Multiple sequence alignment - TraesCS5B01G220400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G220400 chr5B 100.000 6285 0 0 1 6285 394748790 394742506 0.000000e+00 11607.0
1 TraesCS5B01G220400 chr5B 85.567 97 12 2 4411 4506 585475625 585475720 4.010000e-17 100.0
2 TraesCS5B01G220400 chr5D 91.044 1954 76 27 4366 6285 336423225 336421337 0.000000e+00 2547.0
3 TraesCS5B01G220400 chr5D 88.972 1469 63 44 419 1868 336426803 336425415 0.000000e+00 1724.0
4 TraesCS5B01G220400 chr5D 86.709 1565 99 56 2856 4349 336424737 336423211 0.000000e+00 1637.0
5 TraesCS5B01G220400 chr5D 91.190 420 33 4 1 419 336427783 336427367 9.140000e-158 568.0
6 TraesCS5B01G220400 chr5A 92.033 1205 61 19 4366 5543 437913654 437912458 0.000000e+00 1661.0
7 TraesCS5B01G220400 chr5A 84.804 1224 71 54 687 1867 437916912 437915761 0.000000e+00 1123.0
8 TraesCS5B01G220400 chr5A 88.338 746 55 15 2869 3601 437915188 437914462 0.000000e+00 867.0
9 TraesCS5B01G220400 chr5A 90.127 628 27 11 5661 6274 437912426 437911820 0.000000e+00 784.0
10 TraesCS5B01G220400 chr5A 85.006 787 62 21 3603 4349 437914410 437913640 0.000000e+00 749.0
11 TraesCS5B01G220400 chr5A 84.321 574 46 13 1 572 437917509 437916978 7.220000e-144 521.0
12 TraesCS5B01G220400 chr5A 83.333 216 26 7 2509 2717 437915453 437915241 2.310000e-44 191.0
13 TraesCS5B01G220400 chr5A 85.950 121 15 2 2163 2282 437915752 437915633 1.840000e-25 128.0
14 TraesCS5B01G220400 chr5A 87.629 97 10 2 4411 4506 597256908 597257003 1.850000e-20 111.0
15 TraesCS5B01G220400 chr3B 97.959 294 6 0 1868 2161 697133100 697132807 1.560000e-140 510.0
16 TraesCS5B01G220400 chr3B 98.606 287 4 0 1874 2160 133387754 133388040 5.620000e-140 508.0
17 TraesCS5B01G220400 chr2B 97.595 291 7 0 1870 2160 67537266 67537556 3.380000e-137 499.0
18 TraesCS5B01G220400 chr7B 97.586 290 7 0 1872 2161 60066374 60066663 1.220000e-136 497.0
19 TraesCS5B01G220400 chr7B 97.241 290 8 0 1872 2161 519787229 519786940 5.660000e-135 492.0
20 TraesCS5B01G220400 chr1B 96.939 294 9 0 1868 2161 100311045 100311338 1.570000e-135 494.0
21 TraesCS5B01G220400 chr1B 97.241 290 8 0 1872 2161 94957392 94957681 5.660000e-135 492.0
22 TraesCS5B01G220400 chr1B 87.059 85 11 0 3050 3134 604834784 604834700 5.190000e-16 97.1
23 TraesCS5B01G220400 chrUn 97.561 287 7 0 1874 2160 50779917 50779631 5.660000e-135 492.0
24 TraesCS5B01G220400 chr1A 97.561 287 7 0 1874 2160 513746124 513746410 5.660000e-135 492.0
25 TraesCS5B01G220400 chr1A 85.882 85 12 0 3050 3134 540134983 540134899 2.410000e-14 91.6
26 TraesCS5B01G220400 chr7D 93.506 77 5 0 3052 3128 54437990 54437914 1.430000e-21 115.0
27 TraesCS5B01G220400 chr4A 93.506 77 5 0 3052 3128 670146691 670146615 1.430000e-21 115.0
28 TraesCS5B01G220400 chr7A 92.208 77 6 0 3052 3128 57979309 57979233 6.660000e-20 110.0
29 TraesCS5B01G220400 chr6D 92.857 70 5 0 1296 1365 82560165 82560096 1.110000e-17 102.0
30 TraesCS5B01G220400 chr1D 85.882 85 12 0 3050 3134 444846135 444846051 2.410000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G220400 chr5B 394742506 394748790 6284 True 11607 11607 100.00000 1 6285 1 chr5B.!!$R1 6284
1 TraesCS5B01G220400 chr5D 336421337 336427783 6446 True 1619 2547 89.47875 1 6285 4 chr5D.!!$R1 6284
2 TraesCS5B01G220400 chr5A 437911820 437917509 5689 True 753 1661 86.73900 1 6274 8 chr5A.!!$R1 6273

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
114 115 0.393448 TGTGCTAGTGGTGCCGTTAA 59.607 50.000 0.00 0.0 0.00 2.01 F
1505 2105 0.108898 TGCTGTTGTTGTTGGTGCAC 60.109 50.000 8.80 8.8 0.00 4.57 F
2075 2694 0.103390 GAGCCCGCTTACCTTCTCTC 59.897 60.000 0.00 0.0 0.00 3.20 F
2077 2696 0.103390 GCCCGCTTACCTTCTCTCTC 59.897 60.000 0.00 0.0 0.00 3.20 F
3454 4230 0.322975 CACAGTCCAGCTTAGTGCCT 59.677 55.000 1.32 0.0 44.23 4.75 F
4050 4893 0.759346 ACTTCAACTTCCAGCGGTCT 59.241 50.000 0.00 0.0 0.00 3.85 F
4349 5243 0.996727 AACGAAAAATGCTGCGTCGC 60.997 50.000 11.10 11.1 35.74 5.19 F
5085 5982 1.269569 CCAGACTGATACGCGCCATTA 60.270 52.381 5.73 0.0 0.00 1.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1582 2182 0.037975 TTTAACGGCGAGGGAGTGAC 60.038 55.000 16.62 0.00 0.00 3.67 R
3434 4210 0.321671 GGCACTAAGCTGGACTGTGA 59.678 55.000 0.00 0.00 44.79 3.58 R
3435 4211 0.322975 AGGCACTAAGCTGGACTGTG 59.677 55.000 0.00 0.00 44.79 3.66 R
3458 4234 0.804364 CGCTTGTGCTTAATGAGGCA 59.196 50.000 0.00 0.00 36.97 4.75 R
5058 5955 0.179100 CGTATCAGTCTGGCCAGTGG 60.179 60.000 31.58 21.09 0.00 4.00 R
5101 5998 0.338120 GACAAAATCCCCCATCCCCA 59.662 55.000 0.00 0.00 0.00 4.96 R
5180 6077 0.894141 CAGTCCTCACTAGCTGCACT 59.106 55.000 1.02 0.00 0.00 4.40 R
6201 7141 2.049063 AGCGCGAGACAAGACCAC 60.049 61.111 12.10 0.00 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.493708 CGAGTCTTAGCTTTGATCGTACGA 60.494 45.833 21.93 21.93 0.00 3.43
114 115 0.393448 TGTGCTAGTGGTGCCGTTAA 59.607 50.000 0.00 0.00 0.00 2.01
116 117 0.682852 TGCTAGTGGTGCCGTTAAGT 59.317 50.000 0.00 0.00 0.00 2.24
121 122 1.626825 AGTGGTGCCGTTAAGTGGTAT 59.373 47.619 0.00 0.00 0.00 2.73
127 128 3.068560 TGCCGTTAAGTGGTATTGACAC 58.931 45.455 0.00 0.00 39.10 3.67
137 138 0.796312 GTATTGACACTGCACCCGTG 59.204 55.000 3.20 3.20 38.32 4.94
149 151 2.661997 CCCGTGGGGCCAAAAATG 59.338 61.111 4.39 0.00 35.35 2.32
189 191 2.772077 TTAAGGCGGTAGTGATTGCA 57.228 45.000 0.00 0.00 0.00 4.08
232 234 2.030363 TGCCAAGCCAAAGTTTGATACG 60.030 45.455 17.33 1.31 36.37 3.06
313 315 3.126831 CAGAGCAATGTAATCTCCGTCC 58.873 50.000 0.00 0.00 0.00 4.79
319 322 1.874129 TGTAATCTCCGTCCCATGGT 58.126 50.000 11.73 0.00 0.00 3.55
329 332 0.879090 GTCCCATGGTTTTCACGACC 59.121 55.000 11.73 0.00 37.69 4.79
341 344 5.277442 GGTTTTCACGACCATTTTCTTACGA 60.277 40.000 0.00 0.00 37.14 3.43
391 394 5.691305 CACAATTCATTGACCACATTCGTTT 59.309 36.000 6.53 0.00 40.14 3.60
393 396 5.964958 ATTCATTGACCACATTCGTTTCT 57.035 34.783 0.00 0.00 0.00 2.52
451 1017 3.498927 AGCATCAACAGTGCATTTAGC 57.501 42.857 0.00 0.00 44.87 3.09
679 1247 2.956987 GCAAACACCAGCGCTCAT 59.043 55.556 7.13 0.00 0.00 2.90
680 1248 1.443194 GCAAACACCAGCGCTCATG 60.443 57.895 7.13 11.87 0.00 3.07
681 1249 1.443194 CAAACACCAGCGCTCATGC 60.443 57.895 7.13 0.00 0.00 4.06
682 1250 2.629656 AAACACCAGCGCTCATGCC 61.630 57.895 7.13 0.00 35.36 4.40
683 1251 3.557903 AACACCAGCGCTCATGCCT 62.558 57.895 7.13 0.00 35.36 4.75
684 1252 3.506096 CACCAGCGCTCATGCCTG 61.506 66.667 7.13 0.00 37.29 4.85
685 1253 3.709633 ACCAGCGCTCATGCCTGA 61.710 61.111 7.13 0.00 38.72 3.86
702 1270 1.142097 GAACCAGCGCTAGACCCTC 59.858 63.158 10.99 0.00 0.00 4.30
756 1324 1.228063 CGGCCAATCAGATCAGGGG 60.228 63.158 2.24 0.00 0.00 4.79
788 1366 3.500642 CTGTCCGAGCGAGCGAGA 61.501 66.667 0.00 0.00 0.00 4.04
894 1472 4.845307 CCCCTCCCCTCCTTCCCC 62.845 77.778 0.00 0.00 0.00 4.81
982 1562 2.204151 CCACCCAACCTCCCTCCT 60.204 66.667 0.00 0.00 0.00 3.69
983 1563 1.852626 CCACCCAACCTCCCTCCTT 60.853 63.158 0.00 0.00 0.00 3.36
985 1565 1.541620 ACCCAACCTCCCTCCTTCC 60.542 63.158 0.00 0.00 0.00 3.46
991 1571 2.787866 CTCCCTCCTTCCCCCTCA 59.212 66.667 0.00 0.00 0.00 3.86
1001 1581 4.024984 CCCCCTCACTCCCTCCCA 62.025 72.222 0.00 0.00 0.00 4.37
1049 1629 1.150536 AAAGCCCCGCAAGAACTCA 59.849 52.632 0.00 0.00 43.02 3.41
1091 1671 3.846754 GCAAACAGCAACGCCATC 58.153 55.556 0.00 0.00 44.79 3.51
1092 1672 2.082366 GCAAACAGCAACGCCATCG 61.082 57.895 0.00 0.00 44.79 3.84
1093 1673 2.082366 CAAACAGCAACGCCATCGC 61.082 57.895 0.00 0.00 39.84 4.58
1094 1674 3.267597 AAACAGCAACGCCATCGCC 62.268 57.895 0.00 0.00 39.84 5.54
1219 1799 2.434134 GCGTCACACGGTAAGCTCG 61.434 63.158 0.00 0.00 42.82 5.03
1225 1805 4.493747 ACGGTAAGCTCGCTCGCC 62.494 66.667 0.00 0.00 0.00 5.54
1226 1806 4.492160 CGGTAAGCTCGCTCGCCA 62.492 66.667 10.74 0.00 0.00 5.69
1227 1807 2.583593 GGTAAGCTCGCTCGCCAG 60.584 66.667 0.00 0.00 0.00 4.85
1242 1822 4.504916 CAGCCAGTCTCGCCCGAG 62.505 72.222 11.24 11.24 43.21 4.63
1270 1850 3.342627 CAACCGAACGCGCTTCCA 61.343 61.111 5.73 0.00 35.83 3.53
1285 1875 2.935238 GCTTCCAGTCATGCTAACGGAA 60.935 50.000 0.00 0.00 32.44 4.30
1389 1979 4.316025 AGAAGGGCAAGCAAGGTAATTA 57.684 40.909 0.00 0.00 0.00 1.40
1390 1980 4.672899 AGAAGGGCAAGCAAGGTAATTAA 58.327 39.130 0.00 0.00 0.00 1.40
1391 1981 4.462834 AGAAGGGCAAGCAAGGTAATTAAC 59.537 41.667 0.00 0.00 0.00 2.01
1424 2014 1.683917 CCGCTAGCTAATCACTCCACT 59.316 52.381 13.93 0.00 0.00 4.00
1429 2019 1.484240 AGCTAATCACTCCACTGGCTC 59.516 52.381 0.00 0.00 0.00 4.70
1433 2023 1.608717 ATCACTCCACTGGCTCCGTC 61.609 60.000 0.00 0.00 0.00 4.79
1444 2034 0.739561 GGCTCCGTCATTAGTCGACT 59.260 55.000 23.66 23.66 0.00 4.18
1476 2070 2.030946 CCGCATCTTCCTGACGATTTTC 59.969 50.000 0.00 0.00 0.00 2.29
1480 2074 1.066430 TCTTCCTGACGATTTTCCCCG 60.066 52.381 0.00 0.00 0.00 5.73
1481 2075 0.688487 TTCCTGACGATTTTCCCCGT 59.312 50.000 0.00 0.00 42.17 5.28
1505 2105 0.108898 TGCTGTTGTTGTTGGTGCAC 60.109 50.000 8.80 8.80 0.00 4.57
1582 2182 4.087892 CTCCACCACTGCCCCTCG 62.088 72.222 0.00 0.00 0.00 4.63
1588 2188 2.262915 CACTGCCCCTCGTCACTC 59.737 66.667 0.00 0.00 0.00 3.51
1645 2245 4.101448 CCTGCTGCCGGGCTAACT 62.101 66.667 21.46 0.00 0.00 2.24
1762 2366 0.831307 ATCCTCAACTTCCCGGTAGC 59.169 55.000 0.00 0.00 0.00 3.58
1868 2487 2.223386 CGCTAGCACAGGAGTAGAAGTC 60.223 54.545 16.45 0.00 0.00 3.01
1870 2489 3.066203 GCTAGCACAGGAGTAGAAGTCTC 59.934 52.174 10.63 0.00 0.00 3.36
1874 2493 4.947388 AGCACAGGAGTAGAAGTCTCTAAG 59.053 45.833 0.00 0.00 35.89 2.18
1875 2494 4.944930 GCACAGGAGTAGAAGTCTCTAAGA 59.055 45.833 0.00 0.00 35.89 2.10
1876 2495 5.065988 GCACAGGAGTAGAAGTCTCTAAGAG 59.934 48.000 0.00 0.00 35.89 2.85
1877 2496 5.065988 CACAGGAGTAGAAGTCTCTAAGAGC 59.934 48.000 0.00 0.00 35.89 4.09
1878 2497 5.189928 CAGGAGTAGAAGTCTCTAAGAGCA 58.810 45.833 0.00 0.00 35.89 4.26
1879 2498 5.827797 CAGGAGTAGAAGTCTCTAAGAGCAT 59.172 44.000 0.00 0.00 35.89 3.79
1880 2499 5.827797 AGGAGTAGAAGTCTCTAAGAGCATG 59.172 44.000 0.00 0.00 35.89 4.06
1881 2500 5.009610 GGAGTAGAAGTCTCTAAGAGCATGG 59.990 48.000 0.00 0.00 35.89 3.66
1882 2501 5.515106 AGTAGAAGTCTCTAAGAGCATGGT 58.485 41.667 0.00 0.00 35.89 3.55
1883 2502 5.955355 AGTAGAAGTCTCTAAGAGCATGGTT 59.045 40.000 0.00 0.00 35.89 3.67
1884 2503 7.120051 AGTAGAAGTCTCTAAGAGCATGGTTA 58.880 38.462 0.00 0.00 35.89 2.85
1885 2504 6.859112 AGAAGTCTCTAAGAGCATGGTTAA 57.141 37.500 0.00 0.00 0.00 2.01
1886 2505 7.430760 AGAAGTCTCTAAGAGCATGGTTAAT 57.569 36.000 0.00 0.00 0.00 1.40
1887 2506 8.540507 AGAAGTCTCTAAGAGCATGGTTAATA 57.459 34.615 0.00 0.00 0.00 0.98
1888 2507 8.637986 AGAAGTCTCTAAGAGCATGGTTAATAG 58.362 37.037 0.00 2.79 0.00 1.73
1889 2508 7.906199 AGTCTCTAAGAGCATGGTTAATAGT 57.094 36.000 0.00 0.00 0.00 2.12
1890 2509 8.998277 AGTCTCTAAGAGCATGGTTAATAGTA 57.002 34.615 0.00 0.00 0.00 1.82
1891 2510 9.594936 AGTCTCTAAGAGCATGGTTAATAGTAT 57.405 33.333 0.00 0.00 0.00 2.12
1894 2513 9.796120 CTCTAAGAGCATGGTTAATAGTATAGC 57.204 37.037 0.00 0.00 0.00 2.97
1895 2514 8.750298 TCTAAGAGCATGGTTAATAGTATAGCC 58.250 37.037 0.00 0.00 0.00 3.93
1896 2515 6.935240 AGAGCATGGTTAATAGTATAGCCA 57.065 37.500 0.00 3.65 39.96 4.75
1897 2516 6.940739 AGAGCATGGTTAATAGTATAGCCAG 58.059 40.000 0.00 2.11 39.18 4.85
1898 2517 5.491982 AGCATGGTTAATAGTATAGCCAGC 58.508 41.667 0.00 8.73 39.18 4.85
1899 2518 5.249393 AGCATGGTTAATAGTATAGCCAGCT 59.751 40.000 0.00 0.00 39.18 4.24
1900 2519 5.352569 GCATGGTTAATAGTATAGCCAGCTG 59.647 44.000 6.78 6.78 39.18 4.24
1901 2520 4.894784 TGGTTAATAGTATAGCCAGCTGC 58.105 43.478 8.66 3.91 41.71 5.25
1925 2544 3.797039 GCTATAAGCCAGTGACATGTCA 58.203 45.455 24.56 24.56 34.48 3.58
1926 2545 4.384056 GCTATAAGCCAGTGACATGTCAT 58.616 43.478 30.10 16.16 37.30 3.06
1927 2546 4.450419 GCTATAAGCCAGTGACATGTCATC 59.550 45.833 30.10 22.09 37.30 2.92
1928 2547 4.767578 ATAAGCCAGTGACATGTCATCT 57.232 40.909 30.10 23.72 42.18 2.90
1929 2548 5.876651 ATAAGCCAGTGACATGTCATCTA 57.123 39.130 30.10 15.29 42.18 1.98
1930 2549 3.533606 AGCCAGTGACATGTCATCTAC 57.466 47.619 30.10 19.64 42.18 2.59
1931 2550 2.833943 AGCCAGTGACATGTCATCTACA 59.166 45.455 30.10 5.13 42.18 2.74
1932 2551 3.261643 AGCCAGTGACATGTCATCTACAA 59.738 43.478 30.10 3.63 42.70 2.41
1933 2552 4.080695 AGCCAGTGACATGTCATCTACAAT 60.081 41.667 30.10 11.58 42.70 2.71
1934 2553 4.272018 GCCAGTGACATGTCATCTACAATC 59.728 45.833 30.10 15.14 42.70 2.67
1935 2554 4.813161 CCAGTGACATGTCATCTACAATCC 59.187 45.833 30.10 14.45 42.70 3.01
1936 2555 5.422145 CAGTGACATGTCATCTACAATCCA 58.578 41.667 30.10 1.43 42.70 3.41
1937 2556 6.053650 CAGTGACATGTCATCTACAATCCAT 58.946 40.000 30.10 4.06 42.70 3.41
1938 2557 6.202379 CAGTGACATGTCATCTACAATCCATC 59.798 42.308 30.10 13.08 42.70 3.51
1939 2558 6.099413 AGTGACATGTCATCTACAATCCATCT 59.901 38.462 30.10 15.03 42.70 2.90
1940 2559 6.765036 GTGACATGTCATCTACAATCCATCTT 59.235 38.462 30.10 0.00 42.70 2.40
1941 2560 7.928167 GTGACATGTCATCTACAATCCATCTTA 59.072 37.037 30.10 0.00 42.70 2.10
1942 2561 8.654094 TGACATGTCATCTACAATCCATCTTAT 58.346 33.333 24.56 0.00 42.70 1.73
1945 2564 9.096160 CATGTCATCTACAATCCATCTTATAGC 57.904 37.037 0.00 0.00 42.70 2.97
1946 2565 7.615403 TGTCATCTACAATCCATCTTATAGCC 58.385 38.462 0.00 0.00 34.29 3.93
1947 2566 7.235399 TGTCATCTACAATCCATCTTATAGCCA 59.765 37.037 0.00 0.00 34.29 4.75
1948 2567 8.097038 GTCATCTACAATCCATCTTATAGCCAA 58.903 37.037 0.00 0.00 0.00 4.52
1949 2568 8.097038 TCATCTACAATCCATCTTATAGCCAAC 58.903 37.037 0.00 0.00 0.00 3.77
1950 2569 7.373617 TCTACAATCCATCTTATAGCCAACA 57.626 36.000 0.00 0.00 0.00 3.33
1951 2570 7.977818 TCTACAATCCATCTTATAGCCAACAT 58.022 34.615 0.00 0.00 0.00 2.71
1952 2571 6.889301 ACAATCCATCTTATAGCCAACATG 57.111 37.500 0.00 0.00 0.00 3.21
1953 2572 6.367983 ACAATCCATCTTATAGCCAACATGT 58.632 36.000 0.00 0.00 0.00 3.21
1954 2573 7.517320 ACAATCCATCTTATAGCCAACATGTA 58.483 34.615 0.00 0.00 0.00 2.29
1955 2574 8.166061 ACAATCCATCTTATAGCCAACATGTAT 58.834 33.333 0.00 0.00 0.00 2.29
1956 2575 9.671279 CAATCCATCTTATAGCCAACATGTATA 57.329 33.333 0.00 0.00 0.00 1.47
2006 2625 5.669164 TTTTATTATGTGGCCCACCTTTC 57.331 39.130 12.25 0.00 36.63 2.62
2007 2626 2.917713 ATTATGTGGCCCACCTTTCA 57.082 45.000 12.25 0.00 36.63 2.69
2008 2627 2.917713 TTATGTGGCCCACCTTTCAT 57.082 45.000 12.25 0.00 36.63 2.57
2009 2628 2.917713 TATGTGGCCCACCTTTCATT 57.082 45.000 12.25 0.00 36.63 2.57
2010 2629 1.560505 ATGTGGCCCACCTTTCATTC 58.439 50.000 12.25 0.00 36.63 2.67
2011 2630 0.482446 TGTGGCCCACCTTTCATTCT 59.518 50.000 12.25 0.00 36.63 2.40
2012 2631 1.177401 GTGGCCCACCTTTCATTCTC 58.823 55.000 1.17 0.00 36.63 2.87
2013 2632 0.776810 TGGCCCACCTTTCATTCTCA 59.223 50.000 0.00 0.00 36.63 3.27
2014 2633 1.177401 GGCCCACCTTTCATTCTCAC 58.823 55.000 0.00 0.00 0.00 3.51
2015 2634 1.547675 GGCCCACCTTTCATTCTCACA 60.548 52.381 0.00 0.00 0.00 3.58
2016 2635 2.238521 GCCCACCTTTCATTCTCACAA 58.761 47.619 0.00 0.00 0.00 3.33
2017 2636 2.627699 GCCCACCTTTCATTCTCACAAA 59.372 45.455 0.00 0.00 0.00 2.83
2018 2637 3.305608 GCCCACCTTTCATTCTCACAAAG 60.306 47.826 0.00 0.00 0.00 2.77
2019 2638 3.891366 CCCACCTTTCATTCTCACAAAGT 59.109 43.478 0.00 0.00 0.00 2.66
2020 2639 4.261741 CCCACCTTTCATTCTCACAAAGTG 60.262 45.833 0.00 0.00 34.45 3.16
2021 2640 4.293415 CACCTTTCATTCTCACAAAGTGC 58.707 43.478 0.00 0.00 32.98 4.40
2022 2641 3.319122 ACCTTTCATTCTCACAAAGTGCC 59.681 43.478 0.00 0.00 32.98 5.01
2023 2642 3.571401 CCTTTCATTCTCACAAAGTGCCT 59.429 43.478 0.00 0.00 32.98 4.75
2024 2643 4.761739 CCTTTCATTCTCACAAAGTGCCTA 59.238 41.667 0.00 0.00 32.98 3.93
2025 2644 5.106396 CCTTTCATTCTCACAAAGTGCCTAG 60.106 44.000 0.00 0.00 32.98 3.02
2026 2645 3.942829 TCATTCTCACAAAGTGCCTAGG 58.057 45.455 3.67 3.67 32.98 3.02
2027 2646 3.582647 TCATTCTCACAAAGTGCCTAGGA 59.417 43.478 14.75 0.00 32.98 2.94
2028 2647 3.685139 TTCTCACAAAGTGCCTAGGAG 57.315 47.619 14.75 0.00 32.98 3.69
2029 2648 1.276421 TCTCACAAAGTGCCTAGGAGC 59.724 52.381 14.75 3.68 32.98 4.70
2030 2649 1.002430 CTCACAAAGTGCCTAGGAGCA 59.998 52.381 14.75 0.22 41.46 4.26
2045 2664 3.191539 GCACGTGCTAGAGCTGGC 61.192 66.667 32.55 1.87 42.66 4.85
2046 2665 2.575993 CACGTGCTAGAGCTGGCT 59.424 61.111 0.82 0.00 42.66 4.75
2047 2666 1.518133 CACGTGCTAGAGCTGGCTC 60.518 63.158 14.02 14.02 42.66 4.70
2055 2674 4.996976 GAGCTGGCTCTTCACGAA 57.003 55.556 14.51 0.00 39.80 3.85
2056 2675 2.748268 GAGCTGGCTCTTCACGAAG 58.252 57.895 14.51 0.08 39.80 3.79
2057 2676 0.244994 GAGCTGGCTCTTCACGAAGA 59.755 55.000 14.51 9.08 44.47 2.87
2063 2682 2.261671 TCTTCACGAAGAGCCCGC 59.738 61.111 5.38 0.00 42.06 6.13
2064 2683 2.262915 CTTCACGAAGAGCCCGCT 59.737 61.111 0.20 0.00 40.79 5.52
2065 2684 1.374758 CTTCACGAAGAGCCCGCTT 60.375 57.895 0.20 0.00 40.79 4.68
2066 2685 0.108804 CTTCACGAAGAGCCCGCTTA 60.109 55.000 0.20 0.00 40.79 3.09
2067 2686 0.389426 TTCACGAAGAGCCCGCTTAC 60.389 55.000 0.00 0.00 0.00 2.34
2068 2687 1.810030 CACGAAGAGCCCGCTTACC 60.810 63.158 0.00 0.00 0.00 2.85
2069 2688 1.982938 ACGAAGAGCCCGCTTACCT 60.983 57.895 0.00 0.00 0.00 3.08
2070 2689 1.218316 CGAAGAGCCCGCTTACCTT 59.782 57.895 0.00 0.00 0.00 3.50
2071 2690 0.806492 CGAAGAGCCCGCTTACCTTC 60.806 60.000 6.57 6.57 0.00 3.46
2072 2691 0.537653 GAAGAGCCCGCTTACCTTCT 59.462 55.000 8.59 0.00 32.72 2.85
2073 2692 0.537653 AAGAGCCCGCTTACCTTCTC 59.462 55.000 0.00 0.00 0.00 2.87
2074 2693 0.324830 AGAGCCCGCTTACCTTCTCT 60.325 55.000 0.00 0.00 0.00 3.10
2075 2694 0.103390 GAGCCCGCTTACCTTCTCTC 59.897 60.000 0.00 0.00 0.00 3.20
2076 2695 0.324830 AGCCCGCTTACCTTCTCTCT 60.325 55.000 0.00 0.00 0.00 3.10
2077 2696 0.103390 GCCCGCTTACCTTCTCTCTC 59.897 60.000 0.00 0.00 0.00 3.20
2078 2697 0.747852 CCCGCTTACCTTCTCTCTCC 59.252 60.000 0.00 0.00 0.00 3.71
2079 2698 1.686741 CCCGCTTACCTTCTCTCTCCT 60.687 57.143 0.00 0.00 0.00 3.69
2080 2699 2.104170 CCGCTTACCTTCTCTCTCCTT 58.896 52.381 0.00 0.00 0.00 3.36
2081 2700 2.498078 CCGCTTACCTTCTCTCTCCTTT 59.502 50.000 0.00 0.00 0.00 3.11
2082 2701 3.055747 CCGCTTACCTTCTCTCTCCTTTT 60.056 47.826 0.00 0.00 0.00 2.27
2083 2702 4.177783 CGCTTACCTTCTCTCTCCTTTTC 58.822 47.826 0.00 0.00 0.00 2.29
2084 2703 4.081917 CGCTTACCTTCTCTCTCCTTTTCT 60.082 45.833 0.00 0.00 0.00 2.52
2085 2704 5.416083 GCTTACCTTCTCTCTCCTTTTCTC 58.584 45.833 0.00 0.00 0.00 2.87
2086 2705 5.186992 GCTTACCTTCTCTCTCCTTTTCTCT 59.813 44.000 0.00 0.00 0.00 3.10
2087 2706 6.295632 GCTTACCTTCTCTCTCCTTTTCTCTT 60.296 42.308 0.00 0.00 0.00 2.85
2088 2707 7.619512 TTACCTTCTCTCTCCTTTTCTCTTT 57.380 36.000 0.00 0.00 0.00 2.52
2089 2708 6.109156 ACCTTCTCTCTCCTTTTCTCTTTC 57.891 41.667 0.00 0.00 0.00 2.62
2090 2709 5.012664 ACCTTCTCTCTCCTTTTCTCTTTCC 59.987 44.000 0.00 0.00 0.00 3.13
2091 2710 5.248248 CCTTCTCTCTCCTTTTCTCTTTCCT 59.752 44.000 0.00 0.00 0.00 3.36
2092 2711 5.993748 TCTCTCTCCTTTTCTCTTTCCTC 57.006 43.478 0.00 0.00 0.00 3.71
2093 2712 4.775253 TCTCTCTCCTTTTCTCTTTCCTCC 59.225 45.833 0.00 0.00 0.00 4.30
2094 2713 4.493618 TCTCTCCTTTTCTCTTTCCTCCA 58.506 43.478 0.00 0.00 0.00 3.86
2095 2714 4.907875 TCTCTCCTTTTCTCTTTCCTCCAA 59.092 41.667 0.00 0.00 0.00 3.53
2096 2715 4.974399 TCTCCTTTTCTCTTTCCTCCAAC 58.026 43.478 0.00 0.00 0.00 3.77
2097 2716 4.660771 TCTCCTTTTCTCTTTCCTCCAACT 59.339 41.667 0.00 0.00 0.00 3.16
2098 2717 5.844516 TCTCCTTTTCTCTTTCCTCCAACTA 59.155 40.000 0.00 0.00 0.00 2.24
2099 2718 6.329197 TCTCCTTTTCTCTTTCCTCCAACTAA 59.671 38.462 0.00 0.00 0.00 2.24
2100 2719 6.534634 TCCTTTTCTCTTTCCTCCAACTAAG 58.465 40.000 0.00 0.00 0.00 2.18
2101 2720 5.182190 CCTTTTCTCTTTCCTCCAACTAAGC 59.818 44.000 0.00 0.00 0.00 3.09
2102 2721 4.974645 TTCTCTTTCCTCCAACTAAGCA 57.025 40.909 0.00 0.00 0.00 3.91
2103 2722 4.974645 TCTCTTTCCTCCAACTAAGCAA 57.025 40.909 0.00 0.00 0.00 3.91
2104 2723 5.304686 TCTCTTTCCTCCAACTAAGCAAA 57.695 39.130 0.00 0.00 0.00 3.68
2105 2724 5.690865 TCTCTTTCCTCCAACTAAGCAAAA 58.309 37.500 0.00 0.00 0.00 2.44
2106 2725 6.126409 TCTCTTTCCTCCAACTAAGCAAAAA 58.874 36.000 0.00 0.00 0.00 1.94
2107 2726 6.777580 TCTCTTTCCTCCAACTAAGCAAAAAT 59.222 34.615 0.00 0.00 0.00 1.82
2108 2727 7.942341 TCTCTTTCCTCCAACTAAGCAAAAATA 59.058 33.333 0.00 0.00 0.00 1.40
2109 2728 8.650143 TCTTTCCTCCAACTAAGCAAAAATAT 57.350 30.769 0.00 0.00 0.00 1.28
2110 2729 9.747898 TCTTTCCTCCAACTAAGCAAAAATATA 57.252 29.630 0.00 0.00 0.00 0.86
2111 2730 9.788960 CTTTCCTCCAACTAAGCAAAAATATAC 57.211 33.333 0.00 0.00 0.00 1.47
2112 2731 9.528489 TTTCCTCCAACTAAGCAAAAATATACT 57.472 29.630 0.00 0.00 0.00 2.12
2114 2733 9.832445 TCCTCCAACTAAGCAAAAATATACTAG 57.168 33.333 0.00 0.00 0.00 2.57
2115 2734 9.614792 CCTCCAACTAAGCAAAAATATACTAGT 57.385 33.333 0.00 0.00 0.00 2.57
2134 2753 7.560796 ACTAGTTTATTCCATATAGCCTGCT 57.439 36.000 0.00 0.00 0.00 4.24
2135 2754 7.390027 ACTAGTTTATTCCATATAGCCTGCTG 58.610 38.462 0.97 0.00 0.00 4.41
2136 2755 6.439636 AGTTTATTCCATATAGCCTGCTGA 57.560 37.500 0.97 0.00 0.00 4.26
2137 2756 6.234177 AGTTTATTCCATATAGCCTGCTGAC 58.766 40.000 0.97 0.00 0.00 3.51
2138 2757 6.043706 AGTTTATTCCATATAGCCTGCTGACT 59.956 38.462 0.97 0.00 0.00 3.41
2139 2758 4.550076 ATTCCATATAGCCTGCTGACTC 57.450 45.455 0.97 0.00 0.00 3.36
2140 2759 2.962859 TCCATATAGCCTGCTGACTCA 58.037 47.619 0.97 0.00 0.00 3.41
2141 2760 3.514539 TCCATATAGCCTGCTGACTCAT 58.485 45.455 0.97 0.00 0.00 2.90
2142 2761 3.513119 TCCATATAGCCTGCTGACTCATC 59.487 47.826 0.97 0.00 0.00 2.92
2143 2762 3.514706 CCATATAGCCTGCTGACTCATCT 59.485 47.826 0.97 0.00 0.00 2.90
2144 2763 4.381825 CCATATAGCCTGCTGACTCATCTC 60.382 50.000 0.97 0.00 0.00 2.75
2145 2764 2.450867 TAGCCTGCTGACTCATCTCT 57.549 50.000 0.97 0.00 0.00 3.10
2146 2765 2.450867 AGCCTGCTGACTCATCTCTA 57.549 50.000 0.00 0.00 0.00 2.43
2147 2766 2.961510 AGCCTGCTGACTCATCTCTAT 58.038 47.619 0.00 0.00 0.00 1.98
2148 2767 3.307506 AGCCTGCTGACTCATCTCTATT 58.692 45.455 0.00 0.00 0.00 1.73
2149 2768 4.478203 AGCCTGCTGACTCATCTCTATTA 58.522 43.478 0.00 0.00 0.00 0.98
2150 2769 5.085920 AGCCTGCTGACTCATCTCTATTAT 58.914 41.667 0.00 0.00 0.00 1.28
2151 2770 6.252233 AGCCTGCTGACTCATCTCTATTATA 58.748 40.000 0.00 0.00 0.00 0.98
2152 2771 6.152661 AGCCTGCTGACTCATCTCTATTATAC 59.847 42.308 0.00 0.00 0.00 1.47
2153 2772 6.152661 GCCTGCTGACTCATCTCTATTATACT 59.847 42.308 0.00 0.00 0.00 2.12
2154 2773 7.309744 GCCTGCTGACTCATCTCTATTATACTT 60.310 40.741 0.00 0.00 0.00 2.24
2155 2774 8.028354 CCTGCTGACTCATCTCTATTATACTTG 58.972 40.741 0.00 0.00 0.00 3.16
2156 2775 7.374272 TGCTGACTCATCTCTATTATACTTGC 58.626 38.462 0.00 0.00 0.00 4.01
2157 2776 7.232330 TGCTGACTCATCTCTATTATACTTGCT 59.768 37.037 0.00 0.00 0.00 3.91
2158 2777 7.754924 GCTGACTCATCTCTATTATACTTGCTC 59.245 40.741 0.00 0.00 0.00 4.26
2159 2778 8.932434 TGACTCATCTCTATTATACTTGCTCT 57.068 34.615 0.00 0.00 0.00 4.09
2209 2835 1.268899 AGAACCTCGTTGTACTCGGTG 59.731 52.381 10.10 5.62 0.00 4.94
2218 2844 1.154073 GTACTCGGTGCTGTCGGTC 60.154 63.158 0.00 0.00 0.00 4.79
2291 2917 5.982890 AAATCAATTGTCGACCCTCATTT 57.017 34.783 14.12 8.21 0.00 2.32
2292 2918 7.461182 AAAATCAATTGTCGACCCTCATTTA 57.539 32.000 14.12 0.00 0.00 1.40
2299 2965 7.931578 ATTGTCGACCCTCATTTATGTTTTA 57.068 32.000 14.12 0.00 0.00 1.52
2371 3041 9.709495 TCCATCATTCTTTGAAATAAACCAAAG 57.291 29.630 0.00 0.00 46.30 2.77
2372 3042 9.492973 CCATCATTCTTTGAAATAAACCAAAGT 57.507 29.630 12.65 0.00 45.57 2.66
2375 3045 9.883142 TCATTCTTTGAAATAAACCAAAGTTGT 57.117 25.926 12.65 1.31 45.57 3.32
2439 3109 8.930846 ATACTCCCTCCAATCTGAATTAATTG 57.069 34.615 5.17 0.00 33.57 2.32
2459 3129 4.433186 TGGCACAAACTGTATACAATGC 57.567 40.909 7.06 11.03 31.92 3.56
2460 3130 3.823304 TGGCACAAACTGTATACAATGCA 59.177 39.130 19.12 0.00 31.92 3.96
2461 3131 4.279420 TGGCACAAACTGTATACAATGCAA 59.721 37.500 19.12 10.98 31.92 4.08
2464 3134 6.346518 GGCACAAACTGTATACAATGCAAAAC 60.347 38.462 19.12 4.63 33.48 2.43
2465 3135 6.199908 GCACAAACTGTATACAATGCAAAACA 59.800 34.615 7.06 0.00 0.00 2.83
2466 3136 7.095691 GCACAAACTGTATACAATGCAAAACAT 60.096 33.333 7.06 0.00 42.30 2.71
2523 3272 2.159585 TGTTGTTGTTGTCGTGCTCTTG 60.160 45.455 0.00 0.00 0.00 3.02
2531 3280 3.607422 TGTCGTGCTCTTGATTTGTTG 57.393 42.857 0.00 0.00 0.00 3.33
2532 3281 2.286950 TGTCGTGCTCTTGATTTGTTGC 60.287 45.455 0.00 0.00 0.00 4.17
2533 3282 1.946081 TCGTGCTCTTGATTTGTTGCA 59.054 42.857 0.00 0.00 0.00 4.08
2534 3283 2.031769 TCGTGCTCTTGATTTGTTGCAG 60.032 45.455 0.00 0.00 0.00 4.41
2535 3284 2.056577 GTGCTCTTGATTTGTTGCAGC 58.943 47.619 0.00 0.00 0.00 5.25
2536 3285 1.958579 TGCTCTTGATTTGTTGCAGCT 59.041 42.857 1.17 0.00 0.00 4.24
2537 3286 3.058016 GTGCTCTTGATTTGTTGCAGCTA 60.058 43.478 1.17 0.00 0.00 3.32
2555 3305 6.884836 TGCAGCTATCTATATACGAAGAGGAA 59.115 38.462 0.00 0.00 0.00 3.36
2597 3347 4.585162 CAGTCGAGGGAAGAGTATATTGGT 59.415 45.833 0.00 0.00 0.00 3.67
2616 3366 4.104086 TGGTTCACTCAGGAGGTAATGAT 58.896 43.478 0.83 0.00 0.00 2.45
2617 3367 4.162320 TGGTTCACTCAGGAGGTAATGATC 59.838 45.833 0.83 0.00 0.00 2.92
2624 3374 6.825213 CACTCAGGAGGTAATGATCATCAAAA 59.175 38.462 9.06 0.00 0.00 2.44
2626 3376 7.501559 ACTCAGGAGGTAATGATCATCAAAATG 59.498 37.037 9.06 3.21 0.00 2.32
2627 3377 7.348815 TCAGGAGGTAATGATCATCAAAATGT 58.651 34.615 9.06 0.00 34.32 2.71
2629 3379 9.123902 CAGGAGGTAATGATCATCAAAATGTAA 57.876 33.333 9.06 0.00 34.32 2.41
2630 3380 9.125026 AGGAGGTAATGATCATCAAAATGTAAC 57.875 33.333 9.06 0.00 34.32 2.50
2631 3381 8.070171 GGAGGTAATGATCATCAAAATGTAACG 58.930 37.037 9.06 0.00 34.32 3.18
2632 3382 8.731275 AGGTAATGATCATCAAAATGTAACGA 57.269 30.769 9.06 0.00 34.32 3.85
2634 3384 9.385902 GGTAATGATCATCAAAATGTAACGATG 57.614 33.333 9.06 0.00 37.25 3.84
2637 3390 9.859427 AATGATCATCAAAATGTAACGATGTTT 57.141 25.926 9.06 0.00 37.21 2.83
2646 3399 9.993881 CAAAATGTAACGATGTTTTTCTGAATC 57.006 29.630 0.00 0.00 0.00 2.52
2647 3400 8.742554 AAATGTAACGATGTTTTTCTGAATCC 57.257 30.769 0.00 0.00 0.00 3.01
2666 3419 1.741770 CGCTCCCCCTTCAGTTTCG 60.742 63.158 0.00 0.00 0.00 3.46
2674 3427 3.335579 CCCCTTCAGTTTCGGTAGAAAG 58.664 50.000 0.00 0.00 45.92 2.62
2675 3428 2.742589 CCCTTCAGTTTCGGTAGAAAGC 59.257 50.000 0.00 0.00 45.92 3.51
2684 3437 1.066430 TCGGTAGAAAGCACATGGGAC 60.066 52.381 0.00 0.00 0.00 4.46
2687 3440 3.369052 CGGTAGAAAGCACATGGGACTTA 60.369 47.826 0.00 0.00 0.00 2.24
2696 3449 6.267496 AGCACATGGGACTTAAACAAATAC 57.733 37.500 0.00 0.00 0.00 1.89
2700 3453 7.602265 GCACATGGGACTTAAACAAATACAAAT 59.398 33.333 0.00 0.00 0.00 2.32
2721 3474 8.364894 ACAAATCTTAAAACAAACCATACTCCC 58.635 33.333 0.00 0.00 0.00 4.30
2723 3476 7.939784 ATCTTAAAACAAACCATACTCCCTC 57.060 36.000 0.00 0.00 0.00 4.30
2724 3477 6.243148 TCTTAAAACAAACCATACTCCCTCC 58.757 40.000 0.00 0.00 0.00 4.30
2725 3478 4.463050 AAAACAAACCATACTCCCTCCA 57.537 40.909 0.00 0.00 0.00 3.86
2726 3479 4.675063 AAACAAACCATACTCCCTCCAT 57.325 40.909 0.00 0.00 0.00 3.41
2727 3480 4.675063 AACAAACCATACTCCCTCCATT 57.325 40.909 0.00 0.00 0.00 3.16
2728 3481 4.236527 ACAAACCATACTCCCTCCATTC 57.763 45.455 0.00 0.00 0.00 2.67
2729 3482 3.053619 ACAAACCATACTCCCTCCATTCC 60.054 47.826 0.00 0.00 0.00 3.01
2732 3485 3.197983 ACCATACTCCCTCCATTCCAAA 58.802 45.455 0.00 0.00 0.00 3.28
2733 3486 3.596046 ACCATACTCCCTCCATTCCAAAA 59.404 43.478 0.00 0.00 0.00 2.44
2735 3488 5.211201 CCATACTCCCTCCATTCCAAAAAT 58.789 41.667 0.00 0.00 0.00 1.82
2737 3490 7.012607 CCATACTCCCTCCATTCCAAAAATAT 58.987 38.462 0.00 0.00 0.00 1.28
2738 3491 7.177392 CCATACTCCCTCCATTCCAAAAATATC 59.823 40.741 0.00 0.00 0.00 1.63
2739 3492 6.347061 ACTCCCTCCATTCCAAAAATATCT 57.653 37.500 0.00 0.00 0.00 1.98
2740 3493 6.368805 ACTCCCTCCATTCCAAAAATATCTC 58.631 40.000 0.00 0.00 0.00 2.75
2741 3494 6.161170 ACTCCCTCCATTCCAAAAATATCTCT 59.839 38.462 0.00 0.00 0.00 3.10
2742 3495 6.367983 TCCCTCCATTCCAAAAATATCTCTG 58.632 40.000 0.00 0.00 0.00 3.35
2743 3496 6.068853 TCCCTCCATTCCAAAAATATCTCTGT 60.069 38.462 0.00 0.00 0.00 3.41
2744 3497 7.128728 TCCCTCCATTCCAAAAATATCTCTGTA 59.871 37.037 0.00 0.00 0.00 2.74
2745 3498 7.779798 CCCTCCATTCCAAAAATATCTCTGTAA 59.220 37.037 0.00 0.00 0.00 2.41
2746 3499 8.624776 CCTCCATTCCAAAAATATCTCTGTAAC 58.375 37.037 0.00 0.00 0.00 2.50
2747 3500 9.401058 CTCCATTCCAAAAATATCTCTGTAACT 57.599 33.333 0.00 0.00 0.00 2.24
2796 3549 9.719279 TTAATTCAATTTGAACTACGAAAACGT 57.281 25.926 13.80 0.00 39.45 3.99
2797 3550 7.831750 ATTCAATTTGAACTACGAAAACGTC 57.168 32.000 13.80 0.00 39.45 4.34
2798 3551 6.592798 TCAATTTGAACTACGAAAACGTCT 57.407 33.333 0.00 0.00 0.00 4.18
2799 3552 7.007313 TCAATTTGAACTACGAAAACGTCTT 57.993 32.000 0.00 0.00 0.00 3.01
2800 3553 8.129161 TCAATTTGAACTACGAAAACGTCTTA 57.871 30.769 0.00 0.00 0.00 2.10
2801 3554 8.057742 TCAATTTGAACTACGAAAACGTCTTAC 58.942 33.333 0.00 0.00 0.00 2.34
2802 3555 6.884096 TTTGAACTACGAAAACGTCTTACA 57.116 33.333 0.00 0.00 0.00 2.41
2803 3556 7.467557 TTTGAACTACGAAAACGTCTTACAT 57.532 32.000 0.00 0.00 0.00 2.29
2804 3557 7.467557 TTGAACTACGAAAACGTCTTACATT 57.532 32.000 0.00 0.00 0.00 2.71
2805 3558 8.572828 TTGAACTACGAAAACGTCTTACATTA 57.427 30.769 0.00 0.00 0.00 1.90
2806 3559 8.219436 TGAACTACGAAAACGTCTTACATTAG 57.781 34.615 0.00 0.00 0.00 1.73
2807 3560 7.862372 TGAACTACGAAAACGTCTTACATTAGT 59.138 33.333 0.00 0.00 0.00 2.24
2808 3561 8.579682 AACTACGAAAACGTCTTACATTAGTT 57.420 30.769 0.00 0.00 0.00 2.24
2809 3562 9.677567 AACTACGAAAACGTCTTACATTAGTTA 57.322 29.630 0.00 0.00 0.00 2.24
2810 3563 9.846248 ACTACGAAAACGTCTTACATTAGTTAT 57.154 29.630 0.00 0.00 0.00 1.89
2819 3572 9.844257 ACGTCTTACATTAGTTATAGAGGTAGT 57.156 33.333 0.00 0.00 31.71 2.73
2834 3587 6.075949 AGAGGTAGTAGTACTGATGTCCAA 57.924 41.667 13.29 0.00 0.00 3.53
2835 3588 6.491383 AGAGGTAGTAGTACTGATGTCCAAA 58.509 40.000 13.29 0.00 0.00 3.28
2836 3589 6.952358 AGAGGTAGTAGTACTGATGTCCAAAA 59.048 38.462 13.29 0.00 0.00 2.44
2837 3590 7.620094 AGAGGTAGTAGTACTGATGTCCAAAAT 59.380 37.037 13.29 0.00 0.00 1.82
2838 3591 8.147244 AGGTAGTAGTACTGATGTCCAAAATT 57.853 34.615 13.29 0.00 0.00 1.82
2839 3592 8.603304 AGGTAGTAGTACTGATGTCCAAAATTT 58.397 33.333 13.29 0.00 0.00 1.82
2840 3593 9.880157 GGTAGTAGTACTGATGTCCAAAATTTA 57.120 33.333 13.29 0.00 0.00 1.40
2854 3607 9.575868 TGTCCAAAATTTAGTACTTATGTCCAA 57.424 29.630 0.00 0.00 0.00 3.53
2938 3691 2.427812 TCGCAAGGTAACATCATCCGTA 59.572 45.455 0.00 0.00 41.41 4.02
2944 3697 5.607939 AGGTAACATCATCCGTAACATCA 57.392 39.130 0.00 0.00 41.41 3.07
2948 3701 6.315393 GGTAACATCATCCGTAACATCAAACT 59.685 38.462 0.00 0.00 0.00 2.66
2961 3714 7.201530 CGTAACATCAAACTAGATTTCTCCACC 60.202 40.741 0.00 0.00 0.00 4.61
2983 3736 1.202782 TCCGAACGGGATTTCAAACCA 60.203 47.619 13.29 0.00 40.94 3.67
2986 3739 2.350388 CGAACGGGATTTCAAACCACAG 60.350 50.000 0.00 0.00 0.00 3.66
3045 3802 9.806203 CACATATGTATCCATTCACAACAAATT 57.194 29.630 8.32 0.00 32.29 1.82
3176 3937 3.825328 ACCTCCTTCCACAATATCATGC 58.175 45.455 0.00 0.00 0.00 4.06
3205 3966 4.606961 AGCGAAACCACAAAATACAAGTG 58.393 39.130 0.00 0.00 0.00 3.16
3227 3988 3.573491 GTAGCATCGCAACGGCCC 61.573 66.667 0.00 0.00 36.38 5.80
3237 3998 0.534873 GCAACGGCCCCAATAAATGT 59.465 50.000 0.00 0.00 0.00 2.71
3239 4000 2.099405 CAACGGCCCCAATAAATGTCT 58.901 47.619 0.00 0.00 0.00 3.41
3281 4042 7.755591 TCATAAAATCTTCAGTCGTACTACGT 58.244 34.615 8.42 0.00 43.14 3.57
3283 4044 8.941923 CATAAAATCTTCAGTCGTACTACGTAC 58.058 37.037 8.42 5.94 43.14 3.67
3284 4045 6.486253 AAATCTTCAGTCGTACTACGTACA 57.514 37.500 8.42 0.00 43.14 2.90
3291 4058 8.871686 TTCAGTCGTACTACGTACATAGATAA 57.128 34.615 2.40 0.00 43.14 1.75
3329 4105 2.807967 TGAAAGCCAAATCTGAGTCGTG 59.192 45.455 0.00 0.00 0.00 4.35
3357 4133 2.056223 TACCGCAGCCTACACTCCC 61.056 63.158 0.00 0.00 0.00 4.30
3358 4134 2.791613 TACCGCAGCCTACACTCCCA 62.792 60.000 0.00 0.00 0.00 4.37
3420 4196 2.010145 TGACGATTAGGCACAAGCTC 57.990 50.000 0.00 0.00 41.70 4.09
3429 4205 1.639298 GGCACAAGCTCGACCATCAC 61.639 60.000 0.00 0.00 41.70 3.06
3430 4206 0.950555 GCACAAGCTCGACCATCACA 60.951 55.000 0.00 0.00 37.91 3.58
3431 4207 1.073964 CACAAGCTCGACCATCACAG 58.926 55.000 0.00 0.00 0.00 3.66
3432 4208 0.969149 ACAAGCTCGACCATCACAGA 59.031 50.000 0.00 0.00 0.00 3.41
3433 4209 1.337260 ACAAGCTCGACCATCACAGAC 60.337 52.381 0.00 0.00 0.00 3.51
3434 4210 1.067283 CAAGCTCGACCATCACAGACT 60.067 52.381 0.00 0.00 0.00 3.24
3435 4211 0.814457 AGCTCGACCATCACAGACTC 59.186 55.000 0.00 0.00 0.00 3.36
3436 4212 0.528017 GCTCGACCATCACAGACTCA 59.472 55.000 0.00 0.00 0.00 3.41
3454 4230 0.322975 CACAGTCCAGCTTAGTGCCT 59.677 55.000 1.32 0.00 44.23 4.75
3458 4234 2.697751 CAGTCCAGCTTAGTGCCTAGAT 59.302 50.000 0.00 0.00 44.23 1.98
3512 4288 2.934553 GGCCAACTAATTCGTACACTCC 59.065 50.000 0.00 0.00 0.00 3.85
3539 4315 4.604976 CTGAAATGCCTGCTAATGCTAAC 58.395 43.478 0.00 0.00 40.48 2.34
3587 4364 1.089920 CTGCTGGGTACAATCACTGC 58.910 55.000 0.00 0.00 36.47 4.40
3607 4434 2.202797 CCCATCACAGTCGGAGCG 60.203 66.667 0.00 0.00 0.00 5.03
3647 4474 1.061887 GCGCACAAGTTTCGTGTGT 59.938 52.632 0.30 0.00 46.58 3.72
3650 4477 2.601266 GCGCACAAGTTTCGTGTGTATT 60.601 45.455 0.30 0.00 46.58 1.89
3656 4483 3.374220 AGTTTCGTGTGTATTCCGTGA 57.626 42.857 0.00 0.00 0.00 4.35
3767 4602 7.408132 TGTTCTTCTGAGTTAGAAATGTTCG 57.592 36.000 0.00 0.00 44.47 3.95
3777 4612 1.002087 AGAAATGTTCGACCGCCTCTT 59.998 47.619 0.00 0.00 34.02 2.85
3779 4614 1.892209 AATGTTCGACCGCCTCTTTT 58.108 45.000 0.00 0.00 0.00 2.27
3834 4669 2.055838 GCTATGAACACGTGTTGTCGA 58.944 47.619 36.74 18.16 37.51 4.20
3870 4705 2.030958 GTGCGTCCCCACGGTTTAG 61.031 63.158 0.00 0.00 46.80 1.85
3966 4801 2.499214 GAGATGAGGTCTCGGCAGT 58.501 57.895 0.00 0.00 43.65 4.40
4050 4893 0.759346 ACTTCAACTTCCAGCGGTCT 59.241 50.000 0.00 0.00 0.00 3.85
4155 5033 4.424626 CGCATGATCGTAGGCTGTTATAT 58.575 43.478 0.00 0.00 0.00 0.86
4227 5110 6.369615 TGGTTAGCAGAATTTACGTTTCTACC 59.630 38.462 9.67 9.67 32.41 3.18
4276 5168 7.807977 TTTACAATCCTATCATTGGAGCTTC 57.192 36.000 0.00 0.00 37.98 3.86
4318 5210 5.351465 CGATTGTGACTGCCTTAATTGTAGT 59.649 40.000 0.00 0.00 0.00 2.73
4320 5212 7.224753 CGATTGTGACTGCCTTAATTGTAGTAT 59.775 37.037 0.00 0.00 0.00 2.12
4322 5214 7.843490 TGTGACTGCCTTAATTGTAGTATTC 57.157 36.000 0.00 0.00 0.00 1.75
4349 5243 0.996727 AACGAAAAATGCTGCGTCGC 60.997 50.000 11.10 11.10 35.74 5.19
4350 5244 2.145905 CGAAAAATGCTGCGTCGCC 61.146 57.895 15.88 0.00 0.00 5.54
4351 5245 1.801512 GAAAAATGCTGCGTCGCCC 60.802 57.895 15.88 6.39 0.00 6.13
4352 5246 3.281359 AAAAATGCTGCGTCGCCCC 62.281 57.895 15.88 6.00 0.00 5.80
4353 5247 4.722700 AAATGCTGCGTCGCCCCT 62.723 61.111 15.88 0.00 0.00 4.79
4358 5252 2.668212 CTGCGTCGCCCCTCAAAA 60.668 61.111 15.88 0.00 0.00 2.44
4359 5253 2.203224 TGCGTCGCCCCTCAAAAA 60.203 55.556 15.88 0.00 0.00 1.94
4427 5321 4.742201 GCAGCGACGCAGGAGGAA 62.742 66.667 23.70 0.00 0.00 3.36
4668 5562 2.190313 GCATGGAGGACGGCATGA 59.810 61.111 0.00 0.00 0.00 3.07
4988 5885 2.971452 GACGGCCTCTTCTTCGGT 59.029 61.111 0.00 0.00 0.00 4.69
5045 5942 3.084579 CTGGACTTGTGATCGCGC 58.915 61.111 0.00 0.00 0.00 6.86
5075 5972 1.907739 GCCACTGGCCAGACTGATA 59.092 57.895 39.19 0.00 44.06 2.15
5085 5982 1.269569 CCAGACTGATACGCGCCATTA 60.270 52.381 5.73 0.00 0.00 1.90
5113 6010 2.468474 TCCAATGGGGATGGGGGA 59.532 61.111 0.00 0.00 42.15 4.81
5180 6077 8.097038 AGAGCAAGATAACAGAGAATTGTTACA 58.903 33.333 1.14 0.00 43.93 2.41
5210 6107 7.224362 CAGCTAGTGAGGACTGAGAATTATTTG 59.776 40.741 0.00 0.00 33.21 2.32
5381 6288 6.487689 ACGAAGATTCTTCCATTTCAAGTC 57.512 37.500 18.46 0.00 0.00 3.01
5460 6367 9.719355 ATGTAGAGAAATGTGTTAACATGTACA 57.281 29.630 12.26 13.15 46.58 2.90
5461 6368 9.203421 TGTAGAGAAATGTGTTAACATGTACAG 57.797 33.333 12.26 0.00 46.58 2.74
5464 6371 7.391554 AGAGAAATGTGTTAACATGTACAGCAT 59.608 33.333 12.26 5.73 46.58 3.79
5484 6399 5.871524 AGCATGAAATATATGTAGTGCGGAG 59.128 40.000 0.00 0.00 36.53 4.63
5505 6420 6.472163 CGGAGATATACAAACATTTGGCAAAC 59.528 38.462 16.00 0.00 42.34 2.93
5506 6421 7.547227 GGAGATATACAAACATTTGGCAAACT 58.453 34.615 16.00 2.88 42.34 2.66
5507 6422 8.682710 GGAGATATACAAACATTTGGCAAACTA 58.317 33.333 16.00 0.00 42.34 2.24
5512 6427 8.956533 ATACAAACATTTGGCAAACTAAAAGT 57.043 26.923 16.00 11.97 42.34 2.66
5606 6525 4.606071 CCTTCCAGGTCGAAGCTG 57.394 61.111 0.00 6.98 42.96 4.24
5607 6526 1.743252 CCTTCCAGGTCGAAGCTGC 60.743 63.158 8.09 0.00 42.05 5.25
5608 6527 1.004560 CTTCCAGGTCGAAGCTGCA 60.005 57.895 1.02 0.00 42.05 4.41
5609 6528 1.004560 TTCCAGGTCGAAGCTGCAG 60.005 57.895 10.11 10.11 42.05 4.41
5610 6529 1.471829 TTCCAGGTCGAAGCTGCAGA 61.472 55.000 20.43 0.00 42.05 4.26
5611 6530 1.004560 CCAGGTCGAAGCTGCAGAA 60.005 57.895 20.43 0.00 42.05 3.02
5612 6531 1.018226 CCAGGTCGAAGCTGCAGAAG 61.018 60.000 20.43 4.81 42.05 2.85
5764 6692 1.304381 AATGTGCCCGCTGTGGAAT 60.304 52.632 9.25 0.00 42.00 3.01
5857 6790 1.946768 CAAGAAGTCGTGGCTGGAAAA 59.053 47.619 0.00 0.00 0.00 2.29
5900 6833 1.153188 TATCCTGGCGTACGGTCGA 60.153 57.895 18.39 0.00 0.00 4.20
6201 7141 4.821589 GAAGGAGGGGTGCGCTCG 62.822 72.222 9.73 0.00 43.09 5.03
6208 7153 4.681978 GGGTGCGCTCGTGGTCTT 62.682 66.667 9.73 0.00 0.00 3.01
6275 7220 1.498264 TGGATAACGAAATCCCCCGA 58.502 50.000 15.17 0.00 44.23 5.14
6281 7226 1.984066 ACGAAATCCCCCGACAAAAA 58.016 45.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.438472 GGTCGTACGATCAAAGCTAAGACT 60.438 45.833 23.27 0.00 0.00 3.24
6 7 3.693085 AGGTCGTACGATCAAAGCTAAGA 59.307 43.478 28.89 0.00 0.00 2.10
25 26 5.251700 AGAAATGGACTCATTCCTAACAGGT 59.748 40.000 0.00 0.00 46.10 4.00
84 85 1.136891 CACTAGCACATCCCATCGTCA 59.863 52.381 0.00 0.00 0.00 4.35
114 115 1.271379 GGGTGCAGTGTCAATACCACT 60.271 52.381 0.00 0.00 43.76 4.00
116 117 0.321210 CGGGTGCAGTGTCAATACCA 60.321 55.000 0.00 0.00 33.10 3.25
121 122 2.203139 CCACGGGTGCAGTGTCAA 60.203 61.111 4.13 0.00 37.88 3.18
137 138 3.859278 CCATCACATTTTTGGCCCC 57.141 52.632 0.00 0.00 0.00 5.80
189 191 1.922447 TGGTGCCTTATTGTCCCTCAT 59.078 47.619 0.00 0.00 0.00 2.90
232 234 6.096001 ACCATAATTGCATCCTTTCTTCACTC 59.904 38.462 0.00 0.00 0.00 3.51
421 987 6.457355 TGCACTGTTGATGCTTTCATTAAAT 58.543 32.000 0.00 0.00 43.77 1.40
451 1017 2.030457 GCACGGTCGGAGTATTGATTTG 59.970 50.000 0.00 0.00 0.00 2.32
465 1031 1.656095 CTTCTCATTTCGAGCACGGTC 59.344 52.381 3.11 0.00 41.98 4.79
515 1081 1.874345 CGTCCGGGCGAATATAGGCT 61.874 60.000 27.65 0.00 0.00 4.58
618 1186 8.464404 TCAACGCACATAGTTTTATACTACTCT 58.536 33.333 0.00 0.00 41.99 3.24
635 1203 1.523154 GCCCCAAATCTCAACGCACA 61.523 55.000 0.00 0.00 0.00 4.57
666 1234 4.025858 AGGCATGAGCGCTGGTGT 62.026 61.111 18.48 0.00 43.41 4.16
674 1242 2.758089 CGCTGGTTCAGGCATGAGC 61.758 63.158 6.67 6.67 36.61 4.26
675 1243 2.758089 GCGCTGGTTCAGGCATGAG 61.758 63.158 0.00 0.00 36.61 2.90
676 1244 1.898330 TAGCGCTGGTTCAGGCATGA 61.898 55.000 22.90 0.00 32.75 3.07
677 1245 1.434622 CTAGCGCTGGTTCAGGCATG 61.435 60.000 22.90 0.00 32.75 4.06
678 1246 1.153289 CTAGCGCTGGTTCAGGCAT 60.153 57.895 22.90 0.00 32.75 4.40
679 1247 2.265739 CTAGCGCTGGTTCAGGCA 59.734 61.111 22.90 0.00 32.75 4.75
680 1248 1.811679 GTCTAGCGCTGGTTCAGGC 60.812 63.158 22.90 6.57 31.21 4.85
681 1249 1.153549 GGTCTAGCGCTGGTTCAGG 60.154 63.158 22.90 1.31 31.21 3.86
682 1250 1.153549 GGGTCTAGCGCTGGTTCAG 60.154 63.158 22.90 9.28 34.12 3.02
683 1251 1.605058 GAGGGTCTAGCGCTGGTTCA 61.605 60.000 22.90 0.00 40.72 3.18
684 1252 1.142097 GAGGGTCTAGCGCTGGTTC 59.858 63.158 22.90 14.52 40.72 3.62
685 1253 2.711922 CGAGGGTCTAGCGCTGGTT 61.712 63.158 22.90 4.83 40.72 3.67
702 1270 1.192793 GCTTGTCGCTAGCTACTTCG 58.807 55.000 18.99 9.16 35.74 3.79
758 1326 3.526534 CTCGGACAGAAAGGGAAATCTC 58.473 50.000 0.00 0.00 0.00 2.75
889 1467 2.647949 GGGAGGAGGAGGAGGGGAA 61.648 68.421 0.00 0.00 0.00 3.97
890 1468 3.036959 GGGAGGAGGAGGAGGGGA 61.037 72.222 0.00 0.00 0.00 4.81
891 1469 4.179599 GGGGAGGAGGAGGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
892 1470 4.548513 CGGGGAGGAGGAGGAGGG 62.549 77.778 0.00 0.00 0.00 4.30
894 1472 4.465446 TGCGGGGAGGAGGAGGAG 62.465 72.222 0.00 0.00 0.00 3.69
921 1499 2.758423 GGTGGCCGTTTTAAAGATGGAT 59.242 45.455 0.00 0.00 0.00 3.41
982 1562 2.454941 GGAGGGAGTGAGGGGGAA 59.545 66.667 0.00 0.00 0.00 3.97
983 1563 3.695825 GGGAGGGAGTGAGGGGGA 61.696 72.222 0.00 0.00 0.00 4.81
985 1565 2.689034 GTGGGAGGGAGTGAGGGG 60.689 72.222 0.00 0.00 0.00 4.79
991 1571 3.314331 CTGCGTGTGGGAGGGAGT 61.314 66.667 0.00 0.00 0.00 3.85
1015 1595 4.728102 TTGCCATTGCGCTGCTGC 62.728 61.111 9.73 5.34 41.78 5.25
1016 1596 2.048970 TTTGCCATTGCGCTGCTG 60.049 55.556 9.73 2.99 41.78 4.41
1017 1597 2.260434 CTTTGCCATTGCGCTGCT 59.740 55.556 9.73 0.00 41.78 4.24
1225 1805 4.504916 CTCGGGCGAGACTGGCTG 62.505 72.222 9.46 5.35 44.53 4.85
1266 1846 2.695359 GTTCCGTTAGCATGACTGGAA 58.305 47.619 0.00 0.00 33.34 3.53
1267 1847 1.403647 CGTTCCGTTAGCATGACTGGA 60.404 52.381 0.00 0.00 0.00 3.86
1270 1850 0.739813 GCCGTTCCGTTAGCATGACT 60.740 55.000 0.00 0.00 0.00 3.41
1389 1979 2.520741 CGGGTTGGCTGGTTGGTT 60.521 61.111 0.00 0.00 0.00 3.67
1391 1981 3.561120 TAGCGGGTTGGCTGGTTGG 62.561 63.158 0.00 0.00 44.50 3.77
1392 1982 2.033448 TAGCGGGTTGGCTGGTTG 59.967 61.111 0.00 0.00 44.50 3.77
1424 2014 0.454600 GTCGACTAATGACGGAGCCA 59.545 55.000 8.70 0.00 32.67 4.75
1429 2019 2.649331 AACCAGTCGACTAATGACGG 57.351 50.000 19.57 16.35 41.24 4.79
1476 2070 3.052082 CAACAGCAGCAGACGGGG 61.052 66.667 0.00 0.00 0.00 5.73
1480 2074 1.534595 CCAACAACAACAGCAGCAGAC 60.535 52.381 0.00 0.00 0.00 3.51
1481 2075 0.740149 CCAACAACAACAGCAGCAGA 59.260 50.000 0.00 0.00 0.00 4.26
1505 2105 0.736325 CCTCACCGAGGTAAACTGCG 60.736 60.000 1.64 0.00 44.25 5.18
1566 2166 4.954118 ACGAGGGGCAGTGGTGGA 62.954 66.667 0.00 0.00 0.00 4.02
1567 2167 4.394712 GACGAGGGGCAGTGGTGG 62.395 72.222 0.00 0.00 0.00 4.61
1569 2169 3.626924 GTGACGAGGGGCAGTGGT 61.627 66.667 0.00 0.00 0.00 4.16
1571 2171 2.262915 GAGTGACGAGGGGCAGTG 59.737 66.667 0.00 0.00 0.00 3.66
1572 2172 2.997897 GGAGTGACGAGGGGCAGT 60.998 66.667 0.00 0.00 0.00 4.40
1582 2182 0.037975 TTTAACGGCGAGGGAGTGAC 60.038 55.000 16.62 0.00 0.00 3.67
1588 2188 2.415512 CTCTTCTTTTTAACGGCGAGGG 59.584 50.000 16.62 0.00 0.00 4.30
1629 2229 2.238847 TACAGTTAGCCCGGCAGCAG 62.239 60.000 13.15 0.61 34.23 4.24
1645 2245 2.612471 GCAGCATTGTGGGCAATTTACA 60.612 45.455 0.00 0.00 42.91 2.41
1850 2469 4.577988 AGAGACTTCTACTCCTGTGCTA 57.422 45.455 0.00 0.00 35.27 3.49
1868 2487 9.796120 GCTATACTATTAACCATGCTCTTAGAG 57.204 37.037 4.63 4.63 0.00 2.43
1870 2489 8.531982 TGGCTATACTATTAACCATGCTCTTAG 58.468 37.037 0.00 0.00 0.00 2.18
1874 2493 5.582665 GCTGGCTATACTATTAACCATGCTC 59.417 44.000 0.00 0.00 0.00 4.26
1875 2494 5.249393 AGCTGGCTATACTATTAACCATGCT 59.751 40.000 0.00 0.00 31.38 3.79
1876 2495 5.352569 CAGCTGGCTATACTATTAACCATGC 59.647 44.000 5.57 0.00 0.00 4.06
1877 2496 5.352569 GCAGCTGGCTATACTATTAACCATG 59.647 44.000 17.12 0.00 40.25 3.66
1878 2497 5.491982 GCAGCTGGCTATACTATTAACCAT 58.508 41.667 17.12 0.00 40.25 3.55
1879 2498 4.894784 GCAGCTGGCTATACTATTAACCA 58.105 43.478 17.12 0.00 40.25 3.67
1904 2523 3.797039 TGACATGTCACTGGCTTATAGC 58.203 45.455 24.56 0.00 36.04 2.97
1905 2524 5.851720 AGATGACATGTCACTGGCTTATAG 58.148 41.667 30.09 0.00 43.11 1.31
1906 2525 5.876651 AGATGACATGTCACTGGCTTATA 57.123 39.130 30.09 4.11 43.11 0.98
1907 2526 4.767578 AGATGACATGTCACTGGCTTAT 57.232 40.909 30.09 12.28 43.11 1.73
1908 2527 4.466015 TGTAGATGACATGTCACTGGCTTA 59.534 41.667 30.09 13.13 43.11 3.09
1909 2528 3.261643 TGTAGATGACATGTCACTGGCTT 59.738 43.478 30.09 13.83 43.11 4.35
1910 2529 2.833943 TGTAGATGACATGTCACTGGCT 59.166 45.455 30.09 23.69 43.11 4.75
1911 2530 3.251479 TGTAGATGACATGTCACTGGC 57.749 47.619 30.09 21.68 43.11 4.85
1912 2531 4.813161 GGATTGTAGATGACATGTCACTGG 59.187 45.833 30.09 0.00 43.11 4.00
1913 2532 5.422145 TGGATTGTAGATGACATGTCACTG 58.578 41.667 30.09 0.00 43.11 3.66
1914 2533 5.682234 TGGATTGTAGATGACATGTCACT 57.318 39.130 30.09 26.65 43.11 3.41
1915 2534 6.286758 AGATGGATTGTAGATGACATGTCAC 58.713 40.000 30.09 21.93 43.11 3.67
1916 2535 6.490241 AGATGGATTGTAGATGACATGTCA 57.510 37.500 29.67 29.67 44.59 3.58
1919 2538 9.096160 GCTATAAGATGGATTGTAGATGACATG 57.904 37.037 0.00 0.00 38.07 3.21
1920 2539 8.263640 GGCTATAAGATGGATTGTAGATGACAT 58.736 37.037 0.00 0.00 38.07 3.06
1921 2540 7.235399 TGGCTATAAGATGGATTGTAGATGACA 59.765 37.037 0.00 0.00 35.78 3.58
1922 2541 7.615403 TGGCTATAAGATGGATTGTAGATGAC 58.385 38.462 0.00 0.00 0.00 3.06
1923 2542 7.797121 TGGCTATAAGATGGATTGTAGATGA 57.203 36.000 0.00 0.00 0.00 2.92
1924 2543 7.879677 TGTTGGCTATAAGATGGATTGTAGATG 59.120 37.037 0.00 0.00 0.00 2.90
1925 2544 7.977818 TGTTGGCTATAAGATGGATTGTAGAT 58.022 34.615 0.00 0.00 0.00 1.98
1926 2545 7.373617 TGTTGGCTATAAGATGGATTGTAGA 57.626 36.000 0.00 0.00 0.00 2.59
1927 2546 7.663081 ACATGTTGGCTATAAGATGGATTGTAG 59.337 37.037 0.00 0.00 36.09 2.74
1928 2547 7.517320 ACATGTTGGCTATAAGATGGATTGTA 58.483 34.615 0.00 0.00 36.09 2.41
1929 2548 6.367983 ACATGTTGGCTATAAGATGGATTGT 58.632 36.000 0.00 0.00 36.09 2.71
1930 2549 6.889301 ACATGTTGGCTATAAGATGGATTG 57.111 37.500 0.00 0.00 36.09 2.67
1983 2602 5.544176 TGAAAGGTGGGCCACATAATAAAAA 59.456 36.000 35.69 10.35 35.86 1.94
1984 2603 5.087323 TGAAAGGTGGGCCACATAATAAAA 58.913 37.500 35.69 11.39 35.86 1.52
1985 2604 4.678256 TGAAAGGTGGGCCACATAATAAA 58.322 39.130 35.69 13.51 35.86 1.40
1986 2605 4.323569 TGAAAGGTGGGCCACATAATAA 57.676 40.909 35.69 13.98 35.86 1.40
1987 2606 4.534647 ATGAAAGGTGGGCCACATAATA 57.465 40.909 35.69 19.38 35.86 0.98
1988 2607 2.917713 TGAAAGGTGGGCCACATAAT 57.082 45.000 35.69 22.42 35.86 1.28
1989 2608 2.917713 ATGAAAGGTGGGCCACATAA 57.082 45.000 35.69 19.62 35.86 1.90
1990 2609 2.311542 AGAATGAAAGGTGGGCCACATA 59.688 45.455 35.69 16.77 35.86 2.29
1991 2610 1.077663 AGAATGAAAGGTGGGCCACAT 59.922 47.619 35.69 28.70 35.86 3.21
1992 2611 0.482446 AGAATGAAAGGTGGGCCACA 59.518 50.000 35.69 17.39 35.86 4.17
1993 2612 1.177401 GAGAATGAAAGGTGGGCCAC 58.823 55.000 28.69 28.69 37.19 5.01
1994 2613 0.776810 TGAGAATGAAAGGTGGGCCA 59.223 50.000 0.00 0.00 37.19 5.36
1995 2614 1.177401 GTGAGAATGAAAGGTGGGCC 58.823 55.000 0.00 0.00 0.00 5.80
1996 2615 1.909700 TGTGAGAATGAAAGGTGGGC 58.090 50.000 0.00 0.00 0.00 5.36
1997 2616 3.891366 ACTTTGTGAGAATGAAAGGTGGG 59.109 43.478 0.00 0.00 0.00 4.61
1998 2617 4.794003 GCACTTTGTGAGAATGAAAGGTGG 60.794 45.833 1.52 0.00 35.23 4.61
1999 2618 4.293415 GCACTTTGTGAGAATGAAAGGTG 58.707 43.478 1.52 0.00 35.23 4.00
2000 2619 3.319122 GGCACTTTGTGAGAATGAAAGGT 59.681 43.478 1.52 0.00 35.23 3.50
2001 2620 3.571401 AGGCACTTTGTGAGAATGAAAGG 59.429 43.478 1.52 0.00 35.23 3.11
2002 2621 4.843220 AGGCACTTTGTGAGAATGAAAG 57.157 40.909 1.52 0.00 35.23 2.62
2003 2622 4.761739 CCTAGGCACTTTGTGAGAATGAAA 59.238 41.667 0.00 0.00 41.75 2.69
2004 2623 4.041567 TCCTAGGCACTTTGTGAGAATGAA 59.958 41.667 2.96 0.00 41.75 2.57
2005 2624 3.582647 TCCTAGGCACTTTGTGAGAATGA 59.417 43.478 2.96 0.00 41.75 2.57
2006 2625 3.937706 CTCCTAGGCACTTTGTGAGAATG 59.062 47.826 2.96 0.00 41.75 2.67
2007 2626 3.620966 GCTCCTAGGCACTTTGTGAGAAT 60.621 47.826 2.96 0.00 41.75 2.40
2008 2627 2.289694 GCTCCTAGGCACTTTGTGAGAA 60.290 50.000 2.96 0.00 41.75 2.87
2009 2628 1.276421 GCTCCTAGGCACTTTGTGAGA 59.724 52.381 2.96 0.00 41.75 3.27
2010 2629 1.002430 TGCTCCTAGGCACTTTGTGAG 59.998 52.381 2.96 0.00 41.75 3.51
2011 2630 1.055849 TGCTCCTAGGCACTTTGTGA 58.944 50.000 2.96 0.00 41.75 3.58
2012 2631 3.631453 TGCTCCTAGGCACTTTGTG 57.369 52.632 2.96 0.00 41.75 3.33
2028 2647 3.191539 GCCAGCTCTAGCACGTGC 61.192 66.667 32.79 32.79 45.16 5.34
2029 2648 1.518133 GAGCCAGCTCTAGCACGTG 60.518 63.158 12.28 12.28 45.16 4.49
2030 2649 2.888863 GAGCCAGCTCTAGCACGT 59.111 61.111 12.42 0.00 45.16 4.49
2038 2657 0.244994 TCTTCGTGAAGAGCCAGCTC 59.755 55.000 11.78 11.78 42.06 4.09
2039 2658 2.355946 TCTTCGTGAAGAGCCAGCT 58.644 52.632 8.19 0.00 42.06 4.24
2040 2659 4.996976 TCTTCGTGAAGAGCCAGC 57.003 55.556 8.19 0.00 42.06 4.85
2046 2665 1.816863 AAGCGGGCTCTTCGTGAAGA 61.817 55.000 11.54 11.54 44.47 2.87
2047 2666 0.108804 TAAGCGGGCTCTTCGTGAAG 60.109 55.000 3.17 3.17 39.71 3.02
2048 2667 0.389426 GTAAGCGGGCTCTTCGTGAA 60.389 55.000 0.00 0.00 0.00 3.18
2049 2668 1.214589 GTAAGCGGGCTCTTCGTGA 59.785 57.895 0.00 0.00 0.00 4.35
2050 2669 1.810030 GGTAAGCGGGCTCTTCGTG 60.810 63.158 0.00 0.00 0.00 4.35
2051 2670 1.542187 AAGGTAAGCGGGCTCTTCGT 61.542 55.000 0.00 0.00 0.00 3.85
2052 2671 0.806492 GAAGGTAAGCGGGCTCTTCG 60.806 60.000 0.00 0.00 0.00 3.79
2053 2672 0.537653 AGAAGGTAAGCGGGCTCTTC 59.462 55.000 10.83 10.83 35.41 2.87
2054 2673 0.537653 GAGAAGGTAAGCGGGCTCTT 59.462 55.000 0.00 0.00 0.00 2.85
2055 2674 0.324830 AGAGAAGGTAAGCGGGCTCT 60.325 55.000 0.00 0.00 0.00 4.09
2056 2675 0.103390 GAGAGAAGGTAAGCGGGCTC 59.897 60.000 0.00 0.00 0.00 4.70
2057 2676 0.324830 AGAGAGAAGGTAAGCGGGCT 60.325 55.000 0.00 0.00 0.00 5.19
2058 2677 0.103390 GAGAGAGAAGGTAAGCGGGC 59.897 60.000 0.00 0.00 0.00 6.13
2059 2678 0.747852 GGAGAGAGAAGGTAAGCGGG 59.252 60.000 0.00 0.00 0.00 6.13
2060 2679 1.770294 AGGAGAGAGAAGGTAAGCGG 58.230 55.000 0.00 0.00 0.00 5.52
2061 2680 3.878160 AAAGGAGAGAGAAGGTAAGCG 57.122 47.619 0.00 0.00 0.00 4.68
2062 2681 5.186992 AGAGAAAAGGAGAGAGAAGGTAAGC 59.813 44.000 0.00 0.00 0.00 3.09
2063 2682 6.850752 AGAGAAAAGGAGAGAGAAGGTAAG 57.149 41.667 0.00 0.00 0.00 2.34
2064 2683 7.256368 GGAAAGAGAAAAGGAGAGAGAAGGTAA 60.256 40.741 0.00 0.00 0.00 2.85
2065 2684 6.211785 GGAAAGAGAAAAGGAGAGAGAAGGTA 59.788 42.308 0.00 0.00 0.00 3.08
2066 2685 5.012664 GGAAAGAGAAAAGGAGAGAGAAGGT 59.987 44.000 0.00 0.00 0.00 3.50
2067 2686 5.248248 AGGAAAGAGAAAAGGAGAGAGAAGG 59.752 44.000 0.00 0.00 0.00 3.46
2068 2687 6.358974 AGGAAAGAGAAAAGGAGAGAGAAG 57.641 41.667 0.00 0.00 0.00 2.85
2069 2688 5.247337 GGAGGAAAGAGAAAAGGAGAGAGAA 59.753 44.000 0.00 0.00 0.00 2.87
2070 2689 4.775253 GGAGGAAAGAGAAAAGGAGAGAGA 59.225 45.833 0.00 0.00 0.00 3.10
2071 2690 4.530161 TGGAGGAAAGAGAAAAGGAGAGAG 59.470 45.833 0.00 0.00 0.00 3.20
2072 2691 4.493618 TGGAGGAAAGAGAAAAGGAGAGA 58.506 43.478 0.00 0.00 0.00 3.10
2073 2692 4.899352 TGGAGGAAAGAGAAAAGGAGAG 57.101 45.455 0.00 0.00 0.00 3.20
2074 2693 4.660771 AGTTGGAGGAAAGAGAAAAGGAGA 59.339 41.667 0.00 0.00 0.00 3.71
2075 2694 4.979335 AGTTGGAGGAAAGAGAAAAGGAG 58.021 43.478 0.00 0.00 0.00 3.69
2076 2695 6.509523 TTAGTTGGAGGAAAGAGAAAAGGA 57.490 37.500 0.00 0.00 0.00 3.36
2077 2696 5.182190 GCTTAGTTGGAGGAAAGAGAAAAGG 59.818 44.000 0.00 0.00 0.00 3.11
2078 2697 5.765182 TGCTTAGTTGGAGGAAAGAGAAAAG 59.235 40.000 0.00 0.00 0.00 2.27
2079 2698 5.690865 TGCTTAGTTGGAGGAAAGAGAAAA 58.309 37.500 0.00 0.00 0.00 2.29
2080 2699 5.304686 TGCTTAGTTGGAGGAAAGAGAAA 57.695 39.130 0.00 0.00 0.00 2.52
2081 2700 4.974645 TGCTTAGTTGGAGGAAAGAGAA 57.025 40.909 0.00 0.00 0.00 2.87
2082 2701 4.974645 TTGCTTAGTTGGAGGAAAGAGA 57.025 40.909 0.00 0.00 0.00 3.10
2083 2702 6.391227 TTTTTGCTTAGTTGGAGGAAAGAG 57.609 37.500 0.00 0.00 36.14 2.85
2084 2703 6.976934 ATTTTTGCTTAGTTGGAGGAAAGA 57.023 33.333 0.00 0.00 36.14 2.52
2085 2704 9.788960 GTATATTTTTGCTTAGTTGGAGGAAAG 57.211 33.333 0.00 0.00 36.14 2.62
2086 2705 9.528489 AGTATATTTTTGCTTAGTTGGAGGAAA 57.472 29.630 0.00 0.00 33.47 3.13
2088 2707 9.832445 CTAGTATATTTTTGCTTAGTTGGAGGA 57.168 33.333 0.00 0.00 0.00 3.71
2089 2708 9.614792 ACTAGTATATTTTTGCTTAGTTGGAGG 57.385 33.333 0.00 0.00 0.00 4.30
2108 2727 9.273137 AGCAGGCTATATGGAATAAACTAGTAT 57.727 33.333 0.00 0.00 29.06 2.12
2109 2728 8.531982 CAGCAGGCTATATGGAATAAACTAGTA 58.468 37.037 0.00 0.00 29.06 1.82
2110 2729 7.235606 TCAGCAGGCTATATGGAATAAACTAGT 59.764 37.037 0.00 0.00 29.06 2.57
2111 2730 7.547370 GTCAGCAGGCTATATGGAATAAACTAG 59.453 40.741 0.00 0.00 29.06 2.57
2112 2731 7.235606 AGTCAGCAGGCTATATGGAATAAACTA 59.764 37.037 0.00 0.00 29.06 2.24
2113 2732 6.043706 AGTCAGCAGGCTATATGGAATAAACT 59.956 38.462 0.00 0.00 29.06 2.66
2114 2733 6.234177 AGTCAGCAGGCTATATGGAATAAAC 58.766 40.000 0.00 0.00 29.06 2.01
2115 2734 6.043127 TGAGTCAGCAGGCTATATGGAATAAA 59.957 38.462 0.00 0.00 29.06 1.40
2116 2735 5.543790 TGAGTCAGCAGGCTATATGGAATAA 59.456 40.000 0.00 0.00 29.06 1.40
2117 2736 5.086621 TGAGTCAGCAGGCTATATGGAATA 58.913 41.667 0.00 0.00 0.00 1.75
2118 2737 3.906218 TGAGTCAGCAGGCTATATGGAAT 59.094 43.478 0.00 0.00 0.00 3.01
2119 2738 3.308401 TGAGTCAGCAGGCTATATGGAA 58.692 45.455 0.00 0.00 0.00 3.53
2120 2739 2.962859 TGAGTCAGCAGGCTATATGGA 58.037 47.619 0.00 0.00 0.00 3.41
2121 2740 3.514706 AGATGAGTCAGCAGGCTATATGG 59.485 47.826 11.60 0.00 0.00 2.74
2122 2741 4.463539 AGAGATGAGTCAGCAGGCTATATG 59.536 45.833 11.60 0.00 0.00 1.78
2123 2742 4.676109 AGAGATGAGTCAGCAGGCTATAT 58.324 43.478 11.60 0.00 0.00 0.86
2124 2743 4.111255 AGAGATGAGTCAGCAGGCTATA 57.889 45.455 11.60 0.00 0.00 1.31
2125 2744 2.961510 AGAGATGAGTCAGCAGGCTAT 58.038 47.619 11.60 0.00 0.00 2.97
2126 2745 2.450867 AGAGATGAGTCAGCAGGCTA 57.549 50.000 11.60 0.00 0.00 3.93
2127 2746 2.450867 TAGAGATGAGTCAGCAGGCT 57.549 50.000 11.60 7.34 0.00 4.58
2128 2747 3.749665 AATAGAGATGAGTCAGCAGGC 57.250 47.619 11.60 0.00 0.00 4.85
2129 2748 7.701539 AGTATAATAGAGATGAGTCAGCAGG 57.298 40.000 11.60 0.00 0.00 4.85
2130 2749 7.541783 GCAAGTATAATAGAGATGAGTCAGCAG 59.458 40.741 11.60 0.00 0.00 4.24
2131 2750 7.232330 AGCAAGTATAATAGAGATGAGTCAGCA 59.768 37.037 11.60 0.00 0.00 4.41
2132 2751 7.601856 AGCAAGTATAATAGAGATGAGTCAGC 58.398 38.462 0.00 0.00 0.00 4.26
2133 2752 9.013229 AGAGCAAGTATAATAGAGATGAGTCAG 57.987 37.037 0.00 0.00 0.00 3.51
2134 2753 8.932434 AGAGCAAGTATAATAGAGATGAGTCA 57.068 34.615 0.00 0.00 0.00 3.41
2136 2755 9.800572 TGTAGAGCAAGTATAATAGAGATGAGT 57.199 33.333 0.00 0.00 0.00 3.41
2141 2760 9.503399 TCGAATGTAGAGCAAGTATAATAGAGA 57.497 33.333 0.00 0.00 0.00 3.10
2142 2761 9.767684 CTCGAATGTAGAGCAAGTATAATAGAG 57.232 37.037 0.00 0.00 0.00 2.43
2143 2762 8.731605 CCTCGAATGTAGAGCAAGTATAATAGA 58.268 37.037 0.00 0.00 34.56 1.98
2144 2763 7.486551 GCCTCGAATGTAGAGCAAGTATAATAG 59.513 40.741 0.00 0.00 34.56 1.73
2145 2764 7.176865 AGCCTCGAATGTAGAGCAAGTATAATA 59.823 37.037 0.00 0.00 34.56 0.98
2146 2765 6.015010 AGCCTCGAATGTAGAGCAAGTATAAT 60.015 38.462 0.00 0.00 34.56 1.28
2147 2766 5.302059 AGCCTCGAATGTAGAGCAAGTATAA 59.698 40.000 0.00 0.00 34.56 0.98
2148 2767 4.827835 AGCCTCGAATGTAGAGCAAGTATA 59.172 41.667 0.00 0.00 34.56 1.47
2149 2768 3.639094 AGCCTCGAATGTAGAGCAAGTAT 59.361 43.478 0.00 0.00 34.56 2.12
2150 2769 3.024547 AGCCTCGAATGTAGAGCAAGTA 58.975 45.455 0.00 0.00 34.56 2.24
2151 2770 1.827969 AGCCTCGAATGTAGAGCAAGT 59.172 47.619 0.00 0.00 34.56 3.16
2152 2771 2.100584 AGAGCCTCGAATGTAGAGCAAG 59.899 50.000 0.00 0.00 34.56 4.01
2153 2772 2.103373 AGAGCCTCGAATGTAGAGCAA 58.897 47.619 0.00 0.00 34.56 3.91
2154 2773 1.769026 AGAGCCTCGAATGTAGAGCA 58.231 50.000 0.00 0.00 34.56 4.26
2155 2774 2.880963 AAGAGCCTCGAATGTAGAGC 57.119 50.000 0.00 0.00 34.56 4.09
2156 2775 4.748892 TGAAAAGAGCCTCGAATGTAGAG 58.251 43.478 0.00 0.00 35.60 2.43
2157 2776 4.801330 TGAAAAGAGCCTCGAATGTAGA 57.199 40.909 0.00 0.00 0.00 2.59
2158 2777 6.428385 AAATGAAAAGAGCCTCGAATGTAG 57.572 37.500 0.00 0.00 0.00 2.74
2159 2778 6.655003 AGAAAATGAAAAGAGCCTCGAATGTA 59.345 34.615 0.00 0.00 0.00 2.29
2160 2779 5.474876 AGAAAATGAAAAGAGCCTCGAATGT 59.525 36.000 0.00 0.00 0.00 2.71
2161 2780 5.947443 AGAAAATGAAAAGAGCCTCGAATG 58.053 37.500 0.00 0.00 0.00 2.67
2165 2784 4.848299 CGAAAGAAAATGAAAAGAGCCTCG 59.152 41.667 0.00 0.00 0.00 4.63
2199 2825 1.859427 GACCGACAGCACCGAGTACA 61.859 60.000 0.00 0.00 0.00 2.90
2260 2886 5.115021 GGTCGACAATTGATTTTCGTTTCAC 59.885 40.000 18.91 5.04 33.20 3.18
2282 2908 9.533831 AAATCTGTCTAAAACATAAATGAGGGT 57.466 29.630 0.00 0.00 37.23 4.34
2299 2965 9.268268 TGAACAATAAACTCGTAAAATCTGTCT 57.732 29.630 0.00 0.00 0.00 3.41
2331 3001 9.739276 AAAGAATGATGGAAATTCTACACAGTA 57.261 29.630 0.00 0.00 42.26 2.74
2379 3049 8.842358 ATATACAACTCTCTGTTTCGGAAAAA 57.158 30.769 4.46 0.00 36.63 1.94
2380 3050 8.842358 AATATACAACTCTCTGTTTCGGAAAA 57.158 30.769 4.46 0.00 36.63 2.29
2381 3051 8.842358 AAATATACAACTCTCTGTTTCGGAAA 57.158 30.769 0.00 0.00 36.63 3.13
2382 3052 8.842358 AAAATATACAACTCTCTGTTTCGGAA 57.158 30.769 0.00 0.00 36.63 4.30
2383 3053 8.842358 AAAAATATACAACTCTCTGTTTCGGA 57.158 30.769 0.00 0.00 36.63 4.55
2425 3095 7.444299 ACAGTTTGTGCCAATTAATTCAGATT 58.556 30.769 0.00 0.00 0.00 2.40
2426 3096 6.996509 ACAGTTTGTGCCAATTAATTCAGAT 58.003 32.000 0.00 0.00 0.00 2.90
2429 3099 8.797438 TGTATACAGTTTGTGCCAATTAATTCA 58.203 29.630 0.08 0.00 0.00 2.57
2432 3102 9.585099 CATTGTATACAGTTTGTGCCAATTAAT 57.415 29.630 5.56 0.00 0.00 1.40
2433 3103 7.543868 GCATTGTATACAGTTTGTGCCAATTAA 59.456 33.333 5.56 0.00 0.00 1.40
2434 3104 7.032580 GCATTGTATACAGTTTGTGCCAATTA 58.967 34.615 5.56 0.00 0.00 1.40
2437 3107 4.279420 TGCATTGTATACAGTTTGTGCCAA 59.721 37.500 18.16 6.24 0.00 4.52
2438 3108 3.823304 TGCATTGTATACAGTTTGTGCCA 59.177 39.130 18.16 9.67 0.00 4.92
2439 3109 4.433186 TGCATTGTATACAGTTTGTGCC 57.567 40.909 18.16 8.12 0.00 5.01
2442 3112 8.885494 AATGTTTTGCATTGTATACAGTTTGT 57.115 26.923 5.56 0.00 45.35 2.83
2495 3244 5.178438 AGCACGACAACAACAACAAAAATTT 59.822 32.000 0.00 0.00 0.00 1.82
2499 3248 3.057876 AGAGCACGACAACAACAACAAAA 60.058 39.130 0.00 0.00 0.00 2.44
2500 3249 2.486203 AGAGCACGACAACAACAACAAA 59.514 40.909 0.00 0.00 0.00 2.83
2501 3250 2.080693 AGAGCACGACAACAACAACAA 58.919 42.857 0.00 0.00 0.00 2.83
2502 3251 1.732941 AGAGCACGACAACAACAACA 58.267 45.000 0.00 0.00 0.00 3.33
2503 3252 2.095213 TCAAGAGCACGACAACAACAAC 59.905 45.455 0.00 0.00 0.00 3.32
2504 3253 2.351455 TCAAGAGCACGACAACAACAA 58.649 42.857 0.00 0.00 0.00 2.83
2505 3254 2.017138 TCAAGAGCACGACAACAACA 57.983 45.000 0.00 0.00 0.00 3.33
2506 3255 3.609103 AATCAAGAGCACGACAACAAC 57.391 42.857 0.00 0.00 0.00 3.32
2507 3256 3.376859 ACAAATCAAGAGCACGACAACAA 59.623 39.130 0.00 0.00 0.00 2.83
2514 3263 2.313234 CTGCAACAAATCAAGAGCACG 58.687 47.619 0.00 0.00 0.00 5.34
2523 3272 8.689251 TCGTATATAGATAGCTGCAACAAATC 57.311 34.615 1.02 0.00 0.00 2.17
2531 3280 6.928979 TCCTCTTCGTATATAGATAGCTGC 57.071 41.667 0.00 0.00 0.00 5.25
2532 3281 9.729023 CAATTCCTCTTCGTATATAGATAGCTG 57.271 37.037 0.00 0.00 0.00 4.24
2533 3282 9.688091 TCAATTCCTCTTCGTATATAGATAGCT 57.312 33.333 0.00 0.00 0.00 3.32
2555 3305 5.003096 ACTGTCCCTCCATTTCTTTCAAT 57.997 39.130 0.00 0.00 0.00 2.57
2597 3347 5.662657 TGATGATCATTACCTCCTGAGTGAA 59.337 40.000 10.14 0.00 0.00 3.18
2616 3366 9.179552 CAGAAAAACATCGTTACATTTTGATGA 57.820 29.630 7.94 0.00 40.45 2.92
2617 3367 9.179552 TCAGAAAAACATCGTTACATTTTGATG 57.820 29.630 0.00 0.00 42.95 3.07
2624 3374 6.403200 CGGGATTCAGAAAAACATCGTTACAT 60.403 38.462 0.00 0.00 0.00 2.29
2626 3376 5.321516 CGGGATTCAGAAAAACATCGTTAC 58.678 41.667 0.00 0.00 0.00 2.50
2627 3377 4.142773 GCGGGATTCAGAAAAACATCGTTA 60.143 41.667 0.00 0.00 0.00 3.18
2629 3379 2.161609 GCGGGATTCAGAAAAACATCGT 59.838 45.455 0.00 0.00 0.00 3.73
2630 3380 2.420022 AGCGGGATTCAGAAAAACATCG 59.580 45.455 0.00 0.00 0.00 3.84
2631 3381 3.181496 GGAGCGGGATTCAGAAAAACATC 60.181 47.826 0.00 0.00 0.00 3.06
2632 3382 2.755103 GGAGCGGGATTCAGAAAAACAT 59.245 45.455 0.00 0.00 0.00 2.71
2634 3384 1.472878 GGGAGCGGGATTCAGAAAAAC 59.527 52.381 0.00 0.00 0.00 2.43
2637 3390 1.607612 GGGGAGCGGGATTCAGAAA 59.392 57.895 0.00 0.00 0.00 2.52
2640 3393 2.330924 GAAGGGGGAGCGGGATTCAG 62.331 65.000 0.00 0.00 0.00 3.02
2646 3399 2.821679 GAAACTGAAGGGGGAGCGGG 62.822 65.000 0.00 0.00 0.00 6.13
2647 3400 1.377333 GAAACTGAAGGGGGAGCGG 60.377 63.158 0.00 0.00 0.00 5.52
2666 3419 2.789409 AGTCCCATGTGCTTTCTACC 57.211 50.000 0.00 0.00 0.00 3.18
2674 3427 6.019779 TGTATTTGTTTAAGTCCCATGTGC 57.980 37.500 0.00 0.00 0.00 4.57
2675 3428 9.139174 GATTTGTATTTGTTTAAGTCCCATGTG 57.861 33.333 0.00 0.00 0.00 3.21
2696 3449 8.585018 AGGGAGTATGGTTTGTTTTAAGATTTG 58.415 33.333 0.00 0.00 0.00 2.32
2700 3453 6.183361 TGGAGGGAGTATGGTTTGTTTTAAGA 60.183 38.462 0.00 0.00 0.00 2.10
2708 3461 3.053693 TGGAATGGAGGGAGTATGGTTTG 60.054 47.826 0.00 0.00 0.00 2.93
2715 3468 7.350921 AGAGATATTTTTGGAATGGAGGGAGTA 59.649 37.037 0.00 0.00 0.00 2.59
2717 3470 6.489361 CAGAGATATTTTTGGAATGGAGGGAG 59.511 42.308 0.00 0.00 0.00 4.30
2719 3472 6.131961 ACAGAGATATTTTTGGAATGGAGGG 58.868 40.000 0.00 0.00 0.00 4.30
2720 3473 8.624776 GTTACAGAGATATTTTTGGAATGGAGG 58.375 37.037 0.00 0.00 0.00 4.30
2721 3474 9.401058 AGTTACAGAGATATTTTTGGAATGGAG 57.599 33.333 0.00 0.00 0.00 3.86
2806 3559 9.218440 GGACATCAGTACTACTACCTCTATAAC 57.782 40.741 0.00 0.00 0.00 1.89
2807 3560 8.942033 TGGACATCAGTACTACTACCTCTATAA 58.058 37.037 0.00 0.00 0.00 0.98
2808 3561 8.502047 TGGACATCAGTACTACTACCTCTATA 57.498 38.462 0.00 0.00 0.00 1.31
2809 3562 7.390013 TGGACATCAGTACTACTACCTCTAT 57.610 40.000 0.00 0.00 0.00 1.98
2810 3563 6.819947 TGGACATCAGTACTACTACCTCTA 57.180 41.667 0.00 0.00 0.00 2.43
2811 3564 5.712084 TGGACATCAGTACTACTACCTCT 57.288 43.478 0.00 0.00 0.00 3.69
2812 3565 6.770746 TTTGGACATCAGTACTACTACCTC 57.229 41.667 0.00 0.00 0.00 3.85
2813 3566 7.735326 ATTTTGGACATCAGTACTACTACCT 57.265 36.000 0.00 0.00 0.00 3.08
2814 3567 8.788325 AAATTTTGGACATCAGTACTACTACC 57.212 34.615 0.00 0.00 0.00 3.18
2938 3691 5.643777 CGGTGGAGAAATCTAGTTTGATGTT 59.356 40.000 0.00 0.00 0.00 2.71
2944 3697 3.368116 CGGACGGTGGAGAAATCTAGTTT 60.368 47.826 0.00 0.00 0.00 2.66
2948 3701 2.133281 TCGGACGGTGGAGAAATCTA 57.867 50.000 0.00 0.00 0.00 1.98
2961 3714 1.136169 GTTTGAAATCCCGTTCGGACG 60.136 52.381 9.95 9.95 46.09 4.79
2977 3730 4.703897 TCAAGTTACTCTCCTGTGGTTTG 58.296 43.478 0.00 0.00 0.00 2.93
2983 3736 8.519799 TTTTCAAAATCAAGTTACTCTCCTGT 57.480 30.769 0.00 0.00 0.00 4.00
2986 3739 9.581099 TTGTTTTTCAAAATCAAGTTACTCTCC 57.419 29.630 2.75 0.00 32.64 3.71
3030 3787 5.757320 TGCCTGTAAAATTTGTTGTGAATGG 59.243 36.000 0.00 0.00 0.00 3.16
3045 3802 2.746904 CCGTTGTGATGATGCCTGTAAA 59.253 45.455 0.00 0.00 0.00 2.01
3139 3900 9.910267 TGGAAGGAGGTTAATTTATAAAGGTAC 57.090 33.333 3.94 1.75 0.00 3.34
3157 3918 4.070716 GAGGCATGATATTGTGGAAGGAG 58.929 47.826 0.00 0.00 0.00 3.69
3176 3937 4.561735 TTTTGTGGTTTCGCTAAAGAGG 57.438 40.909 0.00 0.00 0.00 3.69
3205 3966 2.813179 CGTTGCGATGCTACTGGCC 61.813 63.158 0.00 0.00 40.92 5.36
3281 4042 9.408648 TGAACAGTCTCACTCATTATCTATGTA 57.591 33.333 0.00 0.00 35.64 2.29
3283 4044 9.194271 CATGAACAGTCTCACTCATTATCTATG 57.806 37.037 0.00 0.00 35.45 2.23
3284 4045 9.140874 TCATGAACAGTCTCACTCATTATCTAT 57.859 33.333 0.00 0.00 0.00 1.98
3291 4058 4.694509 GCTTTCATGAACAGTCTCACTCAT 59.305 41.667 7.89 0.00 0.00 2.90
3357 4133 2.166664 GCTGGTACTGGTCTAGGACTTG 59.833 54.545 0.00 0.00 40.36 3.16
3358 4134 2.225293 TGCTGGTACTGGTCTAGGACTT 60.225 50.000 0.00 0.00 40.36 3.01
3420 4196 1.270826 ACTGTGAGTCTGTGATGGTCG 59.729 52.381 0.00 0.00 0.00 4.79
3429 4205 2.560542 ACTAAGCTGGACTGTGAGTCTG 59.439 50.000 3.85 0.00 44.46 3.51
3430 4206 2.560542 CACTAAGCTGGACTGTGAGTCT 59.439 50.000 3.85 0.00 44.46 3.24
3431 4207 2.928731 GCACTAAGCTGGACTGTGAGTC 60.929 54.545 0.00 0.00 41.51 3.36
3432 4208 1.001406 GCACTAAGCTGGACTGTGAGT 59.999 52.381 0.00 0.00 41.15 3.41
3433 4209 1.674221 GGCACTAAGCTGGACTGTGAG 60.674 57.143 0.00 0.00 44.79 3.51
3434 4210 0.321671 GGCACTAAGCTGGACTGTGA 59.678 55.000 0.00 0.00 44.79 3.58
3435 4211 0.322975 AGGCACTAAGCTGGACTGTG 59.677 55.000 0.00 0.00 44.79 3.66
3436 4212 1.827969 CTAGGCACTAAGCTGGACTGT 59.172 52.381 0.00 0.00 42.17 3.55
3454 4230 3.879295 GCTTGTGCTTAATGAGGCATCTA 59.121 43.478 0.00 0.00 40.66 1.98
3458 4234 0.804364 CGCTTGTGCTTAATGAGGCA 59.196 50.000 0.00 0.00 36.97 4.75
3539 4315 2.957006 AGCCTAATCGTAGTACACCTGG 59.043 50.000 0.38 0.00 0.00 4.45
3587 4364 1.819229 CTCCGACTGTGATGGGGAG 59.181 63.158 0.00 0.00 38.43 4.30
3656 4483 1.523758 GCTGGAATTCTGGACGTTGT 58.476 50.000 5.23 0.00 0.00 3.32
3665 4492 3.384668 CGACATATCACGCTGGAATTCT 58.615 45.455 5.23 0.00 0.00 2.40
3718 4545 2.099141 TGTGCATGTGTTCTCTAGGC 57.901 50.000 0.00 0.00 0.00 3.93
3767 4602 8.173775 GTCTTATAAAAAGTAAAAGAGGCGGTC 58.826 37.037 0.00 0.00 0.00 4.79
3779 4614 8.816640 ACTCCGAAAACGTCTTATAAAAAGTA 57.183 30.769 0.00 0.00 0.00 2.24
3800 4635 5.694006 GTGTTCATAGCATGATACTGACTCC 59.306 44.000 0.00 0.00 39.39 3.85
3834 4669 1.485066 CACCTACAACCCCGAAGCTAT 59.515 52.381 0.00 0.00 0.00 2.97
3870 4705 9.770097 TTCACTCTGTAATTCATTATGGAGATC 57.230 33.333 13.77 0.00 32.88 2.75
3927 4762 1.807886 CTCTGCCATTGCTTGCTCC 59.192 57.895 0.00 0.00 38.71 4.70
3964 4799 3.418047 CCAACTAACCGGAATTGGAACT 58.582 45.455 9.46 0.00 43.66 3.01
3966 4801 2.555670 CCCCAACTAACCGGAATTGGAA 60.556 50.000 23.32 0.00 43.66 3.53
4050 4893 4.065088 GGTGTGAACAGTGCTGATCTTTA 58.935 43.478 6.17 0.00 34.07 1.85
4096 4939 2.959030 TCCGATCACAATCAGGTCTAGG 59.041 50.000 0.00 0.00 31.55 3.02
4137 4996 7.468141 AGAATCATATAACAGCCTACGATCA 57.532 36.000 0.00 0.00 0.00 2.92
4141 5000 8.462811 AGTCATAGAATCATATAACAGCCTACG 58.537 37.037 0.00 0.00 0.00 3.51
4195 5073 9.968870 AACGTAAATTCTGCTAACCAAAATTTA 57.031 25.926 0.00 0.00 33.12 1.40
4196 5074 8.880878 AACGTAAATTCTGCTAACCAAAATTT 57.119 26.923 0.00 0.00 34.76 1.82
4203 5083 6.369615 TGGTAGAAACGTAAATTCTGCTAACC 59.630 38.462 13.80 11.65 38.88 2.85
4250 5142 9.507329 GAAGCTCCAATGATAGGATTGTAAATA 57.493 33.333 0.00 0.00 33.99 1.40
4255 5147 4.101585 TCGAAGCTCCAATGATAGGATTGT 59.898 41.667 0.00 0.00 33.99 2.71
4257 5149 4.963318 TCGAAGCTCCAATGATAGGATT 57.037 40.909 0.00 0.00 33.99 3.01
4266 5158 1.067821 GAGTCCGATCGAAGCTCCAAT 59.932 52.381 18.66 0.00 0.00 3.16
4268 5160 0.679960 TGAGTCCGATCGAAGCTCCA 60.680 55.000 18.66 3.82 0.00 3.86
4276 5168 0.713883 CGTGGTTTTGAGTCCGATCG 59.286 55.000 8.51 8.51 0.00 3.69
4365 5259 2.724174 GCTTAAACGACGCAGCATTTTT 59.276 40.909 0.00 0.00 32.17 1.94
4366 5260 2.315901 GCTTAAACGACGCAGCATTTT 58.684 42.857 0.00 0.00 32.17 1.82
4367 5261 1.724654 CGCTTAAACGACGCAGCATTT 60.725 47.619 0.00 0.00 34.06 2.32
4368 5262 0.179225 CGCTTAAACGACGCAGCATT 60.179 50.000 0.00 0.00 34.06 3.56
4369 5263 1.011968 TCGCTTAAACGACGCAGCAT 61.012 50.000 0.00 0.00 37.09 3.79
4370 5264 1.011968 ATCGCTTAAACGACGCAGCA 61.012 50.000 2.57 0.00 46.28 4.41
4371 5265 0.314339 GATCGCTTAAACGACGCAGC 60.314 55.000 2.57 0.00 46.28 5.25
4372 5266 1.269166 AGATCGCTTAAACGACGCAG 58.731 50.000 2.57 0.00 46.28 5.18
4373 5267 2.547913 TAGATCGCTTAAACGACGCA 57.452 45.000 2.57 0.00 46.28 5.24
4374 5268 3.418897 CGATTAGATCGCTTAAACGACGC 60.419 47.826 2.57 0.00 46.28 5.19
4375 5269 4.261885 CGATTAGATCGCTTAAACGACG 57.738 45.455 2.57 0.00 46.28 5.12
4988 5885 3.755628 GCGTAGGCGGACAGGTCA 61.756 66.667 1.41 0.00 38.78 4.02
5009 5906 2.435234 TCGAAATGGAACGCCGGG 60.435 61.111 2.18 0.00 36.79 5.73
5021 5918 2.688507 GATCACAAGTCCAGCTCGAAA 58.311 47.619 0.00 0.00 0.00 3.46
5058 5955 0.179100 CGTATCAGTCTGGCCAGTGG 60.179 60.000 31.58 21.09 0.00 4.00
5059 5956 0.807667 GCGTATCAGTCTGGCCAGTG 60.808 60.000 31.58 23.19 0.00 3.66
5060 5957 1.517832 GCGTATCAGTCTGGCCAGT 59.482 57.895 31.58 15.21 0.00 4.00
5062 5959 2.494445 CGCGTATCAGTCTGGCCA 59.506 61.111 4.71 4.71 0.00 5.36
5063 5960 2.962253 GCGCGTATCAGTCTGGCC 60.962 66.667 8.43 0.00 0.00 5.36
5065 5962 0.530650 AATGGCGCGTATCAGTCTGG 60.531 55.000 8.43 0.00 0.00 3.86
5101 5998 0.338120 GACAAAATCCCCCATCCCCA 59.662 55.000 0.00 0.00 0.00 4.96
5106 6003 4.898014 TCCTATTGACAAAATCCCCCAT 57.102 40.909 0.00 0.00 0.00 4.00
5180 6077 0.894141 CAGTCCTCACTAGCTGCACT 59.106 55.000 1.02 0.00 0.00 4.40
5354 6251 9.014297 ACTTGAAATGGAAGAATCTTCGTAAAT 57.986 29.630 15.88 5.37 0.00 1.40
5355 6252 8.391075 ACTTGAAATGGAAGAATCTTCGTAAA 57.609 30.769 15.88 3.36 0.00 2.01
5358 6255 5.997746 TGACTTGAAATGGAAGAATCTTCGT 59.002 36.000 15.88 6.31 0.00 3.85
5379 6286 7.428826 AGAACAAATCCTGAACTTCAAATGAC 58.571 34.615 0.00 0.00 0.00 3.06
5381 6288 9.403110 CTTAGAACAAATCCTGAACTTCAAATG 57.597 33.333 0.00 0.00 0.00 2.32
5459 6366 5.639082 TCCGCACTACATATATTTCATGCTG 59.361 40.000 0.00 2.36 0.00 4.41
5460 6367 5.793817 TCCGCACTACATATATTTCATGCT 58.206 37.500 0.00 0.00 0.00 3.79
5461 6368 5.869344 TCTCCGCACTACATATATTTCATGC 59.131 40.000 0.00 0.00 0.00 4.06
5489 6404 7.680442 AACTTTTAGTTTGCCAAATGTTTGT 57.320 28.000 0.00 0.00 34.11 2.83
5490 6405 8.119845 GGTAACTTTTAGTTTGCCAAATGTTTG 58.880 33.333 0.00 0.00 39.51 2.93
5594 6513 1.633852 GCTTCTGCAGCTTCGACCTG 61.634 60.000 9.47 7.69 46.27 4.00
5595 6514 1.375268 GCTTCTGCAGCTTCGACCT 60.375 57.895 9.47 0.00 46.27 3.85
5596 6515 3.172919 GCTTCTGCAGCTTCGACC 58.827 61.111 9.47 0.00 46.27 4.79
5604 6523 2.680312 TTACTAGCCAGCTTCTGCAG 57.320 50.000 7.63 7.63 42.74 4.41
5605 6524 2.501316 TGATTACTAGCCAGCTTCTGCA 59.499 45.455 0.00 0.00 42.74 4.41
5606 6525 2.869192 GTGATTACTAGCCAGCTTCTGC 59.131 50.000 0.00 0.00 40.05 4.26
5607 6526 4.118410 CTGTGATTACTAGCCAGCTTCTG 58.882 47.826 0.00 0.00 0.00 3.02
5608 6527 3.133721 CCTGTGATTACTAGCCAGCTTCT 59.866 47.826 0.00 0.00 0.00 2.85
5609 6528 3.462021 CCTGTGATTACTAGCCAGCTTC 58.538 50.000 0.00 0.00 0.00 3.86
5610 6529 2.420687 GCCTGTGATTACTAGCCAGCTT 60.421 50.000 0.00 0.00 0.00 3.74
5611 6530 1.139853 GCCTGTGATTACTAGCCAGCT 59.860 52.381 0.00 0.00 0.00 4.24
5612 6531 1.587547 GCCTGTGATTACTAGCCAGC 58.412 55.000 0.00 0.00 0.00 4.85
5613 6532 1.409064 TCGCCTGTGATTACTAGCCAG 59.591 52.381 0.00 0.00 0.00 4.85
5614 6533 1.409064 CTCGCCTGTGATTACTAGCCA 59.591 52.381 0.00 0.00 0.00 4.75
5649 6568 3.110178 CCGTCCGTCCGCAACTTC 61.110 66.667 0.00 0.00 0.00 3.01
5764 6692 1.685765 CTGTCCCCCGAGATCCACA 60.686 63.158 0.00 0.00 0.00 4.17
6201 7141 2.049063 AGCGCGAGACAAGACCAC 60.049 61.111 12.10 0.00 0.00 4.16
6208 7153 3.282745 GAGTTCCCAGCGCGAGACA 62.283 63.158 12.10 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.