Multiple sequence alignment - TraesCS5B01G219400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G219400 chr5B 100.000 5555 0 0 1 5555 393671559 393666005 0.000000e+00 10259
1 TraesCS5B01G219400 chr5B 81.955 133 23 1 5125 5257 25263075 25263206 1.640000e-20 111
2 TraesCS5B01G219400 chr5B 93.151 73 4 1 5484 5555 584122576 584122648 7.610000e-19 106
3 TraesCS5B01G219400 chr5D 88.203 4959 279 141 1 4793 335775653 335770835 0.000000e+00 5635
4 TraesCS5B01G219400 chr5D 80.000 375 56 10 4916 5277 469515047 469514679 5.520000e-65 259
5 TraesCS5B01G219400 chr5D 83.333 294 26 7 5276 5547 469514633 469514341 3.320000e-62 250
6 TraesCS5B01G219400 chr5D 82.550 298 31 7 5279 5555 266337249 266336952 5.560000e-60 243
7 TraesCS5B01G219400 chr5D 80.515 272 33 6 4895 5154 391062617 391062880 2.040000e-44 191
8 TraesCS5B01G219400 chr5D 93.056 72 5 0 5484 5555 20212780 20212709 7.610000e-19 106
9 TraesCS5B01G219400 chr5A 82.181 2531 216 118 1 2405 436893304 436890883 0.000000e+00 1958
10 TraesCS5B01G219400 chr5A 86.975 1428 93 57 3241 4643 436889783 436888424 0.000000e+00 1520
11 TraesCS5B01G219400 chr5A 87.630 671 53 11 2457 3107 436890569 436889909 0.000000e+00 752
12 TraesCS5B01G219400 chr5A 90.614 277 13 8 4621 4884 436888410 436888134 6.840000e-94 355
13 TraesCS5B01G219400 chr7D 86.292 445 57 4 4110 4551 598623510 598623067 1.080000e-131 481
14 TraesCS5B01G219400 chr7D 88.406 207 24 0 5276 5482 151782458 151782252 3.320000e-62 250
15 TraesCS5B01G219400 chr7D 80.660 212 41 0 3807 4018 598623804 598623593 1.240000e-36 165
16 TraesCS5B01G219400 chr7D 76.587 252 44 12 3261 3505 598624151 598623908 2.100000e-24 124
17 TraesCS5B01G219400 chr7A 86.067 445 58 4 4110 4551 691150044 691149601 5.040000e-130 475
18 TraesCS5B01G219400 chr7A 80.423 378 57 11 4903 5277 151870086 151870449 7.090000e-69 272
19 TraesCS5B01G219400 chr7A 82.547 212 37 0 3807 4018 691150338 691150127 2.640000e-43 187
20 TraesCS5B01G219400 chr7A 75.277 271 53 10 3243 3505 691150706 691150442 3.520000e-22 117
21 TraesCS5B01G219400 chr7B 87.195 328 40 2 4226 4551 678125402 678125075 6.800000e-99 372
22 TraesCS5B01G219400 chr7B 80.590 407 58 11 4884 5277 633916456 633916058 1.510000e-75 294
23 TraesCS5B01G219400 chr7B 82.326 215 32 4 3807 4018 678125902 678125691 1.230000e-41 182
24 TraesCS5B01G219400 chr7B 89.691 97 10 0 4110 4206 678125608 678125512 2.100000e-24 124
25 TraesCS5B01G219400 chr7B 75.636 275 45 14 3243 3505 678126270 678126006 3.520000e-22 117
26 TraesCS5B01G219400 chr2D 82.338 402 64 6 4883 5277 309085658 309086059 5.330000e-90 342
27 TraesCS5B01G219400 chr2D 78.109 402 81 5 4883 5277 645835904 645835503 1.190000e-61 248
28 TraesCS5B01G219400 chr2D 81.605 299 32 7 5276 5552 309086105 309086402 5.600000e-55 226
29 TraesCS5B01G219400 chr1D 81.907 409 57 10 4880 5277 278099410 278099008 4.150000e-86 329
30 TraesCS5B01G219400 chr1D 87.081 209 27 0 5276 5484 278098962 278098754 2.590000e-58 237
31 TraesCS5B01G219400 chr1D 86.603 209 28 0 5276 5484 8263571 8263779 1.200000e-56 231
32 TraesCS5B01G219400 chr1D 86.893 206 27 0 5279 5484 211939776 211939571 1.200000e-56 231
33 TraesCS5B01G219400 chr3B 80.535 411 56 9 4881 5277 61646748 61647148 1.510000e-75 294
34 TraesCS5B01G219400 chr3B 82.517 143 22 3 4898 5038 34014522 34014663 7.560000e-24 122
35 TraesCS5B01G219400 chr4D 80.612 392 56 8 4881 5259 439749411 439749795 9.110000e-73 285
36 TraesCS5B01G219400 chr4D 87.081 209 23 3 5276 5484 439749859 439750063 3.350000e-57 233
37 TraesCS5B01G219400 chr4D 93.056 72 4 1 5484 5555 413047602 413047672 2.740000e-18 104
38 TraesCS5B01G219400 chrUn 80.098 407 60 10 4884 5277 92633062 92632664 3.280000e-72 283
39 TraesCS5B01G219400 chr2B 80.256 390 65 8 4895 5277 359110056 359109672 3.280000e-72 283
40 TraesCS5B01G219400 chr2B 80.000 155 26 5 5125 5277 522786185 522786034 5.880000e-20 110
41 TraesCS5B01G219400 chr3D 83.221 298 29 12 5278 5555 551395355 551395059 2.570000e-63 254
42 TraesCS5B01G219400 chr6B 91.160 181 15 1 4219 4399 196679377 196679556 1.550000e-60 244
43 TraesCS5B01G219400 chr6B 86.667 210 28 0 5276 5485 408205282 408205073 3.350000e-57 233
44 TraesCS5B01G219400 chr6B 88.722 133 15 0 4407 4539 196679661 196679793 4.450000e-36 163
45 TraesCS5B01G219400 chr6B 88.288 111 13 0 1297 1407 196674997 196675107 3.490000e-27 134
46 TraesCS5B01G219400 chr6A 91.954 174 14 0 4226 4399 133761220 133761393 1.550000e-60 244
47 TraesCS5B01G219400 chr6A 80.505 277 53 1 5276 5552 558928597 558928872 1.570000e-50 211
48 TraesCS5B01G219400 chr6A 88.811 143 16 0 4398 4540 133761469 133761611 5.720000e-40 176
49 TraesCS5B01G219400 chr6A 85.211 142 19 2 1263 1403 133756312 133756452 1.610000e-30 145
50 TraesCS5B01G219400 chr6A 84.483 116 18 0 4109 4224 133761002 133761117 1.260000e-21 115
51 TraesCS5B01G219400 chr3A 82.178 303 31 8 5276 5555 50000821 50001123 7.190000e-59 239
52 TraesCS5B01G219400 chr6D 90.055 181 17 1 4219 4399 108782416 108782595 3.350000e-57 233
53 TraesCS5B01G219400 chr6D 85.535 159 23 0 4398 4556 108782688 108782846 3.440000e-37 167
54 TraesCS5B01G219400 chr6D 89.189 111 12 0 1297 1407 108778229 108778339 7.500000e-29 139
55 TraesCS5B01G219400 chr2A 77.322 366 67 12 4925 5277 686830641 686830279 9.440000e-48 202
56 TraesCS5B01G219400 chr4B 92.857 70 5 0 5486 5555 509312408 509312477 9.850000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G219400 chr5B 393666005 393671559 5554 True 10259.000000 10259 100.000000 1 5555 1 chr5B.!!$R1 5554
1 TraesCS5B01G219400 chr5D 335770835 335775653 4818 True 5635.000000 5635 88.203000 1 4793 1 chr5D.!!$R3 4792
2 TraesCS5B01G219400 chr5D 469514341 469515047 706 True 254.500000 259 81.666500 4916 5547 2 chr5D.!!$R4 631
3 TraesCS5B01G219400 chr5A 436888134 436893304 5170 True 1146.250000 1958 86.850000 1 4884 4 chr5A.!!$R1 4883
4 TraesCS5B01G219400 chr7D 598623067 598624151 1084 True 256.666667 481 81.179667 3261 4551 3 chr7D.!!$R2 1290
5 TraesCS5B01G219400 chr7A 691149601 691150706 1105 True 259.666667 475 81.297000 3243 4551 3 chr7A.!!$R1 1308
6 TraesCS5B01G219400 chr2D 309085658 309086402 744 False 284.000000 342 81.971500 4883 5552 2 chr2D.!!$F1 669
7 TraesCS5B01G219400 chr1D 278098754 278099410 656 True 283.000000 329 84.494000 4880 5484 2 chr1D.!!$R2 604
8 TraesCS5B01G219400 chr4D 439749411 439750063 652 False 259.000000 285 83.846500 4881 5484 2 chr4D.!!$F2 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
560 596 0.111704 CGTTAGCATACGCATGTCGC 60.112 55.0 9.04 0.0 43.23 5.19 F
588 629 0.300491 CATTTATGCGTCCACGTCGG 59.700 55.0 0.36 0.0 42.22 4.79 F
739 804 0.695347 AGCTTAACCCTCTTGCTGCT 59.305 50.0 0.00 0.0 32.32 4.24 F
1467 1595 0.893727 AACAAATCCAGGTCCACCGC 60.894 55.0 0.00 0.0 42.08 5.68 F
2477 2943 0.457851 CTAGCTAGCTGACGCTTGGT 59.542 55.0 27.68 0.0 46.47 3.67 F
3514 4095 0.040157 TTCCACGTACGGACTTCACG 60.040 55.0 21.06 0.0 41.32 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1419 1538 0.040958 GCAGTTTCACTTGTGCCGAG 60.041 55.0 0.00 0.00 0.00 4.63 R
1471 1599 0.100325 AAACACACACCATGCACACG 59.900 50.0 0.00 0.00 0.00 4.49 R
1927 2072 0.109226 CCCTGAGGAAGTCGAACGAC 60.109 60.0 17.79 17.79 39.50 4.34 R
3030 3562 0.243907 AGTACGACGATTGCTGTGCT 59.756 50.0 0.00 0.00 0.00 4.40 R
3633 4225 0.105593 GAATGGCCAGCTCGATCTGA 59.894 55.0 17.59 0.00 36.19 3.27 R
5184 5893 0.037326 TGCGAAAAGAGCACGAGGAT 60.037 50.0 0.00 0.00 40.01 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.497884 AAAGTTCGGCAGCTGGGCT 62.498 57.895 17.12 0.00 40.77 5.19
32 33 3.106986 TTCGGCAGCTGGGCTATCC 62.107 63.158 17.12 5.75 36.40 2.59
169 199 3.387947 CTCGGCCCCGGTAGTTGT 61.388 66.667 6.90 0.00 40.25 3.32
204 234 4.201679 TACCGCGACCGCTCCATG 62.202 66.667 8.23 0.00 39.32 3.66
267 297 1.255667 ACGCCCCTTACGTGATCACT 61.256 55.000 22.95 12.64 43.23 3.41
297 331 0.737019 CCACCGAAAACATGCATGGC 60.737 55.000 29.41 14.77 0.00 4.40
340 374 2.091055 TGGCTTGGCTCCTAGTATCTCT 60.091 50.000 0.00 0.00 0.00 3.10
341 375 2.560981 GGCTTGGCTCCTAGTATCTCTC 59.439 54.545 0.00 0.00 0.00 3.20
342 376 2.227865 GCTTGGCTCCTAGTATCTCTCG 59.772 54.545 0.00 0.00 0.00 4.04
343 377 3.482436 CTTGGCTCCTAGTATCTCTCGT 58.518 50.000 0.00 0.00 0.00 4.18
559 595 3.977684 CGTTAGCATACGCATGTCG 57.022 52.632 7.79 7.79 42.27 4.35
560 596 0.111704 CGTTAGCATACGCATGTCGC 60.112 55.000 9.04 0.00 43.23 5.19
563 599 0.318699 TAGCATACGCATGTCGCTCC 60.319 55.000 9.04 0.00 43.23 4.70
565 601 1.227234 CATACGCATGTCGCTCCCA 60.227 57.895 9.04 0.00 43.23 4.37
567 603 2.954020 ATACGCATGTCGCTCCCACG 62.954 60.000 9.04 0.00 43.23 4.94
576 617 1.934589 TCGCTCCCACGACATTTATG 58.065 50.000 0.00 0.00 37.09 1.90
587 628 0.996462 ACATTTATGCGTCCACGTCG 59.004 50.000 0.36 0.00 42.22 5.12
588 629 0.300491 CATTTATGCGTCCACGTCGG 59.700 55.000 0.36 0.00 42.22 4.79
655 701 1.186200 CGTCTGGTTGGAGAGATGGA 58.814 55.000 0.00 0.00 0.00 3.41
716 781 3.553096 CCGATACTGGTGGCTTAGCTTAG 60.553 52.174 3.59 0.00 0.00 2.18
718 783 1.280457 ACTGGTGGCTTAGCTTAGCT 58.720 50.000 22.83 12.67 43.41 3.32
719 784 1.630878 ACTGGTGGCTTAGCTTAGCTT 59.369 47.619 22.83 0.00 40.44 3.74
720 785 2.838202 ACTGGTGGCTTAGCTTAGCTTA 59.162 45.455 22.83 10.78 40.44 3.09
721 786 3.118592 ACTGGTGGCTTAGCTTAGCTTAG 60.119 47.826 22.83 14.34 40.44 2.18
732 797 4.409718 GCTTAGCTTAGCTTAACCCTCT 57.590 45.455 17.24 0.00 40.44 3.69
733 798 4.771903 GCTTAGCTTAGCTTAACCCTCTT 58.228 43.478 17.24 0.00 40.44 2.85
734 799 4.572795 GCTTAGCTTAGCTTAACCCTCTTG 59.427 45.833 17.24 0.00 40.44 3.02
739 804 0.695347 AGCTTAACCCTCTTGCTGCT 59.305 50.000 0.00 0.00 32.32 4.24
747 812 1.602888 CTCTTGCTGCTGCCCAGTT 60.603 57.895 13.47 0.00 43.71 3.16
753 818 2.913578 TGCTGCCCAGTTGCCTTG 60.914 61.111 0.00 0.00 0.00 3.61
772 837 0.938008 GCCCGATCGATCAAGTTTCC 59.062 55.000 24.40 2.41 0.00 3.13
786 854 9.916397 CGATCAAGTTTCCTTGTATATAAACAC 57.084 33.333 2.69 0.00 46.70 3.32
788 856 7.745015 TCAAGTTTCCTTGTATATAAACACGC 58.255 34.615 2.69 0.00 46.70 5.34
789 857 6.340537 AGTTTCCTTGTATATAAACACGCG 57.659 37.500 3.53 3.53 34.92 6.01
790 858 5.292589 AGTTTCCTTGTATATAAACACGCGG 59.707 40.000 12.47 1.27 34.92 6.46
791 859 3.125316 TCCTTGTATATAAACACGCGGC 58.875 45.455 12.47 0.00 0.00 6.53
808 876 4.634133 CCGGACGCGGCGCTTATA 62.634 66.667 30.54 0.00 0.00 0.98
902 978 3.773154 AGCCTCCCTCTCCCTCCC 61.773 72.222 0.00 0.00 0.00 4.30
925 1001 3.442996 CGGCTTCTCGGATCAAAGT 57.557 52.632 0.00 0.00 0.00 2.66
926 1002 1.281899 CGGCTTCTCGGATCAAAGTC 58.718 55.000 0.00 0.00 0.00 3.01
1090 1205 3.495001 TGTGTTTGCGTTGACGATGAATA 59.505 39.130 7.85 0.00 43.02 1.75
1099 1214 4.730042 CGTTGACGATGAATATTTGCTTGG 59.270 41.667 0.00 0.00 43.02 3.61
1106 1221 3.523547 TGAATATTTGCTTGGCATGCAC 58.476 40.909 25.49 14.36 40.40 4.57
1110 1225 6.264970 TGAATATTTGCTTGGCATGCACTATA 59.735 34.615 25.49 22.96 40.40 1.31
1111 1226 6.845758 ATATTTGCTTGGCATGCACTATAT 57.154 33.333 25.49 23.86 40.40 0.86
1112 1227 5.540400 ATTTGCTTGGCATGCACTATATT 57.460 34.783 25.49 6.90 40.40 1.28
1113 1228 6.653526 ATTTGCTTGGCATGCACTATATTA 57.346 33.333 25.49 8.38 40.40 0.98
1114 1229 5.437289 TTGCTTGGCATGCACTATATTAC 57.563 39.130 25.49 0.00 40.40 1.89
1115 1230 3.498018 TGCTTGGCATGCACTATATTACG 59.502 43.478 22.45 0.00 35.31 3.18
1116 1231 3.745975 GCTTGGCATGCACTATATTACGA 59.254 43.478 21.36 0.00 0.00 3.43
1120 1235 6.280855 TGGCATGCACTATATTACGAGTAT 57.719 37.500 21.36 0.00 0.00 2.12
1139 1254 5.135383 AGTATATGTTACTGACGTGGCCTA 58.865 41.667 3.32 0.00 0.00 3.93
1405 1524 1.542187 AAGGAGTGGGACTGGTACGC 61.542 60.000 0.00 0.00 0.00 4.42
1406 1525 2.280552 GGAGTGGGACTGGTACGCA 61.281 63.158 0.00 0.00 0.00 5.24
1421 1540 4.642424 GTACGCAACCAACTTCTTACTC 57.358 45.455 0.00 0.00 0.00 2.59
1422 1541 2.132762 ACGCAACCAACTTCTTACTCG 58.867 47.619 0.00 0.00 0.00 4.18
1424 1543 1.197036 GCAACCAACTTCTTACTCGGC 59.803 52.381 0.00 0.00 0.00 5.54
1425 1544 2.489971 CAACCAACTTCTTACTCGGCA 58.510 47.619 0.00 0.00 0.00 5.69
1427 1546 1.414919 ACCAACTTCTTACTCGGCACA 59.585 47.619 0.00 0.00 0.00 4.57
1428 1547 2.158871 ACCAACTTCTTACTCGGCACAA 60.159 45.455 0.00 0.00 0.00 3.33
1430 1549 3.131396 CAACTTCTTACTCGGCACAAGT 58.869 45.455 0.00 0.00 0.00 3.16
1431 1550 2.755650 ACTTCTTACTCGGCACAAGTG 58.244 47.619 0.00 0.00 0.00 3.16
1432 1551 2.364324 ACTTCTTACTCGGCACAAGTGA 59.636 45.455 4.04 0.00 0.00 3.41
1433 1552 3.181469 ACTTCTTACTCGGCACAAGTGAA 60.181 43.478 4.04 0.00 0.00 3.18
1434 1553 3.462483 TCTTACTCGGCACAAGTGAAA 57.538 42.857 4.04 0.00 0.00 2.69
1459 1587 3.629398 GCATGAGTCCTAACAAATCCAGG 59.371 47.826 0.00 0.00 0.00 4.45
1463 1591 3.256704 AGTCCTAACAAATCCAGGTCCA 58.743 45.455 0.00 0.00 0.00 4.02
1464 1592 3.009143 AGTCCTAACAAATCCAGGTCCAC 59.991 47.826 0.00 0.00 0.00 4.02
1467 1595 0.893727 AACAAATCCAGGTCCACCGC 60.894 55.000 0.00 0.00 42.08 5.68
1469 1597 3.622060 AAATCCAGGTCCACCGCCG 62.622 63.158 0.00 0.00 42.08 6.46
1491 1619 1.468908 CGTGTGCATGGTGTGTGTTTT 60.469 47.619 0.00 0.00 0.00 2.43
1516 1644 3.370953 GGGACAACTTCCTGATACTGCAT 60.371 47.826 0.00 0.00 45.09 3.96
1641 1769 2.348888 CCGAGCCCCTGTTCTACGT 61.349 63.158 0.00 0.00 0.00 3.57
1734 1862 1.736645 CGCCCTTCACAGGTACGTG 60.737 63.158 13.84 13.84 38.79 4.49
1735 1863 1.669440 GCCCTTCACAGGTACGTGA 59.331 57.895 21.70 10.75 44.05 4.35
1927 2072 3.838795 GCCTTCGCGTACGTGCTG 61.839 66.667 23.52 16.86 41.18 4.41
1930 2075 2.764925 CTTCGCGTACGTGCTGTCG 61.765 63.158 23.52 13.61 41.18 4.35
2048 2193 1.831652 AACGTAAGCTGCCTGCCTCT 61.832 55.000 0.00 0.00 44.23 3.69
2075 2221 5.588240 TCTAAACACACATAGGCATAGTCG 58.412 41.667 0.00 0.00 0.00 4.18
2079 2225 2.541346 CACACATAGGCATAGTCGCTTG 59.459 50.000 0.00 0.00 0.00 4.01
2131 2287 1.404035 ACCGAGCACAGTTTGAAAACC 59.596 47.619 2.34 0.00 39.71 3.27
2143 2299 8.143835 CACAGTTTGAAAACCTATCCAAGAAAT 58.856 33.333 2.34 0.00 39.71 2.17
2167 2323 6.026947 ACTAGTGTGTCAGTACCAGATTTC 57.973 41.667 0.00 0.00 0.00 2.17
2185 2341 6.316140 CAGATTTCATTCACGAGGGTAATTCA 59.684 38.462 0.00 0.00 0.00 2.57
2355 2527 0.752009 TAGGTTGCCGATCGAGCTCT 60.752 55.000 18.66 17.03 37.96 4.09
2365 2537 0.801251 ATCGAGCTCTGCTTTGCAAC 59.199 50.000 12.85 0.00 39.88 4.17
2401 2579 3.530910 AACCGCTCCCCTGTTCACG 62.531 63.158 0.00 0.00 0.00 4.35
2463 2929 1.390565 CCGTACAGTACAGGCTAGCT 58.609 55.000 15.72 0.00 0.00 3.32
2477 2943 0.457851 CTAGCTAGCTGACGCTTGGT 59.542 55.000 27.68 0.00 46.47 3.67
2655 3129 1.549170 AGCACCACGGTTTCTAGTAGG 59.451 52.381 0.00 0.00 0.00 3.18
2734 3222 0.579630 CGTCGCAAGTGCAGTGTTAA 59.420 50.000 3.87 0.00 42.21 2.01
2740 3228 2.286833 GCAAGTGCAGTGTTAAACTCGA 59.713 45.455 0.00 0.00 36.83 4.04
2746 3234 2.746269 CAGTGTTAAACTCGAACGGGA 58.254 47.619 0.00 0.00 36.83 5.14
2764 3252 3.367743 CACGCACCTGCTGGCAAT 61.368 61.111 9.95 0.00 39.32 3.56
2803 3291 3.548415 CCGAAGCTTCTGGATCGTACTAC 60.548 52.174 24.29 0.00 33.65 2.73
2820 3336 6.969828 GTACTACACTTACCAGTACGTAGT 57.030 41.667 0.00 13.89 41.88 2.73
2853 3369 1.270094 TGTAGTTGCAACAGCTAGCGT 60.270 47.619 30.11 10.40 28.45 5.07
2925 3446 1.446099 GAGTCCTTGTCGCGCATCA 60.446 57.895 8.75 2.22 0.00 3.07
2930 3451 0.529337 CCTTGTCGCGCATCATCTCT 60.529 55.000 8.75 0.00 0.00 3.10
2977 3498 4.020573 CCATCGGTAATCCTAATACTGGCA 60.021 45.833 0.00 0.00 31.81 4.92
3055 3587 2.355132 CAGCAATCGTCGTACTCTAGGT 59.645 50.000 0.00 0.00 0.00 3.08
3057 3589 4.034858 CAGCAATCGTCGTACTCTAGGTTA 59.965 45.833 0.00 0.00 0.00 2.85
3089 3621 0.470833 ATCGAGCAGCTGGGGACTAT 60.471 55.000 17.12 0.00 0.00 2.12
3096 3628 2.297597 GCAGCTGGGGACTATACTACAG 59.702 54.545 17.12 0.00 0.00 2.74
3097 3629 2.894126 CAGCTGGGGACTATACTACAGG 59.106 54.545 5.57 0.00 0.00 4.00
3099 3631 3.158676 GCTGGGGACTATACTACAGGAG 58.841 54.545 0.00 0.00 0.00 3.69
3101 3633 4.658063 CTGGGGACTATACTACAGGAGAG 58.342 52.174 0.00 0.00 0.00 3.20
3103 3635 4.104420 TGGGGACTATACTACAGGAGAGTC 59.896 50.000 7.57 7.57 33.99 3.36
3104 3636 4.104420 GGGGACTATACTACAGGAGAGTCA 59.896 50.000 16.10 0.00 35.98 3.41
3105 3637 5.310451 GGGACTATACTACAGGAGAGTCAG 58.690 50.000 16.10 0.00 35.98 3.51
3106 3638 4.758165 GGACTATACTACAGGAGAGTCAGC 59.242 50.000 16.10 0.00 35.98 4.26
3109 3641 1.551452 ACTACAGGAGAGTCAGCCAC 58.449 55.000 5.04 0.00 0.00 5.01
3110 3642 1.076350 ACTACAGGAGAGTCAGCCACT 59.924 52.381 5.04 0.00 38.45 4.00
3136 3700 4.976224 ACCAACTGTTGTTTTAGTGACC 57.024 40.909 18.38 0.00 33.52 4.02
3152 3716 2.028020 GTGACCCCACTTAAGTCTCCAG 60.028 54.545 4.77 0.00 40.10 3.86
3158 3722 4.518249 CCCACTTAAGTCTCCAGGAAATC 58.482 47.826 4.77 0.00 0.00 2.17
3159 3723 4.226168 CCCACTTAAGTCTCCAGGAAATCT 59.774 45.833 4.77 0.00 0.00 2.40
3160 3724 5.425539 CCCACTTAAGTCTCCAGGAAATCTA 59.574 44.000 4.77 0.00 0.00 1.98
3162 3726 6.155393 CCACTTAAGTCTCCAGGAAATCTACT 59.845 42.308 4.77 0.00 0.00 2.57
3163 3727 7.038659 CACTTAAGTCTCCAGGAAATCTACTG 58.961 42.308 4.77 0.00 34.54 2.74
3164 3728 6.726764 ACTTAAGTCTCCAGGAAATCTACTGT 59.273 38.462 1.12 0.00 32.90 3.55
3165 3729 7.894364 ACTTAAGTCTCCAGGAAATCTACTGTA 59.106 37.037 1.12 0.00 32.90 2.74
3166 3730 6.532988 AAGTCTCCAGGAAATCTACTGTAC 57.467 41.667 0.00 0.00 32.90 2.90
3167 3731 5.833340 AGTCTCCAGGAAATCTACTGTACT 58.167 41.667 0.00 0.00 32.90 2.73
3168 3732 5.654650 AGTCTCCAGGAAATCTACTGTACTG 59.345 44.000 0.00 0.00 32.90 2.74
3174 3750 7.233962 TCCAGGAAATCTACTGTACTGTTAACA 59.766 37.037 10.89 8.28 32.90 2.41
3200 3776 6.293626 GCATGTATCCGCTCTGAATTTGTTAT 60.294 38.462 0.00 0.00 0.00 1.89
3202 3778 7.015226 TGTATCCGCTCTGAATTTGTTATTG 57.985 36.000 0.00 0.00 0.00 1.90
3203 3779 6.597672 TGTATCCGCTCTGAATTTGTTATTGT 59.402 34.615 0.00 0.00 0.00 2.71
3204 3780 7.766738 TGTATCCGCTCTGAATTTGTTATTGTA 59.233 33.333 0.00 0.00 0.00 2.41
3206 3782 5.353123 TCCGCTCTGAATTTGTTATTGTACC 59.647 40.000 0.00 0.00 0.00 3.34
3207 3783 5.354234 CCGCTCTGAATTTGTTATTGTACCT 59.646 40.000 0.00 0.00 0.00 3.08
3209 3785 6.555315 GCTCTGAATTTGTTATTGTACCTGG 58.445 40.000 0.00 0.00 0.00 4.45
3227 3805 4.792087 GTGGGTGACACGAACCAT 57.208 55.556 5.49 0.00 40.85 3.55
3228 3806 2.244000 GTGGGTGACACGAACCATG 58.756 57.895 5.49 0.00 40.85 3.66
3229 3807 1.072332 TGGGTGACACGAACCATGG 59.928 57.895 11.19 11.19 39.65 3.66
3230 3808 1.373435 GGGTGACACGAACCATGGA 59.627 57.895 21.47 0.00 39.65 3.41
3231 3809 0.953960 GGGTGACACGAACCATGGAC 60.954 60.000 21.47 11.10 39.65 4.02
3368 3949 4.096003 GCTGTGCGGGCCTTCCTA 62.096 66.667 0.84 0.00 0.00 2.94
3369 3950 2.187946 CTGTGCGGGCCTTCCTAG 59.812 66.667 0.84 0.00 0.00 3.02
3506 4087 2.876955 TACGGCTTCCACGTACGG 59.123 61.111 21.06 8.46 44.93 4.02
3510 4091 1.291272 GGCTTCCACGTACGGACTT 59.709 57.895 21.06 0.00 33.75 3.01
3514 4095 0.040157 TTCCACGTACGGACTTCACG 60.040 55.000 21.06 0.00 41.32 4.35
3517 4098 1.081641 ACGTACGGACTTCACGCTG 60.082 57.895 21.06 0.00 39.23 5.18
3519 4100 2.126618 TACGGACTTCACGCTGCG 60.127 61.111 21.91 21.91 34.00 5.18
3525 4108 3.184683 CTTCACGCTGCGCCTCTC 61.185 66.667 23.51 0.00 0.00 3.20
3527 4110 4.724602 TCACGCTGCGCCTCTCAC 62.725 66.667 23.51 0.00 0.00 3.51
3529 4112 4.731612 ACGCTGCGCCTCTCACTG 62.732 66.667 23.51 0.00 0.00 3.66
3535 4118 2.433838 CGCCTCTCACTGCCACTG 60.434 66.667 0.00 0.00 0.00 3.66
3536 4119 2.046507 GCCTCTCACTGCCACTGG 60.047 66.667 0.00 0.00 0.00 4.00
3555 4139 5.010012 CACTGGCTAGGTTCTGAATGTTTTT 59.990 40.000 0.85 0.00 0.00 1.94
3556 4140 5.010012 ACTGGCTAGGTTCTGAATGTTTTTG 59.990 40.000 0.85 0.00 0.00 2.44
3557 4141 4.237724 GGCTAGGTTCTGAATGTTTTTGC 58.762 43.478 0.00 0.00 0.00 3.68
3558 4142 4.021981 GGCTAGGTTCTGAATGTTTTTGCT 60.022 41.667 0.00 0.00 0.00 3.91
3559 4143 5.157067 GCTAGGTTCTGAATGTTTTTGCTC 58.843 41.667 0.00 0.00 0.00 4.26
3560 4144 5.278463 GCTAGGTTCTGAATGTTTTTGCTCA 60.278 40.000 0.00 0.00 0.00 4.26
3562 4146 5.776744 AGGTTCTGAATGTTTTTGCTCATC 58.223 37.500 0.00 0.00 0.00 2.92
3563 4147 4.925646 GGTTCTGAATGTTTTTGCTCATCC 59.074 41.667 0.00 0.00 0.00 3.51
3564 4148 5.509501 GGTTCTGAATGTTTTTGCTCATCCA 60.510 40.000 0.00 0.00 0.00 3.41
3575 4167 1.980765 TGCTCATCCACCTCTTGTCTT 59.019 47.619 0.00 0.00 0.00 3.01
3577 4169 3.181440 TGCTCATCCACCTCTTGTCTTTT 60.181 43.478 0.00 0.00 0.00 2.27
3578 4170 3.823304 GCTCATCCACCTCTTGTCTTTTT 59.177 43.478 0.00 0.00 0.00 1.94
3579 4171 4.083057 GCTCATCCACCTCTTGTCTTTTTC 60.083 45.833 0.00 0.00 0.00 2.29
3580 4172 5.047566 TCATCCACCTCTTGTCTTTTTCA 57.952 39.130 0.00 0.00 0.00 2.69
3582 4174 6.070656 TCATCCACCTCTTGTCTTTTTCATT 58.929 36.000 0.00 0.00 0.00 2.57
3583 4175 5.772825 TCCACCTCTTGTCTTTTTCATTG 57.227 39.130 0.00 0.00 0.00 2.82
3584 4176 5.200483 TCCACCTCTTGTCTTTTTCATTGT 58.800 37.500 0.00 0.00 0.00 2.71
3585 4177 5.656416 TCCACCTCTTGTCTTTTTCATTGTT 59.344 36.000 0.00 0.00 0.00 2.83
3587 4179 6.256321 CCACCTCTTGTCTTTTTCATTGTTTG 59.744 38.462 0.00 0.00 0.00 2.93
3588 4180 5.812127 ACCTCTTGTCTTTTTCATTGTTTGC 59.188 36.000 0.00 0.00 0.00 3.68
3589 4181 5.811613 CCTCTTGTCTTTTTCATTGTTTGCA 59.188 36.000 0.00 0.00 0.00 4.08
3590 4182 6.237915 CCTCTTGTCTTTTTCATTGTTTGCAC 60.238 38.462 0.00 0.00 0.00 4.57
3591 4183 5.288232 TCTTGTCTTTTTCATTGTTTGCACG 59.712 36.000 0.00 0.00 0.00 5.34
3592 4184 4.738124 TGTCTTTTTCATTGTTTGCACGA 58.262 34.783 0.00 0.00 0.00 4.35
3593 4185 4.560819 TGTCTTTTTCATTGTTTGCACGAC 59.439 37.500 0.00 0.00 0.00 4.34
3633 4225 0.744414 CCAAGGACGGCATCAACGAT 60.744 55.000 0.00 0.00 34.93 3.73
3651 4243 0.763652 ATCAGATCGAGCTGGCCATT 59.236 50.000 28.81 7.83 36.55 3.16
3684 4276 0.872388 GAATGGGCGTCAAAGTCGTT 59.128 50.000 0.00 0.00 0.00 3.85
3710 4302 1.155042 GCAGCTCTCAACAAGGTCTG 58.845 55.000 0.00 0.00 0.00 3.51
3711 4303 1.155042 CAGCTCTCAACAAGGTCTGC 58.845 55.000 0.00 0.00 0.00 4.26
3716 4309 2.810852 CTCTCAACAAGGTCTGCTTTCC 59.189 50.000 0.00 0.00 0.00 3.13
3730 4323 3.359033 TGCTTTCCCTTCATTCTGATGG 58.641 45.455 2.83 2.83 40.32 3.51
3765 4360 3.505293 TGCTGCTACATGTAAAATGTGCA 59.495 39.130 7.06 10.53 35.97 4.57
3773 4368 4.980590 CATGTAAAATGTGCATGTACGGT 58.019 39.130 9.48 0.00 43.30 4.83
3775 4370 4.320023 TGTAAAATGTGCATGTACGGTCT 58.680 39.130 9.48 0.00 0.00 3.85
3778 4373 0.744414 ATGTGCATGTACGGTCTGGC 60.744 55.000 9.48 0.00 0.00 4.85
3779 4374 2.106683 GTGCATGTACGGTCTGGCC 61.107 63.158 0.00 0.00 0.00 5.36
3780 4375 2.290287 TGCATGTACGGTCTGGCCT 61.290 57.895 3.32 0.00 34.25 5.19
3781 4376 0.973496 TGCATGTACGGTCTGGCCTA 60.973 55.000 3.32 0.00 34.25 3.93
3782 4377 0.177141 GCATGTACGGTCTGGCCTAA 59.823 55.000 3.32 0.00 34.25 2.69
3783 4378 1.202651 GCATGTACGGTCTGGCCTAAT 60.203 52.381 3.32 0.00 34.25 1.73
3784 4379 2.036733 GCATGTACGGTCTGGCCTAATA 59.963 50.000 3.32 0.00 34.25 0.98
3785 4380 3.493699 GCATGTACGGTCTGGCCTAATAA 60.494 47.826 3.32 0.00 34.25 1.40
3786 4381 4.802918 GCATGTACGGTCTGGCCTAATAAT 60.803 45.833 3.32 0.00 34.25 1.28
3787 4382 5.568023 GCATGTACGGTCTGGCCTAATAATA 60.568 44.000 3.32 0.00 34.25 0.98
3788 4383 6.640518 CATGTACGGTCTGGCCTAATAATAT 58.359 40.000 3.32 0.00 34.25 1.28
3789 4384 7.632028 GCATGTACGGTCTGGCCTAATAATATA 60.632 40.741 3.32 0.00 34.25 0.86
3790 4385 7.779754 TGTACGGTCTGGCCTAATAATATAA 57.220 36.000 3.32 0.00 34.25 0.98
3791 4386 8.370266 TGTACGGTCTGGCCTAATAATATAAT 57.630 34.615 3.32 0.00 34.25 1.28
3792 4387 8.818860 TGTACGGTCTGGCCTAATAATATAATT 58.181 33.333 3.32 0.00 34.25 1.40
3793 4388 9.095065 GTACGGTCTGGCCTAATAATATAATTG 57.905 37.037 3.32 0.00 34.25 2.32
3794 4389 7.913789 ACGGTCTGGCCTAATAATATAATTGA 58.086 34.615 3.32 0.00 34.25 2.57
3795 4390 8.380099 ACGGTCTGGCCTAATAATATAATTGAA 58.620 33.333 3.32 0.00 34.25 2.69
3796 4391 9.396022 CGGTCTGGCCTAATAATATAATTGAAT 57.604 33.333 3.32 0.00 34.25 2.57
3990 4585 2.561956 GGCCATCGCGCTCTACCTA 61.562 63.158 5.56 0.00 35.02 3.08
4060 4691 5.348997 GGATTGATTAGTGTATAAGCGAGCC 59.651 44.000 0.00 0.00 0.00 4.70
4071 4702 2.953466 AAGCGAGCCGTGACTAATTA 57.047 45.000 0.00 0.00 0.00 1.40
4072 4703 2.953466 AGCGAGCCGTGACTAATTAA 57.047 45.000 0.00 0.00 0.00 1.40
4073 4704 2.537401 AGCGAGCCGTGACTAATTAAC 58.463 47.619 0.00 0.00 0.00 2.01
4074 4705 1.254570 GCGAGCCGTGACTAATTAACG 59.745 52.381 1.94 1.94 37.07 3.18
4078 4709 3.773591 CGTGACTAATTAACGGCGC 57.226 52.632 6.90 0.00 33.77 6.53
4079 4710 0.993532 CGTGACTAATTAACGGCGCA 59.006 50.000 10.83 0.00 33.77 6.09
4080 4711 1.266696 CGTGACTAATTAACGGCGCAC 60.267 52.381 10.83 2.31 33.77 5.34
4461 5092 1.006571 GGTCGTGCACTTCCTCGAA 60.007 57.895 16.19 0.00 34.23 3.71
4468 5099 0.606604 GCACTTCCTCGAAGGGTACA 59.393 55.000 5.59 0.00 44.17 2.90
4565 5210 4.147449 CGTCTGATCGGCCCTGCA 62.147 66.667 0.00 0.00 0.00 4.41
4566 5211 2.512515 GTCTGATCGGCCCTGCAC 60.513 66.667 0.00 0.00 0.00 4.57
4619 5265 4.336280 GCCCAAGACAAAACCTCTATTCT 58.664 43.478 0.00 0.00 0.00 2.40
4620 5266 5.497474 GCCCAAGACAAAACCTCTATTCTA 58.503 41.667 0.00 0.00 0.00 2.10
4621 5267 5.354513 GCCCAAGACAAAACCTCTATTCTAC 59.645 44.000 0.00 0.00 0.00 2.59
4622 5268 6.712276 CCCAAGACAAAACCTCTATTCTACT 58.288 40.000 0.00 0.00 0.00 2.57
4623 5269 6.819146 CCCAAGACAAAACCTCTATTCTACTC 59.181 42.308 0.00 0.00 0.00 2.59
4624 5270 7.386851 CCAAGACAAAACCTCTATTCTACTCA 58.613 38.462 0.00 0.00 0.00 3.41
4625 5271 7.547370 CCAAGACAAAACCTCTATTCTACTCAG 59.453 40.741 0.00 0.00 0.00 3.35
4796 5487 7.277098 TCGATACTTAAGAAATGGTACTTGCAC 59.723 37.037 10.09 0.00 0.00 4.57
4803 5494 4.870426 AGAAATGGTACTTGCACTGATACG 59.130 41.667 0.00 0.00 0.00 3.06
4809 5500 5.357596 TGGTACTTGCACTGATACGTATACA 59.642 40.000 8.34 7.67 0.00 2.29
4811 5502 6.197842 GGTACTTGCACTGATACGTATACAAC 59.802 42.308 8.34 0.00 0.00 3.32
4814 5505 4.099824 TGCACTGATACGTATACAACACG 58.900 43.478 8.34 0.00 44.80 4.49
4830 5521 2.483876 ACACGTTGGAGATCTGTGTTG 58.516 47.619 0.00 0.00 40.63 3.33
4843 5534 0.850100 TGTGTTGGGTCCTTGGTGAT 59.150 50.000 0.00 0.00 0.00 3.06
4891 5586 1.071385 GACCATGATGGCTCCGATCTT 59.929 52.381 12.25 0.00 42.67 2.40
4955 5651 4.218686 GGTGTGGTGGGGTGCCTT 62.219 66.667 0.00 0.00 0.00 4.35
4960 5656 3.897122 GGTGGGGTGCCTTGTCCA 61.897 66.667 0.00 0.00 0.00 4.02
5004 5700 0.105658 TGGCTTAGGCTACCGATCCT 60.106 55.000 7.43 0.00 38.73 3.24
5008 5704 2.317040 CTTAGGCTACCGATCCTTCCA 58.683 52.381 0.00 0.00 34.02 3.53
5063 5769 4.657824 CCGTGTGCCTCGTCGGTT 62.658 66.667 0.00 0.00 38.45 4.44
5064 5770 3.403057 CGTGTGCCTCGTCGGTTG 61.403 66.667 0.00 0.00 34.25 3.77
5065 5771 2.279918 GTGTGCCTCGTCGGTTGT 60.280 61.111 0.00 0.00 34.25 3.32
5066 5772 2.279851 TGTGCCTCGTCGGTTGTG 60.280 61.111 0.00 0.00 34.25 3.33
5067 5773 3.041940 GTGCCTCGTCGGTTGTGG 61.042 66.667 0.00 0.00 34.25 4.17
5105 5812 4.096003 GGTCGGCAGGCTTAGGCA 62.096 66.667 8.84 0.00 40.87 4.75
5108 5815 2.359850 CGGCAGGCTTAGGCAACA 60.360 61.111 8.84 0.00 40.87 3.33
5175 5884 2.161609 GGGCCTGTTGTCGTGAAAATAG 59.838 50.000 0.84 0.00 0.00 1.73
5184 5893 3.007074 TGTCGTGAAAATAGTGGTGGCTA 59.993 43.478 0.00 0.00 0.00 3.93
5208 5917 2.860136 CTCGTGCTCTTTTCGCATCATA 59.140 45.455 0.00 0.00 39.89 2.15
5217 5926 2.003196 TTCGCATCATAGCAACGTCA 57.997 45.000 0.00 0.00 0.00 4.35
5260 5969 2.012948 GGTCGTCGACGTGTTCCAC 61.013 63.158 34.40 24.00 40.80 4.02
5266 5975 0.173935 TCGACGTGTTCCACAACTGT 59.826 50.000 0.00 0.00 33.40 3.55
5299 6055 3.321039 TCAGCCTATGAGGTTCCATGAT 58.679 45.455 0.00 0.00 37.80 2.45
5329 6085 1.593006 CGAAGCTCTGTCGTTTGTTGT 59.407 47.619 0.00 0.00 33.80 3.32
5359 6115 2.002586 ACATGTCGGCTTCTCGATTTG 58.997 47.619 0.00 0.00 41.40 2.32
5369 6125 4.873827 GGCTTCTCGATTTGTATGGTGTAA 59.126 41.667 0.00 0.00 0.00 2.41
5431 6191 2.989840 CAGTTAGACAGACGAAGCCTTG 59.010 50.000 0.00 0.00 0.00 3.61
5432 6192 2.628657 AGTTAGACAGACGAAGCCTTGT 59.371 45.455 0.00 0.00 0.00 3.16
5449 6209 1.776662 TGTAGGCGATGGAGTTAGCT 58.223 50.000 0.00 0.00 0.00 3.32
5454 6214 2.158505 AGGCGATGGAGTTAGCTAGGTA 60.159 50.000 0.00 0.00 0.00 3.08
5470 6230 6.195700 AGCTAGGTATTTGGTAACTCTCAGA 58.804 40.000 0.00 0.00 31.28 3.27
5472 6232 7.345914 AGCTAGGTATTTGGTAACTCTCAGAAT 59.654 37.037 0.00 0.00 31.28 2.40
5473 6233 8.639761 GCTAGGTATTTGGTAACTCTCAGAATA 58.360 37.037 0.00 0.00 31.28 1.75
5541 6322 4.935352 CCATGACTTTCAGGGTGAAAAA 57.065 40.909 0.00 0.00 44.69 1.94
5548 6329 4.341235 ACTTTCAGGGTGAAAAACTAAGGC 59.659 41.667 3.82 0.00 44.69 4.35
5552 6333 2.445525 AGGGTGAAAAACTAAGGCCTGA 59.554 45.455 5.69 0.00 0.00 3.86
5553 6334 2.557056 GGGTGAAAAACTAAGGCCTGAC 59.443 50.000 5.69 0.00 0.00 3.51
5554 6335 2.557056 GGTGAAAAACTAAGGCCTGACC 59.443 50.000 5.69 0.00 39.61 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.317149 GATAGCCCAGCTGCCGAACT 62.317 60.000 8.66 2.88 40.10 3.01
14 15 2.505982 GATAGCCCAGCTGCCGAA 59.494 61.111 8.66 0.00 40.10 4.30
28 29 4.337060 CGCGTCGGCCGATGGATA 62.337 66.667 40.21 13.84 39.56 2.59
135 162 2.787915 GCTTTCAGCGCTAGTGGC 59.212 61.111 10.99 9.32 37.64 5.01
255 285 1.515519 GCGCCGAGTGATCACGTAA 60.516 57.895 19.85 0.00 36.20 3.18
316 350 0.981277 TACTAGGAGCCAAGCCACCC 60.981 60.000 0.00 0.00 0.00 4.61
490 526 2.375014 GGGTTTCCCTCCTTTTCACA 57.625 50.000 0.00 0.00 41.34 3.58
559 595 0.304705 CGCATAAATGTCGTGGGAGC 59.695 55.000 0.00 0.00 0.00 4.70
560 596 1.593006 GACGCATAAATGTCGTGGGAG 59.407 52.381 14.15 0.00 39.37 4.30
563 599 1.062002 GTGGACGCATAAATGTCGTGG 59.938 52.381 14.15 0.00 39.37 4.94
565 601 0.996462 CGTGGACGCATAAATGTCGT 59.004 50.000 10.65 10.65 40.95 4.34
567 603 1.006391 CGACGTGGACGCATAAATGTC 60.006 52.381 0.00 0.00 44.43 3.06
576 617 1.562575 ATCAAAACCGACGTGGACGC 61.563 55.000 10.46 0.00 44.43 5.19
587 628 1.214325 CGGGCCGGAAATCAAAACC 59.786 57.895 20.56 0.00 0.00 3.27
588 629 4.880899 CGGGCCGGAAATCAAAAC 57.119 55.556 20.56 0.00 0.00 2.43
611 653 2.867109 AATTGATAGAGATGCGGGGG 57.133 50.000 0.00 0.00 0.00 5.40
716 781 2.680339 CAGCAAGAGGGTTAAGCTAAGC 59.320 50.000 4.41 2.85 33.59 3.09
718 783 2.305927 AGCAGCAAGAGGGTTAAGCTAA 59.694 45.455 4.41 0.00 33.59 3.09
719 784 1.909302 AGCAGCAAGAGGGTTAAGCTA 59.091 47.619 4.41 0.00 33.59 3.32
720 785 0.695347 AGCAGCAAGAGGGTTAAGCT 59.305 50.000 4.41 0.00 35.63 3.74
721 786 0.807496 CAGCAGCAAGAGGGTTAAGC 59.193 55.000 0.00 0.00 0.00 3.09
722 787 0.807496 GCAGCAGCAAGAGGGTTAAG 59.193 55.000 0.00 0.00 41.58 1.85
723 788 0.609131 GGCAGCAGCAAGAGGGTTAA 60.609 55.000 2.65 0.00 44.61 2.01
724 789 1.002134 GGCAGCAGCAAGAGGGTTA 60.002 57.895 2.65 0.00 44.61 2.85
725 790 2.282745 GGCAGCAGCAAGAGGGTT 60.283 61.111 2.65 0.00 44.61 4.11
726 791 4.357279 GGGCAGCAGCAAGAGGGT 62.357 66.667 2.65 0.00 44.61 4.34
727 792 4.355720 TGGGCAGCAGCAAGAGGG 62.356 66.667 2.65 0.00 44.61 4.30
728 793 2.750637 CTGGGCAGCAGCAAGAGG 60.751 66.667 2.65 0.00 44.61 3.69
729 794 1.602888 AACTGGGCAGCAGCAAGAG 60.603 57.895 2.65 0.00 44.61 2.85
730 795 1.900016 CAACTGGGCAGCAGCAAGA 60.900 57.895 2.65 0.00 44.61 3.02
731 796 2.649034 CAACTGGGCAGCAGCAAG 59.351 61.111 2.65 2.32 44.61 4.01
732 797 3.608662 GCAACTGGGCAGCAGCAA 61.609 61.111 2.65 0.00 44.61 3.91
747 812 2.108976 GATCGATCGGGCAAGGCA 59.891 61.111 16.41 0.00 0.00 4.75
753 818 0.938008 GGAAACTTGATCGATCGGGC 59.062 55.000 20.03 8.20 0.00 6.13
772 837 2.097104 CGGCCGCGTGTTTATATACAAG 60.097 50.000 14.67 5.19 0.00 3.16
808 876 4.363990 CGCACGTCTGGTCTGGCT 62.364 66.667 0.00 0.00 0.00 4.75
917 993 0.179215 CTGTTGCGCGGACTTTGATC 60.179 55.000 8.83 0.00 0.00 2.92
921 997 1.566018 GCTACTGTTGCGCGGACTTT 61.566 55.000 8.83 4.63 0.00 2.66
922 998 2.027625 GCTACTGTTGCGCGGACTT 61.028 57.895 8.83 4.92 0.00 3.01
925 1001 4.752879 GGGCTACTGTTGCGCGGA 62.753 66.667 14.41 0.00 33.94 5.54
929 1005 2.046892 AGCTGGGCTACTGTTGCG 60.047 61.111 8.06 0.00 36.99 4.85
932 1008 0.818296 CGTAGAGCTGGGCTACTGTT 59.182 55.000 8.85 0.00 39.88 3.16
1090 1205 5.540400 AATATAGTGCATGCCAAGCAAAT 57.460 34.783 16.68 0.00 44.64 2.32
1099 1214 8.858003 ACATATACTCGTAATATAGTGCATGC 57.142 34.615 11.82 11.82 0.00 4.06
1110 1225 7.358066 CCACGTCAGTAACATATACTCGTAAT 58.642 38.462 0.00 0.00 30.39 1.89
1111 1226 6.718388 CCACGTCAGTAACATATACTCGTAA 58.282 40.000 0.00 0.00 30.39 3.18
1112 1227 5.277490 GCCACGTCAGTAACATATACTCGTA 60.277 44.000 0.00 0.00 30.39 3.43
1113 1228 4.497006 GCCACGTCAGTAACATATACTCGT 60.497 45.833 0.00 0.00 31.21 4.18
1114 1229 3.973135 GCCACGTCAGTAACATATACTCG 59.027 47.826 0.00 0.00 0.00 4.18
1115 1230 4.037684 AGGCCACGTCAGTAACATATACTC 59.962 45.833 5.01 0.00 0.00 2.59
1116 1231 3.958798 AGGCCACGTCAGTAACATATACT 59.041 43.478 5.01 0.00 0.00 2.12
1120 1235 2.100252 GCTAGGCCACGTCAGTAACATA 59.900 50.000 5.01 0.00 0.00 2.29
1139 1254 3.295228 GACGACGCATGCAAACGCT 62.295 57.895 19.57 9.97 0.00 5.07
1405 1524 2.223377 GTGCCGAGTAAGAAGTTGGTTG 59.777 50.000 0.00 0.00 32.60 3.77
1406 1525 2.158871 TGTGCCGAGTAAGAAGTTGGTT 60.159 45.455 0.00 0.00 32.60 3.67
1409 1528 3.059597 CACTTGTGCCGAGTAAGAAGTTG 60.060 47.826 0.00 0.00 0.00 3.16
1410 1529 3.131396 CACTTGTGCCGAGTAAGAAGTT 58.869 45.455 0.00 0.00 0.00 2.66
1413 1532 3.462483 TTCACTTGTGCCGAGTAAGAA 57.538 42.857 0.00 0.00 0.00 2.52
1414 1533 3.128349 GTTTCACTTGTGCCGAGTAAGA 58.872 45.455 0.00 0.00 0.00 2.10
1415 1534 3.059597 CAGTTTCACTTGTGCCGAGTAAG 60.060 47.826 0.00 0.00 0.00 2.34
1417 1536 2.479837 CAGTTTCACTTGTGCCGAGTA 58.520 47.619 0.00 0.00 0.00 2.59
1418 1537 1.299541 CAGTTTCACTTGTGCCGAGT 58.700 50.000 0.00 0.00 0.00 4.18
1419 1538 0.040958 GCAGTTTCACTTGTGCCGAG 60.041 55.000 0.00 0.00 0.00 4.63
1420 1539 0.746204 TGCAGTTTCACTTGTGCCGA 60.746 50.000 0.00 0.00 34.91 5.54
1421 1540 0.311790 ATGCAGTTTCACTTGTGCCG 59.688 50.000 0.00 0.00 34.91 5.69
1422 1541 1.337703 TCATGCAGTTTCACTTGTGCC 59.662 47.619 0.00 0.00 34.91 5.01
1424 1543 3.304257 GGACTCATGCAGTTTCACTTGTG 60.304 47.826 0.00 0.00 34.41 3.33
1425 1544 2.880890 GGACTCATGCAGTTTCACTTGT 59.119 45.455 0.00 0.00 34.41 3.16
1427 1546 3.498774 AGGACTCATGCAGTTTCACTT 57.501 42.857 0.00 0.00 34.41 3.16
1428 1547 4.202357 TGTTAGGACTCATGCAGTTTCACT 60.202 41.667 0.00 0.00 34.41 3.41
1430 1549 4.350368 TGTTAGGACTCATGCAGTTTCA 57.650 40.909 0.00 0.00 34.41 2.69
1431 1550 5.689383 TTTGTTAGGACTCATGCAGTTTC 57.311 39.130 0.00 0.00 34.41 2.78
1432 1551 5.183904 GGATTTGTTAGGACTCATGCAGTTT 59.816 40.000 0.00 0.00 34.41 2.66
1433 1552 4.702131 GGATTTGTTAGGACTCATGCAGTT 59.298 41.667 0.00 0.00 34.41 3.16
1434 1553 4.263462 TGGATTTGTTAGGACTCATGCAGT 60.263 41.667 0.00 0.00 38.45 4.40
1437 1556 3.629398 CCTGGATTTGTTAGGACTCATGC 59.371 47.826 0.00 0.00 33.33 4.06
1438 1557 4.848357 ACCTGGATTTGTTAGGACTCATG 58.152 43.478 0.00 0.00 35.55 3.07
1441 1560 3.263425 TGGACCTGGATTTGTTAGGACTC 59.737 47.826 0.00 0.00 35.55 3.36
1445 1573 2.723273 GGTGGACCTGGATTTGTTAGG 58.277 52.381 0.00 0.00 37.61 2.69
1467 1595 2.664851 ACACCATGCACACGACGG 60.665 61.111 0.00 0.00 0.00 4.79
1469 1597 1.279539 CACACACCATGCACACGAC 59.720 57.895 0.00 0.00 0.00 4.34
1470 1598 0.746204 AACACACACCATGCACACGA 60.746 50.000 0.00 0.00 0.00 4.35
1471 1599 0.100325 AAACACACACCATGCACACG 59.900 50.000 0.00 0.00 0.00 4.49
1472 1600 2.192624 GAAAACACACACCATGCACAC 58.807 47.619 0.00 0.00 0.00 3.82
1473 1601 1.821136 TGAAAACACACACCATGCACA 59.179 42.857 0.00 0.00 0.00 4.57
1474 1602 2.462889 CTGAAAACACACACCATGCAC 58.537 47.619 0.00 0.00 0.00 4.57
1475 1603 1.408340 CCTGAAAACACACACCATGCA 59.592 47.619 0.00 0.00 0.00 3.96
1476 1604 1.269726 CCCTGAAAACACACACCATGC 60.270 52.381 0.00 0.00 0.00 4.06
1477 1605 2.034558 GTCCCTGAAAACACACACCATG 59.965 50.000 0.00 0.00 0.00 3.66
1478 1606 2.306847 GTCCCTGAAAACACACACCAT 58.693 47.619 0.00 0.00 0.00 3.55
1479 1607 1.004862 TGTCCCTGAAAACACACACCA 59.995 47.619 0.00 0.00 0.00 4.17
1480 1608 1.757682 TGTCCCTGAAAACACACACC 58.242 50.000 0.00 0.00 0.00 4.16
1516 1644 0.321210 CCGTGGCCGCCATCATTATA 60.321 55.000 16.96 0.00 35.28 0.98
1633 1761 2.380410 CCTGTGCGCCACGTAGAAC 61.380 63.158 4.18 0.00 37.14 3.01
1734 1862 7.259290 TCCAGACAACACAAAGTATCTTTTC 57.741 36.000 0.00 0.00 0.00 2.29
1735 1863 7.823745 ATCCAGACAACACAAAGTATCTTTT 57.176 32.000 0.00 0.00 0.00 2.27
1736 1864 7.502226 TCAATCCAGACAACACAAAGTATCTTT 59.498 33.333 0.00 0.00 0.00 2.52
1784 1925 2.351060 GCATGTGTCATGTGTGTTGAGG 60.351 50.000 10.68 0.00 0.00 3.86
1906 2051 3.367743 ACGTACGCGAAGGCCAGA 61.368 61.111 15.93 0.00 42.00 3.86
1918 2063 0.385223 AGTCGAACGACAGCACGTAC 60.385 55.000 25.13 0.29 46.76 3.67
1927 2072 0.109226 CCCTGAGGAAGTCGAACGAC 60.109 60.000 17.79 17.79 39.50 4.34
1930 2075 1.079057 GGCCCTGAGGAAGTCGAAC 60.079 63.158 0.00 0.00 33.47 3.95
2048 2193 4.835284 TGCCTATGTGTGTTTAGATGGA 57.165 40.909 0.00 0.00 0.00 3.41
2075 2221 5.445540 CGAACGAAAGGGAAATACTACAAGC 60.446 44.000 0.00 0.00 0.00 4.01
2079 2225 4.498241 ACCGAACGAAAGGGAAATACTAC 58.502 43.478 0.00 0.00 0.00 2.73
2131 2287 8.470805 ACTGACACACTAGTATTTCTTGGATAG 58.529 37.037 0.00 0.00 0.00 2.08
2143 2299 6.717997 TGAAATCTGGTACTGACACACTAGTA 59.282 38.462 0.00 0.00 39.59 1.82
2167 2323 4.508124 GCTAGTGAATTACCCTCGTGAATG 59.492 45.833 0.00 0.00 0.00 2.67
2185 2341 5.700373 GCCGATAAGTACTGTACTAGCTAGT 59.300 44.000 28.50 28.50 38.26 2.57
2320 2492 1.805945 CTACTGTTCCCAGCGCGTC 60.806 63.158 8.43 0.00 42.81 5.19
2327 2499 1.122632 TCGGCAACCTACTGTTCCCA 61.123 55.000 0.00 0.00 34.07 4.37
2336 2508 0.752009 AGAGCTCGATCGGCAACCTA 60.752 55.000 24.07 1.36 0.00 3.08
2337 2509 2.055042 AGAGCTCGATCGGCAACCT 61.055 57.895 24.07 16.56 0.00 3.50
2390 2568 2.482721 GACATAAACACGTGAACAGGGG 59.517 50.000 25.01 7.63 0.00 4.79
2401 2579 1.326548 GTGCCCGATCGACATAAACAC 59.673 52.381 18.66 9.58 0.00 3.32
2477 2943 1.953686 GTGGTACCTGCAGCAAAAAGA 59.046 47.619 14.36 0.00 0.00 2.52
2734 3222 2.355481 GCGTGTCCCGTTCGAGTT 60.355 61.111 0.00 0.00 39.32 3.01
2782 3270 2.853731 AGTACGATCCAGAAGCTTCG 57.146 50.000 20.43 14.71 37.60 3.79
2803 3291 5.803967 GGATCAAACTACGTACTGGTAAGTG 59.196 44.000 9.01 3.43 37.19 3.16
2820 3336 3.064207 GCAACTACACAGACGGATCAAA 58.936 45.455 0.00 0.00 0.00 2.69
2853 3369 1.448985 GTCCGCCTCTGCAATAAACA 58.551 50.000 0.00 0.00 37.32 2.83
2925 3446 4.862092 CGGCGTCGCTGCAGAGAT 62.862 66.667 23.33 0.00 36.28 2.75
2977 3498 1.447317 CCCTAATGGCGCGCTTCAAT 61.447 55.000 32.29 16.82 0.00 2.57
3018 3550 0.891373 GCTGTGCTGAGTCCTGACTA 59.109 55.000 0.00 0.00 42.66 2.59
3025 3557 0.718343 GACGATTGCTGTGCTGAGTC 59.282 55.000 0.00 0.00 0.00 3.36
3030 3562 0.243907 AGTACGACGATTGCTGTGCT 59.756 50.000 0.00 0.00 0.00 4.40
3055 3587 5.220854 GCTGCTCGATTGCTTTCCTAATTAA 60.221 40.000 0.00 0.00 0.00 1.40
3057 3589 3.065925 GCTGCTCGATTGCTTTCCTAATT 59.934 43.478 0.00 0.00 0.00 1.40
3089 3621 2.309162 AGTGGCTGACTCTCCTGTAGTA 59.691 50.000 0.00 0.00 0.00 1.82
3096 3628 2.116983 TTGGCAGTGGCTGACTCTCC 62.117 60.000 18.53 0.00 40.76 3.71
3097 3629 0.952984 GTTGGCAGTGGCTGACTCTC 60.953 60.000 18.53 0.00 40.76 3.20
3099 3631 1.968540 GGTTGGCAGTGGCTGACTC 60.969 63.158 18.53 7.22 40.76 3.36
3101 3633 1.827789 TTGGTTGGCAGTGGCTGAC 60.828 57.895 18.53 15.33 40.49 3.51
3103 3635 1.829533 AGTTGGTTGGCAGTGGCTG 60.830 57.895 18.53 0.00 40.87 4.85
3104 3636 1.829533 CAGTTGGTTGGCAGTGGCT 60.830 57.895 18.53 0.00 40.87 4.75
3105 3637 1.675720 AACAGTTGGTTGGCAGTGGC 61.676 55.000 10.30 10.30 38.60 5.01
3106 3638 2.503775 AACAGTTGGTTGGCAGTGG 58.496 52.632 0.00 0.00 38.60 4.00
3136 3700 4.226168 AGATTTCCTGGAGACTTAAGTGGG 59.774 45.833 14.14 7.25 0.00 4.61
3152 3716 6.872020 TGCTGTTAACAGTACAGTAGATTTCC 59.128 38.462 30.90 13.41 45.45 3.13
3158 3722 7.435488 GGATACATGCTGTTAACAGTACAGTAG 59.565 40.741 30.90 18.71 45.45 2.57
3159 3723 7.262772 GGATACATGCTGTTAACAGTACAGTA 58.737 38.462 30.90 28.77 45.45 2.74
3160 3724 6.106673 GGATACATGCTGTTAACAGTACAGT 58.893 40.000 30.90 27.88 45.45 3.55
3162 3726 5.106442 CGGATACATGCTGTTAACAGTACA 58.894 41.667 30.90 23.00 45.45 2.90
3163 3727 4.025979 GCGGATACATGCTGTTAACAGTAC 60.026 45.833 30.90 18.76 45.45 2.73
3164 3728 4.116961 GCGGATACATGCTGTTAACAGTA 58.883 43.478 30.90 28.36 45.45 2.74
3165 3729 2.936498 GCGGATACATGCTGTTAACAGT 59.064 45.455 30.90 17.83 45.45 3.55
3166 3730 3.198068 AGCGGATACATGCTGTTAACAG 58.802 45.455 27.85 27.85 46.40 3.16
3167 3731 3.118775 AGAGCGGATACATGCTGTTAACA 60.119 43.478 8.28 8.28 42.60 2.41
3168 3732 3.246226 CAGAGCGGATACATGCTGTTAAC 59.754 47.826 0.00 0.00 42.60 2.01
3174 3750 3.482156 AATTCAGAGCGGATACATGCT 57.518 42.857 0.00 0.00 45.90 3.79
3200 3776 0.694783 TGTCACCCACCCAGGTACAA 60.695 55.000 0.00 0.00 38.39 2.41
3202 3778 1.373812 GTGTCACCCACCCAGGTAC 59.626 63.158 0.00 0.00 38.39 3.34
3203 3779 2.211410 CGTGTCACCCACCCAGGTA 61.211 63.158 0.00 0.00 41.26 3.08
3204 3780 3.556306 CGTGTCACCCACCCAGGT 61.556 66.667 0.00 0.00 41.26 4.00
3206 3782 1.597027 GTTCGTGTCACCCACCCAG 60.597 63.158 0.00 0.00 41.26 4.45
3207 3783 2.506962 GTTCGTGTCACCCACCCA 59.493 61.111 0.00 0.00 41.26 4.51
3209 3785 1.072505 ATGGTTCGTGTCACCCACC 59.927 57.895 10.23 10.23 41.26 4.61
3353 3934 2.606519 ACTAGGAAGGCCCGCACA 60.607 61.111 0.00 0.00 40.87 4.57
3517 4098 4.385405 AGTGGCAGTGAGAGGCGC 62.385 66.667 0.00 0.00 41.75 6.53
3519 4100 2.046507 CCAGTGGCAGTGAGAGGC 60.047 66.667 23.61 0.00 0.00 4.70
3535 4118 4.021981 AGCAAAAACATTCAGAACCTAGCC 60.022 41.667 0.00 0.00 0.00 3.93
3536 4119 5.126396 AGCAAAAACATTCAGAACCTAGC 57.874 39.130 0.00 0.00 0.00 3.42
3541 4124 5.403466 GTGGATGAGCAAAAACATTCAGAAC 59.597 40.000 0.00 0.00 33.42 3.01
3545 4128 3.896888 AGGTGGATGAGCAAAAACATTCA 59.103 39.130 0.00 0.00 30.68 2.57
3555 4139 1.649321 AGACAAGAGGTGGATGAGCA 58.351 50.000 0.00 0.00 0.00 4.26
3556 4140 2.777832 AAGACAAGAGGTGGATGAGC 57.222 50.000 0.00 0.00 0.00 4.26
3557 4141 5.065914 TGAAAAAGACAAGAGGTGGATGAG 58.934 41.667 0.00 0.00 0.00 2.90
3558 4142 5.047566 TGAAAAAGACAAGAGGTGGATGA 57.952 39.130 0.00 0.00 0.00 2.92
3559 4143 5.972107 ATGAAAAAGACAAGAGGTGGATG 57.028 39.130 0.00 0.00 0.00 3.51
3560 4144 5.835280 ACAATGAAAAAGACAAGAGGTGGAT 59.165 36.000 0.00 0.00 0.00 3.41
3562 4146 5.520376 ACAATGAAAAAGACAAGAGGTGG 57.480 39.130 0.00 0.00 0.00 4.61
3563 4147 6.237915 GCAAACAATGAAAAAGACAAGAGGTG 60.238 38.462 0.00 0.00 0.00 4.00
3564 4148 5.812127 GCAAACAATGAAAAAGACAAGAGGT 59.188 36.000 0.00 0.00 0.00 3.85
3575 4167 1.849219 GCGTCGTGCAAACAATGAAAA 59.151 42.857 0.00 0.00 45.45 2.29
3577 4169 3.156401 GCGTCGTGCAAACAATGAA 57.844 47.368 0.00 0.00 45.45 2.57
3578 4170 4.912173 GCGTCGTGCAAACAATGA 57.088 50.000 0.00 0.00 45.45 2.57
3587 4179 1.080705 AGGAAGTACTGCGTCGTGC 60.081 57.895 0.00 0.00 46.70 5.34
3588 4180 2.725644 CAGGAAGTACTGCGTCGTG 58.274 57.895 0.00 0.00 35.79 4.35
3633 4225 0.105593 GAATGGCCAGCTCGATCTGA 59.894 55.000 17.59 0.00 36.19 3.27
3651 4243 1.283029 CCCATTCTTTCAGCCCTGAGA 59.717 52.381 0.00 0.00 41.13 3.27
3660 4252 2.552315 GACTTTGACGCCCATTCTTTCA 59.448 45.455 0.00 0.00 0.00 2.69
3663 4255 1.156736 CGACTTTGACGCCCATTCTT 58.843 50.000 0.00 0.00 0.00 2.52
3684 4276 1.250840 TGTTGAGAGCTGCGAGGCTA 61.251 55.000 0.00 0.00 43.20 3.93
3730 4323 3.494336 CAGCAGCTAGGTGCACGC 61.494 66.667 39.52 19.72 46.60 5.34
3752 4347 4.941263 AGACCGTACATGCACATTTTACAT 59.059 37.500 0.00 0.00 0.00 2.29
3759 4354 0.744414 GCCAGACCGTACATGCACAT 60.744 55.000 0.00 0.00 0.00 3.21
3760 4355 1.375396 GCCAGACCGTACATGCACA 60.375 57.895 0.00 0.00 0.00 4.57
3765 4360 6.869206 ATATTATTAGGCCAGACCGTACAT 57.131 37.500 5.01 0.00 46.52 2.29
3767 4362 9.095065 CAATTATATTATTAGGCCAGACCGTAC 57.905 37.037 5.01 0.00 46.52 3.67
3768 4363 9.038072 TCAATTATATTATTAGGCCAGACCGTA 57.962 33.333 5.01 0.00 46.52 4.02
3769 4364 7.913789 TCAATTATATTATTAGGCCAGACCGT 58.086 34.615 5.01 0.00 46.52 4.83
3770 4365 8.786826 TTCAATTATATTATTAGGCCAGACCG 57.213 34.615 5.01 0.00 46.52 4.79
3787 4382 9.888878 CTCGTTCTGCATCATTTATTCAATTAT 57.111 29.630 0.00 0.00 0.00 1.28
3788 4383 8.344831 CCTCGTTCTGCATCATTTATTCAATTA 58.655 33.333 0.00 0.00 0.00 1.40
3789 4384 7.198390 CCTCGTTCTGCATCATTTATTCAATT 58.802 34.615 0.00 0.00 0.00 2.32
3790 4385 6.732154 CCTCGTTCTGCATCATTTATTCAAT 58.268 36.000 0.00 0.00 0.00 2.57
3791 4386 5.449041 GCCTCGTTCTGCATCATTTATTCAA 60.449 40.000 0.00 0.00 0.00 2.69
3792 4387 4.035558 GCCTCGTTCTGCATCATTTATTCA 59.964 41.667 0.00 0.00 0.00 2.57
3793 4388 4.531332 GCCTCGTTCTGCATCATTTATTC 58.469 43.478 0.00 0.00 0.00 1.75
3794 4389 3.002656 CGCCTCGTTCTGCATCATTTATT 59.997 43.478 0.00 0.00 0.00 1.40
3795 4390 2.545526 CGCCTCGTTCTGCATCATTTAT 59.454 45.455 0.00 0.00 0.00 1.40
3796 4391 1.933181 CGCCTCGTTCTGCATCATTTA 59.067 47.619 0.00 0.00 0.00 1.40
3797 4392 0.729116 CGCCTCGTTCTGCATCATTT 59.271 50.000 0.00 0.00 0.00 2.32
3798 4393 1.709147 GCGCCTCGTTCTGCATCATT 61.709 55.000 0.00 0.00 0.00 2.57
3799 4394 2.176273 GCGCCTCGTTCTGCATCAT 61.176 57.895 0.00 0.00 0.00 2.45
3800 4395 2.815211 GCGCCTCGTTCTGCATCA 60.815 61.111 0.00 0.00 0.00 3.07
3801 4396 2.510238 AGCGCCTCGTTCTGCATC 60.510 61.111 2.29 0.00 0.00 3.91
3802 4397 2.510238 GAGCGCCTCGTTCTGCAT 60.510 61.111 2.29 0.00 34.45 3.96
3990 4585 0.531532 CGCGGATCTTCTTCCTGCAT 60.532 55.000 0.00 0.00 36.05 3.96
4060 4691 0.993532 TGCGCCGTTAATTAGTCACG 59.006 50.000 4.18 1.94 0.00 4.35
4086 4717 1.078143 AAGACAAGATCGCCCCAGC 60.078 57.895 0.00 0.00 0.00 4.85
4087 4718 0.250234 TCAAGACAAGATCGCCCCAG 59.750 55.000 0.00 0.00 0.00 4.45
4088 4719 0.690192 TTCAAGACAAGATCGCCCCA 59.310 50.000 0.00 0.00 0.00 4.96
4089 4720 1.087501 GTTCAAGACAAGATCGCCCC 58.912 55.000 0.00 0.00 0.00 5.80
4090 4721 1.734465 CAGTTCAAGACAAGATCGCCC 59.266 52.381 0.00 0.00 0.00 6.13
4091 4722 1.129437 GCAGTTCAAGACAAGATCGCC 59.871 52.381 0.00 0.00 0.00 5.54
4092 4723 1.800586 TGCAGTTCAAGACAAGATCGC 59.199 47.619 0.00 0.00 0.00 4.58
4093 4724 3.320626 TCTGCAGTTCAAGACAAGATCG 58.679 45.455 14.67 0.00 0.00 3.69
4094 4725 4.934001 TCATCTGCAGTTCAAGACAAGATC 59.066 41.667 14.67 0.00 0.00 2.75
4095 4726 4.903054 TCATCTGCAGTTCAAGACAAGAT 58.097 39.130 14.67 0.00 0.00 2.40
4096 4727 4.341366 TCATCTGCAGTTCAAGACAAGA 57.659 40.909 14.67 0.00 0.00 3.02
4097 4728 4.694037 TCATCATCTGCAGTTCAAGACAAG 59.306 41.667 14.67 1.23 0.00 3.16
4098 4729 4.453478 GTCATCATCTGCAGTTCAAGACAA 59.547 41.667 14.67 0.00 0.00 3.18
4099 4730 3.999001 GTCATCATCTGCAGTTCAAGACA 59.001 43.478 14.67 0.00 0.00 3.41
4166 4797 1.784387 AGGTACTGCTGGTCCTCCT 59.216 57.895 0.00 0.00 37.18 3.69
4386 5017 2.973899 GAGAACTCGCAGGAGCCA 59.026 61.111 0.00 0.00 44.48 4.75
4461 5092 2.913578 TCGTGGTGCGTGTACCCT 60.914 61.111 4.63 0.00 40.09 4.34
4565 5210 2.032620 CATAGCTAGACGGAAGGTGGT 58.967 52.381 0.00 0.00 0.00 4.16
4566 5211 1.341531 CCATAGCTAGACGGAAGGTGG 59.658 57.143 0.00 0.00 0.00 4.61
4619 5265 8.027771 GTCGAGAAGGAAAAAGAATACTGAGTA 58.972 37.037 0.00 0.00 0.00 2.59
4620 5266 6.869388 GTCGAGAAGGAAAAAGAATACTGAGT 59.131 38.462 0.00 0.00 0.00 3.41
4621 5267 6.034044 CGTCGAGAAGGAAAAAGAATACTGAG 59.966 42.308 0.00 0.00 0.00 3.35
4622 5268 5.862323 CGTCGAGAAGGAAAAAGAATACTGA 59.138 40.000 0.00 0.00 0.00 3.41
4623 5269 5.634020 ACGTCGAGAAGGAAAAAGAATACTG 59.366 40.000 0.00 0.00 0.00 2.74
4624 5270 5.780984 ACGTCGAGAAGGAAAAAGAATACT 58.219 37.500 0.00 0.00 0.00 2.12
4625 5271 7.752557 ATACGTCGAGAAGGAAAAAGAATAC 57.247 36.000 0.00 0.00 0.00 1.89
4735 5425 3.374058 CGTCCTTTTGCCTCGAATGTATT 59.626 43.478 0.00 0.00 0.00 1.89
4803 5494 5.288712 CACAGATCTCCAACGTGTTGTATAC 59.711 44.000 11.45 0.00 38.85 1.47
4809 5500 2.910688 ACACAGATCTCCAACGTGTT 57.089 45.000 9.37 0.00 37.53 3.32
4811 5502 1.800586 CCAACACAGATCTCCAACGTG 59.199 52.381 8.23 8.23 0.00 4.49
4814 5505 2.427506 GACCCAACACAGATCTCCAAC 58.572 52.381 0.00 0.00 0.00 3.77
4830 5521 2.301346 CTGCATTATCACCAAGGACCC 58.699 52.381 0.00 0.00 0.00 4.46
4843 5534 2.487775 ACCATACCCACTCCTGCATTA 58.512 47.619 0.00 0.00 0.00 1.90
4954 5650 2.194597 GGGCACACCACTGGACAA 59.805 61.111 0.71 0.00 39.85 3.18
4955 5651 3.884774 GGGGCACACCACTGGACA 61.885 66.667 0.71 0.00 42.91 4.02
4991 5687 1.694696 GATTGGAAGGATCGGTAGCCT 59.305 52.381 0.00 0.00 45.89 4.58
4994 5690 4.526262 AGATCAGATTGGAAGGATCGGTAG 59.474 45.833 0.00 0.00 40.74 3.18
4996 5692 3.070734 CAGATCAGATTGGAAGGATCGGT 59.929 47.826 0.00 0.00 40.74 4.69
4997 5693 3.556633 CCAGATCAGATTGGAAGGATCGG 60.557 52.174 0.00 0.00 40.74 4.18
5004 5700 1.565759 CCCACCCAGATCAGATTGGAA 59.434 52.381 11.30 0.00 36.55 3.53
5008 5704 1.285962 CCAACCCACCCAGATCAGATT 59.714 52.381 0.00 0.00 0.00 2.40
5105 5812 1.518056 CGTGCCTGCCAACATCTGTT 61.518 55.000 0.00 0.00 39.12 3.16
5108 5815 3.058160 GCGTGCCTGCCAACATCT 61.058 61.111 0.00 0.00 0.00 2.90
5161 5870 2.550606 GCCACCACTATTTTCACGACAA 59.449 45.455 0.00 0.00 0.00 3.18
5164 5873 2.851263 AGCCACCACTATTTTCACGA 57.149 45.000 0.00 0.00 0.00 4.35
5175 5884 1.521681 GCACGAGGATAGCCACCAC 60.522 63.158 0.00 0.00 36.29 4.16
5184 5893 0.037326 TGCGAAAAGAGCACGAGGAT 60.037 50.000 0.00 0.00 40.01 3.24
5208 5917 2.159099 ACCGATCATGTATGACGTTGCT 60.159 45.455 0.00 0.00 40.03 3.91
5217 5926 2.163509 CGAGGAGGACCGATCATGTAT 58.836 52.381 0.00 0.00 41.83 2.29
5260 5969 2.868583 CTGATATCTCCGGCAACAGTTG 59.131 50.000 9.12 9.12 0.00 3.16
5266 5975 2.009681 TAGGCTGATATCTCCGGCAA 57.990 50.000 3.98 0.00 34.21 4.52
5329 6085 1.601703 CCGACATGTCCCATGGTGA 59.398 57.895 20.03 4.83 0.00 4.02
5359 6115 3.670625 TCCACAGCTGTTTACACCATAC 58.329 45.455 18.94 0.00 0.00 2.39
5369 6125 1.131638 TGACCTTCTCCACAGCTGTT 58.868 50.000 18.94 0.00 0.00 3.16
5431 6191 2.229302 CCTAGCTAACTCCATCGCCTAC 59.771 54.545 0.00 0.00 0.00 3.18
5432 6192 2.158505 ACCTAGCTAACTCCATCGCCTA 60.159 50.000 0.00 0.00 0.00 3.93
5445 6205 7.351952 TCTGAGAGTTACCAAATACCTAGCTA 58.648 38.462 0.00 0.00 0.00 3.32
5454 6214 7.335422 CACTGCTTATTCTGAGAGTTACCAAAT 59.665 37.037 0.00 0.00 0.00 2.32
5470 6230 7.472334 AAATGAATTCCTGACACTGCTTATT 57.528 32.000 2.27 0.00 0.00 1.40
5472 6232 6.899393 AAAATGAATTCCTGACACTGCTTA 57.101 33.333 2.27 0.00 0.00 3.09
5473 6233 5.796424 AAAATGAATTCCTGACACTGCTT 57.204 34.783 2.27 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.