TGGTCCAACCATGACATCTG 57.505 50.000 0.00 0.00 44.79 2.90
697 701 4.711949 AGGGAACAGCTGCCGCAG 62.712 66.667 15.27 16.47 41.46 5.18
778 783 6.039829 TGGTACATTGCTTAAACATGTTGACA 59.960 34.615 12.82 5.48 0.00 3.58
850 855 9.288576 TGTTTCAAGTGAATCTAGTTGAATGAT 57.711 29.630 12.77 0.00 44.79 2.45
851 856 9.766277 GTTTCAAGTGAATCTAGTTGAATGATC 57.234 33.333 12.77 0.00 44.79 2.92
888 893 5.064452 CCTAGTCTGATTGTTTGATGTCTGC 59.936 44.000 0.00 0.00 0.00 4.26
1059 1064 4.131649 TGTTGAAGAAACTCGAAGACCA 57.868 40.909 0.00 0.00 39.70 4.02
1062 1067 2.432874 TGAAGAAACTCGAAGACCACCA 59.567 45.455 0.00 0.00 0.00 4.17
1436 1441 2.530701 CTCCTACCAGTTGGAGTCTGT 58.469 52.381 17.08 0.00 44.15 3.41
1848 1853 6.865834 AGAGATGAACAGTTAGATTCTGGT 57.134 37.500 0.00 0.00 37.25 4.00
2091 2096 4.184629 CTCCTGTTGTTAGCTACATGGTC 58.815 47.826 0.00 0.00 36.44 4.02
2387 2392 8.739039 TGAATTTAGTGATGATAACTGTTTGGG 58.261 33.333 0.00 0.00 0.00 4.12
2468 2473 5.852827 AGAAGCCTATGATCTACTTCTTGC 58.147 41.667 0.00 0.00 43.36 4.01
2825 2835 6.875972 ACTTTCTACCATGTTCCTACTGAT 57.124 37.500 0.00 0.00 0.00 2.90
2910 2920 3.553511 GCAATGTGATAGGACTGTTCTCG 59.446 47.826 0.00 0.00 0.00 4.04
3218 3229 0.322008 GCCTTCCAGTCACTTCAGGG 60.322 60.000 0.00 0.00 0.00 4.45
3509 3530 6.380079 AAATCAAGTCTCCAACCATAGAGT 57.620 37.500 0.00 0.00 0.00 3.24
3551 3572 5.825679 GCATGGTTTACTACACCCATTCATA 59.174 40.000 0.00 0.00 35.53 2.15
3671 3692 3.141398 GCTATCGGATTGGCATGAAAGA 58.859 45.455 0.00 0.00 0.00 2.52
3776 3797 3.055094 GGTCCATGTGTCAGTAACTGGAT 60.055 47.826 0.00 0.00 35.41 3.41
3834 3855 7.773690 AGTTTGACCTTCAGTAAAGCTTAAGAA 59.226 33.333 6.67 1.12 25.87 2.52
3835 3856 8.568794 GTTTGACCTTCAGTAAAGCTTAAGAAT 58.431 33.333 6.67 0.00 31.73 2.40
3836 3857 9.787435 TTTGACCTTCAGTAAAGCTTAAGAATA 57.213 29.630 6.67 0.00 31.73 1.75
3837 3858 9.787435 TTGACCTTCAGTAAAGCTTAAGAATAA 57.213 29.630 6.67 0.00 31.73 1.40
3839 3860 9.654663 GACCTTCAGTAAAGCTTAAGAATAAGA 57.345 33.333 6.67 0.00 40.26 2.10
3869 3890 8.717821 TGATGGACTCGATTACAAAAGTTTAAG 58.282 33.333 0.00 0.00 0.00 1.85
3901 3922 1.064758 GCCATCCCACACTGTTATGGA 60.065 52.381 14.98 6.69 39.60 3.41
3914 3935 7.920151 CACACTGTTATGGAAAATTCTTGTCAA 59.080 33.333 0.00 0.00 0.00 3.18
4066 4088 1.656652 CCGCAGAACTGGAGGTATTG 58.343 55.000 3.99 0.00 0.00 1.90
4072 4094 4.521146 CAGAACTGGAGGTATTGCATTCT 58.479 43.478 0.00 0.00 30.84 2.40
4078 4100 4.641396 TGGAGGTATTGCATTCTATTCCG 58.359 43.478 0.00 0.00 0.00 4.30
4110 4132 6.253758 TCCTTCTAAGAAGTGACCATAGTGA 58.746 40.000 0.00 0.00 0.00 3.41
4125 4147 8.421002 TGACCATAGTGATCTGAATTTCGAATA 58.579 33.333 0.00 0.00 0.00 1.75
4172 4195 4.298332 GTGGTGAACTGGTGCTTAATTTG 58.702 43.478 0.00 0.00 0.00 2.32
4173 4196 3.957497 TGGTGAACTGGTGCTTAATTTGT 59.043 39.130 0.00 0.00 0.00 2.83
4176 4199 4.675114 GTGAACTGGTGCTTAATTTGTTCG 59.325 41.667 0.00 0.00 36.21 3.95
4184 4207 4.266029 GTGCTTAATTTGTTCGCATGATGG 59.734 41.667 0.00 0.00 32.75 3.51
4185 4208 4.157472 TGCTTAATTTGTTCGCATGATGGA 59.843 37.500 0.00 0.00 0.00 3.41
4226 4249 9.680315 GTACCTTACTAGTGCTATTGTATCTTG 57.320 37.037 5.39 0.00 0.00 3.02
4304 4327 4.044065 TCCAGATGAATTAACAACCTGGGT 59.956 41.667 0.00 0.00 0.00 4.51
4399 4423 2.423538 ACTGTGCAAACAGACAAGGAAC 59.576 45.455 12.57 0.00 39.99 3.62
4426 4450 7.739043 CCGTAGAGAAGAAATAACAAAACGAAC 59.261 37.037 0.00 0.00 0.00 3.95
4440 4464 8.703823 AACAAAACGAACGAGTATTAAACATC 57.296 30.769 0.14 0.00 0.00 3.06
4459 4483 2.825836 CCCTGCCGATCAAGGTGC 60.826 66.667 5.60 0.00 0.00 5.01
4487 4511 3.809279 TGTGCAGATAACAACTCACAGTG 59.191 43.478 0.00 0.00 31.73 3.66
4563 4588 1.486211 TAGTGCACTTCTAGCCCCTC 58.514 55.000 27.06 0.00 0.00 4.30
4564 4589 0.252467 AGTGCACTTCTAGCCCCTCT 60.252 55.000 15.25 0.00 0.00 3.69
4565 4590 0.176910 GTGCACTTCTAGCCCCTCTC 59.823 60.000 10.32 0.00 0.00 3.20
4566 4591 0.978146 TGCACTTCTAGCCCCTCTCC 60.978 60.000 0.00 0.00 0.00 3.71
4567 4592 1.691195 GCACTTCTAGCCCCTCTCCC 61.691 65.000 0.00 0.00 0.00 4.30
4568 4593 1.051556 CACTTCTAGCCCCTCTCCCC 61.052 65.000 0.00 0.00 0.00 4.81
4596 4621 7.119709 CCCCCTCTTTTAGTTTCTTTTCAAA 57.880 36.000 0.00 0.00 0.00 2.69
4743 4768 3.061831 CAGATTTTGTAGCTGTGCTCTCG 59.938 47.826 0.00 0.00 40.44 4.04
4896 4927 6.072618 GGTGGATATCAGAATTCTGCTTCATG 60.073 42.308 27.45 6.44 43.46 3.07
4990 5125 0.799534 GCGGCTGCTGTAATGCAAAG 60.800 55.000 11.21 0.00 42.83 2.77
5035 5224 6.119536 TGATGGTTTGGTGAATACTGGTATC 58.880 40.000 0.00 0.00 0.00 2.24
5039 5228 5.497474 GTTTGGTGAATACTGGTATCCTGT 58.503 41.667 4.00 4.00 39.06 4.00
5057 5247 7.921041 ATCCTGTTTATCCTCAGTCTGAATA 57.079 36.000 3.67 0.00 0.00 1.75
5068 5258 8.740123 TCCTCAGTCTGAATACTACTCTTAAG 57.260 38.462 3.67 0.00 0.00 1.85
5099 5289 6.346518 CGTTCAAAAATCAAGTAAATGCACCC 60.347 38.462 0.00 0.00 0.00 4.61
5103 5293 3.848272 ATCAAGTAAATGCACCCGTTG 57.152 42.857 0.00 0.00 0.00 4.10
5156 5346 3.868619 AACTTACCAGCTACCCACAAA 57.131 42.857 0.00 0.00 0.00 2.83
5288 5483 7.232945 ACACAAAACATAGCATGAACAAAAC 57.767 32.000 0.00 0.00 0.00 2.43
5289 5484 6.815641 ACACAAAACATAGCATGAACAAAACA 59.184 30.769 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 0.543749 CTTTGGAGGGCTGTAGGAGG 59.456 60.000 0.00 0.00 0.00 4.30
41 42 2.629617 CACATTTTCTTTGGAGGGCTGT 59.370 45.455 0.00 0.00 0.00 4.40
45 46 2.892852 TGAGCACATTTTCTTTGGAGGG 59.107 45.455 0.00 0.00 0.00 4.30
46 47 4.491676 CATGAGCACATTTTCTTTGGAGG 58.508 43.478 0.00 0.00 34.15 4.30
47 48 3.924686 GCATGAGCACATTTTCTTTGGAG 59.075 43.478 0.00 0.00 41.58 3.86
48 49 3.916761 GCATGAGCACATTTTCTTTGGA 58.083 40.909 0.00 0.00 41.58 3.53
125 126 4.712051 TTGCTGGCTCTACATTGGATAT 57.288 40.909 0.00 0.00 0.00 1.63
152 153 5.539048 AGCGTAAGAAGTATGACAAGTTGT 58.461 37.500 8.61 8.61 43.02 3.32
157 158 6.394809 TGATGAAGCGTAAGAAGTATGACAA 58.605 36.000 0.00 0.00 43.02 3.18
302 306 2.083774 GAACCAGGAACATGCATCGAA 58.916 47.619 0.00 0.00 0.00 3.71
559 563 7.935755 AGATGCACTGCTCATACACTAATAAAT 59.064 33.333 1.98 0.00 0.00 1.40
608 612 9.560860 TTATATAATGGAGGCTCCTAATCAAGA 57.439 33.333 32.28 11.66 37.46 3.02
613 617 9.567702 AGAAGTTATATAATGGAGGCTCCTAAT 57.432 33.333 32.28 23.23 37.46 1.73
660 664 2.301296 CTCAACCCTCTCACACAGATGT 59.699 50.000 0.00 0.00 40.80 3.06
666 670 1.056660 TTCCCTCAACCCTCTCACAC 58.943 55.000 0.00 0.00 0.00 3.82
697 701 2.940158 ACCCACTTCCAGTACAAAACC 58.060 47.619 0.00 0.00 0.00 3.27
778 783 7.875554 ACACACAAAAACCAAGAAAAATACAGT 59.124 29.630 0.00 0.00 0.00 3.55
850 855 4.532126 TCAGACTAGGCCAAATGAAGAAGA 59.468 41.667 5.01 0.00 0.00 2.87
851 856 4.836825 TCAGACTAGGCCAAATGAAGAAG 58.163 43.478 5.01 0.00 0.00 2.85
888 893 2.093075 AGATCTGCAGAAGGTCCACATG 60.093 50.000 22.50 0.00 36.60 3.21
1062 1067 9.020105 GCATTATGCTTCTCAGATGGAACAAGT 62.020 40.741 10.27 0.00 41.20 3.16
1436 1441 1.003646 TTTATTACCAGGGGCAGCCA 58.996 50.000 15.19 0.00 0.00 4.75
1848 1853 6.367695 CCGTTGTCTGTGAATAAACATCACTA 59.632 38.462 8.01 0.00 45.81 2.74
2091 2096 5.705609 TTTTCTTTCCCTTTCTTGGATCG 57.294 39.130 0.00 0.00 0.00 3.69
2416 2421 1.346395 AGACGACTATGTGGGCAAACA 59.654 47.619 0.00 0.00 0.00 2.83
2480 2485 7.923414 AAGTTCACAAGAAAAGTACAGAAGT 57.077 32.000 0.00 0.00 35.08 3.01
2484 2489 9.274065 GTAACAAAGTTCACAAGAAAAGTACAG 57.726 33.333 0.00 0.00 35.08 2.74
2825 2835 4.535781 ACATGGCTATGCTTCAATTGGTA 58.464 39.130 10.37 0.00 37.85 3.25
2910 2920 5.342259 GTGTTCGAATTTGCCATGTAAGAAC 59.658 40.000 0.00 0.00 36.83 3.01
3084 3095 7.517614 TCTGAACCACAATAACAGCAAATTA 57.482 32.000 0.00 0.00 0.00 1.40
3088 3099 5.771469 CAATCTGAACCACAATAACAGCAA 58.229 37.500 0.00 0.00 0.00 3.91
3218 3229 1.544724 TTTCACAGCATACCCTTGCC 58.455 50.000 0.00 0.00 43.83 4.52
3509 3530 4.458989 CCATGCCACAAGTAAAAGAGCTTA 59.541 41.667 0.00 0.00 0.00 3.09
3527 3548 4.013728 TGAATGGGTGTAGTAAACCATGC 58.986 43.478 11.78 6.21 42.60 4.06
3551 3572 2.869233 ACTTGCGTGCAATTCTTGTT 57.131 40.000 7.85 0.00 35.20 2.83
3659 3680 5.336150 TGAAAACAAGTCTTTCATGCCAA 57.664 34.783 0.00 0.00 37.76 4.52
3713 3734 9.118236 GCTTTATTCATAGTTTGTTTGTGACTC 57.882 33.333 0.00 0.00 0.00 3.36
3776 3797 1.110442 CAAGGGTGTGCACAAAAGGA 58.890 50.000 23.59 0.00 0.00 3.36
3836 3857 9.613428 TTTTGTAATCGAGTCCATCAATATCTT 57.387 29.630 0.00 0.00 0.00 2.40
3837 3858 9.265901 CTTTTGTAATCGAGTCCATCAATATCT 57.734 33.333 0.00 0.00 0.00 1.98
3839 3860 8.964476 ACTTTTGTAATCGAGTCCATCAATAT 57.036 30.769 0.00 0.00 0.00 1.28
3840 3861 8.786826 AACTTTTGTAATCGAGTCCATCAATA 57.213 30.769 0.00 0.00 0.00 1.90
3841 3862 7.687941 AACTTTTGTAATCGAGTCCATCAAT 57.312 32.000 0.00 0.00 0.00 2.57
3842 3863 7.504924 AAACTTTTGTAATCGAGTCCATCAA 57.495 32.000 0.00 0.00 0.00 2.57
3843 3864 8.610248 TTAAACTTTTGTAATCGAGTCCATCA 57.390 30.769 0.00 0.00 0.00 3.07
3844 3865 8.932791 TCTTAAACTTTTGTAATCGAGTCCATC 58.067 33.333 0.00 0.00 0.00 3.51
3855 3876 9.863845 CCTTTCTTGGTTCTTAAACTTTTGTAA 57.136 29.630 0.00 0.00 35.61 2.41
3869 3890 1.186200 GGGATGGCCTTTCTTGGTTC 58.814 55.000 3.32 0.00 0.00 3.62
3914 3935 5.239525 GCTCCAAGTCAGTTAAAACAGTCAT 59.760 40.000 0.00 0.00 0.00 3.06
3969 3990 3.330267 ACTGAAAGCTCCGAGATCAAAC 58.670 45.455 0.00 0.00 37.60 2.93
4066 4088 5.059833 AGGAATGTCTTCGGAATAGAATGC 58.940 41.667 0.00 0.00 31.75 3.56
4072 4094 7.655521 TCTTAGAAGGAATGTCTTCGGAATA 57.344 36.000 0.00 0.00 45.60 1.75
4078 4100 6.592220 GGTCACTTCTTAGAAGGAATGTCTTC 59.408 42.308 23.72 6.66 42.43 2.87
4125 4147 8.695456 ACCAATCAGAGAAACACATTTACTTTT 58.305 29.630 0.00 0.00 0.00 2.27
4129 4151 6.016276 ACCACCAATCAGAGAAACACATTTAC 60.016 38.462 0.00 0.00 0.00 2.01
4130 4152 6.016360 CACCACCAATCAGAGAAACACATTTA 60.016 38.462 0.00 0.00 0.00 1.40
4176 4199 1.064060 GTACAACCGCTTCCATCATGC 59.936 52.381 0.00 0.00 0.00 4.06
4184 4207 2.064014 GGTACTGTGTACAACCGCTTC 58.936 52.381 0.00 0.00 0.00 3.86
4185 4208 1.690352 AGGTACTGTGTACAACCGCTT 59.310 47.619 8.47 0.00 37.18 4.68
4189 4212 6.385033 CACTAGTAAGGTACTGTGTACAACC 58.615 44.000 6.37 6.37 40.86 3.77
4226 4249 3.319689 GGCTAGACTCCTGTACCTGATTC 59.680 52.174 0.00 0.00 0.00 2.52
4281 4304 4.044065 ACCCAGGTTGTTAATTCATCTGGA 59.956 41.667 10.85 0.00 39.32 3.86
4399 4423 6.366877 TCGTTTTGTTATTTCTTCTCTACGGG 59.633 38.462 0.00 0.00 0.00 5.28
4426 4450 3.139077 GCAGGGGGATGTTTAATACTCG 58.861 50.000 0.00 0.00 0.00 4.18
4459 4483 2.674852 AGTTGTTATCTGCACAGCATCG 59.325 45.455 0.00 0.00 38.13 3.84
4596 4621 2.291605 GGAAAAGAATGGGGCACTACCT 60.292 50.000 0.00 0.00 39.10 3.08
4664 4689 9.061435 CCATATCTTTCAGTATCTTTTTCCCTC 57.939 37.037 0.00 0.00 0.00 4.30
4743 4768 1.958579 GGGGTTGGTTAAGGTGACAAC 59.041 52.381 0.00 0.00 41.71 3.32
4863 4894 7.069085 CAGAATTCTGATATCCACCAAACCATT 59.931 37.037 28.13 0.00 46.59 3.16
4896 4927 6.280643 ACTTTAAACTTGGAACTGGAAATGC 58.719 36.000 0.00 0.00 0.00 3.56
4902 4933 7.095695 TCAAAGACTTTAAACTTGGAACTGG 57.904 36.000 0.00 0.00 0.00 4.00
4973 5108 1.135286 GGACTTTGCATTACAGCAGCC 60.135 52.381 0.00 0.00 46.54 4.85
4990 5125 9.520204 CCATCATAAATGTACAATTCAAAGGAC 57.480 33.333 0.00 0.00 0.00 3.85
5035 5224 7.118496 AGTATTCAGACTGAGGATAAACAGG 57.882 40.000 5.10 0.00 0.00 4.00
5039 5228 9.702253 AAGAGTAGTATTCAGACTGAGGATAAA 57.298 33.333 5.10 0.00 0.00 1.40
5057 5247 8.652810 TTTTGAACGTAAAGCTTAAGAGTAGT 57.347 30.769 6.67 0.00 0.00 2.73
5068 5258 9.777843 CATTTACTTGATTTTTGAACGTAAAGC 57.222 29.630 0.00 0.00 31.48 3.51
5084 5274 2.577700 ACAACGGGTGCATTTACTTGA 58.422 42.857 0.00 0.00 0.00 3.02
5099 5289 5.109903 AGCCTAATGTAGCTAAGAACAACG 58.890 41.667 0.00 0.00 37.64 4.10
5103 5293 7.793927 ATCAAAGCCTAATGTAGCTAAGAAC 57.206 36.000 0.00 0.00 38.74 3.01
5156 5346 4.136796 TGTGTTTTAGCTGTGATTGCTCT 58.863 39.130 0.00 0.00 41.46 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.