Multiple sequence alignment - TraesCS5B01G219100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G219100 chr5B 100.000 5718 0 0 1 5718 392270791 392265074 0.000000e+00 10560.0
1 TraesCS5B01G219100 chr5B 87.421 1892 198 29 1102 2977 586355481 586353614 0.000000e+00 2139.0
2 TraesCS5B01G219100 chr5B 85.551 962 109 9 3769 4703 586353165 586352207 0.000000e+00 979.0
3 TraesCS5B01G219100 chr5B 92.025 163 12 1 5315 5476 256613506 256613344 1.600000e-55 228.0
4 TraesCS5B01G219100 chr5A 94.034 5179 203 53 167 5295 436634144 436629022 0.000000e+00 7755.0
5 TraesCS5B01G219100 chr5A 87.500 1888 200 25 1103 2977 597663661 597661797 0.000000e+00 2146.0
6 TraesCS5B01G219100 chr5A 87.131 948 105 10 3769 4703 597661321 597660378 0.000000e+00 1059.0
7 TraesCS5B01G219100 chr5A 97.222 36 1 0 3373 3408 436630897 436630862 1.720000e-05 62.1
8 TraesCS5B01G219100 chr5D 96.224 3310 98 10 75 3377 335236332 335233043 0.000000e+00 5395.0
9 TraesCS5B01G219100 chr5D 96.200 1921 52 11 3373 5280 335233016 335231104 0.000000e+00 3123.0
10 TraesCS5B01G219100 chr5D 84.585 2264 264 56 749 2977 478469595 478467382 0.000000e+00 2169.0
11 TraesCS5B01G219100 chr5D 86.175 962 103 12 3769 4703 478466940 478465982 0.000000e+00 1013.0
12 TraesCS5B01G219100 chr5D 89.027 401 37 3 1243 1639 294359401 294359004 1.850000e-134 490.0
13 TraesCS5B01G219100 chr4A 85.459 392 52 4 1247 1637 316873408 316873021 2.480000e-108 403.0
14 TraesCS5B01G219100 chr4A 93.711 159 10 0 5318 5476 637865288 637865130 7.400000e-59 239.0
15 TraesCS5B01G219100 chr2B 94.220 173 8 2 5548 5718 586900511 586900339 4.390000e-66 263.0
16 TraesCS5B01G219100 chr2B 91.515 165 11 3 5315 5477 454080650 454080487 2.070000e-54 224.0
17 TraesCS5B01G219100 chr3B 96.226 159 6 0 5318 5476 152215307 152215465 1.580000e-65 261.0
18 TraesCS5B01G219100 chr7A 94.611 167 8 1 5553 5718 217521567 217521733 2.040000e-64 257.0
19 TraesCS5B01G219100 chr1D 94.578 166 8 1 5554 5718 366646990 366646825 7.350000e-64 255.0
20 TraesCS5B01G219100 chr1D 91.617 167 10 4 5315 5479 415400415 415400251 1.600000e-55 228.0
21 TraesCS5B01G219100 chr6B 94.545 165 8 1 5555 5718 555674508 555674672 2.640000e-63 254.0
22 TraesCS5B01G219100 chr6A 94.545 165 8 1 5555 5718 223809932 223809768 2.640000e-63 254.0
23 TraesCS5B01G219100 chr6A 94.545 165 8 1 5555 5718 384349144 384349308 2.640000e-63 254.0
24 TraesCS5B01G219100 chr6A 91.716 169 12 2 5311 5478 22166342 22166175 3.440000e-57 233.0
25 TraesCS5B01G219100 chr6A 89.266 177 16 2 5318 5494 23859554 23859727 9.650000e-53 219.0
26 TraesCS5B01G219100 chr3A 94.545 165 8 1 5555 5718 223632080 223632244 2.640000e-63 254.0
27 TraesCS5B01G219100 chr2A 94.545 165 8 1 5555 5718 500841245 500841081 2.640000e-63 254.0
28 TraesCS5B01G219100 chr4D 93.491 169 10 1 5551 5718 35663660 35663828 3.420000e-62 250.0
29 TraesCS5B01G219100 chr3D 93.373 166 10 1 5315 5479 47779467 47779302 1.590000e-60 244.0
30 TraesCS5B01G219100 chr6D 93.082 159 11 0 5318 5476 320707316 320707158 3.440000e-57 233.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G219100 chr5B 392265074 392270791 5717 True 10560.00 10560 100.0000 1 5718 1 chr5B.!!$R2 5717
1 TraesCS5B01G219100 chr5B 586352207 586355481 3274 True 1559.00 2139 86.4860 1102 4703 2 chr5B.!!$R3 3601
2 TraesCS5B01G219100 chr5A 436629022 436634144 5122 True 3908.55 7755 95.6280 167 5295 2 chr5A.!!$R1 5128
3 TraesCS5B01G219100 chr5A 597660378 597663661 3283 True 1602.50 2146 87.3155 1103 4703 2 chr5A.!!$R2 3600
4 TraesCS5B01G219100 chr5D 335231104 335236332 5228 True 4259.00 5395 96.2120 75 5280 2 chr5D.!!$R2 5205
5 TraesCS5B01G219100 chr5D 478465982 478469595 3613 True 1591.00 2169 85.3800 749 4703 2 chr5D.!!$R3 3954

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.317436 CGAGATCTGTACGCAGCCTC 60.317 60.0 0.00 0.00 42.29 4.70 F
270 273 0.329596 CCAAGCAAACCCTAGCCTCT 59.670 55.0 0.00 0.00 0.00 3.69 F
728 734 0.378610 TCTCTGCTCATACACGCGAG 59.621 55.0 15.93 7.88 0.00 5.03 F
1968 2009 0.178068 AGTTGAACGTGTGGAGCAGT 59.822 50.0 0.00 0.00 0.00 4.40 F
2750 2791 2.143008 TTTCAGTTGCTCGCGACTTA 57.857 45.0 3.71 0.00 38.53 2.24 F
4396 4557 0.459585 GCAACGAGAGGGCGTATGAA 60.460 55.0 0.00 0.00 44.86 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1169 1207 1.000771 CTCGTCCACCTCCTCCTCA 60.001 63.158 0.00 0.0 0.00 3.86 R
1727 1765 1.140852 TCCGGATCCACAACATCATCC 59.859 52.381 13.41 0.0 32.75 3.51 R
2726 2767 2.096218 GTCGCGAGCAACTGAAAATTCT 60.096 45.455 10.24 0.0 0.00 2.40 R
3156 3217 1.073025 CTACAACTGGGCAGCACCA 59.927 57.895 0.00 0.0 42.05 4.17 R
4537 4704 1.075674 CTGCCCAGAGCCTCCTCTA 60.076 63.158 0.00 0.0 46.59 2.43 R
5554 5758 0.039618 AAACCCGGACGGAGGTAGTA 59.960 55.000 13.13 0.0 34.45 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.603242 AAAATATATAAAACCGCGAGATCTGT 57.397 30.769 8.23 0.00 0.00 3.41
27 28 9.701098 AAAATATATAAAACCGCGAGATCTGTA 57.299 29.630 8.23 0.00 0.00 2.74
28 29 8.684973 AATATATAAAACCGCGAGATCTGTAC 57.315 34.615 8.23 0.00 0.00 2.90
29 30 1.625616 AAAACCGCGAGATCTGTACG 58.374 50.000 8.23 0.00 0.00 3.67
34 35 4.310672 CGAGATCTGTACGCAGCC 57.689 61.111 0.00 0.00 42.29 4.85
35 36 1.730487 CGAGATCTGTACGCAGCCT 59.270 57.895 0.00 0.00 42.29 4.58
36 37 0.317436 CGAGATCTGTACGCAGCCTC 60.317 60.000 0.00 0.00 42.29 4.70
37 38 1.028905 GAGATCTGTACGCAGCCTCT 58.971 55.000 0.00 0.00 42.29 3.69
38 39 1.407258 GAGATCTGTACGCAGCCTCTT 59.593 52.381 0.00 0.00 42.29 2.85
39 40 1.827969 AGATCTGTACGCAGCCTCTTT 59.172 47.619 0.00 0.00 42.29 2.52
40 41 2.234908 AGATCTGTACGCAGCCTCTTTT 59.765 45.455 0.00 0.00 42.29 2.27
41 42 2.543777 TCTGTACGCAGCCTCTTTTT 57.456 45.000 0.00 0.00 42.29 1.94
64 65 5.880054 TTTTAGAGCTTGATTACACAGCC 57.120 39.130 0.00 0.00 33.79 4.85
65 66 4.826274 TTAGAGCTTGATTACACAGCCT 57.174 40.909 0.00 0.00 33.79 4.58
66 67 3.258971 AGAGCTTGATTACACAGCCTC 57.741 47.619 0.00 0.00 33.79 4.70
67 68 2.836981 AGAGCTTGATTACACAGCCTCT 59.163 45.455 0.00 0.00 33.79 3.69
68 69 4.026744 AGAGCTTGATTACACAGCCTCTA 58.973 43.478 0.00 0.00 33.79 2.43
69 70 4.653341 AGAGCTTGATTACACAGCCTCTAT 59.347 41.667 0.00 0.00 33.79 1.98
70 71 5.130145 AGAGCTTGATTACACAGCCTCTATT 59.870 40.000 0.00 0.00 33.79 1.73
71 72 5.749462 AGCTTGATTACACAGCCTCTATTT 58.251 37.500 0.00 0.00 33.79 1.40
72 73 6.183347 AGCTTGATTACACAGCCTCTATTTT 58.817 36.000 0.00 0.00 33.79 1.82
73 74 7.338710 AGCTTGATTACACAGCCTCTATTTTA 58.661 34.615 0.00 0.00 33.79 1.52
165 166 2.174854 GGTTTATAGTCTGGGCCCATGT 59.825 50.000 28.82 15.60 0.00 3.21
183 184 1.203313 TGTCCCAGAGAACCTAAGCCT 60.203 52.381 0.00 0.00 0.00 4.58
190 191 1.139256 GAGAACCTAAGCCTAGCCCAC 59.861 57.143 0.00 0.00 0.00 4.61
228 230 1.368579 CAACCCAGCCTGCCAAAAG 59.631 57.895 0.00 0.00 0.00 2.27
229 231 1.075301 AACCCAGCCTGCCAAAAGT 60.075 52.632 0.00 0.00 0.00 2.66
230 232 1.115326 AACCCAGCCTGCCAAAAGTC 61.115 55.000 0.00 0.00 0.00 3.01
231 233 1.228675 CCCAGCCTGCCAAAAGTCT 60.229 57.895 0.00 0.00 0.00 3.24
270 273 0.329596 CCAAGCAAACCCTAGCCTCT 59.670 55.000 0.00 0.00 0.00 3.69
403 406 2.436824 GCTCCAAGCCTCCGTTCC 60.437 66.667 0.00 0.00 34.48 3.62
471 474 5.673818 GCAAGTTAACCGACCTGATTGATTC 60.674 44.000 0.88 0.00 0.00 2.52
530 533 2.582226 CAGCAATCTCGCCGCGTA 60.582 61.111 13.39 2.70 0.00 4.42
674 680 4.925646 GCATCTCACAATTTTTCCCAGTTC 59.074 41.667 0.00 0.00 0.00 3.01
728 734 0.378610 TCTCTGCTCATACACGCGAG 59.621 55.000 15.93 7.88 0.00 5.03
803 810 7.113437 TCTTTATGGGGTTTGATTCGTTCATA 58.887 34.615 0.00 0.00 33.34 2.15
846 854 9.607285 CATTGTTTACCTTATTGTTAGTGTGTC 57.393 33.333 0.00 0.00 0.00 3.67
1169 1207 2.225242 ACATCAGGGAGACAGTGACTCT 60.225 50.000 19.61 2.85 35.10 3.24
1301 1339 2.033550 ACAAGACAGTGACGACTCTGAC 59.966 50.000 20.63 15.25 39.18 3.51
1580 1618 3.713615 GATGAGCAGCAGCAACGCG 62.714 63.158 3.53 3.53 45.49 6.01
1727 1765 4.618920 TGATGATGATGATGAGAGTGGG 57.381 45.455 0.00 0.00 0.00 4.61
1968 2009 0.178068 AGTTGAACGTGTGGAGCAGT 59.822 50.000 0.00 0.00 0.00 4.40
2270 2311 3.193691 TGGAGAGAATTGACTCGGAGTTC 59.806 47.826 12.67 5.80 41.25 3.01
2288 2329 5.297029 GGAGTTCTTTAAGAGTTTGCAGTGT 59.703 40.000 0.00 0.00 0.00 3.55
2726 2767 9.649167 CACATATATCACTATGCAATCTCTGAA 57.351 33.333 0.00 0.00 33.26 3.02
2744 2785 3.888934 TGAAGAATTTTCAGTTGCTCGC 58.111 40.909 0.00 0.00 0.00 5.03
2750 2791 2.143008 TTTCAGTTGCTCGCGACTTA 57.857 45.000 3.71 0.00 38.53 2.24
2909 2950 4.063689 CTGAGCTATATGCAACTGGAAGG 58.936 47.826 0.00 0.00 45.94 3.46
3030 3091 2.571653 ACACATGGCAGCTAGTTTCCTA 59.428 45.455 0.00 0.00 0.00 2.94
3156 3217 0.994247 TTGACACATGCTCAGGGGAT 59.006 50.000 0.00 0.00 0.00 3.85
3170 3232 2.036256 GGATGGTGCTGCCCAGTT 59.964 61.111 13.84 0.68 38.07 3.16
3179 3241 1.209504 TGCTGCCCAGTTGTAGGATAC 59.790 52.381 0.00 0.00 43.42 2.24
3185 3247 3.867493 GCCCAGTTGTAGGATACGTTAAC 59.133 47.826 0.00 0.00 46.99 2.01
3210 3272 8.966868 ACTTGTTTATATTGTGTTATTGAGGGG 58.033 33.333 0.00 0.00 0.00 4.79
3229 3291 3.384467 GGGGTAGGCTGTATTGTTACGTA 59.616 47.826 0.00 0.00 0.00 3.57
3230 3292 4.039609 GGGGTAGGCTGTATTGTTACGTAT 59.960 45.833 0.00 0.00 0.00 3.06
3311 3373 1.900486 ACCTGAGCCTTACTGGTACAC 59.100 52.381 0.00 0.00 37.71 2.90
3364 3426 3.690139 CAGATACGACTACACTGTCTGGT 59.310 47.826 0.00 0.00 35.00 4.00
3365 3427 3.690139 AGATACGACTACACTGTCTGGTG 59.310 47.826 0.00 0.00 42.34 4.17
3367 3429 1.607628 ACGACTACACTGTCTGGTGTC 59.392 52.381 3.48 0.00 45.94 3.67
3368 3430 1.607148 CGACTACACTGTCTGGTGTCA 59.393 52.381 3.48 0.00 45.94 3.58
3416 3512 9.765795 ACTGTTAGTCATAATTGTATCTTAGCC 57.234 33.333 0.00 0.00 0.00 3.93
3472 3568 8.470805 GTCTAATAGAAGAACCTGTCATTCTGA 58.529 37.037 0.00 0.00 36.52 3.27
3526 3638 7.713764 AGGTGTGAAATTTCAAATGCTTAAC 57.286 32.000 22.07 7.47 39.21 2.01
3668 3788 2.352421 CCAGAATTGACTTGCAGGCTTG 60.352 50.000 0.00 0.00 0.00 4.01
3674 3794 0.514691 GACTTGCAGGCTTGAACTCG 59.485 55.000 0.00 0.00 0.00 4.18
3689 3809 5.505165 TGAACTCGTCGTTTTAGCAATAC 57.495 39.130 0.00 0.00 35.56 1.89
3844 4005 3.030291 TGAACTTTTGGAAGCCACACAT 58.970 40.909 0.00 0.00 36.29 3.21
4195 4356 2.753029 AGCCTTGACCAGCTCACC 59.247 61.111 0.00 0.00 32.71 4.02
4396 4557 0.459585 GCAACGAGAGGGCGTATGAA 60.460 55.000 0.00 0.00 44.86 2.57
4489 4656 1.972872 AGTGGCAGGAGAACTTTGTG 58.027 50.000 0.00 0.00 0.00 3.33
4537 4704 0.912486 GGAGGTCTGGTTATGCTGGT 59.088 55.000 0.00 0.00 0.00 4.00
4745 4933 9.703892 AGTCTGATAGATTTGAGATAAATTCCG 57.296 33.333 0.00 0.00 0.00 4.30
4794 4982 1.940613 GCACCGTTCAGAACTTGAGTT 59.059 47.619 11.60 0.00 41.64 3.01
4941 5131 9.362151 TCAAGTTACTATTTTCCACATTTCCTT 57.638 29.630 0.00 0.00 0.00 3.36
4975 5165 2.892852 TGTTTTGCCATCTTCTTCCAGG 59.107 45.455 0.00 0.00 0.00 4.45
4990 5180 2.371306 TCCAGGCATGTCATGAATGTG 58.629 47.619 17.24 7.01 0.00 3.21
5039 5235 1.501337 CTGCGAGCTGCTTGTGACAA 61.501 55.000 17.76 0.00 46.63 3.18
5056 5252 2.218603 ACAACGTAGAGCCACAAAAGG 58.781 47.619 0.00 0.00 0.00 3.11
5059 5255 1.002087 ACGTAGAGCCACAAAAGGAGG 59.998 52.381 0.00 0.00 0.00 4.30
5081 5278 6.183347 AGGGGATTTTACTGTTGATCTTCAG 58.817 40.000 13.38 13.38 37.65 3.02
5133 5337 6.598064 GCCCAAGATTACAACAGTACAGTATT 59.402 38.462 0.00 0.00 0.00 1.89
5200 5404 3.181461 CCATTGCTCTTCCAGTACCCTAG 60.181 52.174 0.00 0.00 0.00 3.02
5210 5414 2.607187 CAGTACCCTAGTTGCAGTTCG 58.393 52.381 0.00 0.00 0.00 3.95
5268 5472 7.994425 TTAGTGAAAATGGAAATCAGCTGTA 57.006 32.000 14.67 0.48 0.00 2.74
5277 5481 5.724328 TGGAAATCAGCTGTACACTAGAAG 58.276 41.667 14.67 0.00 0.00 2.85
5280 5484 4.624336 ATCAGCTGTACACTAGAAGTCG 57.376 45.455 14.67 0.00 0.00 4.18
5295 5499 5.028549 AGAAGTCGTAATGATTGCCTGAT 57.971 39.130 0.00 0.00 0.00 2.90
5296 5500 5.053145 AGAAGTCGTAATGATTGCCTGATC 58.947 41.667 0.00 0.00 0.00 2.92
5297 5501 4.406648 AGTCGTAATGATTGCCTGATCA 57.593 40.909 0.00 0.00 40.11 2.92
5298 5502 4.965814 AGTCGTAATGATTGCCTGATCAT 58.034 39.130 0.00 2.50 46.06 2.45
5308 5512 3.909587 CCTGATCATTGGCAGGGAA 57.090 52.632 14.87 0.00 46.24 3.97
5309 5513 2.148446 CCTGATCATTGGCAGGGAAA 57.852 50.000 14.87 0.00 46.24 3.13
5310 5514 2.674420 CCTGATCATTGGCAGGGAAAT 58.326 47.619 14.87 0.00 46.24 2.17
5311 5515 2.626743 CCTGATCATTGGCAGGGAAATC 59.373 50.000 14.87 0.00 46.24 2.17
5312 5516 3.293337 CTGATCATTGGCAGGGAAATCA 58.707 45.455 0.00 0.00 0.00 2.57
5313 5517 3.895656 CTGATCATTGGCAGGGAAATCAT 59.104 43.478 0.00 0.00 0.00 2.45
5314 5518 3.639561 TGATCATTGGCAGGGAAATCATG 59.360 43.478 0.00 0.00 0.00 3.07
5315 5519 3.104519 TCATTGGCAGGGAAATCATGT 57.895 42.857 0.00 0.00 0.00 3.21
5316 5520 4.248174 TCATTGGCAGGGAAATCATGTA 57.752 40.909 0.00 0.00 0.00 2.29
5317 5521 4.806892 TCATTGGCAGGGAAATCATGTAT 58.193 39.130 0.00 0.00 0.00 2.29
5318 5522 4.828939 TCATTGGCAGGGAAATCATGTATC 59.171 41.667 0.00 0.00 0.00 2.24
5319 5523 3.228188 TGGCAGGGAAATCATGTATCC 57.772 47.619 0.00 0.00 0.00 2.59
5328 5532 5.066593 GGAAATCATGTATCCCTCTGTTCC 58.933 45.833 0.00 0.00 0.00 3.62
5329 5533 5.163152 GGAAATCATGTATCCCTCTGTTCCT 60.163 44.000 0.00 0.00 0.00 3.36
5330 5534 6.043243 GGAAATCATGTATCCCTCTGTTCCTA 59.957 42.308 0.00 0.00 0.00 2.94
5331 5535 7.420214 GGAAATCATGTATCCCTCTGTTCCTAA 60.420 40.741 0.00 0.00 0.00 2.69
5332 5536 7.451731 AATCATGTATCCCTCTGTTCCTAAA 57.548 36.000 0.00 0.00 0.00 1.85
5333 5537 7.639062 ATCATGTATCCCTCTGTTCCTAAAT 57.361 36.000 0.00 0.00 0.00 1.40
5334 5538 8.742125 ATCATGTATCCCTCTGTTCCTAAATA 57.258 34.615 0.00 0.00 0.00 1.40
5335 5539 8.742125 TCATGTATCCCTCTGTTCCTAAATAT 57.258 34.615 0.00 0.00 0.00 1.28
5336 5540 9.837681 TCATGTATCCCTCTGTTCCTAAATATA 57.162 33.333 0.00 0.00 0.00 0.86
5339 5543 9.670442 TGTATCCCTCTGTTCCTAAATATAAGT 57.330 33.333 0.00 0.00 0.00 2.24
5342 5546 8.855804 TCCCTCTGTTCCTAAATATAAGTCTT 57.144 34.615 0.00 0.00 0.00 3.01
5343 5547 9.280456 TCCCTCTGTTCCTAAATATAAGTCTTT 57.720 33.333 0.00 0.00 0.00 2.52
5344 5548 9.331282 CCCTCTGTTCCTAAATATAAGTCTTTG 57.669 37.037 0.00 0.00 0.00 2.77
5345 5549 9.892130 CCTCTGTTCCTAAATATAAGTCTTTGT 57.108 33.333 0.00 0.00 0.00 2.83
5367 5571 9.967451 TTTGTAAAGATTCTATTATGGACCACA 57.033 29.630 0.00 0.00 0.00 4.17
5372 5576 9.784531 AAAGATTCTATTATGGACCACATACAG 57.215 33.333 0.00 0.00 41.61 2.74
5373 5577 8.727100 AGATTCTATTATGGACCACATACAGA 57.273 34.615 0.00 0.00 41.61 3.41
5374 5578 9.331466 AGATTCTATTATGGACCACATACAGAT 57.669 33.333 0.00 0.00 41.61 2.90
5375 5579 9.376075 GATTCTATTATGGACCACATACAGATG 57.624 37.037 0.00 0.00 41.61 2.90
5377 5581 8.950007 TCTATTATGGACCACATACAGATGTA 57.050 34.615 0.00 0.00 44.82 2.29
5378 5582 9.547279 TCTATTATGGACCACATACAGATGTAT 57.453 33.333 0.00 0.00 44.82 2.29
5384 5588 9.720874 ATGGACCACATACAGATGTATATAGAT 57.279 33.333 0.00 0.00 44.82 1.98
5385 5589 8.971073 TGGACCACATACAGATGTATATAGATG 58.029 37.037 5.21 0.00 44.82 2.90
5386 5590 7.923344 GGACCACATACAGATGTATATAGATGC 59.077 40.741 5.21 0.00 44.82 3.91
5387 5591 8.366359 ACCACATACAGATGTATATAGATGCA 57.634 34.615 5.21 0.00 44.82 3.96
5388 5592 8.985922 ACCACATACAGATGTATATAGATGCAT 58.014 33.333 0.00 0.00 44.82 3.96
5389 5593 9.828039 CCACATACAGATGTATATAGATGCATT 57.172 33.333 0.00 0.00 44.82 3.56
5417 5621 8.885494 AGAGTATAGATTCACTCATTTTGCTC 57.115 34.615 4.70 0.00 42.99 4.26
5418 5622 7.930865 AGAGTATAGATTCACTCATTTTGCTCC 59.069 37.037 4.70 0.00 42.99 4.70
5419 5623 5.998454 ATAGATTCACTCATTTTGCTCCG 57.002 39.130 0.00 0.00 0.00 4.63
5420 5624 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
5421 5625 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
5422 5626 4.631813 AGATTCACTCATTTTGCTCCGTAC 59.368 41.667 0.00 0.00 0.00 3.67
5423 5627 2.333926 TCACTCATTTTGCTCCGTACG 58.666 47.619 8.69 8.69 0.00 3.67
5424 5628 2.066262 CACTCATTTTGCTCCGTACGT 58.934 47.619 15.21 0.00 0.00 3.57
5425 5629 2.066262 ACTCATTTTGCTCCGTACGTG 58.934 47.619 15.21 7.80 0.00 4.49
5426 5630 1.393539 CTCATTTTGCTCCGTACGTGG 59.606 52.381 15.21 7.41 0.00 4.94
5427 5631 1.153353 CATTTTGCTCCGTACGTGGT 58.847 50.000 15.21 0.00 0.00 4.16
5428 5632 1.533731 CATTTTGCTCCGTACGTGGTT 59.466 47.619 15.21 0.00 0.00 3.67
5429 5633 1.666054 TTTTGCTCCGTACGTGGTTT 58.334 45.000 15.21 0.00 0.00 3.27
5430 5634 2.522836 TTTGCTCCGTACGTGGTTTA 57.477 45.000 15.21 0.00 0.00 2.01
5431 5635 2.747396 TTGCTCCGTACGTGGTTTAT 57.253 45.000 15.21 0.00 0.00 1.40
5432 5636 3.865011 TTGCTCCGTACGTGGTTTATA 57.135 42.857 15.21 0.00 0.00 0.98
5433 5637 3.425577 TGCTCCGTACGTGGTTTATAG 57.574 47.619 15.21 0.00 0.00 1.31
5434 5638 2.754552 TGCTCCGTACGTGGTTTATAGT 59.245 45.455 15.21 0.00 0.00 2.12
5435 5639 3.111098 GCTCCGTACGTGGTTTATAGTG 58.889 50.000 15.21 0.00 0.00 2.74
5436 5640 3.699067 CTCCGTACGTGGTTTATAGTGG 58.301 50.000 15.21 0.00 0.00 4.00
5437 5641 3.351740 TCCGTACGTGGTTTATAGTGGA 58.648 45.455 15.21 0.00 0.00 4.02
5438 5642 3.761218 TCCGTACGTGGTTTATAGTGGAA 59.239 43.478 15.21 0.00 0.00 3.53
5439 5643 4.402155 TCCGTACGTGGTTTATAGTGGAAT 59.598 41.667 15.21 0.00 0.00 3.01
5440 5644 4.741676 CCGTACGTGGTTTATAGTGGAATC 59.258 45.833 15.21 0.00 0.00 2.52
5441 5645 5.450965 CCGTACGTGGTTTATAGTGGAATCT 60.451 44.000 15.21 0.00 0.00 2.40
5442 5646 5.684626 CGTACGTGGTTTATAGTGGAATCTC 59.315 44.000 7.22 0.00 0.00 2.75
5443 5647 5.934402 ACGTGGTTTATAGTGGAATCTCT 57.066 39.130 0.00 0.00 0.00 3.10
5444 5648 6.295719 ACGTGGTTTATAGTGGAATCTCTT 57.704 37.500 0.00 0.00 0.00 2.85
5445 5649 6.338937 ACGTGGTTTATAGTGGAATCTCTTC 58.661 40.000 0.00 0.00 0.00 2.87
5446 5650 6.070995 ACGTGGTTTATAGTGGAATCTCTTCA 60.071 38.462 0.00 0.00 32.70 3.02
5447 5651 6.816640 CGTGGTTTATAGTGGAATCTCTTCAA 59.183 38.462 0.00 0.00 32.70 2.69
5448 5652 7.333423 CGTGGTTTATAGTGGAATCTCTTCAAA 59.667 37.037 0.00 0.00 32.70 2.69
5449 5653 8.669243 GTGGTTTATAGTGGAATCTCTTCAAAG 58.331 37.037 0.00 0.00 32.70 2.77
5450 5654 8.602424 TGGTTTATAGTGGAATCTCTTCAAAGA 58.398 33.333 0.00 0.00 32.70 2.52
5451 5655 9.620259 GGTTTATAGTGGAATCTCTTCAAAGAT 57.380 33.333 0.00 0.00 37.61 2.40
5470 5674 9.555727 TCAAAGATTTATATTTAGGAACGGAGG 57.444 33.333 0.00 0.00 0.00 4.30
5471 5675 8.784043 CAAAGATTTATATTTAGGAACGGAGGG 58.216 37.037 0.00 0.00 0.00 4.30
5472 5676 7.867160 AGATTTATATTTAGGAACGGAGGGA 57.133 36.000 0.00 0.00 0.00 4.20
5473 5677 7.908453 AGATTTATATTTAGGAACGGAGGGAG 58.092 38.462 0.00 0.00 0.00 4.30
5474 5678 7.513091 AGATTTATATTTAGGAACGGAGGGAGT 59.487 37.037 0.00 0.00 0.00 3.85
5475 5679 8.731591 ATTTATATTTAGGAACGGAGGGAGTA 57.268 34.615 0.00 0.00 0.00 2.59
5476 5680 7.530426 TTATATTTAGGAACGGAGGGAGTAC 57.470 40.000 0.00 0.00 0.00 2.73
5477 5681 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
5478 5682 3.463048 TTAGGAACGGAGGGAGTACTT 57.537 47.619 0.00 0.00 0.00 2.24
5479 5683 2.322339 AGGAACGGAGGGAGTACTTT 57.678 50.000 0.00 0.00 0.00 2.66
5480 5684 1.900486 AGGAACGGAGGGAGTACTTTG 59.100 52.381 0.00 0.00 0.00 2.77
5481 5685 1.622312 GGAACGGAGGGAGTACTTTGT 59.378 52.381 0.00 0.00 0.00 2.83
5482 5686 2.827921 GGAACGGAGGGAGTACTTTGTA 59.172 50.000 0.00 0.00 0.00 2.41
5483 5687 3.259123 GGAACGGAGGGAGTACTTTGTAA 59.741 47.826 0.00 0.00 0.00 2.41
5484 5688 4.081254 GGAACGGAGGGAGTACTTTGTAAT 60.081 45.833 0.00 0.00 0.00 1.89
5485 5689 5.485620 GAACGGAGGGAGTACTTTGTAATT 58.514 41.667 0.00 0.00 0.00 1.40
5486 5690 6.351286 GGAACGGAGGGAGTACTTTGTAATTA 60.351 42.308 0.00 0.00 0.00 1.40
5487 5691 6.218108 ACGGAGGGAGTACTTTGTAATTAG 57.782 41.667 0.00 0.00 0.00 1.73
5488 5692 5.048507 CGGAGGGAGTACTTTGTAATTAGC 58.951 45.833 0.00 0.00 0.00 3.09
5489 5693 5.394883 CGGAGGGAGTACTTTGTAATTAGCA 60.395 44.000 0.00 0.00 0.00 3.49
5490 5694 6.592870 GGAGGGAGTACTTTGTAATTAGCAT 58.407 40.000 0.00 0.00 0.00 3.79
5491 5695 6.483640 GGAGGGAGTACTTTGTAATTAGCATG 59.516 42.308 0.00 0.00 0.00 4.06
5492 5696 7.195374 AGGGAGTACTTTGTAATTAGCATGA 57.805 36.000 0.00 0.00 0.00 3.07
5493 5697 7.806180 AGGGAGTACTTTGTAATTAGCATGAT 58.194 34.615 0.00 0.00 0.00 2.45
5494 5698 7.716998 AGGGAGTACTTTGTAATTAGCATGATG 59.283 37.037 0.00 0.00 0.00 3.07
5495 5699 7.355778 GGAGTACTTTGTAATTAGCATGATGC 58.644 38.462 9.89 9.89 45.46 3.91
5496 5700 7.264373 AGTACTTTGTAATTAGCATGATGCC 57.736 36.000 14.72 0.00 46.52 4.40
5497 5701 5.520376 ACTTTGTAATTAGCATGATGCCC 57.480 39.130 14.72 0.00 46.52 5.36
5498 5702 4.036734 ACTTTGTAATTAGCATGATGCCCG 59.963 41.667 14.72 0.00 46.52 6.13
5499 5703 3.207265 TGTAATTAGCATGATGCCCGT 57.793 42.857 14.72 0.00 46.52 5.28
5500 5704 2.877786 TGTAATTAGCATGATGCCCGTG 59.122 45.455 14.72 0.00 46.52 4.94
5505 5709 2.512286 CATGATGCCCGTGCTCGT 60.512 61.111 7.47 0.00 38.71 4.18
5506 5710 2.108514 CATGATGCCCGTGCTCGTT 61.109 57.895 7.47 0.00 38.71 3.85
5507 5711 2.108514 ATGATGCCCGTGCTCGTTG 61.109 57.895 7.47 0.00 38.71 4.10
5508 5712 4.166011 GATGCCCGTGCTCGTTGC 62.166 66.667 7.47 9.81 43.25 4.17
5509 5713 4.704833 ATGCCCGTGCTCGTTGCT 62.705 61.111 17.07 4.61 43.37 3.91
5510 5714 3.309436 ATGCCCGTGCTCGTTGCTA 62.309 57.895 17.07 7.57 43.37 3.49
5511 5715 2.740826 GCCCGTGCTCGTTGCTAA 60.741 61.111 7.47 0.00 43.37 3.09
5512 5716 2.740714 GCCCGTGCTCGTTGCTAAG 61.741 63.158 7.47 0.00 43.37 2.18
5513 5717 1.080093 CCCGTGCTCGTTGCTAAGA 60.080 57.895 7.47 0.00 43.37 2.10
5514 5718 0.669318 CCCGTGCTCGTTGCTAAGAA 60.669 55.000 7.47 0.00 43.37 2.52
5515 5719 0.716108 CCGTGCTCGTTGCTAAGAAG 59.284 55.000 7.47 0.00 43.37 2.85
5516 5720 3.166248 CCGTGCTCGTTGCTAAGAAGC 62.166 57.143 7.47 0.00 43.37 3.86
5520 5724 7.937762 CCGTGCTCGTTGCTAAGAAGCTATA 62.938 48.000 7.47 0.00 41.47 1.31
5530 5734 6.839820 GCTAAGAAGCTATAAACGGCTTAA 57.160 37.500 0.00 0.00 46.91 1.85
5531 5735 6.878908 GCTAAGAAGCTATAAACGGCTTAAG 58.121 40.000 0.00 0.00 46.91 1.85
5532 5736 6.700520 GCTAAGAAGCTATAAACGGCTTAAGA 59.299 38.462 6.67 0.00 46.91 2.10
5533 5737 7.095982 GCTAAGAAGCTATAAACGGCTTAAGAG 60.096 40.741 6.67 1.54 46.91 2.85
5534 5738 5.051153 AGAAGCTATAAACGGCTTAAGAGC 58.949 41.667 6.67 3.51 46.91 4.09
5564 5768 7.856145 TTTTAGTTAGAGTCTACTACCTCCG 57.144 40.000 0.00 0.00 0.00 4.63
5565 5769 6.552445 TTAGTTAGAGTCTACTACCTCCGT 57.448 41.667 0.00 0.00 0.00 4.69
5566 5770 5.022282 AGTTAGAGTCTACTACCTCCGTC 57.978 47.826 0.00 0.00 0.00 4.79
5567 5771 4.126437 GTTAGAGTCTACTACCTCCGTCC 58.874 52.174 0.00 0.00 0.00 4.79
5568 5772 1.138661 AGAGTCTACTACCTCCGTCCG 59.861 57.143 0.00 0.00 0.00 4.79
5569 5773 0.179936 AGTCTACTACCTCCGTCCGG 59.820 60.000 0.00 0.00 0.00 5.14
5570 5774 0.817229 GTCTACTACCTCCGTCCGGG 60.817 65.000 0.00 0.00 35.59 5.73
5571 5775 1.225704 CTACTACCTCCGTCCGGGT 59.774 63.158 0.00 0.00 39.40 5.28
5572 5776 0.394899 CTACTACCTCCGTCCGGGTT 60.395 60.000 0.00 0.00 37.07 4.11
5573 5777 0.039618 TACTACCTCCGTCCGGGTTT 59.960 55.000 0.00 0.00 37.07 3.27
5574 5778 0.039618 ACTACCTCCGTCCGGGTTTA 59.960 55.000 0.00 0.00 37.07 2.01
5575 5779 1.342374 ACTACCTCCGTCCGGGTTTAT 60.342 52.381 0.00 0.00 37.07 1.40
5576 5780 1.758862 CTACCTCCGTCCGGGTTTATT 59.241 52.381 0.00 0.00 37.07 1.40
5577 5781 1.864669 ACCTCCGTCCGGGTTTATTA 58.135 50.000 0.00 0.00 37.00 0.98
5578 5782 1.758862 ACCTCCGTCCGGGTTTATTAG 59.241 52.381 0.00 0.00 37.00 1.73
5579 5783 1.069668 CCTCCGTCCGGGTTTATTAGG 59.930 57.143 0.00 0.00 37.00 2.69
5580 5784 0.465287 TCCGTCCGGGTTTATTAGGC 59.535 55.000 0.00 0.00 37.00 3.93
5581 5785 0.466963 CCGTCCGGGTTTATTAGGCT 59.533 55.000 0.00 0.00 0.00 4.58
5582 5786 1.688197 CCGTCCGGGTTTATTAGGCTA 59.312 52.381 0.00 0.00 0.00 3.93
5583 5787 2.102925 CCGTCCGGGTTTATTAGGCTAA 59.897 50.000 9.79 9.79 0.00 3.09
5584 5788 3.432046 CCGTCCGGGTTTATTAGGCTAAA 60.432 47.826 11.59 0.00 0.00 1.85
5585 5789 4.190772 CGTCCGGGTTTATTAGGCTAAAA 58.809 43.478 11.59 4.62 0.00 1.52
5586 5790 4.635324 CGTCCGGGTTTATTAGGCTAAAAA 59.365 41.667 11.59 10.09 0.00 1.94
5587 5791 5.447683 CGTCCGGGTTTATTAGGCTAAAAAC 60.448 44.000 22.72 22.72 0.00 2.43
5588 5792 5.415389 GTCCGGGTTTATTAGGCTAAAAACA 59.585 40.000 27.05 15.41 34.30 2.83
5589 5793 6.008960 TCCGGGTTTATTAGGCTAAAAACAA 58.991 36.000 27.05 13.98 34.30 2.83
5590 5794 6.072008 TCCGGGTTTATTAGGCTAAAAACAAC 60.072 38.462 27.05 21.85 34.30 3.32
5591 5795 6.071784 CCGGGTTTATTAGGCTAAAAACAACT 60.072 38.462 27.05 11.21 34.30 3.16
5592 5796 7.372714 CGGGTTTATTAGGCTAAAAACAACTT 58.627 34.615 27.05 10.69 34.30 2.66
5593 5797 7.539710 CGGGTTTATTAGGCTAAAAACAACTTC 59.460 37.037 27.05 17.73 34.30 3.01
5594 5798 8.582437 GGGTTTATTAGGCTAAAAACAACTTCT 58.418 33.333 27.05 9.65 34.30 2.85
5595 5799 9.622004 GGTTTATTAGGCTAAAAACAACTTCTC 57.378 33.333 27.05 15.31 34.30 2.87
5601 5805 7.731882 AGGCTAAAAACAACTTCTCTTAGAC 57.268 36.000 0.00 0.00 0.00 2.59
5602 5806 6.711194 AGGCTAAAAACAACTTCTCTTAGACC 59.289 38.462 0.00 0.00 0.00 3.85
5603 5807 6.485648 GGCTAAAAACAACTTCTCTTAGACCA 59.514 38.462 0.00 0.00 0.00 4.02
5604 5808 7.012989 GGCTAAAAACAACTTCTCTTAGACCAA 59.987 37.037 0.00 0.00 0.00 3.67
5605 5809 8.070769 GCTAAAAACAACTTCTCTTAGACCAAG 58.929 37.037 0.00 0.00 35.38 3.61
5606 5810 9.326413 CTAAAAACAACTTCTCTTAGACCAAGA 57.674 33.333 3.85 0.00 41.10 3.02
5607 5811 7.555306 AAAACAACTTCTCTTAGACCAAGAC 57.445 36.000 3.85 0.00 38.39 3.01
5608 5812 5.871396 ACAACTTCTCTTAGACCAAGACA 57.129 39.130 3.85 0.00 38.39 3.41
5609 5813 5.602628 ACAACTTCTCTTAGACCAAGACAC 58.397 41.667 3.85 0.00 38.39 3.67
5610 5814 5.128827 ACAACTTCTCTTAGACCAAGACACA 59.871 40.000 3.85 0.00 38.39 3.72
5611 5815 6.183361 ACAACTTCTCTTAGACCAAGACACAT 60.183 38.462 3.85 0.00 38.39 3.21
5612 5816 7.015292 ACAACTTCTCTTAGACCAAGACACATA 59.985 37.037 3.85 0.00 38.39 2.29
5613 5817 7.164230 ACTTCTCTTAGACCAAGACACATAG 57.836 40.000 3.85 0.00 38.39 2.23
5614 5818 6.722129 ACTTCTCTTAGACCAAGACACATAGT 59.278 38.462 3.85 0.00 38.39 2.12
5615 5819 7.889073 ACTTCTCTTAGACCAAGACACATAGTA 59.111 37.037 3.85 0.00 38.39 1.82
5616 5820 8.645814 TTCTCTTAGACCAAGACACATAGTAA 57.354 34.615 0.00 0.00 38.39 2.24
5617 5821 8.824756 TCTCTTAGACCAAGACACATAGTAAT 57.175 34.615 0.00 0.00 38.39 1.89
5618 5822 9.256228 TCTCTTAGACCAAGACACATAGTAATT 57.744 33.333 0.00 0.00 38.39 1.40
5619 5823 9.877178 CTCTTAGACCAAGACACATAGTAATTT 57.123 33.333 0.00 0.00 38.39 1.82
5620 5824 9.653287 TCTTAGACCAAGACACATAGTAATTTG 57.347 33.333 0.00 0.00 38.39 2.32
5621 5825 6.743575 AGACCAAGACACATAGTAATTTGC 57.256 37.500 0.00 0.00 0.00 3.68
5622 5826 6.476378 AGACCAAGACACATAGTAATTTGCT 58.524 36.000 0.00 0.00 0.00 3.91
5623 5827 6.595716 AGACCAAGACACATAGTAATTTGCTC 59.404 38.462 0.00 0.00 0.00 4.26
5624 5828 5.351465 ACCAAGACACATAGTAATTTGCTCG 59.649 40.000 0.00 0.00 0.00 5.03
5625 5829 5.258622 CAAGACACATAGTAATTTGCTCGC 58.741 41.667 0.00 0.00 0.00 5.03
5626 5830 4.503910 AGACACATAGTAATTTGCTCGCA 58.496 39.130 0.00 0.00 0.00 5.10
5627 5831 5.118990 AGACACATAGTAATTTGCTCGCAT 58.881 37.500 0.00 0.00 0.00 4.73
5628 5832 5.586243 AGACACATAGTAATTTGCTCGCATT 59.414 36.000 0.00 0.00 0.00 3.56
5629 5833 6.761242 AGACACATAGTAATTTGCTCGCATTA 59.239 34.615 0.00 0.00 0.00 1.90
5630 5834 7.279981 AGACACATAGTAATTTGCTCGCATTAA 59.720 33.333 0.00 0.00 0.00 1.40
5631 5835 7.930217 ACACATAGTAATTTGCTCGCATTAAT 58.070 30.769 0.00 0.00 0.00 1.40
5632 5836 8.405531 ACACATAGTAATTTGCTCGCATTAATT 58.594 29.630 6.74 6.74 0.00 1.40
5633 5837 8.895845 CACATAGTAATTTGCTCGCATTAATTC 58.104 33.333 5.18 0.40 0.00 2.17
5634 5838 8.840321 ACATAGTAATTTGCTCGCATTAATTCT 58.160 29.630 5.18 5.92 0.00 2.40
5635 5839 9.669353 CATAGTAATTTGCTCGCATTAATTCTT 57.331 29.630 5.18 0.32 0.00 2.52
5636 5840 9.884465 ATAGTAATTTGCTCGCATTAATTCTTC 57.116 29.630 5.18 0.61 0.00 2.87
5637 5841 7.196331 AGTAATTTGCTCGCATTAATTCTTCC 58.804 34.615 5.18 0.00 0.00 3.46
5638 5842 5.581126 ATTTGCTCGCATTAATTCTTCCA 57.419 34.783 0.00 0.00 0.00 3.53
5639 5843 5.581126 TTTGCTCGCATTAATTCTTCCAT 57.419 34.783 0.00 0.00 0.00 3.41
5640 5844 5.581126 TTGCTCGCATTAATTCTTCCATT 57.419 34.783 0.00 0.00 0.00 3.16
5641 5845 5.173774 TGCTCGCATTAATTCTTCCATTC 57.826 39.130 0.00 0.00 0.00 2.67
5642 5846 4.036734 TGCTCGCATTAATTCTTCCATTCC 59.963 41.667 0.00 0.00 0.00 3.01
5643 5847 4.036734 GCTCGCATTAATTCTTCCATTCCA 59.963 41.667 0.00 0.00 0.00 3.53
5644 5848 5.278660 GCTCGCATTAATTCTTCCATTCCAT 60.279 40.000 0.00 0.00 0.00 3.41
5645 5849 6.713762 TCGCATTAATTCTTCCATTCCATT 57.286 33.333 0.00 0.00 0.00 3.16
5646 5850 6.738114 TCGCATTAATTCTTCCATTCCATTC 58.262 36.000 0.00 0.00 0.00 2.67
5647 5851 5.922544 CGCATTAATTCTTCCATTCCATTCC 59.077 40.000 0.00 0.00 0.00 3.01
5648 5852 6.226052 GCATTAATTCTTCCATTCCATTCCC 58.774 40.000 0.00 0.00 0.00 3.97
5649 5853 6.183360 GCATTAATTCTTCCATTCCATTCCCA 60.183 38.462 0.00 0.00 0.00 4.37
5650 5854 7.635529 GCATTAATTCTTCCATTCCATTCCCAA 60.636 37.037 0.00 0.00 0.00 4.12
5651 5855 7.993349 TTAATTCTTCCATTCCATTCCCAAT 57.007 32.000 0.00 0.00 0.00 3.16
5652 5856 5.881923 ATTCTTCCATTCCATTCCCAATG 57.118 39.130 0.00 0.00 38.63 2.82
5653 5857 3.033184 TCTTCCATTCCATTCCCAATGC 58.967 45.455 0.00 0.00 37.57 3.56
5654 5858 2.546652 TCCATTCCATTCCCAATGCA 57.453 45.000 0.00 0.00 37.57 3.96
5655 5859 2.109774 TCCATTCCATTCCCAATGCAC 58.890 47.619 0.00 0.00 37.57 4.57
5656 5860 2.112998 CCATTCCATTCCCAATGCACT 58.887 47.619 0.00 0.00 37.57 4.40
5657 5861 2.101917 CCATTCCATTCCCAATGCACTC 59.898 50.000 0.00 0.00 37.57 3.51
5658 5862 2.905415 TTCCATTCCCAATGCACTCT 57.095 45.000 0.00 0.00 37.57 3.24
5659 5863 2.425143 TCCATTCCCAATGCACTCTC 57.575 50.000 0.00 0.00 37.57 3.20
5660 5864 1.918262 TCCATTCCCAATGCACTCTCT 59.082 47.619 0.00 0.00 37.57 3.10
5661 5865 2.092753 TCCATTCCCAATGCACTCTCTC 60.093 50.000 0.00 0.00 37.57 3.20
5662 5866 2.356432 CCATTCCCAATGCACTCTCTCA 60.356 50.000 0.00 0.00 37.57 3.27
5663 5867 3.552875 CATTCCCAATGCACTCTCTCAT 58.447 45.455 0.00 0.00 31.20 2.90
5664 5868 4.445305 CCATTCCCAATGCACTCTCTCATA 60.445 45.833 0.00 0.00 37.57 2.15
5665 5869 5.314529 CATTCCCAATGCACTCTCTCATAT 58.685 41.667 0.00 0.00 31.20 1.78
5666 5870 4.347360 TCCCAATGCACTCTCTCATATG 57.653 45.455 0.00 0.00 0.00 1.78
5667 5871 2.812591 CCCAATGCACTCTCTCATATGC 59.187 50.000 0.00 0.00 38.59 3.14
5671 5875 2.490991 TGCACTCTCTCATATGCATGC 58.509 47.619 11.82 11.82 42.92 4.06
5672 5876 2.158871 TGCACTCTCTCATATGCATGCA 60.159 45.455 25.04 25.04 42.92 3.96
5673 5877 2.876550 GCACTCTCTCATATGCATGCAA 59.123 45.455 26.68 14.46 38.00 4.08
5674 5878 3.303857 GCACTCTCTCATATGCATGCAAC 60.304 47.826 26.68 0.00 38.00 4.17
5675 5879 3.250280 CACTCTCTCATATGCATGCAACC 59.750 47.826 26.68 0.00 31.73 3.77
5676 5880 3.118149 ACTCTCTCATATGCATGCAACCA 60.118 43.478 26.68 13.44 31.73 3.67
5677 5881 3.881089 CTCTCTCATATGCATGCAACCAA 59.119 43.478 26.68 11.10 31.73 3.67
5678 5882 4.466827 TCTCTCATATGCATGCAACCAAT 58.533 39.130 26.68 10.51 31.73 3.16
5679 5883 4.277423 TCTCTCATATGCATGCAACCAATG 59.723 41.667 26.68 22.90 31.73 2.82
5680 5884 4.208746 TCTCATATGCATGCAACCAATGA 58.791 39.130 26.68 25.30 31.73 2.57
5681 5885 4.645588 TCTCATATGCATGCAACCAATGAA 59.354 37.500 26.68 16.37 31.73 2.57
5682 5886 5.127356 TCTCATATGCATGCAACCAATGAAA 59.873 36.000 26.68 14.70 31.73 2.69
5683 5887 5.731591 TCATATGCATGCAACCAATGAAAA 58.268 33.333 26.68 7.75 31.73 2.29
5684 5888 6.171213 TCATATGCATGCAACCAATGAAAAA 58.829 32.000 26.68 7.43 31.73 1.94
5685 5889 6.314152 TCATATGCATGCAACCAATGAAAAAG 59.686 34.615 26.68 3.77 31.73 2.27
5686 5890 2.548904 TGCATGCAACCAATGAAAAAGC 59.451 40.909 20.30 0.00 0.00 3.51
5687 5891 2.548904 GCATGCAACCAATGAAAAAGCA 59.451 40.909 14.21 0.00 34.78 3.91
5688 5892 3.607542 GCATGCAACCAATGAAAAAGCAC 60.608 43.478 14.21 0.00 32.92 4.40
5689 5893 2.200067 TGCAACCAATGAAAAAGCACG 58.800 42.857 0.00 0.00 0.00 5.34
5690 5894 1.070643 GCAACCAATGAAAAAGCACGC 60.071 47.619 0.00 0.00 0.00 5.34
5691 5895 2.200067 CAACCAATGAAAAAGCACGCA 58.800 42.857 0.00 0.00 0.00 5.24
5692 5896 2.801679 CAACCAATGAAAAAGCACGCAT 59.198 40.909 0.00 0.00 0.00 4.73
5693 5897 2.406130 ACCAATGAAAAAGCACGCATG 58.594 42.857 0.00 0.00 0.00 4.06
5694 5898 2.035704 ACCAATGAAAAAGCACGCATGA 59.964 40.909 0.00 0.00 0.00 3.07
5695 5899 3.058450 CCAATGAAAAAGCACGCATGAA 58.942 40.909 0.00 0.00 0.00 2.57
5696 5900 3.122278 CCAATGAAAAAGCACGCATGAAG 59.878 43.478 0.00 0.00 0.00 3.02
5697 5901 3.648339 ATGAAAAAGCACGCATGAAGT 57.352 38.095 0.00 0.00 0.00 3.01
5698 5902 2.730069 TGAAAAAGCACGCATGAAGTG 58.270 42.857 14.88 14.88 42.15 3.16
5699 5903 2.098934 TGAAAAAGCACGCATGAAGTGT 59.901 40.909 18.63 7.11 42.97 3.55
5700 5904 3.313803 TGAAAAAGCACGCATGAAGTGTA 59.686 39.130 18.63 1.00 39.40 2.90
5701 5905 4.023279 TGAAAAAGCACGCATGAAGTGTAT 60.023 37.500 18.63 8.80 39.40 2.29
5702 5906 4.503741 AAAAGCACGCATGAAGTGTATT 57.496 36.364 18.63 12.87 39.40 1.89
5703 5907 5.621197 AAAAGCACGCATGAAGTGTATTA 57.379 34.783 18.63 0.00 39.40 0.98
5704 5908 5.621197 AAAGCACGCATGAAGTGTATTAA 57.379 34.783 18.63 0.00 39.40 1.40
5705 5909 5.818136 AAGCACGCATGAAGTGTATTAAT 57.182 34.783 18.63 0.00 39.40 1.40
5706 5910 5.818136 AGCACGCATGAAGTGTATTAATT 57.182 34.783 18.63 0.00 39.40 1.40
5707 5911 6.194796 AGCACGCATGAAGTGTATTAATTT 57.805 33.333 18.63 0.00 39.40 1.82
5708 5912 6.258160 AGCACGCATGAAGTGTATTAATTTC 58.742 36.000 18.63 0.00 39.40 2.17
5709 5913 6.094048 AGCACGCATGAAGTGTATTAATTTCT 59.906 34.615 18.63 5.66 39.40 2.52
5710 5914 6.412072 GCACGCATGAAGTGTATTAATTTCTC 59.588 38.462 18.63 0.00 39.40 2.87
5711 5915 7.463544 CACGCATGAAGTGTATTAATTTCTCA 58.536 34.615 12.00 0.00 39.40 3.27
5712 5916 7.637519 CACGCATGAAGTGTATTAATTTCTCAG 59.362 37.037 12.00 0.00 39.40 3.35
5713 5917 6.630443 CGCATGAAGTGTATTAATTTCTCAGC 59.370 38.462 0.00 0.00 0.00 4.26
5714 5918 6.914757 GCATGAAGTGTATTAATTTCTCAGCC 59.085 38.462 0.00 0.00 0.00 4.85
5715 5919 7.415541 GCATGAAGTGTATTAATTTCTCAGCCA 60.416 37.037 0.00 0.00 0.00 4.75
5716 5920 8.627403 CATGAAGTGTATTAATTTCTCAGCCAT 58.373 33.333 0.00 0.00 0.00 4.40
5717 5921 7.988737 TGAAGTGTATTAATTTCTCAGCCATG 58.011 34.615 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.701098 ACAGATCTCGCGGTTTTATATATTTTA 57.299 29.630 6.13 0.00 0.00 1.52
1 2 8.603242 ACAGATCTCGCGGTTTTATATATTTT 57.397 30.769 6.13 0.00 0.00 1.82
2 3 9.136952 GTACAGATCTCGCGGTTTTATATATTT 57.863 33.333 6.13 0.00 0.00 1.40
3 4 7.484007 CGTACAGATCTCGCGGTTTTATATATT 59.516 37.037 6.13 0.00 0.00 1.28
4 5 6.965500 CGTACAGATCTCGCGGTTTTATATAT 59.035 38.462 6.13 0.00 0.00 0.86
5 6 6.309436 CGTACAGATCTCGCGGTTTTATATA 58.691 40.000 6.13 0.00 0.00 0.86
6 7 5.152097 CGTACAGATCTCGCGGTTTTATAT 58.848 41.667 6.13 0.00 0.00 0.86
7 8 4.530388 CGTACAGATCTCGCGGTTTTATA 58.470 43.478 6.13 0.00 0.00 0.98
8 9 3.369385 CGTACAGATCTCGCGGTTTTAT 58.631 45.455 6.13 0.00 0.00 1.40
9 10 2.789208 CGTACAGATCTCGCGGTTTTA 58.211 47.619 6.13 0.00 0.00 1.52
10 11 1.625616 CGTACAGATCTCGCGGTTTT 58.374 50.000 6.13 0.00 0.00 2.43
11 12 0.801067 GCGTACAGATCTCGCGGTTT 60.801 55.000 6.13 0.00 40.51 3.27
12 13 1.226603 GCGTACAGATCTCGCGGTT 60.227 57.895 6.13 0.00 40.51 4.44
13 14 2.408022 GCGTACAGATCTCGCGGT 59.592 61.111 6.13 0.00 40.51 5.68
41 42 6.003950 AGGCTGTGTAATCAAGCTCTAAAAA 58.996 36.000 0.00 0.00 0.00 1.94
42 43 5.560724 AGGCTGTGTAATCAAGCTCTAAAA 58.439 37.500 0.00 0.00 0.00 1.52
43 44 5.046304 AGAGGCTGTGTAATCAAGCTCTAAA 60.046 40.000 0.00 0.00 0.00 1.85
44 45 4.467795 AGAGGCTGTGTAATCAAGCTCTAA 59.532 41.667 0.00 0.00 0.00 2.10
45 46 4.026744 AGAGGCTGTGTAATCAAGCTCTA 58.973 43.478 0.00 0.00 0.00 2.43
46 47 2.836981 AGAGGCTGTGTAATCAAGCTCT 59.163 45.455 0.00 0.00 0.00 4.09
47 48 3.258971 AGAGGCTGTGTAATCAAGCTC 57.741 47.619 0.00 0.00 0.00 4.09
48 49 5.365021 AATAGAGGCTGTGTAATCAAGCT 57.635 39.130 0.00 0.00 0.00 3.74
49 50 6.442513 AAAATAGAGGCTGTGTAATCAAGC 57.557 37.500 0.00 0.00 0.00 4.01
50 51 8.491152 CGATAAAATAGAGGCTGTGTAATCAAG 58.509 37.037 0.00 0.00 0.00 3.02
51 52 8.201464 TCGATAAAATAGAGGCTGTGTAATCAA 58.799 33.333 0.00 0.00 0.00 2.57
52 53 7.722363 TCGATAAAATAGAGGCTGTGTAATCA 58.278 34.615 0.00 0.00 0.00 2.57
53 54 7.329717 CCTCGATAAAATAGAGGCTGTGTAATC 59.670 40.741 0.00 0.00 43.61 1.75
54 55 7.155328 CCTCGATAAAATAGAGGCTGTGTAAT 58.845 38.462 0.00 0.00 43.61 1.89
55 56 6.462487 CCCTCGATAAAATAGAGGCTGTGTAA 60.462 42.308 9.77 0.00 46.91 2.41
56 57 5.010719 CCCTCGATAAAATAGAGGCTGTGTA 59.989 44.000 9.77 0.00 46.91 2.90
57 58 4.202264 CCCTCGATAAAATAGAGGCTGTGT 60.202 45.833 9.77 0.00 46.91 3.72
58 59 4.310769 CCCTCGATAAAATAGAGGCTGTG 58.689 47.826 9.77 0.00 46.91 3.66
59 60 3.325135 CCCCTCGATAAAATAGAGGCTGT 59.675 47.826 9.77 0.00 46.91 4.40
60 61 3.325135 ACCCCTCGATAAAATAGAGGCTG 59.675 47.826 9.77 6.47 46.91 4.85
61 62 3.588569 ACCCCTCGATAAAATAGAGGCT 58.411 45.455 9.77 0.00 46.91 4.58
62 63 4.282703 TGTACCCCTCGATAAAATAGAGGC 59.717 45.833 9.77 0.00 46.91 4.70
64 65 6.401047 TGTGTACCCCTCGATAAAATAGAG 57.599 41.667 0.00 0.00 0.00 2.43
65 66 5.221382 GCTGTGTACCCCTCGATAAAATAGA 60.221 44.000 0.00 0.00 0.00 1.98
66 67 4.989168 GCTGTGTACCCCTCGATAAAATAG 59.011 45.833 0.00 0.00 0.00 1.73
67 68 4.202284 GGCTGTGTACCCCTCGATAAAATA 60.202 45.833 0.00 0.00 0.00 1.40
68 69 3.433173 GGCTGTGTACCCCTCGATAAAAT 60.433 47.826 0.00 0.00 0.00 1.82
69 70 2.093341 GGCTGTGTACCCCTCGATAAAA 60.093 50.000 0.00 0.00 0.00 1.52
70 71 1.483415 GGCTGTGTACCCCTCGATAAA 59.517 52.381 0.00 0.00 0.00 1.40
71 72 1.117150 GGCTGTGTACCCCTCGATAA 58.883 55.000 0.00 0.00 0.00 1.75
72 73 0.757935 GGGCTGTGTACCCCTCGATA 60.758 60.000 0.00 0.00 42.01 2.92
73 74 2.064581 GGGCTGTGTACCCCTCGAT 61.065 63.158 0.00 0.00 42.01 3.59
103 104 3.431415 ACATAACCCCTGCTTTTTCTCC 58.569 45.455 0.00 0.00 0.00 3.71
142 143 0.108019 GGGCCCAGACTATAAACCCG 59.892 60.000 19.95 0.00 0.00 5.28
165 166 2.955461 GCTAGGCTTAGGTTCTCTGGGA 60.955 54.545 4.88 0.00 0.00 4.37
183 184 0.257616 GCTTGGGGTAATGTGGGCTA 59.742 55.000 0.00 0.00 0.00 3.93
190 191 1.067635 GCTGTTGTGCTTGGGGTAATG 60.068 52.381 0.00 0.00 0.00 1.90
228 230 1.298859 CTTTGGGTGGCACGCTAGAC 61.299 60.000 30.89 8.40 39.78 2.59
229 231 1.003839 CTTTGGGTGGCACGCTAGA 60.004 57.895 30.89 16.63 39.78 2.43
230 232 0.605319 TTCTTTGGGTGGCACGCTAG 60.605 55.000 30.89 25.97 39.78 3.42
231 233 0.037590 ATTCTTTGGGTGGCACGCTA 59.962 50.000 30.89 23.09 39.78 4.26
270 273 0.644380 AGGATGGAGGTGGAGATGGA 59.356 55.000 0.00 0.00 0.00 3.41
403 406 3.160047 AGGCTCAGATCCAGCGGG 61.160 66.667 0.00 0.00 37.81 6.13
471 474 3.838120 TGCAACGACAAGTCTGATAGAG 58.162 45.455 0.00 0.00 0.00 2.43
504 507 1.889573 GAGATTGCTGGTAGGGCGC 60.890 63.158 0.00 0.00 0.00 6.53
505 508 1.592669 CGAGATTGCTGGTAGGGCG 60.593 63.158 0.00 0.00 0.00 6.13
506 509 1.889573 GCGAGATTGCTGGTAGGGC 60.890 63.158 0.00 0.00 0.00 5.19
507 510 1.227674 GGCGAGATTGCTGGTAGGG 60.228 63.158 0.00 0.00 34.52 3.53
529 532 0.981277 GCTGGAACCTAGGCCTGGTA 60.981 60.000 22.37 10.09 36.69 3.25
530 533 2.301738 GCTGGAACCTAGGCCTGGT 61.302 63.158 17.99 18.04 39.91 4.00
674 680 6.399639 ACCCTAAACATAACAAACCAACTG 57.600 37.500 0.00 0.00 0.00 3.16
803 810 4.517285 ACAATGCTTACGGAATGACTCAT 58.483 39.130 0.00 0.00 0.00 2.90
846 854 5.611374 ACTATCCTCGGAACACATAAATGG 58.389 41.667 0.00 0.00 0.00 3.16
1137 1167 4.282195 GTCTCCCTGATGTTGGGTAGATAG 59.718 50.000 0.00 0.00 44.84 2.08
1139 1175 3.041946 GTCTCCCTGATGTTGGGTAGAT 58.958 50.000 0.00 0.00 44.84 1.98
1169 1207 1.000771 CTCGTCCACCTCCTCCTCA 60.001 63.158 0.00 0.00 0.00 3.86
1301 1339 4.363990 ACGCGGTGGCTCTCAGTG 62.364 66.667 12.47 0.00 36.88 3.66
1607 1645 5.175090 ACTGCTTGTTGTTCTTCTTAAGC 57.825 39.130 0.00 0.00 40.52 3.09
1727 1765 1.140852 TCCGGATCCACAACATCATCC 59.859 52.381 13.41 0.00 32.75 3.51
1968 2009 3.491104 GCCACCCGTGTCAAAAATGTTAA 60.491 43.478 0.00 0.00 0.00 2.01
2270 2311 6.844696 TCACTACACTGCAAACTCTTAAAG 57.155 37.500 0.00 0.00 0.00 1.85
2726 2767 2.096218 GTCGCGAGCAACTGAAAATTCT 60.096 45.455 10.24 0.00 0.00 2.40
2909 2950 1.405105 TGTGCAAGCAACTCTTTCACC 59.595 47.619 0.00 0.00 44.69 4.02
2978 3019 3.386078 TCACATGATAGACAAGAGGGAGC 59.614 47.826 0.00 0.00 0.00 4.70
3156 3217 1.073025 CTACAACTGGGCAGCACCA 59.927 57.895 0.00 0.00 42.05 4.17
3157 3218 1.675641 CCTACAACTGGGCAGCACC 60.676 63.158 0.00 0.00 37.93 5.01
3185 3247 8.966868 ACCCCTCAATAACACAATATAAACAAG 58.033 33.333 0.00 0.00 0.00 3.16
3210 3272 7.597743 AGCAATATACGTAACAATACAGCCTAC 59.402 37.037 0.00 0.00 32.02 3.18
3229 3291 3.133362 CCATTTCAACAGGGCAGCAATAT 59.867 43.478 0.00 0.00 0.00 1.28
3230 3292 2.496871 CCATTTCAACAGGGCAGCAATA 59.503 45.455 0.00 0.00 0.00 1.90
3311 3373 4.158209 TGCATCATCTAAACACCACCAATG 59.842 41.667 0.00 0.00 0.00 2.82
3364 3426 6.747125 ACATTTTGCAACTACAATGATGACA 58.253 32.000 22.31 0.00 32.31 3.58
3365 3427 6.862608 TGACATTTTGCAACTACAATGATGAC 59.137 34.615 22.31 13.13 32.31 3.06
3366 3428 6.862608 GTGACATTTTGCAACTACAATGATGA 59.137 34.615 22.31 7.71 32.31 2.92
3367 3429 6.864685 AGTGACATTTTGCAACTACAATGATG 59.135 34.615 22.31 9.74 33.29 3.07
3368 3430 6.864685 CAGTGACATTTTGCAACTACAATGAT 59.135 34.615 22.31 10.68 32.07 2.45
3526 3638 6.797454 AGAGGTACTTTCTAGAAACTATGCG 58.203 40.000 13.99 6.13 41.55 4.73
3539 3651 8.779354 AGATGTCATTGTAAAGAGGTACTTTC 57.221 34.615 0.00 0.00 44.36 2.62
3668 3788 4.321745 TCGTATTGCTAAAACGACGAGTTC 59.678 41.667 0.00 0.00 43.37 3.01
3689 3809 9.415544 TCAACAGTGATCATATCAATTAGATCG 57.584 33.333 0.00 0.00 41.69 3.69
3844 4005 6.270156 TCAATTAGCATTGCACAGATCAAA 57.730 33.333 11.91 0.00 39.90 2.69
4195 4356 2.926200 CTCGCTGAGGTCAAACATAGTG 59.074 50.000 0.00 0.00 0.00 2.74
4537 4704 1.075674 CTGCCCAGAGCCTCCTCTA 60.076 63.158 0.00 0.00 46.59 2.43
4732 4920 4.487714 ACCTTGCTCGGAATTTATCTCA 57.512 40.909 0.00 0.00 0.00 3.27
4733 4921 5.162000 CAACCTTGCTCGGAATTTATCTC 57.838 43.478 0.00 0.00 0.00 2.75
4794 4982 5.468746 AGCTACAAAAATAGAGCAAACGACA 59.531 36.000 0.00 0.00 37.40 4.35
4952 5142 4.553323 CTGGAAGAAGATGGCAAAACAAG 58.447 43.478 0.00 0.00 34.07 3.16
4955 5145 2.353109 GCCTGGAAGAAGATGGCAAAAC 60.353 50.000 0.00 0.00 42.79 2.43
4956 5146 1.895131 GCCTGGAAGAAGATGGCAAAA 59.105 47.619 0.00 0.00 42.79 2.44
4960 5150 1.030457 CATGCCTGGAAGAAGATGGC 58.970 55.000 0.00 0.00 43.49 4.40
4961 5151 2.295885 GACATGCCTGGAAGAAGATGG 58.704 52.381 0.00 0.00 34.07 3.51
4963 5153 3.201487 TCATGACATGCCTGGAAGAAGAT 59.799 43.478 10.76 0.00 34.07 2.40
4964 5154 2.573009 TCATGACATGCCTGGAAGAAGA 59.427 45.455 10.76 0.00 34.07 2.87
4965 5155 2.995283 TCATGACATGCCTGGAAGAAG 58.005 47.619 10.76 0.00 34.07 2.85
4966 5156 3.438216 TTCATGACATGCCTGGAAGAA 57.562 42.857 10.76 0.00 34.07 2.52
4997 5189 8.883731 GCAGAGATAAAAGATTAACTTGCACTA 58.116 33.333 0.00 0.00 38.98 2.74
5039 5235 1.002087 CCTCCTTTTGTGGCTCTACGT 59.998 52.381 0.00 0.00 0.00 3.57
5056 5252 6.180472 TGAAGATCAACAGTAAAATCCCCTC 58.820 40.000 0.00 0.00 0.00 4.30
5059 5255 7.391833 AGTTCTGAAGATCAACAGTAAAATCCC 59.608 37.037 15.31 0.00 35.84 3.85
5081 5278 1.602377 CGAAACCAGGACCAACAGTTC 59.398 52.381 0.00 0.00 0.00 3.01
5148 5352 3.853831 TCACATGCATGATTGAACCAC 57.146 42.857 32.75 0.00 0.00 4.16
5200 5404 0.235926 GCTGGAACTCGAACTGCAAC 59.764 55.000 0.00 0.00 0.00 4.17
5210 5414 4.024809 GTGTTCACTTTGTAGCTGGAACTC 60.025 45.833 0.00 0.00 34.22 3.01
5268 5472 5.105310 AGGCAATCATTACGACTTCTAGTGT 60.105 40.000 0.00 0.00 0.00 3.55
5295 5499 3.104519 ACATGATTTCCCTGCCAATGA 57.895 42.857 0.00 0.00 0.00 2.57
5296 5500 4.021719 GGATACATGATTTCCCTGCCAATG 60.022 45.833 0.00 0.00 0.00 2.82
5297 5501 4.154942 GGATACATGATTTCCCTGCCAAT 58.845 43.478 0.00 0.00 0.00 3.16
5298 5502 3.565307 GGATACATGATTTCCCTGCCAA 58.435 45.455 0.00 0.00 0.00 4.52
5299 5503 2.158475 GGGATACATGATTTCCCTGCCA 60.158 50.000 18.93 0.00 44.86 4.92
5300 5504 2.519013 GGGATACATGATTTCCCTGCC 58.481 52.381 18.93 0.00 44.86 4.85
5305 5509 5.066593 GGAACAGAGGGATACATGATTTCC 58.933 45.833 0.00 2.11 39.74 3.13
5306 5510 5.934781 AGGAACAGAGGGATACATGATTTC 58.065 41.667 0.00 0.00 39.74 2.17
5307 5511 5.983333 AGGAACAGAGGGATACATGATTT 57.017 39.130 0.00 0.00 39.74 2.17
5308 5512 7.451731 TTTAGGAACAGAGGGATACATGATT 57.548 36.000 0.00 0.00 39.74 2.57
5309 5513 7.639062 ATTTAGGAACAGAGGGATACATGAT 57.361 36.000 0.00 0.00 39.74 2.45
5310 5514 8.742125 ATATTTAGGAACAGAGGGATACATGA 57.258 34.615 0.00 0.00 39.74 3.07
5313 5517 9.670442 ACTTATATTTAGGAACAGAGGGATACA 57.330 33.333 0.00 0.00 39.74 2.29
5316 5520 9.453830 AAGACTTATATTTAGGAACAGAGGGAT 57.546 33.333 0.00 0.00 0.00 3.85
5317 5521 8.855804 AAGACTTATATTTAGGAACAGAGGGA 57.144 34.615 0.00 0.00 0.00 4.20
5318 5522 9.331282 CAAAGACTTATATTTAGGAACAGAGGG 57.669 37.037 0.00 0.00 0.00 4.30
5319 5523 9.892130 ACAAAGACTTATATTTAGGAACAGAGG 57.108 33.333 0.00 0.00 0.00 3.69
5341 5545 9.967451 TGTGGTCCATAATAGAATCTTTACAAA 57.033 29.630 0.00 0.00 0.00 2.83
5346 5550 9.784531 CTGTATGTGGTCCATAATAGAATCTTT 57.215 33.333 0.00 0.00 37.77 2.52
5347 5551 9.159254 TCTGTATGTGGTCCATAATAGAATCTT 57.841 33.333 0.00 0.00 37.77 2.40
5348 5552 8.727100 TCTGTATGTGGTCCATAATAGAATCT 57.273 34.615 0.00 0.00 37.77 2.40
5349 5553 9.376075 CATCTGTATGTGGTCCATAATAGAATC 57.624 37.037 0.00 0.00 37.77 2.52
5350 5554 8.884323 ACATCTGTATGTGGTCCATAATAGAAT 58.116 33.333 0.00 0.00 44.79 2.40
5351 5555 8.262601 ACATCTGTATGTGGTCCATAATAGAA 57.737 34.615 0.00 0.00 44.79 2.10
5352 5556 7.855784 ACATCTGTATGTGGTCCATAATAGA 57.144 36.000 0.00 0.00 44.79 1.98
5358 5562 9.720874 ATCTATATACATCTGTATGTGGTCCAT 57.279 33.333 12.10 0.47 45.99 3.41
5359 5563 8.971073 CATCTATATACATCTGTATGTGGTCCA 58.029 37.037 12.10 0.00 45.99 4.02
5360 5564 7.923344 GCATCTATATACATCTGTATGTGGTCC 59.077 40.741 12.10 0.00 45.99 4.46
5361 5565 8.470002 TGCATCTATATACATCTGTATGTGGTC 58.530 37.037 12.10 4.24 45.99 4.02
5362 5566 8.366359 TGCATCTATATACATCTGTATGTGGT 57.634 34.615 12.10 0.00 45.99 4.16
5363 5567 9.828039 AATGCATCTATATACATCTGTATGTGG 57.172 33.333 12.10 8.21 45.99 4.17
5391 5595 9.973450 GAGCAAAATGAGTGAATCTATACTCTA 57.027 33.333 0.00 0.00 42.86 2.43
5392 5596 7.930865 GGAGCAAAATGAGTGAATCTATACTCT 59.069 37.037 0.00 0.00 42.86 3.24
5393 5597 7.095857 CGGAGCAAAATGAGTGAATCTATACTC 60.096 40.741 0.00 0.00 42.77 2.59
5394 5598 6.703607 CGGAGCAAAATGAGTGAATCTATACT 59.296 38.462 0.00 0.00 0.00 2.12
5395 5599 6.480320 ACGGAGCAAAATGAGTGAATCTATAC 59.520 38.462 0.00 0.00 0.00 1.47
5396 5600 6.582636 ACGGAGCAAAATGAGTGAATCTATA 58.417 36.000 0.00 0.00 0.00 1.31
5397 5601 5.431765 ACGGAGCAAAATGAGTGAATCTAT 58.568 37.500 0.00 0.00 0.00 1.98
5398 5602 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
5399 5603 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
5400 5604 4.492570 CGTACGGAGCAAAATGAGTGAATC 60.493 45.833 7.57 0.00 0.00 2.52
5401 5605 3.370978 CGTACGGAGCAAAATGAGTGAAT 59.629 43.478 7.57 0.00 0.00 2.57
5402 5606 2.734606 CGTACGGAGCAAAATGAGTGAA 59.265 45.455 7.57 0.00 0.00 3.18
5403 5607 2.288579 ACGTACGGAGCAAAATGAGTGA 60.289 45.455 21.06 0.00 0.00 3.41
5404 5608 2.066262 ACGTACGGAGCAAAATGAGTG 58.934 47.619 21.06 0.00 0.00 3.51
5405 5609 2.066262 CACGTACGGAGCAAAATGAGT 58.934 47.619 21.06 0.00 0.00 3.41
5406 5610 1.393539 CCACGTACGGAGCAAAATGAG 59.606 52.381 21.06 0.00 0.00 2.90
5407 5611 1.270412 ACCACGTACGGAGCAAAATGA 60.270 47.619 21.06 0.00 0.00 2.57
5408 5612 1.153353 ACCACGTACGGAGCAAAATG 58.847 50.000 21.06 5.74 0.00 2.32
5409 5613 1.886886 AACCACGTACGGAGCAAAAT 58.113 45.000 21.06 0.00 0.00 1.82
5410 5614 1.666054 AAACCACGTACGGAGCAAAA 58.334 45.000 21.06 0.00 0.00 2.44
5411 5615 2.522836 TAAACCACGTACGGAGCAAA 57.477 45.000 21.06 0.00 0.00 3.68
5412 5616 2.747396 ATAAACCACGTACGGAGCAA 57.253 45.000 21.06 0.43 0.00 3.91
5413 5617 2.754552 ACTATAAACCACGTACGGAGCA 59.245 45.455 21.06 0.00 0.00 4.26
5414 5618 3.111098 CACTATAAACCACGTACGGAGC 58.889 50.000 21.06 0.00 0.00 4.70
5415 5619 3.378112 TCCACTATAAACCACGTACGGAG 59.622 47.826 21.06 12.62 0.00 4.63
5416 5620 3.351740 TCCACTATAAACCACGTACGGA 58.648 45.455 21.06 0.00 0.00 4.69
5417 5621 3.781079 TCCACTATAAACCACGTACGG 57.219 47.619 21.06 8.46 0.00 4.02
5418 5622 5.585390 AGATTCCACTATAAACCACGTACG 58.415 41.667 15.01 15.01 0.00 3.67
5419 5623 6.803642 AGAGATTCCACTATAAACCACGTAC 58.196 40.000 0.00 0.00 0.00 3.67
5420 5624 7.123098 TGAAGAGATTCCACTATAAACCACGTA 59.877 37.037 0.00 0.00 0.00 3.57
5421 5625 5.934402 AGAGATTCCACTATAAACCACGT 57.066 39.130 0.00 0.00 0.00 4.49
5422 5626 6.338146 TGAAGAGATTCCACTATAAACCACG 58.662 40.000 0.00 0.00 0.00 4.94
5423 5627 8.561738 TTTGAAGAGATTCCACTATAAACCAC 57.438 34.615 0.00 0.00 0.00 4.16
5424 5628 8.602424 TCTTTGAAGAGATTCCACTATAAACCA 58.398 33.333 0.00 0.00 0.00 3.67
5425 5629 9.620259 ATCTTTGAAGAGATTCCACTATAAACC 57.380 33.333 0.00 0.00 38.66 3.27
5444 5648 9.555727 CCTCCGTTCCTAAATATAAATCTTTGA 57.444 33.333 0.00 0.00 0.00 2.69
5445 5649 8.784043 CCCTCCGTTCCTAAATATAAATCTTTG 58.216 37.037 0.00 0.00 0.00 2.77
5446 5650 8.720537 TCCCTCCGTTCCTAAATATAAATCTTT 58.279 33.333 0.00 0.00 0.00 2.52
5447 5651 8.271398 TCCCTCCGTTCCTAAATATAAATCTT 57.729 34.615 0.00 0.00 0.00 2.40
5448 5652 7.513091 ACTCCCTCCGTTCCTAAATATAAATCT 59.487 37.037 0.00 0.00 0.00 2.40
5449 5653 7.677892 ACTCCCTCCGTTCCTAAATATAAATC 58.322 38.462 0.00 0.00 0.00 2.17
5450 5654 7.628501 ACTCCCTCCGTTCCTAAATATAAAT 57.371 36.000 0.00 0.00 0.00 1.40
5451 5655 7.786464 AGTACTCCCTCCGTTCCTAAATATAAA 59.214 37.037 0.00 0.00 0.00 1.40
5452 5656 7.300658 AGTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
5453 5657 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
5454 5658 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
5455 5659 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
5456 5660 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
5457 5661 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
5458 5662 3.463048 AAGTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
5459 5663 3.094572 CAAAGTACTCCCTCCGTTCCTA 58.905 50.000 0.00 0.00 0.00 2.94
5460 5664 1.900486 CAAAGTACTCCCTCCGTTCCT 59.100 52.381 0.00 0.00 0.00 3.36
5461 5665 1.622312 ACAAAGTACTCCCTCCGTTCC 59.378 52.381 0.00 0.00 0.00 3.62
5462 5666 4.525912 TTACAAAGTACTCCCTCCGTTC 57.474 45.455 0.00 0.00 0.00 3.95
5463 5667 5.494390 AATTACAAAGTACTCCCTCCGTT 57.506 39.130 0.00 0.00 0.00 4.44
5464 5668 5.394993 GCTAATTACAAAGTACTCCCTCCGT 60.395 44.000 0.00 0.00 0.00 4.69
5465 5669 5.048507 GCTAATTACAAAGTACTCCCTCCG 58.951 45.833 0.00 0.00 0.00 4.63
5466 5670 5.985911 TGCTAATTACAAAGTACTCCCTCC 58.014 41.667 0.00 0.00 0.00 4.30
5467 5671 7.272978 TCATGCTAATTACAAAGTACTCCCTC 58.727 38.462 0.00 0.00 0.00 4.30
5468 5672 7.195374 TCATGCTAATTACAAAGTACTCCCT 57.805 36.000 0.00 0.00 0.00 4.20
5469 5673 7.520614 GCATCATGCTAATTACAAAGTACTCCC 60.521 40.741 1.02 0.00 40.96 4.30
5470 5674 7.355778 GCATCATGCTAATTACAAAGTACTCC 58.644 38.462 1.02 0.00 40.96 3.85
5471 5675 7.355778 GGCATCATGCTAATTACAAAGTACTC 58.644 38.462 10.11 0.00 44.28 2.59
5472 5676 6.263168 GGGCATCATGCTAATTACAAAGTACT 59.737 38.462 10.11 0.00 44.28 2.73
5473 5677 6.438763 GGGCATCATGCTAATTACAAAGTAC 58.561 40.000 10.11 0.00 44.28 2.73
5474 5678 5.238432 CGGGCATCATGCTAATTACAAAGTA 59.762 40.000 10.11 0.00 44.28 2.24
5475 5679 4.036734 CGGGCATCATGCTAATTACAAAGT 59.963 41.667 10.11 0.00 44.28 2.66
5476 5680 4.036734 ACGGGCATCATGCTAATTACAAAG 59.963 41.667 10.11 0.00 44.28 2.77
5477 5681 3.951037 ACGGGCATCATGCTAATTACAAA 59.049 39.130 10.11 0.00 44.28 2.83
5478 5682 3.314913 CACGGGCATCATGCTAATTACAA 59.685 43.478 10.11 0.00 44.28 2.41
5479 5683 2.877786 CACGGGCATCATGCTAATTACA 59.122 45.455 10.11 0.00 44.28 2.41
5480 5684 2.350772 GCACGGGCATCATGCTAATTAC 60.351 50.000 10.11 0.00 44.28 1.89
5481 5685 1.879380 GCACGGGCATCATGCTAATTA 59.121 47.619 10.11 0.00 44.28 1.40
5482 5686 0.670162 GCACGGGCATCATGCTAATT 59.330 50.000 10.11 0.00 44.28 1.40
5483 5687 2.334307 GCACGGGCATCATGCTAAT 58.666 52.632 10.11 0.00 44.28 1.73
5484 5688 3.826221 GCACGGGCATCATGCTAA 58.174 55.556 10.11 0.00 44.28 3.09
5487 5691 3.945434 CGAGCACGGGCATCATGC 61.945 66.667 14.57 0.00 44.61 4.06
5488 5692 2.108514 AACGAGCACGGGCATCATG 61.109 57.895 14.57 0.00 44.61 3.07
5489 5693 2.108514 CAACGAGCACGGGCATCAT 61.109 57.895 14.57 0.00 44.61 2.45
5490 5694 2.741985 CAACGAGCACGGGCATCA 60.742 61.111 14.57 0.00 44.61 3.07
5491 5695 4.166011 GCAACGAGCACGGGCATC 62.166 66.667 14.57 5.65 44.61 3.91
5507 5711 6.700520 TCTTAAGCCGTTTATAGCTTCTTAGC 59.299 38.462 0.00 0.00 46.11 3.09
5508 5712 7.095982 GCTCTTAAGCCGTTTATAGCTTCTTAG 60.096 40.741 0.00 0.00 46.11 2.18
5509 5713 6.700520 GCTCTTAAGCCGTTTATAGCTTCTTA 59.299 38.462 0.00 0.00 46.11 2.10
5510 5714 5.524281 GCTCTTAAGCCGTTTATAGCTTCTT 59.476 40.000 0.00 0.00 46.11 2.52
5511 5715 5.051153 GCTCTTAAGCCGTTTATAGCTTCT 58.949 41.667 0.00 0.00 46.11 2.85
5512 5716 4.809426 TGCTCTTAAGCCGTTTATAGCTTC 59.191 41.667 0.00 0.00 46.11 3.86
5538 5742 8.901793 CGGAGGTAGTAGACTCTAACTAAAAAT 58.098 37.037 0.00 0.00 37.98 1.82
5539 5743 7.885399 ACGGAGGTAGTAGACTCTAACTAAAAA 59.115 37.037 0.00 0.00 37.98 1.94
5540 5744 7.398024 ACGGAGGTAGTAGACTCTAACTAAAA 58.602 38.462 0.00 0.00 37.98 1.52
5541 5745 6.951971 ACGGAGGTAGTAGACTCTAACTAAA 58.048 40.000 0.00 0.00 37.98 1.85
5542 5746 6.407525 GGACGGAGGTAGTAGACTCTAACTAA 60.408 46.154 0.00 0.00 37.98 2.24
5543 5747 5.069781 GGACGGAGGTAGTAGACTCTAACTA 59.930 48.000 0.00 0.00 37.98 2.24
5544 5748 4.141733 GGACGGAGGTAGTAGACTCTAACT 60.142 50.000 0.72 0.72 40.20 2.24
5545 5749 4.126437 GGACGGAGGTAGTAGACTCTAAC 58.874 52.174 0.00 0.00 34.22 2.34
5546 5750 3.181471 CGGACGGAGGTAGTAGACTCTAA 60.181 52.174 0.00 0.00 34.22 2.10
5547 5751 2.363680 CGGACGGAGGTAGTAGACTCTA 59.636 54.545 0.00 0.00 34.22 2.43
5548 5752 1.138661 CGGACGGAGGTAGTAGACTCT 59.861 57.143 0.00 0.00 34.22 3.24
5549 5753 1.580815 CGGACGGAGGTAGTAGACTC 58.419 60.000 0.00 0.00 0.00 3.36
5550 5754 0.179936 CCGGACGGAGGTAGTAGACT 59.820 60.000 4.40 0.00 37.50 3.24
5551 5755 0.817229 CCCGGACGGAGGTAGTAGAC 60.817 65.000 13.13 0.00 37.50 2.59
5552 5756 1.274703 ACCCGGACGGAGGTAGTAGA 61.275 60.000 13.13 0.00 37.50 2.59
5553 5757 0.394899 AACCCGGACGGAGGTAGTAG 60.395 60.000 13.13 0.00 34.45 2.57
5554 5758 0.039618 AAACCCGGACGGAGGTAGTA 59.960 55.000 13.13 0.00 34.45 1.82
5555 5759 0.039618 TAAACCCGGACGGAGGTAGT 59.960 55.000 13.13 0.00 34.45 2.73
5556 5760 1.406903 ATAAACCCGGACGGAGGTAG 58.593 55.000 13.13 0.00 34.45 3.18
5557 5761 1.864669 AATAAACCCGGACGGAGGTA 58.135 50.000 13.13 1.24 34.45 3.08
5558 5762 1.758862 CTAATAAACCCGGACGGAGGT 59.241 52.381 13.13 0.00 38.27 3.85
5559 5763 1.069668 CCTAATAAACCCGGACGGAGG 59.930 57.143 13.13 5.18 37.50 4.30
5560 5764 1.539712 GCCTAATAAACCCGGACGGAG 60.540 57.143 13.13 5.04 37.50 4.63
5561 5765 0.465287 GCCTAATAAACCCGGACGGA 59.535 55.000 13.13 0.00 37.50 4.69
5562 5766 0.466963 AGCCTAATAAACCCGGACGG 59.533 55.000 0.73 3.25 37.81 4.79
5563 5767 3.457610 TTAGCCTAATAAACCCGGACG 57.542 47.619 0.73 0.00 0.00 4.79
5564 5768 5.415389 TGTTTTTAGCCTAATAAACCCGGAC 59.585 40.000 0.73 0.00 31.25 4.79
5565 5769 5.568392 TGTTTTTAGCCTAATAAACCCGGA 58.432 37.500 0.73 0.00 31.25 5.14
5566 5770 5.900865 TGTTTTTAGCCTAATAAACCCGG 57.099 39.130 14.22 0.00 31.25 5.73
5567 5771 6.916440 AGTTGTTTTTAGCCTAATAAACCCG 58.084 36.000 14.22 0.00 31.25 5.28
5568 5772 8.582437 AGAAGTTGTTTTTAGCCTAATAAACCC 58.418 33.333 14.22 8.69 31.25 4.11
5569 5773 9.622004 GAGAAGTTGTTTTTAGCCTAATAAACC 57.378 33.333 14.22 5.74 31.25 3.27
5575 5779 9.269453 GTCTAAGAGAAGTTGTTTTTAGCCTAA 57.731 33.333 0.00 0.00 0.00 2.69
5576 5780 7.876582 GGTCTAAGAGAAGTTGTTTTTAGCCTA 59.123 37.037 0.00 0.00 0.00 3.93
5577 5781 6.711194 GGTCTAAGAGAAGTTGTTTTTAGCCT 59.289 38.462 0.00 0.00 0.00 4.58
5578 5782 6.485648 TGGTCTAAGAGAAGTTGTTTTTAGCC 59.514 38.462 0.00 0.00 0.00 3.93
5579 5783 7.492352 TGGTCTAAGAGAAGTTGTTTTTAGC 57.508 36.000 0.00 0.00 0.00 3.09
5580 5784 9.326413 TCTTGGTCTAAGAGAAGTTGTTTTTAG 57.674 33.333 0.00 0.00 40.43 1.85
5581 5785 9.106070 GTCTTGGTCTAAGAGAAGTTGTTTTTA 57.894 33.333 0.00 0.00 45.71 1.52
5582 5786 7.610305 TGTCTTGGTCTAAGAGAAGTTGTTTTT 59.390 33.333 0.00 0.00 45.71 1.94
5583 5787 7.065923 GTGTCTTGGTCTAAGAGAAGTTGTTTT 59.934 37.037 0.00 0.00 45.71 2.43
5584 5788 6.539103 GTGTCTTGGTCTAAGAGAAGTTGTTT 59.461 38.462 0.00 0.00 45.71 2.83
5585 5789 6.049790 GTGTCTTGGTCTAAGAGAAGTTGTT 58.950 40.000 0.00 0.00 45.71 2.83
5586 5790 5.128827 TGTGTCTTGGTCTAAGAGAAGTTGT 59.871 40.000 0.00 0.00 45.71 3.32
5587 5791 5.601662 TGTGTCTTGGTCTAAGAGAAGTTG 58.398 41.667 0.00 0.00 45.71 3.16
5588 5792 5.871396 TGTGTCTTGGTCTAAGAGAAGTT 57.129 39.130 0.00 0.00 45.71 2.66
5589 5793 6.722129 ACTATGTGTCTTGGTCTAAGAGAAGT 59.278 38.462 0.00 0.00 45.71 3.01
5590 5794 7.164230 ACTATGTGTCTTGGTCTAAGAGAAG 57.836 40.000 0.00 0.00 45.71 2.85
5591 5795 8.645814 TTACTATGTGTCTTGGTCTAAGAGAA 57.354 34.615 0.00 0.00 45.71 2.87
5592 5796 8.824756 ATTACTATGTGTCTTGGTCTAAGAGA 57.175 34.615 0.00 0.00 45.71 3.10
5593 5797 9.877178 AAATTACTATGTGTCTTGGTCTAAGAG 57.123 33.333 0.00 0.00 45.71 2.85
5594 5798 9.653287 CAAATTACTATGTGTCTTGGTCTAAGA 57.347 33.333 0.00 0.00 43.01 2.10
5595 5799 8.391106 GCAAATTACTATGTGTCTTGGTCTAAG 58.609 37.037 0.00 0.00 37.76 2.18
5596 5800 8.100791 AGCAAATTACTATGTGTCTTGGTCTAA 58.899 33.333 0.00 0.00 0.00 2.10
5597 5801 7.620880 AGCAAATTACTATGTGTCTTGGTCTA 58.379 34.615 0.00 0.00 0.00 2.59
5598 5802 6.476378 AGCAAATTACTATGTGTCTTGGTCT 58.524 36.000 0.00 0.00 0.00 3.85
5599 5803 6.455646 CGAGCAAATTACTATGTGTCTTGGTC 60.456 42.308 0.00 0.00 37.21 4.02
5600 5804 5.351465 CGAGCAAATTACTATGTGTCTTGGT 59.649 40.000 0.00 0.00 0.00 3.67
5601 5805 5.727791 GCGAGCAAATTACTATGTGTCTTGG 60.728 44.000 0.00 0.00 0.00 3.61
5602 5806 5.163864 TGCGAGCAAATTACTATGTGTCTTG 60.164 40.000 0.00 0.00 0.00 3.02
5603 5807 4.935205 TGCGAGCAAATTACTATGTGTCTT 59.065 37.500 0.00 0.00 0.00 3.01
5604 5808 4.503910 TGCGAGCAAATTACTATGTGTCT 58.496 39.130 0.00 0.00 0.00 3.41
5605 5809 4.857871 TGCGAGCAAATTACTATGTGTC 57.142 40.909 0.00 0.00 0.00 3.67
5606 5810 5.818136 AATGCGAGCAAATTACTATGTGT 57.182 34.783 0.57 0.00 0.00 3.72
5607 5811 8.786937 AATTAATGCGAGCAAATTACTATGTG 57.213 30.769 0.57 0.00 0.00 3.21
5608 5812 8.840321 AGAATTAATGCGAGCAAATTACTATGT 58.160 29.630 0.57 0.00 0.00 2.29
5609 5813 9.669353 AAGAATTAATGCGAGCAAATTACTATG 57.331 29.630 0.57 0.00 0.00 2.23
5610 5814 9.884465 GAAGAATTAATGCGAGCAAATTACTAT 57.116 29.630 0.57 0.00 0.00 2.12
5611 5815 8.342634 GGAAGAATTAATGCGAGCAAATTACTA 58.657 33.333 0.57 0.00 0.00 1.82
5612 5816 7.148086 TGGAAGAATTAATGCGAGCAAATTACT 60.148 33.333 0.57 2.64 0.00 2.24
5613 5817 6.972328 TGGAAGAATTAATGCGAGCAAATTAC 59.028 34.615 0.57 0.64 0.00 1.89
5614 5818 7.094508 TGGAAGAATTAATGCGAGCAAATTA 57.905 32.000 0.57 0.00 0.00 1.40
5615 5819 5.964758 TGGAAGAATTAATGCGAGCAAATT 58.035 33.333 0.57 4.69 0.00 1.82
5616 5820 5.581126 TGGAAGAATTAATGCGAGCAAAT 57.419 34.783 0.57 0.00 0.00 2.32
5617 5821 5.581126 ATGGAAGAATTAATGCGAGCAAA 57.419 34.783 0.57 0.00 0.00 3.68
5618 5822 5.450412 GGAATGGAAGAATTAATGCGAGCAA 60.450 40.000 0.57 0.00 0.00 3.91
5619 5823 4.036734 GGAATGGAAGAATTAATGCGAGCA 59.963 41.667 0.00 0.00 0.00 4.26
5620 5824 4.036734 TGGAATGGAAGAATTAATGCGAGC 59.963 41.667 0.00 0.00 0.00 5.03
5621 5825 5.756195 TGGAATGGAAGAATTAATGCGAG 57.244 39.130 0.00 0.00 0.00 5.03
5622 5826 6.239008 GGAATGGAATGGAAGAATTAATGCGA 60.239 38.462 0.00 0.00 0.00 5.10
5623 5827 5.922544 GGAATGGAATGGAAGAATTAATGCG 59.077 40.000 0.00 0.00 0.00 4.73
5624 5828 6.183360 TGGGAATGGAATGGAAGAATTAATGC 60.183 38.462 0.00 0.00 0.00 3.56
5625 5829 7.364149 TGGGAATGGAATGGAAGAATTAATG 57.636 36.000 0.00 0.00 0.00 1.90
5626 5830 7.993349 TTGGGAATGGAATGGAAGAATTAAT 57.007 32.000 0.00 0.00 0.00 1.40
5627 5831 7.635529 GCATTGGGAATGGAATGGAAGAATTAA 60.636 37.037 0.00 0.00 39.31 1.40
5628 5832 6.183360 GCATTGGGAATGGAATGGAAGAATTA 60.183 38.462 0.00 0.00 39.31 1.40
5629 5833 5.397109 GCATTGGGAATGGAATGGAAGAATT 60.397 40.000 0.00 0.00 39.31 2.17
5630 5834 4.102054 GCATTGGGAATGGAATGGAAGAAT 59.898 41.667 0.00 0.00 39.31 2.40
5631 5835 3.451902 GCATTGGGAATGGAATGGAAGAA 59.548 43.478 0.00 0.00 39.31 2.52
5632 5836 3.033184 GCATTGGGAATGGAATGGAAGA 58.967 45.455 0.00 0.00 39.31 2.87
5633 5837 2.767394 TGCATTGGGAATGGAATGGAAG 59.233 45.455 0.00 0.00 36.22 3.46
5634 5838 2.500910 GTGCATTGGGAATGGAATGGAA 59.499 45.455 0.00 0.00 41.02 3.53
5635 5839 2.109774 GTGCATTGGGAATGGAATGGA 58.890 47.619 0.00 0.00 41.02 3.41
5636 5840 2.101917 GAGTGCATTGGGAATGGAATGG 59.898 50.000 0.00 0.00 41.02 3.16
5637 5841 3.028850 AGAGTGCATTGGGAATGGAATG 58.971 45.455 0.00 0.00 41.02 2.67
5638 5842 3.053095 AGAGAGTGCATTGGGAATGGAAT 60.053 43.478 0.00 0.00 41.02 3.01
5639 5843 2.309755 AGAGAGTGCATTGGGAATGGAA 59.690 45.455 0.00 0.00 41.02 3.53
5640 5844 1.918262 AGAGAGTGCATTGGGAATGGA 59.082 47.619 0.00 0.00 39.31 3.41
5641 5845 2.295885 GAGAGAGTGCATTGGGAATGG 58.704 52.381 0.00 0.00 39.31 3.16
5642 5846 2.995283 TGAGAGAGTGCATTGGGAATG 58.005 47.619 0.00 0.00 41.85 2.67
5643 5847 3.947612 ATGAGAGAGTGCATTGGGAAT 57.052 42.857 0.00 0.00 0.00 3.01
5644 5848 4.711399 CATATGAGAGAGTGCATTGGGAA 58.289 43.478 0.00 0.00 0.00 3.97
5645 5849 3.495629 GCATATGAGAGAGTGCATTGGGA 60.496 47.826 6.97 0.00 37.52 4.37
5646 5850 2.812591 GCATATGAGAGAGTGCATTGGG 59.187 50.000 6.97 0.00 37.52 4.12
5647 5851 3.473625 TGCATATGAGAGAGTGCATTGG 58.526 45.455 6.97 0.00 42.13 3.16
5652 5856 2.490991 TGCATGCATATGAGAGAGTGC 58.509 47.619 18.46 7.10 36.36 4.40
5653 5857 3.250280 GGTTGCATGCATATGAGAGAGTG 59.750 47.826 23.37 0.00 36.36 3.51
5654 5858 3.118149 TGGTTGCATGCATATGAGAGAGT 60.118 43.478 23.37 0.00 36.36 3.24
5655 5859 3.473625 TGGTTGCATGCATATGAGAGAG 58.526 45.455 23.37 0.00 36.36 3.20
5656 5860 3.564053 TGGTTGCATGCATATGAGAGA 57.436 42.857 23.37 0.00 36.36 3.10
5657 5861 4.277423 TCATTGGTTGCATGCATATGAGAG 59.723 41.667 23.37 9.45 36.36 3.20
5658 5862 4.208746 TCATTGGTTGCATGCATATGAGA 58.791 39.130 23.37 12.64 36.36 3.27
5659 5863 4.577834 TCATTGGTTGCATGCATATGAG 57.422 40.909 23.37 10.45 36.36 2.90
5660 5864 5.340439 TTTCATTGGTTGCATGCATATGA 57.660 34.783 23.37 22.11 36.36 2.15
5661 5865 6.424176 TTTTTCATTGGTTGCATGCATATG 57.576 33.333 23.37 20.40 37.36 1.78
5662 5866 5.065474 GCTTTTTCATTGGTTGCATGCATAT 59.935 36.000 23.37 10.02 0.00 1.78
5663 5867 4.392445 GCTTTTTCATTGGTTGCATGCATA 59.608 37.500 23.37 9.86 0.00 3.14
5664 5868 3.189702 GCTTTTTCATTGGTTGCATGCAT 59.810 39.130 23.37 2.36 0.00 3.96
5665 5869 2.548904 GCTTTTTCATTGGTTGCATGCA 59.451 40.909 18.46 18.46 0.00 3.96
5666 5870 2.548904 TGCTTTTTCATTGGTTGCATGC 59.451 40.909 11.82 11.82 0.00 4.06
5667 5871 3.363182 CGTGCTTTTTCATTGGTTGCATG 60.363 43.478 0.00 0.00 0.00 4.06
5668 5872 2.801679 CGTGCTTTTTCATTGGTTGCAT 59.198 40.909 0.00 0.00 0.00 3.96
5669 5873 2.200067 CGTGCTTTTTCATTGGTTGCA 58.800 42.857 0.00 0.00 0.00 4.08
5670 5874 1.070643 GCGTGCTTTTTCATTGGTTGC 60.071 47.619 0.00 0.00 0.00 4.17
5671 5875 2.200067 TGCGTGCTTTTTCATTGGTTG 58.800 42.857 0.00 0.00 0.00 3.77
5672 5876 2.593346 TGCGTGCTTTTTCATTGGTT 57.407 40.000 0.00 0.00 0.00 3.67
5673 5877 2.035704 TCATGCGTGCTTTTTCATTGGT 59.964 40.909 0.00 0.00 0.00 3.67
5674 5878 2.674954 TCATGCGTGCTTTTTCATTGG 58.325 42.857 0.00 0.00 0.00 3.16
5675 5879 3.737266 ACTTCATGCGTGCTTTTTCATTG 59.263 39.130 0.00 0.00 0.00 2.82
5676 5880 3.737266 CACTTCATGCGTGCTTTTTCATT 59.263 39.130 0.00 0.00 0.00 2.57
5677 5881 3.243501 ACACTTCATGCGTGCTTTTTCAT 60.244 39.130 12.93 0.00 35.84 2.57
5678 5882 2.098934 ACACTTCATGCGTGCTTTTTCA 59.901 40.909 12.93 0.00 35.84 2.69
5679 5883 2.731217 ACACTTCATGCGTGCTTTTTC 58.269 42.857 12.93 0.00 35.84 2.29
5680 5884 2.869233 ACACTTCATGCGTGCTTTTT 57.131 40.000 12.93 0.00 35.84 1.94
5681 5885 4.503741 AATACACTTCATGCGTGCTTTT 57.496 36.364 12.93 4.32 35.84 2.27
5682 5886 5.621197 TTAATACACTTCATGCGTGCTTT 57.379 34.783 12.93 9.91 35.84 3.51
5683 5887 5.818136 ATTAATACACTTCATGCGTGCTT 57.182 34.783 12.93 10.04 35.84 3.91
5684 5888 5.818136 AATTAATACACTTCATGCGTGCT 57.182 34.783 12.93 5.55 35.84 4.40
5685 5889 6.258160 AGAAATTAATACACTTCATGCGTGC 58.742 36.000 12.93 0.00 35.84 5.34
5686 5890 7.463544 TGAGAAATTAATACACTTCATGCGTG 58.536 34.615 11.82 11.82 38.32 5.34
5687 5891 7.609760 TGAGAAATTAATACACTTCATGCGT 57.390 32.000 0.00 0.00 0.00 5.24
5688 5892 6.630443 GCTGAGAAATTAATACACTTCATGCG 59.370 38.462 0.00 0.00 0.00 4.73
5689 5893 6.914757 GGCTGAGAAATTAATACACTTCATGC 59.085 38.462 0.00 0.00 0.00 4.06
5690 5894 7.988737 TGGCTGAGAAATTAATACACTTCATG 58.011 34.615 0.00 0.00 0.00 3.07
5691 5895 8.627403 CATGGCTGAGAAATTAATACACTTCAT 58.373 33.333 0.00 0.00 0.00 2.57
5692 5896 7.988737 CATGGCTGAGAAATTAATACACTTCA 58.011 34.615 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.