Multiple sequence alignment - TraesCS5B01G219900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G219900 chr5B 100.000 4567 0 0 3244 7810 394022912 394018346 0.000000e+00 8434
1 TraesCS5B01G219900 chr5B 100.000 3002 0 0 1 3002 394026155 394023154 0.000000e+00 5544
2 TraesCS5B01G219900 chr5A 95.971 2656 75 24 3244 5884 437223931 437221293 0.000000e+00 4283
3 TraesCS5B01G219900 chr5A 89.158 1365 70 36 713 2007 437226592 437225236 0.000000e+00 1629
4 TraesCS5B01G219900 chr5A 96.865 925 24 2 6120 7039 437220919 437219995 0.000000e+00 1543
5 TraesCS5B01G219900 chr5A 95.530 962 33 5 2047 3002 437225239 437224282 0.000000e+00 1530
6 TraesCS5B01G219900 chr5A 86.413 736 80 12 1 718 437230059 437229326 0.000000e+00 787
7 TraesCS5B01G219900 chr5A 91.799 378 16 10 7072 7448 437219989 437219626 5.400000e-141 512
8 TraesCS5B01G219900 chr5A 93.529 340 21 1 7472 7810 437219549 437219210 9.040000e-139 505
9 TraesCS5B01G219900 chr5A 93.023 215 15 0 5906 6120 437221216 437221002 1.640000e-81 315
10 TraesCS5B01G219900 chr5A 94.048 84 4 1 705 788 437226995 437226913 8.230000e-25 126
11 TraesCS5B01G219900 chr5D 95.007 1402 56 10 4192 5583 336062107 336060710 0.000000e+00 2189
12 TraesCS5B01G219900 chr5D 91.201 1182 46 16 933 2067 336065138 336063968 0.000000e+00 1554
13 TraesCS5B01G219900 chr5D 97.342 903 18 3 6143 7039 336059691 336058789 0.000000e+00 1530
14 TraesCS5B01G219900 chr5D 97.022 873 16 5 2134 3000 336063968 336063100 0.000000e+00 1459
15 TraesCS5B01G219900 chr5D 96.036 782 23 4 3248 4021 336062889 336062108 0.000000e+00 1266
16 TraesCS5B01G219900 chr5D 88.147 734 67 13 1 716 336068940 336068209 0.000000e+00 856
17 TraesCS5B01G219900 chr5D 91.799 378 17 9 7072 7448 336058783 336058419 1.500000e-141 514
18 TraesCS5B01G219900 chr5D 93.805 339 21 0 7472 7810 336058340 336058002 1.940000e-140 510
19 TraesCS5B01G219900 chr5D 93.200 250 11 6 5638 5884 336060328 336060082 5.760000e-96 363
20 TraesCS5B01G219900 chr5D 93.953 215 13 0 5906 6120 336060005 336059791 7.560000e-85 326
21 TraesCS5B01G219900 chr5D 82.422 256 21 12 713 947 336065410 336065158 1.330000e-47 202
22 TraesCS5B01G219900 chr5D 94.737 76 4 0 713 788 336065770 336065695 1.380000e-22 119
23 TraesCS5B01G219900 chr3A 93.077 130 9 0 4020 4149 627964921 627965050 2.880000e-44 191
24 TraesCS5B01G219900 chr3A 86.034 179 20 4 4018 4195 663433453 663433627 3.720000e-43 187
25 TraesCS5B01G219900 chr3A 90.780 141 10 3 4014 4153 585297974 585298112 1.340000e-42 185
26 TraesCS5B01G219900 chr3A 86.207 174 18 3 4023 4195 186850953 186851121 4.810000e-42 183
27 TraesCS5B01G219900 chr2A 91.304 138 10 2 4014 4149 696850885 696850748 3.720000e-43 187
28 TraesCS5B01G219900 chr1B 86.127 173 20 3 4023 4195 364115946 364116114 4.810000e-42 183
29 TraesCS5B01G219900 chr3D 87.117 163 15 6 3987 4149 375693801 375693957 6.230000e-41 180
30 TraesCS5B01G219900 chr2B 83.516 182 22 5 4015 4195 686324252 686324078 6.270000e-36 163
31 TraesCS5B01G219900 chr4B 82.486 177 18 3 4020 4196 93286458 93286621 8.170000e-30 143
32 TraesCS5B01G219900 chr4B 82.759 145 10 8 4068 4212 396518807 396518936 1.780000e-21 115
33 TraesCS5B01G219900 chr1A 85.000 80 5 4 713 785 493102973 493102894 3.020000e-09 75


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G219900 chr5B 394018346 394026155 7809 True 6989.000000 8434 100.000000 1 7810 2 chr5B.!!$R1 7809
1 TraesCS5B01G219900 chr5A 437219210 437230059 10849 True 1247.777778 4283 92.926222 1 7810 9 chr5A.!!$R1 7809
2 TraesCS5B01G219900 chr5D 336058002 336068940 10938 True 907.333333 2189 92.889250 1 7810 12 chr5D.!!$R1 7809

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
579 598 0.171007 ATTTCGAATGCAACTGCGGG 59.829 50.000 0.00 0.0 45.83 6.13 F
816 3287 0.184692 TCAAAGTGTCCACATGCCCA 59.815 50.000 0.00 0.0 0.00 5.36 F
817 3288 0.314935 CAAAGTGTCCACATGCCCAC 59.685 55.000 0.00 0.0 0.00 4.61 F
1448 4390 0.325296 AACTACCTCAGCATCCCGGA 60.325 55.000 0.73 0.0 0.00 5.14 F
1787 4776 0.326264 GGGTGGTGATTCTCTGCAGT 59.674 55.000 14.67 0.0 0.00 4.40 F
2992 5987 1.134818 TGTAAGCGGTACTGCATCTGG 60.135 52.381 27.85 0.0 37.31 3.86 F
4256 7370 2.306805 TCTGCACAATCATTCCACTCCT 59.693 45.455 0.00 0.0 0.00 3.69 F
5200 8322 0.100325 CGGCAACAGCAACTTGTTCA 59.900 50.000 0.00 0.0 39.17 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2525 5514 0.657840 GGGAGATATTGTGTGTGCGC 59.342 55.000 0.00 0.00 0.00 6.09 R
2526 5515 2.022764 TGGGAGATATTGTGTGTGCG 57.977 50.000 0.00 0.00 0.00 5.34 R
2797 5789 2.501492 AGGCATGCCTGAAATGAGC 58.499 52.632 38.23 6.81 46.22 4.26 R
3304 6408 4.756135 AGGCAATGGTTTTAAAGTTGCATG 59.244 37.500 20.83 0.00 45.07 4.06 R
3784 6894 3.256383 TGGCCAGAGAAACAAATCACATG 59.744 43.478 0.00 0.00 0.00 3.21 R
4676 7798 1.745653 GGTGGCCTCTGCAATAACTTC 59.254 52.381 3.32 0.00 40.13 3.01 R
5898 9394 0.550914 TTGGAAGGGAACAGCACACT 59.449 50.000 0.00 0.00 0.00 3.55 R
7049 10772 0.251787 TGGAGCAGCCACTGAGAGTA 60.252 55.000 0.00 0.00 43.33 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 1.569653 AGTTAGGGTGTAGAGTGGGC 58.430 55.000 0.00 0.00 0.00 5.36
40 41 1.078989 AGTTAGGGTGTAGAGTGGGCT 59.921 52.381 0.00 0.00 0.00 5.19
71 73 4.110426 ACCTCATAGGAAGACCTCCCATAT 59.890 45.833 0.00 0.00 46.81 1.78
78 80 9.218525 CATAGGAAGACCTCCCATATTACATAT 57.781 37.037 0.00 0.00 46.81 1.78
82 84 6.702449 AGACCTCCCATATTACATATGCAA 57.298 37.500 1.58 0.00 40.96 4.08
93 95 5.818136 TTACATATGCAAAGAGAACTGGC 57.182 39.130 1.58 0.00 0.00 4.85
104 106 4.062490 AGAGAACTGGCTAGAAGGGTTA 57.938 45.455 3.17 0.00 0.00 2.85
106 108 2.502130 AGAACTGGCTAGAAGGGTTAGC 59.498 50.000 3.17 0.00 42.16 3.09
133 135 2.225650 ACTAAGGGAGAAGCCAAGGAGA 60.226 50.000 0.00 0.00 38.95 3.71
147 149 4.835615 GCCAAGGAGAGGAGTTCTATATGA 59.164 45.833 0.00 0.00 35.87 2.15
163 165 8.989980 GTTCTATATGAAAGATTAAAGTCCCGG 58.010 37.037 0.00 0.00 36.30 5.73
191 193 6.629182 ACTTCGAGTTTTTATCTAGCGTTC 57.371 37.500 0.00 0.00 0.00 3.95
193 195 3.545078 TCGAGTTTTTATCTAGCGTTCGC 59.455 43.478 9.24 9.24 0.00 4.70
213 215 2.288886 GCCACGACATTCTATACCCTCC 60.289 54.545 0.00 0.00 0.00 4.30
229 231 2.674796 CTCCGGAGAGGTTTTGTAGG 57.325 55.000 28.21 0.00 41.99 3.18
248 250 6.823497 TGTAGGGTAGAAATATGGCAACTAC 58.177 40.000 0.00 0.00 34.55 2.73
250 252 6.515512 AGGGTAGAAATATGGCAACTACAT 57.484 37.500 15.24 0.00 36.26 2.29
270 272 0.249155 ACAACATGCAGCTTGTGTGC 60.249 50.000 14.36 0.00 41.59 4.57
345 348 0.325272 AGCCTCTTTCTTCGGAACCC 59.675 55.000 0.00 0.00 33.18 4.11
357 360 0.179121 CGGAACCCGTCATCGATCAA 60.179 55.000 0.00 0.00 42.73 2.57
407 413 4.858850 AGGAGATGTTTACCATGCATGAA 58.141 39.130 28.31 12.44 32.56 2.57
443 461 2.936498 AGATTTTGTCATACTTCGGGCG 59.064 45.455 0.00 0.00 0.00 6.13
444 462 0.800012 TTTTGTCATACTTCGGGCGC 59.200 50.000 0.00 0.00 0.00 6.53
448 466 0.872021 GTCATACTTCGGGCGCTCTG 60.872 60.000 5.36 1.47 0.00 3.35
450 468 1.756950 ATACTTCGGGCGCTCTGGA 60.757 57.895 5.36 0.00 0.00 3.86
467 486 2.872245 CTGGAGTGCTCGAGAAAAACAA 59.128 45.455 18.75 0.00 37.59 2.83
501 520 7.669722 AGGTATATTTCAGAGTCCTTTTGCAAA 59.330 33.333 8.05 8.05 0.00 3.68
511 530 4.407296 AGTCCTTTTGCAAACCATGGTTTA 59.593 37.500 36.22 22.84 45.32 2.01
518 537 7.484035 TTTGCAAACCATGGTTTAATTACAC 57.516 32.000 36.22 21.09 45.32 2.90
520 539 5.070446 TGCAAACCATGGTTTAATTACACCA 59.930 36.000 36.22 22.49 45.32 4.17
533 552 9.216117 GTTTAATTACACCATACTTGTGAGAGT 57.784 33.333 0.00 0.00 37.18 3.24
553 572 4.151883 AGTTGCAAGTGATTACACCCAAT 58.848 39.130 5.84 0.00 46.99 3.16
556 575 5.172687 TGCAAGTGATTACACCCAATAGA 57.827 39.130 0.00 0.00 46.99 1.98
574 593 7.201732 CCCAATAGAGTTATTTCGAATGCAACT 60.202 37.037 15.40 15.40 32.33 3.16
579 598 0.171007 ATTTCGAATGCAACTGCGGG 59.829 50.000 0.00 0.00 45.83 6.13
602 621 1.108776 GCCATCACATTGGTCAGCAT 58.891 50.000 0.00 0.00 39.11 3.79
618 637 1.000955 AGCATCACCGTCGAGTTTCTT 59.999 47.619 0.00 0.00 0.00 2.52
639 658 0.655733 AAGTTCAACGTGGACGCAAG 59.344 50.000 0.00 0.00 44.43 4.01
646 665 2.432628 GTGGACGCAAGAGTCGGG 60.433 66.667 0.00 0.00 41.81 5.14
647 666 2.915659 TGGACGCAAGAGTCGGGT 60.916 61.111 0.00 0.00 41.81 5.28
654 673 1.816863 GCAAGAGTCGGGTGAGGTGA 61.817 60.000 0.00 0.00 0.00 4.02
694 713 5.455899 GGGTGCTATCTCCAGAGATCATTTT 60.456 44.000 13.34 0.00 44.37 1.82
695 714 6.239714 GGGTGCTATCTCCAGAGATCATTTTA 60.240 42.308 13.34 0.00 44.37 1.52
698 717 7.598493 GTGCTATCTCCAGAGATCATTTTAGTC 59.402 40.741 13.34 3.05 44.37 2.59
763 3234 5.421212 TTGCAAAATTTCAGCCAACATTC 57.579 34.783 0.00 0.00 0.00 2.67
806 3277 6.407475 AACAAAAACAATGCTCAAAGTGTC 57.593 33.333 0.00 0.00 0.00 3.67
810 3281 2.653726 ACAATGCTCAAAGTGTCCACA 58.346 42.857 0.00 0.00 0.00 4.17
812 3283 3.005050 ACAATGCTCAAAGTGTCCACATG 59.995 43.478 0.00 0.00 0.00 3.21
813 3284 0.953727 TGCTCAAAGTGTCCACATGC 59.046 50.000 0.00 0.00 0.00 4.06
814 3285 0.242017 GCTCAAAGTGTCCACATGCC 59.758 55.000 0.00 0.00 0.00 4.40
815 3286 0.883833 CTCAAAGTGTCCACATGCCC 59.116 55.000 0.00 0.00 0.00 5.36
816 3287 0.184692 TCAAAGTGTCCACATGCCCA 59.815 50.000 0.00 0.00 0.00 5.36
817 3288 0.314935 CAAAGTGTCCACATGCCCAC 59.685 55.000 0.00 0.00 0.00 4.61
818 3289 1.172180 AAAGTGTCCACATGCCCACG 61.172 55.000 0.00 0.00 33.14 4.94
893 3796 3.530910 CTTTCACGGTCACGGGCCT 62.531 63.158 0.84 0.00 44.98 5.19
1041 3982 2.613506 CGTCACTTTTCACCGCCCC 61.614 63.158 0.00 0.00 0.00 5.80
1114 4055 4.501285 TCTCCCCTCGCCGTCGAT 62.501 66.667 0.00 0.00 44.56 3.59
1115 4056 3.967335 CTCCCCTCGCCGTCGATC 61.967 72.222 0.00 0.00 44.56 3.69
1118 4059 4.609247 CCCTCGCCGTCGATCGAC 62.609 72.222 33.22 33.22 44.56 4.20
1182 4123 2.439156 GCCTCATGCCGCCTCTTT 60.439 61.111 0.00 0.00 0.00 2.52
1279 4220 4.444838 ACGTAATGCCGCTCCGCA 62.445 61.111 0.00 0.00 44.35 5.69
1305 4247 1.673337 GCCTTACAACCCGGTGACC 60.673 63.158 0.00 0.00 0.00 4.02
1320 4262 1.070289 GTGACCGGGTGTTCTCTTCTT 59.930 52.381 3.30 0.00 0.00 2.52
1321 4263 1.343465 TGACCGGGTGTTCTCTTCTTC 59.657 52.381 3.30 0.00 0.00 2.87
1322 4264 1.619332 GACCGGGTGTTCTCTTCTTCT 59.381 52.381 3.30 0.00 0.00 2.85
1363 4305 4.104417 GCACGCTCTCCTCGACGT 62.104 66.667 0.00 0.00 39.78 4.34
1448 4390 0.325296 AACTACCTCAGCATCCCGGA 60.325 55.000 0.73 0.00 0.00 5.14
1474 4416 1.634973 TCAAGGACATGCCCAAGATGA 59.365 47.619 0.00 0.00 37.37 2.92
1521 4490 3.345808 CGACCACCGTGTGCCTTG 61.346 66.667 0.00 0.00 31.34 3.61
1544 4513 3.874392 ATGGTTACTGATTTTGCTGGC 57.126 42.857 0.00 0.00 0.00 4.85
1622 4591 3.117046 GCAAGTCTATGGCTTCGACTAC 58.883 50.000 7.80 1.52 37.04 2.73
1689 4658 0.391661 TGATCTCGCCAAGAAGCACC 60.392 55.000 0.00 0.00 37.61 5.01
1714 4683 2.158475 TCAATGAGGTTTGGCTGTTCCT 60.158 45.455 0.00 0.00 35.26 3.36
1722 4691 2.430694 GTTTGGCTGTTCCTGGTTCTTT 59.569 45.455 0.00 0.00 35.26 2.52
1729 4698 4.010349 CTGTTCCTGGTTCTTTATGGTCC 58.990 47.826 0.00 0.00 0.00 4.46
1734 4703 5.076873 TCCTGGTTCTTTATGGTCCTTTTG 58.923 41.667 0.00 0.00 0.00 2.44
1742 4711 7.531857 TCTTTATGGTCCTTTTGTTGCATTA 57.468 32.000 0.00 0.00 0.00 1.90
1751 4720 5.695816 TCCTTTTGTTGCATTACTTGATTGC 59.304 36.000 0.00 0.00 35.41 3.56
1756 4725 6.028146 TGTTGCATTACTTGATTGCTGAAT 57.972 33.333 0.00 0.00 35.78 2.57
1769 4738 1.341877 TGCTGAATTGGGGGTATGTGG 60.342 52.381 0.00 0.00 0.00 4.17
1771 4740 1.287739 CTGAATTGGGGGTATGTGGGT 59.712 52.381 0.00 0.00 0.00 4.51
1772 4741 1.006519 TGAATTGGGGGTATGTGGGTG 59.993 52.381 0.00 0.00 0.00 4.61
1777 4746 1.286305 GGGGGTATGTGGGTGGTGAT 61.286 60.000 0.00 0.00 0.00 3.06
1781 4770 2.421529 GGGTATGTGGGTGGTGATTCTC 60.422 54.545 0.00 0.00 0.00 2.87
1787 4776 0.326264 GGGTGGTGATTCTCTGCAGT 59.674 55.000 14.67 0.00 0.00 4.40
1804 4793 3.194062 GCAGTTGAAGTATCCAGAGAGC 58.806 50.000 0.00 0.00 0.00 4.09
2036 5025 2.417097 GTTGCCTTGCGCTGGTTT 59.583 55.556 9.73 0.00 38.78 3.27
2037 5026 1.950630 GTTGCCTTGCGCTGGTTTG 60.951 57.895 9.73 0.00 38.78 2.93
2039 5028 2.050077 GCCTTGCGCTGGTTTGAC 60.050 61.111 9.73 0.00 0.00 3.18
2075 5064 1.906574 TGGACATTGGGTCTAGTGGAC 59.093 52.381 0.00 0.00 46.16 4.02
2096 5085 4.010349 ACCTTTAATGGTGCTGCTAGAAC 58.990 43.478 12.04 0.00 39.17 3.01
2097 5086 4.009675 CCTTTAATGGTGCTGCTAGAACA 58.990 43.478 0.00 0.00 0.00 3.18
2107 5096 6.763135 TGGTGCTGCTAGAACATTAAGAATAG 59.237 38.462 0.00 0.00 0.00 1.73
2131 5120 7.872138 AGGATTCTCCACCACTATTCATTTTA 58.128 34.615 0.00 0.00 39.61 1.52
2316 5305 2.173519 CTTGTTGGGCTGATGGATGTT 58.826 47.619 0.00 0.00 0.00 2.71
2426 5415 9.021807 TGAAGTAGTAAAGCACTATCAGTAGTT 57.978 33.333 0.00 0.00 41.77 2.24
2474 5463 4.963953 GCGTGCACACATGATATACTTTTC 59.036 41.667 18.64 0.00 34.49 2.29
2489 5478 4.307443 ACTTTTCAACTAGCAAAGCACC 57.693 40.909 0.00 0.00 34.36 5.01
2525 5514 5.980116 GTGCACATATCTGGACTAAGTAGTG 59.020 44.000 13.17 0.00 36.50 2.74
2526 5515 4.985409 GCACATATCTGGACTAAGTAGTGC 59.015 45.833 3.23 3.23 43.86 4.40
2676 5668 1.673665 GTGCTCACCTCCCTTGCAG 60.674 63.158 0.00 0.00 34.15 4.41
2797 5789 7.734538 AACTGTTTCTGACAATAAAAACACG 57.265 32.000 0.00 0.00 36.86 4.49
2992 5987 1.134818 TGTAAGCGGTACTGCATCTGG 60.135 52.381 27.85 0.00 37.31 3.86
3288 6392 8.771920 TCGTCTTATGACATTCTTTTATGTGT 57.228 30.769 9.22 0.00 43.06 3.72
3333 6441 7.468494 GCAACTTTAAAACCATTGCCTCATTTT 60.468 33.333 12.01 0.00 39.78 1.82
3521 6630 8.450578 TCTCCATGCATAGTTTACCATTAAAG 57.549 34.615 0.00 0.00 0.00 1.85
3784 6894 7.416326 GGTTGTTCCAAATATGAAGGGTATCAC 60.416 40.741 0.00 0.00 35.97 3.06
3827 6940 5.412594 GCCATTCTTCTCCATTCGCATATTA 59.587 40.000 0.00 0.00 0.00 0.98
4026 7139 7.735326 TTATCCTTAGCAAAGTACTTCTCCT 57.265 36.000 8.95 8.04 0.00 3.69
4256 7370 2.306805 TCTGCACAATCATTCCACTCCT 59.693 45.455 0.00 0.00 0.00 3.69
4257 7371 2.422479 CTGCACAATCATTCCACTCCTG 59.578 50.000 0.00 0.00 0.00 3.86
4263 7377 4.042062 ACAATCATTCCACTCCTGTTCTGA 59.958 41.667 0.00 0.00 0.00 3.27
4699 7821 2.102578 GTTATTGCAGAGGCCACCATT 58.897 47.619 5.01 0.00 40.13 3.16
4705 7827 2.291475 TGCAGAGGCCACCATTGATAAA 60.291 45.455 5.01 0.00 40.13 1.40
4714 7836 4.535781 CCACCATTGATAAACTGATCCCA 58.464 43.478 0.00 0.00 0.00 4.37
4756 7878 3.254060 CTCAATACTGACTTGTGGACGG 58.746 50.000 0.00 0.00 0.00 4.79
4773 7895 2.427453 GACGGTCTCCACATATGACACT 59.573 50.000 10.38 0.00 32.84 3.55
4774 7896 2.166459 ACGGTCTCCACATATGACACTG 59.834 50.000 10.38 5.77 32.84 3.66
5114 8236 2.807967 TCAACAGCATTGCTACTGTCAC 59.192 45.455 11.55 0.00 46.17 3.67
5116 8238 1.270305 ACAGCATTGCTACTGTCACGT 60.270 47.619 11.55 0.00 43.55 4.49
5165 8287 1.888018 CACCATGGAAAGCAGCCTG 59.112 57.895 21.47 0.00 0.00 4.85
5200 8322 0.100325 CGGCAACAGCAACTTGTTCA 59.900 50.000 0.00 0.00 39.17 3.18
5207 8329 4.989279 ACAGCAACTTGTTCATCAACTT 57.011 36.364 0.00 0.00 33.17 2.66
5211 8333 5.232838 CAGCAACTTGTTCATCAACTTTTCC 59.767 40.000 0.00 0.00 33.17 3.13
5238 8360 5.975693 AGCTGGTATCTTATCTCACTAGC 57.024 43.478 1.22 1.22 43.47 3.42
5293 8420 5.088026 ACCTGTCTATAATTAGGAGAGCCC 58.912 45.833 0.00 0.00 34.42 5.19
5295 8422 5.420739 CCTGTCTATAATTAGGAGAGCCCTC 59.579 48.000 8.79 0.00 43.31 4.30
5296 8423 6.220881 TGTCTATAATTAGGAGAGCCCTCT 57.779 41.667 0.00 0.00 43.31 3.69
5298 8425 6.014012 GTCTATAATTAGGAGAGCCCTCTGT 58.986 44.000 1.91 0.00 43.31 3.41
5303 8430 2.675658 AGGAGAGCCCTCTGTCTATC 57.324 55.000 1.91 0.00 43.31 2.08
5413 8541 2.038557 TCTTCAGCCTTTCCTACACCAC 59.961 50.000 0.00 0.00 0.00 4.16
5423 8551 1.299976 CTACACCACCTGGCCCTTC 59.700 63.158 0.00 0.00 39.32 3.46
5449 8578 1.270358 GCGGTAATTGCCCCAAAAACA 60.270 47.619 7.02 0.00 0.00 2.83
5471 8600 9.448438 AAACAAAGATACATCACAGCTGTATAA 57.552 29.630 21.20 8.68 39.34 0.98
5529 8659 0.598065 GTTCACCCATGACCTGTTGC 59.402 55.000 0.00 0.00 33.38 4.17
5540 8670 2.290367 TGACCTGTTGCAATCTTTGTCG 59.710 45.455 0.59 0.00 0.00 4.35
5561 8691 3.580731 GAGCTCTGTACTGAACTGGTTC 58.419 50.000 6.43 6.53 39.91 3.62
5563 8693 2.927014 GCTCTGTACTGAACTGGTTCCG 60.927 54.545 10.44 7.09 38.77 4.30
5567 8697 3.199677 TGTACTGAACTGGTTCCGTTTG 58.800 45.455 13.80 2.50 37.94 2.93
5591 8721 8.463930 TGTTTTTCTCCTGCTTAATATATGGG 57.536 34.615 0.00 0.00 0.00 4.00
5592 8722 7.014230 TGTTTTTCTCCTGCTTAATATATGGGC 59.986 37.037 0.00 0.00 0.00 5.36
5593 8723 5.841267 TTCTCCTGCTTAATATATGGGCA 57.159 39.130 7.12 7.12 0.00 5.36
5594 8724 5.426689 TCTCCTGCTTAATATATGGGCAG 57.573 43.478 19.39 19.39 46.62 4.85
5622 8752 5.481473 AGCTGCCAATTCCTCAAGAAAAATA 59.519 36.000 0.00 0.00 38.21 1.40
5636 8766 8.925161 TCAAGAAAAATATATTTTGAAGGGCG 57.075 30.769 21.23 8.98 39.70 6.13
5649 9138 2.098607 TGAAGGGCGAATAGTCAGTACG 59.901 50.000 0.00 0.00 0.00 3.67
5831 9321 9.712305 GTAGGTATATGCAAGTGTCTATTTCAT 57.288 33.333 0.00 0.00 0.00 2.57
5891 9387 9.688091 GATCCTACATTCTAGTATGATCCTACA 57.312 37.037 15.48 0.00 38.82 2.74
5892 9388 8.865420 TCCTACATTCTAGTATGATCCTACAC 57.135 38.462 15.48 0.00 0.00 2.90
5893 9389 8.445588 TCCTACATTCTAGTATGATCCTACACA 58.554 37.037 15.48 0.00 0.00 3.72
5901 9397 9.508642 TCTAGTATGATCCTACACATTCTAGTG 57.491 37.037 10.32 0.00 41.15 2.74
5929 9480 5.069781 TGTTCCCTTCCAAATTTACACCAAG 59.930 40.000 0.00 0.00 0.00 3.61
5969 9520 9.534565 GCATCAGAACTATGAAGACAACTAATA 57.465 33.333 0.00 0.00 31.76 0.98
6081 9632 5.237561 GGCTTTCTTAGGCTGTAGCTATTTC 59.762 44.000 0.00 0.00 45.60 2.17
6094 9645 9.495572 GCTGTAGCTATTTCTGGAAGTTATAAT 57.504 33.333 0.00 0.00 38.21 1.28
6113 9664 8.624776 GTTATAATAGCTGCCTGAAGTTTCATT 58.375 33.333 0.00 0.00 36.46 2.57
6236 9953 9.832445 ATACAATTTCGTAGTCCATGTTATTCT 57.168 29.630 0.00 0.00 0.00 2.40
6242 9959 7.591421 TCGTAGTCCATGTTATTCTATCCAA 57.409 36.000 0.00 0.00 0.00 3.53
6267 9984 9.941325 AATTCATATTGGTGCTTTGTCAAATTA 57.059 25.926 0.00 0.00 0.00 1.40
6628 10345 2.162408 GCAAAGGTAGCTCAAATTCGCT 59.838 45.455 0.00 2.95 40.15 4.93
6711 10431 6.649973 TCATTTGGGCAGTTACATTTCATTTG 59.350 34.615 0.00 0.00 0.00 2.32
6832 10554 4.371624 TCACTGTCCATTTCTTGTGGAT 57.628 40.909 0.00 0.00 46.68 3.41
6928 10650 5.767816 GGTTATGAAGAAACCAACACAGT 57.232 39.130 0.19 0.00 44.83 3.55
6968 10690 1.407979 CCAGGGAGCAAATCAAGATGC 59.592 52.381 0.00 0.00 42.87 3.91
6981 10703 4.077300 TCAAGATGCGCCTATTCTTGAT 57.923 40.909 25.41 4.78 46.28 2.57
7026 10749 5.978814 AGTGAGTAGGCGATTCTTTTGTAT 58.021 37.500 0.00 0.00 0.00 2.29
7043 10766 9.124807 TCTTTTGTATAATATCGCTGTATGACG 57.875 33.333 0.00 0.00 0.00 4.35
7044 10767 9.124807 CTTTTGTATAATATCGCTGTATGACGA 57.875 33.333 0.00 0.00 43.33 4.20
7045 10768 8.669394 TTTGTATAATATCGCTGTATGACGAG 57.331 34.615 0.00 0.00 42.31 4.18
7046 10769 6.255950 TGTATAATATCGCTGTATGACGAGC 58.744 40.000 0.00 0.00 42.31 5.03
7047 10770 3.924918 AATATCGCTGTATGACGAGCT 57.075 42.857 0.00 0.00 42.31 4.09
7048 10771 3.924918 ATATCGCTGTATGACGAGCTT 57.075 42.857 0.00 0.00 42.31 3.74
7049 10772 2.586258 ATCGCTGTATGACGAGCTTT 57.414 45.000 0.00 0.00 42.31 3.51
7050 10773 3.710326 ATCGCTGTATGACGAGCTTTA 57.290 42.857 0.00 0.00 42.31 1.85
7051 10774 2.793933 TCGCTGTATGACGAGCTTTAC 58.206 47.619 0.00 0.00 33.69 2.01
7052 10775 2.422479 TCGCTGTATGACGAGCTTTACT 59.578 45.455 0.00 0.00 33.69 2.24
7053 10776 2.784380 CGCTGTATGACGAGCTTTACTC 59.216 50.000 0.00 0.00 42.47 2.59
7054 10777 3.487711 CGCTGTATGACGAGCTTTACTCT 60.488 47.826 0.00 0.00 43.85 3.24
7055 10778 4.039032 GCTGTATGACGAGCTTTACTCTC 58.961 47.826 0.00 0.00 43.85 3.20
7056 10779 4.438880 GCTGTATGACGAGCTTTACTCTCA 60.439 45.833 0.00 0.00 43.85 3.27
7057 10780 5.236655 TGTATGACGAGCTTTACTCTCAG 57.763 43.478 0.00 0.00 43.85 3.35
7058 10781 4.700692 TGTATGACGAGCTTTACTCTCAGT 59.299 41.667 0.00 0.00 43.85 3.41
7059 10782 3.560902 TGACGAGCTTTACTCTCAGTG 57.439 47.619 0.00 0.00 43.85 3.66
7060 10783 2.229062 TGACGAGCTTTACTCTCAGTGG 59.771 50.000 0.00 0.00 43.85 4.00
7061 10784 1.067495 ACGAGCTTTACTCTCAGTGGC 60.067 52.381 0.00 0.00 43.85 5.01
7062 10785 1.203523 CGAGCTTTACTCTCAGTGGCT 59.796 52.381 0.00 0.00 43.85 4.75
7063 10786 2.615869 GAGCTTTACTCTCAGTGGCTG 58.384 52.381 0.00 0.00 42.62 4.85
7064 10787 1.082690 GCTTTACTCTCAGTGGCTGC 58.917 55.000 0.00 0.00 0.00 5.25
7065 10788 1.338579 GCTTTACTCTCAGTGGCTGCT 60.339 52.381 0.00 0.00 0.00 4.24
7066 10789 2.615869 CTTTACTCTCAGTGGCTGCTC 58.384 52.381 0.00 0.00 0.00 4.26
7067 10790 0.898320 TTACTCTCAGTGGCTGCTCC 59.102 55.000 0.00 0.00 0.00 4.70
7068 10791 0.251787 TACTCTCAGTGGCTGCTCCA 60.252 55.000 0.00 0.00 44.18 3.86
7084 10807 4.905429 TGCTCCAGCTTGTTTCAACTATA 58.095 39.130 0.00 0.00 42.66 1.31
7270 10993 9.334947 CAGATACTATCTCAATGTTGACCAATT 57.665 33.333 0.00 0.00 37.58 2.32
7271 10994 9.334947 AGATACTATCTCAATGTTGACCAATTG 57.665 33.333 0.00 0.00 33.42 2.32
7274 10997 5.649782 ATCTCAATGTTGACCAATTGACC 57.350 39.130 7.12 0.00 32.90 4.02
7275 10998 4.468713 TCTCAATGTTGACCAATTGACCA 58.531 39.130 7.12 1.14 32.90 4.02
7276 10999 4.892345 TCTCAATGTTGACCAATTGACCAA 59.108 37.500 7.12 7.63 32.90 3.67
7278 11001 5.782047 TCAATGTTGACCAATTGACCAATC 58.218 37.500 7.12 6.30 31.01 2.67
7279 11002 5.539574 TCAATGTTGACCAATTGACCAATCT 59.460 36.000 7.12 0.27 31.01 2.40
7280 11003 4.852134 TGTTGACCAATTGACCAATCTG 57.148 40.909 7.12 0.00 0.00 2.90
7281 11004 3.005684 TGTTGACCAATTGACCAATCTGC 59.994 43.478 7.12 0.17 0.00 4.26
7282 11005 3.159213 TGACCAATTGACCAATCTGCT 57.841 42.857 7.12 0.00 0.00 4.24
7283 11006 3.084039 TGACCAATTGACCAATCTGCTC 58.916 45.455 7.12 0.00 0.00 4.26
7284 11007 3.245016 TGACCAATTGACCAATCTGCTCT 60.245 43.478 7.12 0.00 0.00 4.09
7285 11008 3.350833 ACCAATTGACCAATCTGCTCTC 58.649 45.455 7.12 0.00 0.00 3.20
7294 11017 2.099263 CCAATCTGCTCTCCAATGCAAG 59.901 50.000 0.00 0.00 38.81 4.01
7315 11038 4.202441 AGGCTGTGCTTACCAGATTATTG 58.798 43.478 0.00 0.00 31.38 1.90
7322 11045 6.714810 TGTGCTTACCAGATTATTGTGAACTT 59.285 34.615 0.00 0.00 0.00 2.66
7363 11086 7.855409 TCACGACAGACAAAAATAGAAAACATG 59.145 33.333 0.00 0.00 0.00 3.21
7366 11089 7.855409 CGACAGACAAAAATAGAAAACATGTGA 59.145 33.333 0.00 0.00 0.00 3.58
7379 11102 7.613585 AGAAAACATGTGATGATGGCAATTTA 58.386 30.769 0.00 0.00 0.00 1.40
7389 11112 8.629158 GTGATGATGGCAATTTATACTAAACCA 58.371 33.333 0.00 0.00 0.00 3.67
7390 11113 8.629158 TGATGATGGCAATTTATACTAAACCAC 58.371 33.333 0.00 0.00 0.00 4.16
7392 11115 7.122715 TGATGGCAATTTATACTAAACCACCT 58.877 34.615 0.00 0.00 0.00 4.00
7395 11118 7.832769 TGGCAATTTATACTAAACCACCTTTC 58.167 34.615 0.00 0.00 0.00 2.62
7396 11119 7.672239 TGGCAATTTATACTAAACCACCTTTCT 59.328 33.333 0.00 0.00 0.00 2.52
7397 11120 8.188799 GGCAATTTATACTAAACCACCTTTCTC 58.811 37.037 0.00 0.00 0.00 2.87
7405 11128 7.277174 ACTAAACCACCTTTCTCTTTGATTG 57.723 36.000 0.00 0.00 0.00 2.67
7406 11129 7.060421 ACTAAACCACCTTTCTCTTTGATTGA 58.940 34.615 0.00 0.00 0.00 2.57
7407 11130 6.983906 AAACCACCTTTCTCTTTGATTGAT 57.016 33.333 0.00 0.00 0.00 2.57
7408 11131 6.581171 AACCACCTTTCTCTTTGATTGATC 57.419 37.500 0.00 0.00 0.00 2.92
7417 11140 6.775939 TCTCTTTGATTGATCATATGCGTC 57.224 37.500 0.00 0.00 36.56 5.19
7448 11171 1.630369 TGCCAGTTTCATGAGCCTACT 59.370 47.619 0.00 0.00 0.00 2.57
7449 11172 2.837591 TGCCAGTTTCATGAGCCTACTA 59.162 45.455 0.00 0.00 0.00 1.82
7450 11173 3.198872 GCCAGTTTCATGAGCCTACTAC 58.801 50.000 0.00 0.00 0.00 2.73
7452 11175 4.184629 CCAGTTTCATGAGCCTACTACAC 58.815 47.826 0.00 0.00 0.00 2.90
7453 11176 4.081420 CCAGTTTCATGAGCCTACTACACT 60.081 45.833 0.00 0.00 0.00 3.55
7455 11178 6.183360 CCAGTTTCATGAGCCTACTACACTAT 60.183 42.308 0.00 0.00 0.00 2.12
7456 11179 7.014326 CCAGTTTCATGAGCCTACTACACTATA 59.986 40.741 0.00 0.00 0.00 1.31
7457 11180 8.580720 CAGTTTCATGAGCCTACTACACTATAT 58.419 37.037 0.00 0.00 0.00 0.86
7460 11183 5.123979 TCATGAGCCTACTACACTATATGCG 59.876 44.000 0.00 0.00 0.00 4.73
7461 11184 4.395625 TGAGCCTACTACACTATATGCGT 58.604 43.478 0.00 0.00 0.00 5.24
7463 11186 4.653868 AGCCTACTACACTATATGCGTCT 58.346 43.478 0.00 0.00 0.00 4.18
7464 11187 4.456222 AGCCTACTACACTATATGCGTCTG 59.544 45.833 0.00 0.00 0.00 3.51
7465 11188 4.454847 GCCTACTACACTATATGCGTCTGA 59.545 45.833 0.00 0.00 0.00 3.27
7466 11189 5.048921 GCCTACTACACTATATGCGTCTGAA 60.049 44.000 0.00 0.00 0.00 3.02
7467 11190 6.604012 CCTACTACACTATATGCGTCTGAAG 58.396 44.000 0.00 0.00 0.00 3.02
7468 11191 5.440234 ACTACACTATATGCGTCTGAAGG 57.560 43.478 0.00 0.00 0.00 3.46
7469 11192 4.888239 ACTACACTATATGCGTCTGAAGGT 59.112 41.667 0.00 0.00 0.00 3.50
7542 11320 4.322574 GGGTTCTACTTGTCCTTGTCTACC 60.323 50.000 0.00 0.00 0.00 3.18
7552 11330 1.066573 CCTTGTCTACCACAGGCTGAG 60.067 57.143 23.66 13.97 35.97 3.35
7595 11373 2.158856 TGATCCCAGATAACTGCTGCAG 60.159 50.000 27.02 27.02 42.25 4.41
7605 11383 0.536006 ACTGCTGCAGTTCCAGTTCC 60.536 55.000 28.49 0.00 42.59 3.62
7636 11414 3.307059 GCATGACCTACAAGACCTGAAGT 60.307 47.826 0.00 0.00 0.00 3.01
7647 11425 2.222027 GACCTGAAGTCCCAAACTGTG 58.778 52.381 0.00 0.00 39.84 3.66
7660 11438 4.399303 CCCAAACTGTGTCAATTAGATCCC 59.601 45.833 0.00 0.00 0.00 3.85
7662 11440 5.124457 CCAAACTGTGTCAATTAGATCCCTG 59.876 44.000 0.00 0.00 0.00 4.45
7673 11451 6.603201 TCAATTAGATCCCTGTTTTCATCCAC 59.397 38.462 0.00 0.00 0.00 4.02
7676 11454 3.848975 AGATCCCTGTTTTCATCCACTCT 59.151 43.478 0.00 0.00 0.00 3.24
7702 11481 3.636300 CTGCTACAGCTGGAGTCTAAGAT 59.364 47.826 26.79 0.00 42.66 2.40
7728 11507 4.637483 ATCCGTTCCTAAAATGTGCATG 57.363 40.909 0.00 0.00 0.00 4.06
7734 11513 4.613925 TCCTAAAATGTGCATGGCAAAA 57.386 36.364 0.00 0.00 41.47 2.44
7741 11520 1.546923 TGTGCATGGCAAAATCCTGAG 59.453 47.619 0.00 0.00 41.47 3.35
7747 11526 4.264253 CATGGCAAAATCCTGAGTACAGA 58.736 43.478 0.00 0.00 46.03 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 6.002082 CACCCTAACTAAGCTTTACCACTTT 58.998 40.000 3.20 0.00 0.00 2.66
19 20 2.313945 AGCCCACTCTACACCCTAACTA 59.686 50.000 0.00 0.00 0.00 2.24
49 51 2.478872 TGGGAGGTCTTCCTATGAGG 57.521 55.000 0.36 0.00 45.24 3.86
71 73 5.500234 AGCCAGTTCTCTTTGCATATGTAA 58.500 37.500 1.68 1.68 0.00 2.41
78 80 3.557898 CCTTCTAGCCAGTTCTCTTTGCA 60.558 47.826 0.00 0.00 0.00 4.08
82 84 2.909217 ACCCTTCTAGCCAGTTCTCTT 58.091 47.619 0.00 0.00 0.00 2.85
104 106 2.695585 CTTCTCCCTTAGTATGGGGCT 58.304 52.381 18.70 0.00 44.67 5.19
106 108 1.700186 GGCTTCTCCCTTAGTATGGGG 59.300 57.143 18.70 10.93 44.67 4.96
119 121 1.567357 ACTCCTCTCCTTGGCTTCTC 58.433 55.000 0.00 0.00 0.00 2.87
147 149 2.773993 TCGCCGGGACTTTAATCTTT 57.226 45.000 2.18 0.00 0.00 2.52
163 165 5.952634 GCTAGATAAAAACTCGAAGTTTCGC 59.047 40.000 9.28 4.67 46.78 4.70
191 193 1.340248 AGGGTATAGAATGTCGTGGCG 59.660 52.381 0.00 0.00 0.00 5.69
193 195 2.030185 CGGAGGGTATAGAATGTCGTGG 60.030 54.545 0.00 0.00 0.00 4.94
213 215 3.094572 TCTACCCTACAAAACCTCTCCG 58.905 50.000 0.00 0.00 0.00 4.63
226 228 7.626999 ATGTAGTTGCCATATTTCTACCCTA 57.373 36.000 0.00 0.00 32.64 3.53
229 231 8.557029 GTTGTATGTAGTTGCCATATTTCTACC 58.443 37.037 0.00 0.00 32.64 3.18
248 250 3.239254 CACACAAGCTGCATGTTGTATG 58.761 45.455 7.91 8.81 35.10 2.39
250 252 1.001487 GCACACAAGCTGCATGTTGTA 60.001 47.619 7.91 0.00 35.10 2.41
270 272 1.148157 CCTCCAAGTATCGTGCGCTG 61.148 60.000 9.73 0.40 0.00 5.18
271 273 1.141881 CCTCCAAGTATCGTGCGCT 59.858 57.895 9.73 0.00 0.00 5.92
345 348 7.695201 TGTACTAAACTTAGTTGATCGATGACG 59.305 37.037 0.54 0.00 40.96 4.35
357 360 8.468399 GCAGTATCCTCTTGTACTAAACTTAGT 58.532 37.037 7.27 7.27 45.39 2.24
380 383 2.672961 TGGTAAACATCTCCTCGCAG 57.327 50.000 0.00 0.00 0.00 5.18
386 389 4.641989 ACTTCATGCATGGTAAACATCTCC 59.358 41.667 25.97 0.00 37.84 3.71
418 424 5.815740 GCCCGAAGTATGACAAAATCTTCTA 59.184 40.000 0.00 0.00 34.31 2.10
426 432 0.036765 AGCGCCCGAAGTATGACAAA 60.037 50.000 2.29 0.00 0.00 2.83
443 461 0.244994 TTTCTCGAGCACTCCAGAGC 59.755 55.000 7.81 0.00 28.98 4.09
444 462 2.732412 TTTTCTCGAGCACTCCAGAG 57.268 50.000 7.81 0.00 28.98 3.35
448 466 4.451096 TGTATTGTTTTTCTCGAGCACTCC 59.549 41.667 7.81 0.00 0.00 3.85
450 468 5.700832 TCATGTATTGTTTTTCTCGAGCACT 59.299 36.000 7.81 0.00 0.00 4.40
467 486 9.386122 AGGACTCTGAAATATACCTTCATGTAT 57.614 33.333 0.00 0.00 35.64 2.29
511 530 6.149474 GCAACTCTCACAAGTATGGTGTAATT 59.851 38.462 0.00 0.00 0.00 1.40
518 537 4.675190 CTTGCAACTCTCACAAGTATGG 57.325 45.455 0.00 0.00 36.80 2.74
533 552 5.565509 TCTATTGGGTGTAATCACTTGCAA 58.434 37.500 0.00 0.00 43.41 4.08
553 572 5.220397 CGCAGTTGCATTCGAAATAACTCTA 60.220 40.000 17.02 0.00 42.21 2.43
556 575 3.426159 CCGCAGTTGCATTCGAAATAACT 60.426 43.478 15.16 15.16 42.21 2.24
579 598 2.755469 ACCAATGTGATGGCCGGC 60.755 61.111 21.18 21.18 44.75 6.13
583 602 1.066605 GATGCTGACCAATGTGATGGC 59.933 52.381 0.00 0.00 44.75 4.40
602 621 2.100252 ACTTGAAGAAACTCGACGGTGA 59.900 45.455 0.00 0.00 0.00 4.02
618 637 0.460459 TGCGTCCACGTTGAACTTGA 60.460 50.000 3.15 0.00 42.22 3.02
639 658 2.032620 ACATATCACCTCACCCGACTC 58.967 52.381 0.00 0.00 0.00 3.36
646 665 3.609853 TGCTCCAAACATATCACCTCAC 58.390 45.455 0.00 0.00 0.00 3.51
647 666 3.264193 ACTGCTCCAAACATATCACCTCA 59.736 43.478 0.00 0.00 0.00 3.86
654 673 2.726821 CACCCACTGCTCCAAACATAT 58.273 47.619 0.00 0.00 0.00 1.78
695 714 5.940192 TTGATGCACTCAAAAATACGACT 57.060 34.783 8.52 0.00 40.92 4.18
780 3251 7.647228 ACACTTTGAGCATTGTTTTTGTTTTT 58.353 26.923 0.00 0.00 0.00 1.94
781 3252 7.200778 ACACTTTGAGCATTGTTTTTGTTTT 57.799 28.000 0.00 0.00 0.00 2.43
782 3253 6.128309 GGACACTTTGAGCATTGTTTTTGTTT 60.128 34.615 0.00 0.00 0.00 2.83
783 3254 5.351189 GGACACTTTGAGCATTGTTTTTGTT 59.649 36.000 0.00 0.00 0.00 2.83
784 3255 4.869861 GGACACTTTGAGCATTGTTTTTGT 59.130 37.500 0.00 0.00 0.00 2.83
785 3256 4.869297 TGGACACTTTGAGCATTGTTTTTG 59.131 37.500 0.00 0.00 0.00 2.44
893 3796 1.440938 CCACACTTTCCGACGCCAAA 61.441 55.000 0.00 0.00 0.00 3.28
1041 3982 1.539157 GAGAAGGCTGGTTTTCCTGG 58.461 55.000 0.00 0.00 41.38 4.45
1279 4220 1.580994 GGGTTGTAAGGCCCCATCCT 61.581 60.000 0.00 0.00 38.99 3.24
1289 4231 4.272100 CGGTCACCGGGTTGTAAG 57.728 61.111 8.94 0.00 44.15 2.34
1305 4247 3.113260 ACAAGAAGAAGAGAACACCCG 57.887 47.619 0.00 0.00 0.00 5.28
1320 4262 1.257743 CTCGGAGACCTGGAACAAGA 58.742 55.000 0.00 0.00 38.70 3.02
1321 4263 0.247736 CCTCGGAGACCTGGAACAAG 59.752 60.000 6.58 0.00 38.70 3.16
1322 4264 1.827399 GCCTCGGAGACCTGGAACAA 61.827 60.000 6.58 0.00 38.70 2.83
1448 4390 1.750399 GGCATGTCCTTGATGGCGT 60.750 57.895 0.00 0.00 36.74 5.68
1521 4490 4.627035 GCCAGCAAAATCAGTAACCATTTC 59.373 41.667 0.00 0.00 0.00 2.17
1558 4527 5.076182 TCTTGTTCACATAAATGCCTGGAA 58.924 37.500 0.00 0.00 0.00 3.53
1689 4658 1.542915 CAGCCAAACCTCATTGACCAG 59.457 52.381 0.00 0.00 31.84 4.00
1714 4683 5.452636 GCAACAAAAGGACCATAAAGAACCA 60.453 40.000 0.00 0.00 0.00 3.67
1722 4691 6.491745 TCAAGTAATGCAACAAAAGGACCATA 59.508 34.615 0.00 0.00 0.00 2.74
1729 4698 6.421501 TCAGCAATCAAGTAATGCAACAAAAG 59.578 34.615 0.00 0.00 42.45 2.27
1734 4703 6.183360 CCAATTCAGCAATCAAGTAATGCAAC 60.183 38.462 0.00 0.00 42.45 4.17
1742 4711 2.181975 CCCCCAATTCAGCAATCAAGT 58.818 47.619 0.00 0.00 0.00 3.16
1751 4720 1.287739 ACCCACATACCCCCAATTCAG 59.712 52.381 0.00 0.00 0.00 3.02
1756 4725 1.466386 ACCACCCACATACCCCCAA 60.466 57.895 0.00 0.00 0.00 4.12
1769 4738 1.808945 CAACTGCAGAGAATCACCACC 59.191 52.381 23.35 0.00 37.82 4.61
1771 4740 3.181451 ACTTCAACTGCAGAGAATCACCA 60.181 43.478 23.35 0.98 37.82 4.17
1772 4741 3.406764 ACTTCAACTGCAGAGAATCACC 58.593 45.455 23.35 0.00 37.82 4.02
1777 4746 4.528206 TCTGGATACTTCAACTGCAGAGAA 59.472 41.667 23.35 21.07 37.61 2.87
1781 4770 4.431809 CTCTCTGGATACTTCAACTGCAG 58.568 47.826 13.48 13.48 37.61 4.41
1787 4776 3.102972 AGCAGCTCTCTGGATACTTCAA 58.897 45.455 0.00 0.00 40.65 2.69
1804 4793 1.135774 TCGTAGTCGTACTGCAAGCAG 60.136 52.381 19.74 19.74 42.48 4.24
2000 4989 4.099881 GCAACCAATCACATATGGAATGGT 59.900 41.667 19.96 19.96 39.12 3.55
2036 5025 4.036734 GTCCAAGCTTGAATTCAACAGTCA 59.963 41.667 28.05 0.00 0.00 3.41
2037 5026 4.036734 TGTCCAAGCTTGAATTCAACAGTC 59.963 41.667 28.05 6.01 0.00 3.51
2039 5028 4.572985 TGTCCAAGCTTGAATTCAACAG 57.427 40.909 28.05 9.62 0.00 3.16
2075 5064 4.009675 TGTTCTAGCAGCACCATTAAAGG 58.990 43.478 0.00 0.00 0.00 3.11
2131 5120 7.715657 TGTCTGCATTTAACTTCAAAATCAGT 58.284 30.769 0.00 0.00 31.16 3.41
2316 5305 7.932335 TCAAAATTACCTCGCTAAAACAGAAA 58.068 30.769 0.00 0.00 0.00 2.52
2426 5415 7.544566 GCTACTTAACTCAAGCTATGTGTAACA 59.455 37.037 0.00 0.00 45.19 2.41
2474 5463 2.816087 AGTGATGGTGCTTTGCTAGTTG 59.184 45.455 0.00 0.00 0.00 3.16
2503 5492 4.985409 GCACTACTTAGTCCAGATATGTGC 59.015 45.833 0.00 0.00 39.79 4.57
2525 5514 0.657840 GGGAGATATTGTGTGTGCGC 59.342 55.000 0.00 0.00 0.00 6.09
2526 5515 2.022764 TGGGAGATATTGTGTGTGCG 57.977 50.000 0.00 0.00 0.00 5.34
2605 5594 7.390440 ACGAGAATTATCAGACACATCCAAAAA 59.610 33.333 0.35 0.00 0.00 1.94
2676 5668 6.105333 GGCAGATCACTGTGGAATATATCTC 58.895 44.000 8.11 2.97 45.04 2.75
2797 5789 2.501492 AGGCATGCCTGAAATGAGC 58.499 52.632 38.23 6.81 46.22 4.26
3304 6408 4.756135 AGGCAATGGTTTTAAAGTTGCATG 59.244 37.500 20.83 0.00 45.07 4.06
3784 6894 3.256383 TGGCCAGAGAAACAAATCACATG 59.744 43.478 0.00 0.00 0.00 3.21
3827 6940 4.998051 ACCAATGGACAGGTAAAGTTGAT 58.002 39.130 6.16 0.00 36.07 2.57
3961 7074 5.794894 AGTAGTGTAGAAATGTTCCACAGG 58.205 41.667 0.00 0.00 32.09 4.00
4124 7237 8.549338 TGAGATTCTACTATGGACTACATACG 57.451 38.462 0.00 0.00 41.03 3.06
4173 7287 7.339976 AGACCTACTCACTCTGTTCCTAAATAC 59.660 40.741 0.00 0.00 0.00 1.89
4256 7370 9.807921 AGGAAACTTAATTAGGAATTCAGAACA 57.192 29.630 7.93 0.00 37.44 3.18
4263 7377 9.355916 GATAGCCAGGAAACTTAATTAGGAATT 57.644 33.333 0.98 0.00 40.21 2.17
4676 7798 1.745653 GGTGGCCTCTGCAATAACTTC 59.254 52.381 3.32 0.00 40.13 3.01
4699 7821 6.065976 AGTGTGAATGGGATCAGTTTATCA 57.934 37.500 0.00 0.00 0.00 2.15
4705 7827 4.041567 TGTGTTAGTGTGAATGGGATCAGT 59.958 41.667 0.00 0.00 0.00 3.41
4714 7836 8.445275 TTGAGTAAACATGTGTTAGTGTGAAT 57.555 30.769 0.00 0.00 37.25 2.57
4756 7878 4.727507 ACTCAGTGTCATATGTGGAGAC 57.272 45.455 1.90 0.00 0.00 3.36
4887 8009 4.619863 GCACCTACCTCAAGTTCACGAATA 60.620 45.833 0.00 0.00 0.00 1.75
4983 8105 3.135994 TCCTGAAGTCAAGCCGTAAAAC 58.864 45.455 0.00 0.00 0.00 2.43
5081 8203 4.739046 ATGCTGTTGAAAGAGAAACTCG 57.261 40.909 0.00 0.00 35.36 4.18
5114 8236 1.134818 TGGGCTAGACTAACATGCACG 60.135 52.381 0.00 0.00 0.00 5.34
5116 8238 3.931907 AATGGGCTAGACTAACATGCA 57.068 42.857 0.00 0.00 0.00 3.96
5142 8264 1.477700 GCTGCTTTCCATGGTGCATAA 59.522 47.619 22.53 4.78 34.79 1.90
5143 8265 1.105457 GCTGCTTTCCATGGTGCATA 58.895 50.000 22.53 8.03 34.79 3.14
5200 8322 8.718656 AGATACCAGCTAATAGGAAAAGTTGAT 58.281 33.333 0.00 0.00 0.00 2.57
5207 8329 9.601810 TGAGATAAGATACCAGCTAATAGGAAA 57.398 33.333 0.00 0.00 0.00 3.13
5293 8420 5.543507 ACAATAGCCCTTGATAGACAGAG 57.456 43.478 3.07 0.00 0.00 3.35
5294 8421 7.523873 CGATTACAATAGCCCTTGATAGACAGA 60.524 40.741 3.07 0.00 0.00 3.41
5295 8422 6.587990 CGATTACAATAGCCCTTGATAGACAG 59.412 42.308 3.07 0.00 0.00 3.51
5296 8423 6.041637 ACGATTACAATAGCCCTTGATAGACA 59.958 38.462 3.07 0.00 0.00 3.41
5298 8425 6.665992 ACGATTACAATAGCCCTTGATAGA 57.334 37.500 3.07 0.00 0.00 1.98
5303 8430 3.243068 GCCAACGATTACAATAGCCCTTG 60.243 47.826 0.00 0.00 0.00 3.61
5413 8541 2.761213 GCATTGGGAAGGGCCAGG 60.761 66.667 6.18 0.00 38.95 4.45
5423 8551 1.441311 GGGCAATTACCGCATTGGG 59.559 57.895 0.00 0.00 44.64 4.12
5471 8600 6.248433 TGGAGAATGGAAAAGAGCAAACTAT 58.752 36.000 0.00 0.00 0.00 2.12
5475 8604 3.828451 CCTGGAGAATGGAAAAGAGCAAA 59.172 43.478 0.00 0.00 0.00 3.68
5529 8659 4.325741 CAGTACAGAGCTCGACAAAGATTG 59.674 45.833 8.37 0.00 0.00 2.67
5540 8670 3.580731 GAACCAGTTCAGTACAGAGCTC 58.419 50.000 5.27 5.27 39.31 4.09
5561 8691 3.436700 AAGCAGGAGAAAAACAAACGG 57.563 42.857 0.00 0.00 0.00 4.44
5567 8697 7.014230 TGCCCATATATTAAGCAGGAGAAAAAC 59.986 37.037 0.00 0.00 0.00 2.43
5593 8723 3.446570 GGAATTGGCAGCTGCGCT 61.447 61.111 31.19 15.92 43.26 5.92
5594 8724 3.407046 GAGGAATTGGCAGCTGCGC 62.407 63.158 31.19 23.57 43.26 6.09
5622 8752 6.357367 ACTGACTATTCGCCCTTCAAAATAT 58.643 36.000 0.00 0.00 0.00 1.28
5636 8766 4.038162 AGCCAGGAATCGTACTGACTATTC 59.962 45.833 0.00 0.00 37.14 1.75
5781 9271 7.820648 ACTATTTTGCAGACCAGATAACAAAG 58.179 34.615 0.00 0.00 0.00 2.77
5847 9337 9.480861 TGTAGGATCATACTAGGATCTAATTGG 57.519 37.037 17.65 0.00 40.74 3.16
5891 9387 2.639839 AGGGAACAGCACACTAGAATGT 59.360 45.455 0.00 0.00 0.00 2.71
5892 9388 3.340814 AGGGAACAGCACACTAGAATG 57.659 47.619 0.00 0.00 0.00 2.67
5893 9389 3.307762 GGAAGGGAACAGCACACTAGAAT 60.308 47.826 0.00 0.00 0.00 2.40
5895 9391 1.623811 GGAAGGGAACAGCACACTAGA 59.376 52.381 0.00 0.00 0.00 2.43
5896 9392 1.347707 TGGAAGGGAACAGCACACTAG 59.652 52.381 0.00 0.00 0.00 2.57
5898 9394 0.550914 TTGGAAGGGAACAGCACACT 59.449 50.000 0.00 0.00 0.00 3.55
5899 9395 1.398692 TTTGGAAGGGAACAGCACAC 58.601 50.000 0.00 0.00 0.00 3.82
5900 9396 2.380064 ATTTGGAAGGGAACAGCACA 57.620 45.000 0.00 0.00 0.00 4.57
5901 9397 3.751479 AAATTTGGAAGGGAACAGCAC 57.249 42.857 0.00 0.00 0.00 4.40
5902 9398 4.038642 GTGTAAATTTGGAAGGGAACAGCA 59.961 41.667 0.00 0.00 0.00 4.41
5903 9399 4.556233 GTGTAAATTTGGAAGGGAACAGC 58.444 43.478 0.00 0.00 0.00 4.40
5904 9400 4.586841 TGGTGTAAATTTGGAAGGGAACAG 59.413 41.667 0.00 0.00 0.00 3.16
6036 9587 9.536510 AAAGCCACCTAAACATTTACCTTATTA 57.463 29.630 0.00 0.00 0.00 0.98
6038 9589 7.893833 AGAAAGCCACCTAAACATTTACCTTAT 59.106 33.333 0.00 0.00 0.00 1.73
6041 9592 5.641155 AGAAAGCCACCTAAACATTTACCT 58.359 37.500 0.00 0.00 0.00 3.08
6056 9607 1.909302 AGCTACAGCCTAAGAAAGCCA 59.091 47.619 0.00 0.00 43.38 4.75
6075 9626 8.940952 GGCAGCTATTATAACTTCCAGAAATAG 58.059 37.037 0.00 0.00 32.57 1.73
6081 9632 5.858381 TCAGGCAGCTATTATAACTTCCAG 58.142 41.667 0.00 0.00 0.00 3.86
6094 9645 3.507233 CCAAATGAAACTTCAGGCAGCTA 59.493 43.478 0.00 0.00 41.08 3.32
6242 9959 9.369904 GTAATTTGACAAAGCACCAATATGAAT 57.630 29.630 6.77 0.00 0.00 2.57
6267 9984 5.815581 TGCAGTGTAGGATAAATTTCAGGT 58.184 37.500 0.00 0.00 0.00 4.00
6324 10041 2.387757 ACCACAGTTGCATGAACCTTT 58.612 42.857 0.00 0.00 34.80 3.11
6682 10399 2.875296 TGTAACTGCCCAAATGAAGCT 58.125 42.857 0.00 0.00 0.00 3.74
6687 10404 6.427547 ACAAATGAAATGTAACTGCCCAAATG 59.572 34.615 0.00 0.00 0.00 2.32
6832 10554 2.167693 GTGTAGTGCACTACCATGGCTA 59.832 50.000 40.33 24.77 46.22 3.93
6928 10650 3.011144 TGGCCTATTCAGTTGGATCCAAA 59.989 43.478 28.64 13.85 37.70 3.28
6968 10690 5.041287 TCTTACGTCAATCAAGAATAGGCG 58.959 41.667 0.00 0.00 0.00 5.52
6981 10703 5.010719 ACTTGGAGACTGATTCTTACGTCAA 59.989 40.000 0.00 0.00 33.22 3.18
7026 10749 5.372547 AAGCTCGTCATACAGCGATATTA 57.627 39.130 0.00 0.00 40.84 0.98
7043 10766 2.615869 CAGCCACTGAGAGTAAAGCTC 58.384 52.381 0.00 0.00 44.45 4.09
7044 10767 1.338579 GCAGCCACTGAGAGTAAAGCT 60.339 52.381 0.00 0.00 32.44 3.74
7045 10768 1.082690 GCAGCCACTGAGAGTAAAGC 58.917 55.000 0.00 0.00 32.44 3.51
7046 10769 2.615869 GAGCAGCCACTGAGAGTAAAG 58.384 52.381 0.00 0.00 32.44 1.85
7047 10770 1.276421 GGAGCAGCCACTGAGAGTAAA 59.724 52.381 0.00 0.00 36.34 2.01
7048 10771 0.898320 GGAGCAGCCACTGAGAGTAA 59.102 55.000 0.00 0.00 36.34 2.24
7049 10772 0.251787 TGGAGCAGCCACTGAGAGTA 60.252 55.000 0.00 0.00 43.33 2.59
7050 10773 1.534959 TGGAGCAGCCACTGAGAGT 60.535 57.895 0.00 0.00 43.33 3.24
7051 10774 1.218585 CTGGAGCAGCCACTGAGAG 59.781 63.158 0.00 0.00 43.33 3.20
7052 10775 3.385469 CTGGAGCAGCCACTGAGA 58.615 61.111 0.00 0.00 43.33 3.27
7061 10784 1.952296 AGTTGAAACAAGCTGGAGCAG 59.048 47.619 0.00 0.00 45.16 4.24
7062 10785 2.057137 AGTTGAAACAAGCTGGAGCA 57.943 45.000 0.00 0.00 45.16 4.26
7063 10786 5.355350 ACATATAGTTGAAACAAGCTGGAGC 59.645 40.000 0.00 0.00 42.49 4.70
7064 10787 6.372659 ACACATATAGTTGAAACAAGCTGGAG 59.627 38.462 0.00 0.00 0.00 3.86
7065 10788 6.237901 ACACATATAGTTGAAACAAGCTGGA 58.762 36.000 0.00 0.00 0.00 3.86
7066 10789 6.372659 AGACACATATAGTTGAAACAAGCTGG 59.627 38.462 0.00 0.00 0.00 4.85
7067 10790 7.369803 AGACACATATAGTTGAAACAAGCTG 57.630 36.000 0.00 0.00 0.00 4.24
7068 10791 7.880195 AGAAGACACATATAGTTGAAACAAGCT 59.120 33.333 0.00 0.00 0.00 3.74
7069 10792 8.034058 AGAAGACACATATAGTTGAAACAAGC 57.966 34.615 0.00 0.00 0.00 4.01
7084 10807 6.058183 GCCTGGATGTATTTAGAAGACACAT 58.942 40.000 0.00 0.00 32.70 3.21
7245 10968 9.334947 CAATTGGTCAACATTGAGATAGTATCT 57.665 33.333 12.62 12.62 43.70 1.98
7248 10971 7.552687 GGTCAATTGGTCAACATTGAGATAGTA 59.447 37.037 5.42 0.00 37.98 1.82
7265 10988 2.686915 GGAGAGCAGATTGGTCAATTGG 59.313 50.000 5.42 0.00 46.52 3.16
7270 10993 2.942752 GCATTGGAGAGCAGATTGGTCA 60.943 50.000 10.46 0.00 46.52 4.02
7271 10994 1.674962 GCATTGGAGAGCAGATTGGTC 59.325 52.381 0.22 0.22 44.62 4.02
7274 10997 2.099263 CCTTGCATTGGAGAGCAGATTG 59.901 50.000 0.35 0.00 42.39 2.67
7275 10998 2.376109 CCTTGCATTGGAGAGCAGATT 58.624 47.619 0.35 0.00 42.39 2.40
7276 10999 2.022754 GCCTTGCATTGGAGAGCAGAT 61.023 52.381 10.08 0.00 42.39 2.90
7278 11001 0.680280 AGCCTTGCATTGGAGAGCAG 60.680 55.000 10.08 0.00 42.39 4.24
7279 11002 0.963856 CAGCCTTGCATTGGAGAGCA 60.964 55.000 10.08 0.00 39.32 4.26
7280 11003 0.964358 ACAGCCTTGCATTGGAGAGC 60.964 55.000 10.08 0.47 0.00 4.09
7281 11004 0.809385 CACAGCCTTGCATTGGAGAG 59.191 55.000 10.08 0.00 0.00 3.20
7282 11005 1.246056 GCACAGCCTTGCATTGGAGA 61.246 55.000 10.08 0.00 42.49 3.71
7283 11006 1.214589 GCACAGCCTTGCATTGGAG 59.785 57.895 10.08 4.53 42.49 3.86
7284 11007 0.828762 AAGCACAGCCTTGCATTGGA 60.829 50.000 9.65 0.00 45.62 3.53
7285 11008 0.889994 TAAGCACAGCCTTGCATTGG 59.110 50.000 9.65 2.22 45.62 3.16
7294 11017 3.947834 ACAATAATCTGGTAAGCACAGCC 59.052 43.478 0.00 0.00 35.94 4.85
7315 11038 7.321271 CGTGACATTTCATTCTTACAAGTTCAC 59.679 37.037 0.00 0.00 33.11 3.18
7322 11045 6.145534 GTCTGTCGTGACATTTCATTCTTACA 59.854 38.462 2.72 0.00 41.01 2.41
7334 11057 7.490962 TTTCTATTTTTGTCTGTCGTGACAT 57.509 32.000 2.72 0.00 45.03 3.06
7363 11086 8.629158 TGGTTTAGTATAAATTGCCATCATCAC 58.371 33.333 0.00 0.00 0.00 3.06
7366 11089 7.784550 AGGTGGTTTAGTATAAATTGCCATCAT 59.215 33.333 0.00 0.00 0.00 2.45
7379 11102 9.014297 CAATCAAAGAGAAAGGTGGTTTAGTAT 57.986 33.333 0.00 0.00 0.00 2.12
7389 11112 7.255035 CGCATATGATCAATCAAAGAGAAAGGT 60.255 37.037 6.97 0.00 40.69 3.50
7390 11113 7.076362 CGCATATGATCAATCAAAGAGAAAGG 58.924 38.462 6.97 0.00 40.69 3.11
7392 11115 7.496920 AGACGCATATGATCAATCAAAGAGAAA 59.503 33.333 6.97 0.00 40.69 2.52
7395 11118 6.591261 CAGACGCATATGATCAATCAAAGAG 58.409 40.000 6.97 0.00 40.69 2.85
7396 11119 5.049886 GCAGACGCATATGATCAATCAAAGA 60.050 40.000 6.97 0.00 38.06 2.52
7397 11120 5.145059 GCAGACGCATATGATCAATCAAAG 58.855 41.667 6.97 0.00 38.06 2.77
7399 11122 4.128643 TGCAGACGCATATGATCAATCAA 58.871 39.130 6.97 0.00 45.36 2.57
7400 11123 3.731089 TGCAGACGCATATGATCAATCA 58.269 40.909 6.97 0.00 45.36 2.57
7417 11140 2.557924 TGAAACTGGCAATAACCTGCAG 59.442 45.455 6.78 6.78 44.52 4.41
7448 11171 6.204301 GTCTACCTTCAGACGCATATAGTGTA 59.796 42.308 0.00 0.00 42.04 2.90
7449 11172 5.008811 GTCTACCTTCAGACGCATATAGTGT 59.991 44.000 0.00 0.00 45.36 3.55
7450 11173 5.453648 GTCTACCTTCAGACGCATATAGTG 58.546 45.833 0.00 0.00 35.92 2.74
7460 11183 9.099454 CCAAACATAATAAGTCTACCTTCAGAC 57.901 37.037 0.00 0.00 44.44 3.51
7461 11184 9.042450 TCCAAACATAATAAGTCTACCTTCAGA 57.958 33.333 0.00 0.00 34.46 3.27
7463 11186 8.822805 ACTCCAAACATAATAAGTCTACCTTCA 58.177 33.333 0.00 0.00 34.46 3.02
7464 11187 9.668497 AACTCCAAACATAATAAGTCTACCTTC 57.332 33.333 0.00 0.00 34.46 3.46
7465 11188 9.668497 GAACTCCAAACATAATAAGTCTACCTT 57.332 33.333 0.00 0.00 37.17 3.50
7466 11189 8.822805 TGAACTCCAAACATAATAAGTCTACCT 58.177 33.333 0.00 0.00 0.00 3.08
7467 11190 8.880750 GTGAACTCCAAACATAATAAGTCTACC 58.119 37.037 0.00 0.00 0.00 3.18
7468 11191 9.431887 TGTGAACTCCAAACATAATAAGTCTAC 57.568 33.333 0.00 0.00 0.00 2.59
7469 11192 9.653287 CTGTGAACTCCAAACATAATAAGTCTA 57.347 33.333 0.00 0.00 0.00 2.59
7542 11320 0.322277 ACCAAGATGCTCAGCCTGTG 60.322 55.000 0.00 0.00 0.00 3.66
7552 11330 3.191371 AGAAACGATGGAAACCAAGATGC 59.809 43.478 0.00 0.00 36.95 3.91
7636 11414 5.253330 GGATCTAATTGACACAGTTTGGGA 58.747 41.667 0.00 0.00 0.00 4.37
7638 11416 5.124457 CAGGGATCTAATTGACACAGTTTGG 59.876 44.000 0.00 0.00 0.00 3.28
7643 11421 6.430925 TGAAAACAGGGATCTAATTGACACAG 59.569 38.462 0.00 0.00 0.00 3.66
7647 11425 6.603201 TGGATGAAAACAGGGATCTAATTGAC 59.397 38.462 0.00 0.00 0.00 3.18
7660 11438 4.320057 GCAGTTCAGAGTGGATGAAAACAG 60.320 45.833 0.00 0.00 38.34 3.16
7662 11440 3.817647 AGCAGTTCAGAGTGGATGAAAAC 59.182 43.478 0.00 0.00 38.34 2.43
7673 11451 1.547820 TCCAGCTGTAGCAGTTCAGAG 59.452 52.381 13.81 0.00 45.16 3.35
7676 11454 1.273606 GACTCCAGCTGTAGCAGTTCA 59.726 52.381 13.81 0.00 45.16 3.18
7702 11481 5.941058 TGCACATTTTAGGAACGGATAAGAA 59.059 36.000 0.00 0.00 0.00 2.52
7723 11502 1.927487 ACTCAGGATTTTGCCATGCA 58.073 45.000 0.00 0.00 36.47 3.96
7728 11507 2.680339 GCTCTGTACTCAGGATTTTGCC 59.320 50.000 0.00 0.00 41.59 4.52
7734 11513 5.181748 GTTGATTTGCTCTGTACTCAGGAT 58.818 41.667 0.00 0.00 41.59 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.