Multiple sequence alignment - TraesCS5B01G217600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G217600 chr5B 100.000 4995 0 0 1 4995 391638422 391643416 0.000000e+00 9225.0
1 TraesCS5B01G217600 chr5B 96.949 1180 34 2 1289 2466 684598523 684599702 0.000000e+00 1978.0
2 TraesCS5B01G217600 chr5B 86.822 129 15 2 446 573 293508811 293508938 5.210000e-30 143.0
3 TraesCS5B01G217600 chr5B 80.000 155 25 5 947 1098 392137403 392137554 5.290000e-20 110.0
4 TraesCS5B01G217600 chr3B 94.604 1186 55 8 1289 2470 803113272 803112092 0.000000e+00 1827.0
5 TraesCS5B01G217600 chr1B 95.238 1092 40 7 1386 2475 592262539 592261458 0.000000e+00 1718.0
6 TraesCS5B01G217600 chr4D 95.875 994 39 2 1474 2466 509485598 509484606 0.000000e+00 1607.0
7 TraesCS5B01G217600 chr4D 84.184 196 19 5 446 630 120884368 120884562 3.970000e-41 180.0
8 TraesCS5B01G217600 chr4D 88.966 145 15 1 458 602 327379519 327379662 1.430000e-40 178.0
9 TraesCS5B01G217600 chr3D 91.005 1134 93 9 1334 2464 127247430 127248557 0.000000e+00 1520.0
10 TraesCS5B01G217600 chr3D 89.555 1168 112 10 1302 2465 417707041 417708202 0.000000e+00 1472.0
11 TraesCS5B01G217600 chr1D 90.076 1179 105 9 1289 2464 449009407 449008238 0.000000e+00 1519.0
12 TraesCS5B01G217600 chr1D 81.667 180 24 7 452 630 205971328 205971499 1.870000e-29 141.0
13 TraesCS5B01G217600 chrUn 89.875 1116 105 7 1352 2465 75060918 75062027 0.000000e+00 1428.0
14 TraesCS5B01G217600 chr2A 88.409 1182 123 10 1289 2465 598344696 598345868 0.000000e+00 1411.0
15 TraesCS5B01G217600 chr5A 93.617 752 44 2 4244 4995 436262729 436263476 0.000000e+00 1120.0
16 TraesCS5B01G217600 chr5A 91.034 803 64 2 3336 4130 436261715 436262517 0.000000e+00 1077.0
17 TraesCS5B01G217600 chr5A 86.207 754 73 18 2603 3335 436260770 436261513 0.000000e+00 787.0
18 TraesCS5B01G217600 chr5A 92.578 512 37 1 748 1259 436259453 436259963 0.000000e+00 734.0
19 TraesCS5B01G217600 chr5A 87.250 400 22 12 1 388 436258792 436259174 3.570000e-116 429.0
20 TraesCS5B01G217600 chr5D 91.656 803 54 7 3336 4136 334699482 334700273 0.000000e+00 1099.0
21 TraesCS5B01G217600 chr5D 93.195 529 35 1 761 1289 334698164 334698691 0.000000e+00 776.0
22 TraesCS5B01G217600 chr5D 94.688 433 23 0 4563 4995 334701083 334701515 0.000000e+00 673.0
23 TraesCS5B01G217600 chr5D 86.592 537 48 8 2493 3028 334698953 334699466 5.610000e-159 571.0
24 TraesCS5B01G217600 chr5D 82.563 476 44 21 1 445 334697453 334697920 2.820000e-102 383.0
25 TraesCS5B01G217600 chr5D 90.809 272 21 3 4244 4515 334700479 334700746 1.320000e-95 361.0
26 TraesCS5B01G217600 chr5D 80.000 180 30 5 922 1098 335131739 335131915 1.460000e-25 128.0
27 TraesCS5B01G217600 chr5D 96.154 52 2 0 4136 4187 334700304 334700355 8.910000e-13 86.1
28 TraesCS5B01G217600 chr7A 83.794 543 81 6 3504 4041 501064601 501064061 4.460000e-140 508.0
29 TraesCS5B01G217600 chr7A 83.129 326 49 6 896 1218 501065301 501064979 4.890000e-75 292.0
30 TraesCS5B01G217600 chr7A 84.249 273 40 3 4625 4894 501063752 501063480 3.830000e-66 263.0
31 TraesCS5B01G217600 chr7B 83.456 544 82 7 3504 4041 450571984 450571443 2.680000e-137 499.0
32 TraesCS5B01G217600 chr7B 85.130 269 37 2 4629 4894 450571166 450570898 6.370000e-69 272.0
33 TraesCS5B01G217600 chr4A 84.127 189 25 3 446 630 452348702 452348889 1.430000e-40 178.0
34 TraesCS5B01G217600 chr4A 87.302 126 12 4 445 567 143701110 143701234 1.870000e-29 141.0
35 TraesCS5B01G217600 chr7D 85.526 152 17 4 458 608 540626756 540626609 2.410000e-33 154.0
36 TraesCS5B01G217600 chr6D 89.381 113 8 4 492 602 462636980 462636870 6.740000e-29 139.0
37 TraesCS5B01G217600 chr6A 85.417 96 11 2 514 608 597865616 597865523 4.120000e-16 97.1
38 TraesCS5B01G217600 chr3A 100.000 30 0 0 458 487 122469436 122469407 6.990000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G217600 chr5B 391638422 391643416 4994 False 9225.000000 9225 100.000000 1 4995 1 chr5B.!!$F2 4994
1 TraesCS5B01G217600 chr5B 684598523 684599702 1179 False 1978.000000 1978 96.949000 1289 2466 1 chr5B.!!$F4 1177
2 TraesCS5B01G217600 chr3B 803112092 803113272 1180 True 1827.000000 1827 94.604000 1289 2470 1 chr3B.!!$R1 1181
3 TraesCS5B01G217600 chr1B 592261458 592262539 1081 True 1718.000000 1718 95.238000 1386 2475 1 chr1B.!!$R1 1089
4 TraesCS5B01G217600 chr4D 509484606 509485598 992 True 1607.000000 1607 95.875000 1474 2466 1 chr4D.!!$R1 992
5 TraesCS5B01G217600 chr3D 127247430 127248557 1127 False 1520.000000 1520 91.005000 1334 2464 1 chr3D.!!$F1 1130
6 TraesCS5B01G217600 chr3D 417707041 417708202 1161 False 1472.000000 1472 89.555000 1302 2465 1 chr3D.!!$F2 1163
7 TraesCS5B01G217600 chr1D 449008238 449009407 1169 True 1519.000000 1519 90.076000 1289 2464 1 chr1D.!!$R1 1175
8 TraesCS5B01G217600 chrUn 75060918 75062027 1109 False 1428.000000 1428 89.875000 1352 2465 1 chrUn.!!$F1 1113
9 TraesCS5B01G217600 chr2A 598344696 598345868 1172 False 1411.000000 1411 88.409000 1289 2465 1 chr2A.!!$F1 1176
10 TraesCS5B01G217600 chr5A 436258792 436263476 4684 False 829.400000 1120 90.137200 1 4995 5 chr5A.!!$F1 4994
11 TraesCS5B01G217600 chr5D 334697453 334701515 4062 False 564.157143 1099 90.808143 1 4995 7 chr5D.!!$F2 4994
12 TraesCS5B01G217600 chr7A 501063480 501065301 1821 True 354.333333 508 83.724000 896 4894 3 chr7A.!!$R1 3998
13 TraesCS5B01G217600 chr7B 450570898 450571984 1086 True 385.500000 499 84.293000 3504 4894 2 chr7B.!!$R1 1390

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
708 823 0.033601 TGCGCCTTGGTATTTCCCAT 60.034 50.000 4.18 0.0 33.60 4.00 F
1975 2297 1.007038 TCGTGGTGGTGTTCGTAGC 60.007 57.895 0.00 0.0 0.00 3.58 F
3179 3894 0.037512 CAGCTGTGACAGACTGGAGG 60.038 60.000 18.18 0.0 34.49 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2412 2804 0.179234 TCAAAGCACCAACACCGAGA 59.821 50.0 0.00 0.0 0.00 4.04 R
3233 3950 0.031043 TGTGCATGCTGCTGTTGTTC 59.969 50.0 20.33 0.0 45.31 3.18 R
4645 5991 0.331616 ACACTTGGGGAATGCCTACC 59.668 55.0 0.00 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 0.037605 AGGTGTTAAAGCGACTCCCG 60.038 55.000 0.00 0.00 42.21 5.14
124 125 4.942363 AAGCCATGGGAGCTATAATGAT 57.058 40.909 15.13 0.00 40.49 2.45
125 126 4.942363 AGCCATGGGAGCTATAATGATT 57.058 40.909 15.13 0.00 39.29 2.57
126 127 5.266709 AGCCATGGGAGCTATAATGATTT 57.733 39.130 15.13 0.00 39.29 2.17
127 128 5.648247 AGCCATGGGAGCTATAATGATTTT 58.352 37.500 15.13 0.00 39.29 1.82
128 129 5.479375 AGCCATGGGAGCTATAATGATTTTG 59.521 40.000 15.13 0.00 39.29 2.44
129 130 5.244626 GCCATGGGAGCTATAATGATTTTGT 59.755 40.000 15.13 0.00 0.00 2.83
130 131 6.434028 GCCATGGGAGCTATAATGATTTTGTA 59.566 38.462 15.13 0.00 0.00 2.41
131 132 7.123247 GCCATGGGAGCTATAATGATTTTGTAT 59.877 37.037 15.13 0.00 0.00 2.29
184 186 7.133891 AGAAATTTTGGTTCTCACACTATCG 57.866 36.000 0.00 0.00 29.04 2.92
188 190 8.786826 AATTTTGGTTCTCACACTATCGATAA 57.213 30.769 6.58 0.00 0.00 1.75
204 206 9.687210 ACTATCGATAACGTTATTGCAGAAATA 57.313 29.630 27.08 19.40 40.69 1.40
298 330 8.486210 TCTGCATCTATTCCTACTTGTACAATT 58.514 33.333 9.13 6.20 0.00 2.32
340 372 9.771915 AATTTTGCACACTTATTTTGTCTTTTG 57.228 25.926 0.00 0.00 0.00 2.44
342 374 8.988064 TTTGCACACTTATTTTGTCTTTTGTA 57.012 26.923 0.00 0.00 0.00 2.41
358 390 2.335316 TGTAGGCAACGTTTTCCACT 57.665 45.000 16.16 5.86 46.39 4.00
412 527 7.071196 ACAAGTATAAGATAGATGGGCACAAGA 59.929 37.037 0.00 0.00 0.00 3.02
430 545 5.239306 CACAAGAGCCAACTATGTCAGAAAA 59.761 40.000 0.00 0.00 0.00 2.29
446 561 7.479980 TGTCAGAAAATAAGGCATTATTTCGG 58.520 34.615 24.61 18.35 46.23 4.30
447 562 7.338196 TGTCAGAAAATAAGGCATTATTTCGGA 59.662 33.333 24.61 19.77 46.23 4.55
448 563 8.188139 GTCAGAAAATAAGGCATTATTTCGGAA 58.812 33.333 24.61 11.68 46.23 4.30
449 564 8.405531 TCAGAAAATAAGGCATTATTTCGGAAG 58.594 33.333 24.61 14.92 46.23 3.46
450 565 8.405531 CAGAAAATAAGGCATTATTTCGGAAGA 58.594 33.333 24.61 0.00 46.23 2.87
451 566 8.624776 AGAAAATAAGGCATTATTTCGGAAGAG 58.375 33.333 24.61 0.00 46.23 2.85
453 568 4.503714 AAGGCATTATTTCGGAAGAGGA 57.496 40.909 0.00 0.00 43.69 3.71
455 570 5.053978 AGGCATTATTTCGGAAGAGGATT 57.946 39.130 0.00 0.00 43.69 3.01
457 572 5.300286 AGGCATTATTTCGGAAGAGGATTTG 59.700 40.000 0.00 0.00 43.69 2.32
458 573 5.507985 GGCATTATTTCGGAAGAGGATTTGG 60.508 44.000 0.00 0.00 43.69 3.28
459 574 5.299279 GCATTATTTCGGAAGAGGATTTGGA 59.701 40.000 0.00 0.00 43.69 3.53
460 575 6.514048 GCATTATTTCGGAAGAGGATTTGGAG 60.514 42.308 0.00 0.00 43.69 3.86
461 576 2.403252 TTCGGAAGAGGATTTGGAGC 57.597 50.000 0.00 0.00 43.69 4.70
462 577 1.275666 TCGGAAGAGGATTTGGAGCA 58.724 50.000 0.00 0.00 34.84 4.26
463 578 1.066143 TCGGAAGAGGATTTGGAGCAC 60.066 52.381 0.00 0.00 34.84 4.40
464 579 1.756430 GGAAGAGGATTTGGAGCACC 58.244 55.000 0.00 0.00 0.00 5.01
465 580 1.283321 GGAAGAGGATTTGGAGCACCT 59.717 52.381 0.71 0.00 37.04 4.00
466 581 2.363683 GAAGAGGATTTGGAGCACCTG 58.636 52.381 0.71 0.00 37.04 4.00
467 582 0.622665 AGAGGATTTGGAGCACCTGG 59.377 55.000 0.71 0.00 37.04 4.45
468 583 0.394899 GAGGATTTGGAGCACCTGGG 60.395 60.000 0.71 0.00 37.04 4.45
469 584 1.142688 AGGATTTGGAGCACCTGGGT 61.143 55.000 0.71 0.00 37.04 4.51
546 661 4.890158 AAAACTGGGATTTTGGGATGTC 57.110 40.909 0.00 0.00 30.56 3.06
547 662 3.541242 AACTGGGATTTTGGGATGTCA 57.459 42.857 0.00 0.00 0.00 3.58
548 663 3.541242 ACTGGGATTTTGGGATGTCAA 57.459 42.857 0.00 0.00 0.00 3.18
549 664 3.855668 ACTGGGATTTTGGGATGTCAAA 58.144 40.909 0.00 0.00 35.15 2.69
550 665 3.578282 ACTGGGATTTTGGGATGTCAAAC 59.422 43.478 0.00 0.00 36.49 2.93
551 666 2.903135 TGGGATTTTGGGATGTCAAACC 59.097 45.455 0.00 0.00 36.49 3.27
552 667 3.173151 GGGATTTTGGGATGTCAAACCT 58.827 45.455 0.00 0.00 36.49 3.50
553 668 3.055891 GGGATTTTGGGATGTCAAACCTG 60.056 47.826 0.00 0.00 36.49 4.00
554 669 3.055891 GGATTTTGGGATGTCAAACCTGG 60.056 47.826 0.00 0.00 36.49 4.45
555 670 2.008242 TTTGGGATGTCAAACCTGGG 57.992 50.000 0.00 0.00 32.39 4.45
556 671 0.856982 TTGGGATGTCAAACCTGGGT 59.143 50.000 0.00 0.00 0.00 4.51
557 672 0.112218 TGGGATGTCAAACCTGGGTG 59.888 55.000 0.00 0.00 0.00 4.61
558 673 1.250840 GGGATGTCAAACCTGGGTGC 61.251 60.000 0.00 0.00 0.00 5.01
559 674 1.250840 GGATGTCAAACCTGGGTGCC 61.251 60.000 0.00 0.00 0.00 5.01
560 675 1.228862 ATGTCAAACCTGGGTGCCC 60.229 57.895 0.00 0.00 0.00 5.36
561 676 2.017668 ATGTCAAACCTGGGTGCCCA 62.018 55.000 9.90 9.90 45.02 5.36
562 677 1.456705 GTCAAACCTGGGTGCCCAA 60.457 57.895 11.54 0.00 46.63 4.12
563 678 0.831711 GTCAAACCTGGGTGCCCAAT 60.832 55.000 11.54 0.00 46.63 3.16
564 679 0.541764 TCAAACCTGGGTGCCCAATC 60.542 55.000 11.54 0.00 46.63 2.67
565 680 0.542702 CAAACCTGGGTGCCCAATCT 60.543 55.000 11.54 0.00 46.63 2.40
566 681 1.080638 AAACCTGGGTGCCCAATCTA 58.919 50.000 11.54 0.00 46.63 1.98
567 682 1.308877 AACCTGGGTGCCCAATCTAT 58.691 50.000 11.54 0.00 46.63 1.98
568 683 1.308877 ACCTGGGTGCCCAATCTATT 58.691 50.000 11.54 0.00 46.63 1.73
569 684 1.215423 ACCTGGGTGCCCAATCTATTC 59.785 52.381 11.54 0.00 46.63 1.75
570 685 1.479389 CCTGGGTGCCCAATCTATTCC 60.479 57.143 11.54 0.00 46.63 3.01
571 686 0.555769 TGGGTGCCCAATCTATTCCC 59.444 55.000 7.63 0.00 44.12 3.97
572 687 0.537371 GGGTGCCCAATCTATTCCCG 60.537 60.000 1.66 0.00 35.81 5.14
573 688 0.182775 GGTGCCCAATCTATTCCCGT 59.817 55.000 0.00 0.00 0.00 5.28
574 689 1.308998 GTGCCCAATCTATTCCCGTG 58.691 55.000 0.00 0.00 0.00 4.94
575 690 0.916086 TGCCCAATCTATTCCCGTGT 59.084 50.000 0.00 0.00 0.00 4.49
576 691 1.308998 GCCCAATCTATTCCCGTGTG 58.691 55.000 0.00 0.00 0.00 3.82
577 692 1.134220 GCCCAATCTATTCCCGTGTGA 60.134 52.381 0.00 0.00 0.00 3.58
578 693 2.682563 GCCCAATCTATTCCCGTGTGAA 60.683 50.000 0.00 0.00 0.00 3.18
579 694 3.206150 CCCAATCTATTCCCGTGTGAAG 58.794 50.000 0.00 0.00 0.00 3.02
580 695 3.370527 CCCAATCTATTCCCGTGTGAAGT 60.371 47.826 0.00 0.00 0.00 3.01
581 696 4.261801 CCAATCTATTCCCGTGTGAAGTT 58.738 43.478 0.00 0.00 0.00 2.66
582 697 4.700213 CCAATCTATTCCCGTGTGAAGTTT 59.300 41.667 0.00 0.00 0.00 2.66
583 698 5.163754 CCAATCTATTCCCGTGTGAAGTTTC 60.164 44.000 0.00 0.00 0.00 2.78
584 699 3.581755 TCTATTCCCGTGTGAAGTTTCG 58.418 45.455 0.00 0.00 0.00 3.46
585 700 2.249844 ATTCCCGTGTGAAGTTTCGT 57.750 45.000 0.00 0.00 0.00 3.85
586 701 1.292061 TTCCCGTGTGAAGTTTCGTG 58.708 50.000 0.00 0.00 0.00 4.35
587 702 0.460722 TCCCGTGTGAAGTTTCGTGA 59.539 50.000 0.00 0.00 0.00 4.35
588 703 1.134759 TCCCGTGTGAAGTTTCGTGAA 60.135 47.619 0.00 0.00 0.00 3.18
589 704 1.666700 CCCGTGTGAAGTTTCGTGAAA 59.333 47.619 0.00 0.00 0.00 2.69
590 705 2.096174 CCCGTGTGAAGTTTCGTGAAAA 59.904 45.455 0.00 0.00 31.33 2.29
591 706 3.426426 CCCGTGTGAAGTTTCGTGAAAAA 60.426 43.478 0.00 0.00 31.33 1.94
618 733 9.877178 ATACCAAGAACTGTATTCTCAGTAAAG 57.123 33.333 0.00 0.00 46.25 1.85
619 734 7.963532 ACCAAGAACTGTATTCTCAGTAAAGA 58.036 34.615 0.00 0.00 46.25 2.52
621 736 8.930760 CCAAGAACTGTATTCTCAGTAAAGAAG 58.069 37.037 0.00 0.00 46.25 2.85
681 796 6.699575 AATTTTCATATACAGTGGTGGAGC 57.300 37.500 0.00 0.00 0.00 4.70
684 799 5.372343 TTCATATACAGTGGTGGAGCAAT 57.628 39.130 0.00 0.00 0.00 3.56
685 800 4.960938 TCATATACAGTGGTGGAGCAATC 58.039 43.478 0.00 0.00 0.00 2.67
687 802 3.719268 ATACAGTGGTGGAGCAATCAA 57.281 42.857 0.00 0.00 0.00 2.57
688 803 1.901591 ACAGTGGTGGAGCAATCAAG 58.098 50.000 0.00 0.00 0.00 3.02
689 804 1.143684 ACAGTGGTGGAGCAATCAAGT 59.856 47.619 0.00 0.00 0.00 3.16
690 805 1.538512 CAGTGGTGGAGCAATCAAGTG 59.461 52.381 0.00 0.00 0.00 3.16
699 814 1.959085 CAATCAAGTGCGCCTTGGT 59.041 52.632 27.32 22.10 46.69 3.67
700 815 1.164411 CAATCAAGTGCGCCTTGGTA 58.836 50.000 27.32 16.11 43.88 3.25
701 816 1.745087 CAATCAAGTGCGCCTTGGTAT 59.255 47.619 27.32 17.23 43.88 2.73
702 817 2.164219 CAATCAAGTGCGCCTTGGTATT 59.836 45.455 27.32 20.50 43.88 1.89
703 818 2.825532 AATCAAGTGCGCCTTGGTATTT 59.174 40.909 27.32 17.47 43.88 1.40
705 820 1.135402 CAAGTGCGCCTTGGTATTTCC 60.135 52.381 23.11 0.00 45.70 3.13
706 821 0.679960 AGTGCGCCTTGGTATTTCCC 60.680 55.000 4.18 0.00 34.77 3.97
708 823 0.033601 TGCGCCTTGGTATTTCCCAT 60.034 50.000 4.18 0.00 33.60 4.00
709 824 1.111277 GCGCCTTGGTATTTCCCATT 58.889 50.000 0.00 0.00 33.60 3.16
710 825 1.067060 GCGCCTTGGTATTTCCCATTC 59.933 52.381 0.00 0.00 33.60 2.67
711 826 2.654863 CGCCTTGGTATTTCCCATTCT 58.345 47.619 0.00 0.00 33.60 2.40
712 827 3.815809 CGCCTTGGTATTTCCCATTCTA 58.184 45.455 0.00 0.00 33.60 2.10
714 829 4.686122 CGCCTTGGTATTTCCCATTCTACT 60.686 45.833 0.00 0.00 33.60 2.57
715 830 5.454187 CGCCTTGGTATTTCCCATTCTACTA 60.454 44.000 0.00 0.00 33.60 1.82
716 831 5.998363 GCCTTGGTATTTCCCATTCTACTAG 59.002 44.000 0.00 0.00 33.60 2.57
717 832 6.409349 GCCTTGGTATTTCCCATTCTACTAGT 60.409 42.308 0.00 0.00 33.60 2.57
718 833 6.992715 CCTTGGTATTTCCCATTCTACTAGTG 59.007 42.308 5.39 0.00 33.60 2.74
719 834 7.365652 CCTTGGTATTTCCCATTCTACTAGTGT 60.366 40.741 5.39 0.00 33.60 3.55
722 907 8.044908 TGGTATTTCCCATTCTACTAGTGTTTC 58.955 37.037 5.39 0.00 34.77 2.78
766 951 6.513806 TGATTGTTATAACTGTTGCATGCT 57.486 33.333 20.33 0.00 0.00 3.79
795 1007 4.469657 TCACTAATGTTTTCCACAAGCCT 58.530 39.130 0.00 0.00 39.50 4.58
797 1009 4.984161 CACTAATGTTTTCCACAAGCCTTG 59.016 41.667 2.11 2.11 39.50 3.61
800 1012 4.751767 ATGTTTTCCACAAGCCTTGAAA 57.248 36.364 12.25 0.00 39.50 2.69
804 1016 5.353678 TGTTTTCCACAAGCCTTGAAAAATG 59.646 36.000 12.25 0.00 38.14 2.32
811 1023 4.996758 ACAAGCCTTGAAAAATGCATAACC 59.003 37.500 12.25 0.00 0.00 2.85
815 1027 6.298361 AGCCTTGAAAAATGCATAACCTTTT 58.702 32.000 0.00 2.74 0.00 2.27
830 1042 5.984695 AACCTTTTTGGAGATTAAGGAGC 57.015 39.130 6.72 0.00 39.60 4.70
832 1044 5.583932 ACCTTTTTGGAGATTAAGGAGCAT 58.416 37.500 6.72 0.00 39.60 3.79
889 1101 2.487762 AGAAACATGGGTATGCAACACG 59.512 45.455 0.00 0.00 37.85 4.49
963 1175 4.286032 AGGTACAACAGAACTTCCTATGCA 59.714 41.667 0.00 0.00 0.00 3.96
981 1193 7.715249 TCCTATGCAGATTTCACATTACCTTAC 59.285 37.037 0.00 0.00 0.00 2.34
1029 1241 1.676014 CCAGTCAAGGATGGAACGACC 60.676 57.143 0.00 0.00 39.02 4.79
1112 1324 1.952296 CTTCATATTCACAGGGGCTGC 59.048 52.381 0.00 0.00 34.37 5.25
1179 1391 1.678635 CATTTCCCGCCAGCTTGGA 60.679 57.895 6.40 0.00 40.96 3.53
1196 1408 7.246311 CAGCTTGGAATAGCAATATATTTCCG 58.754 38.462 8.08 0.00 43.68 4.30
1205 1417 6.699575 AGCAATATATTTCCGCTTCTTTGT 57.300 33.333 3.55 0.00 0.00 2.83
1290 1586 9.712305 ATATATAATCTCAAAGAGGGTGTTTCG 57.288 33.333 0.00 0.00 0.00 3.46
1292 1588 2.043992 TCTCAAAGAGGGTGTTTCGGA 58.956 47.619 0.00 0.00 0.00 4.55
1607 1929 2.272447 TGCGATCTGGTGTCGTCCA 61.272 57.895 0.00 0.00 40.98 4.02
1975 2297 1.007038 TCGTGGTGGTGTTCGTAGC 60.007 57.895 0.00 0.00 0.00 3.58
2009 2331 3.645975 CGGCGTTTCTGCGTTGGT 61.646 61.111 0.00 0.00 35.06 3.67
2412 2804 4.606071 GCCACAGCGATCTCTGTT 57.394 55.556 15.61 0.00 44.26 3.16
2431 2824 0.179234 TCTCGGTGTTGGTGCTTTGA 59.821 50.000 0.00 0.00 0.00 2.69
2469 2863 4.022589 GGAAACCCTTTTTCGGTAAAGAGG 60.023 45.833 10.50 5.71 43.47 3.69
2473 2867 3.483421 CCTTTTTCGGTAAAGAGGGTGT 58.517 45.455 10.50 0.00 41.28 4.16
2476 2870 5.503662 TTTTTCGGTAAAGAGGGTGTTTC 57.496 39.130 0.00 0.00 0.00 2.78
2477 2871 3.842007 TTCGGTAAAGAGGGTGTTTCA 57.158 42.857 0.00 0.00 0.00 2.69
2478 2872 3.396260 TCGGTAAAGAGGGTGTTTCAG 57.604 47.619 0.00 0.00 0.00 3.02
2479 2873 2.038033 TCGGTAAAGAGGGTGTTTCAGG 59.962 50.000 0.00 0.00 0.00 3.86
2480 2874 2.791655 GGTAAAGAGGGTGTTTCAGGG 58.208 52.381 0.00 0.00 0.00 4.45
2481 2875 2.554564 GGTAAAGAGGGTGTTTCAGGGG 60.555 54.545 0.00 0.00 0.00 4.79
2482 2876 1.529744 AAAGAGGGTGTTTCAGGGGA 58.470 50.000 0.00 0.00 0.00 4.81
2483 2877 1.529744 AAGAGGGTGTTTCAGGGGAA 58.470 50.000 0.00 0.00 0.00 3.97
2484 2878 1.529744 AGAGGGTGTTTCAGGGGAAA 58.470 50.000 0.00 0.00 40.60 3.13
2485 2879 1.425448 AGAGGGTGTTTCAGGGGAAAG 59.575 52.381 0.00 0.00 43.35 2.62
2486 2880 1.423921 GAGGGTGTTTCAGGGGAAAGA 59.576 52.381 0.00 0.00 43.35 2.52
2487 2881 1.425448 AGGGTGTTTCAGGGGAAAGAG 59.575 52.381 0.00 0.00 43.35 2.85
2488 2882 1.423921 GGGTGTTTCAGGGGAAAGAGA 59.576 52.381 0.00 0.00 43.35 3.10
2489 2883 2.553247 GGGTGTTTCAGGGGAAAGAGAG 60.553 54.545 0.00 0.00 43.35 3.20
2490 2884 2.372172 GGTGTTTCAGGGGAAAGAGAGA 59.628 50.000 0.00 0.00 43.35 3.10
2491 2885 3.181443 GGTGTTTCAGGGGAAAGAGAGAA 60.181 47.826 0.00 0.00 43.35 2.87
2492 2886 4.461198 GTGTTTCAGGGGAAAGAGAGAAA 58.539 43.478 0.00 0.00 43.35 2.52
2505 2899 6.127083 GGAAAGAGAGAAAGTCAGGAGATCAT 60.127 42.308 0.00 0.00 0.00 2.45
2513 2907 6.213195 AGAAAGTCAGGAGATCATCTTTCAGT 59.787 38.462 14.71 0.00 41.42 3.41
2592 3305 6.549364 TCATGACTGGTTTTGTCCTAAATTGT 59.451 34.615 0.00 0.00 33.83 2.71
2593 3306 6.783708 TGACTGGTTTTGTCCTAAATTGTT 57.216 33.333 0.00 0.00 33.83 2.83
2594 3307 6.568869 TGACTGGTTTTGTCCTAAATTGTTG 58.431 36.000 0.00 0.00 33.83 3.33
2595 3308 5.356426 ACTGGTTTTGTCCTAAATTGTTGC 58.644 37.500 0.00 0.00 0.00 4.17
2596 3309 5.128663 ACTGGTTTTGTCCTAAATTGTTGCT 59.871 36.000 0.00 0.00 0.00 3.91
2597 3310 5.596845 TGGTTTTGTCCTAAATTGTTGCTC 58.403 37.500 0.00 0.00 0.00 4.26
2598 3311 5.127845 TGGTTTTGTCCTAAATTGTTGCTCA 59.872 36.000 0.00 0.00 0.00 4.26
2599 3312 5.462068 GGTTTTGTCCTAAATTGTTGCTCAC 59.538 40.000 0.00 0.00 0.00 3.51
2600 3313 6.273071 GTTTTGTCCTAAATTGTTGCTCACT 58.727 36.000 0.00 0.00 0.00 3.41
2601 3314 6.463995 TTTGTCCTAAATTGTTGCTCACTT 57.536 33.333 0.00 0.00 0.00 3.16
2620 3333 7.115947 GCTCACTTTTGGATGAAATCTGAAAAG 59.884 37.037 15.71 15.71 46.47 2.27
2634 3347 5.968528 TCTGAAAAGTAGAGTCAGAGGAC 57.031 43.478 0.00 0.00 42.14 3.85
2649 3362 7.108847 AGTCAGAGGACCATCTTTGATTTTAG 58.891 38.462 0.00 0.00 45.48 1.85
2690 3403 7.739498 TTCTGGGTAGTCTAAATTTTGACAC 57.261 36.000 26.98 21.91 35.77 3.67
2784 3497 8.666129 AAGATGAATAGACGATCCCCTTAATA 57.334 34.615 0.00 0.00 0.00 0.98
2790 3503 8.896722 AATAGACGATCCCCTTAATATACTGT 57.103 34.615 0.00 0.00 0.00 3.55
2792 3505 7.613551 AGACGATCCCCTTAATATACTGTTT 57.386 36.000 0.00 0.00 0.00 2.83
2814 3527 2.793278 ATTCAGCCAAACGGAACAAC 57.207 45.000 0.00 0.00 35.20 3.32
2826 3539 4.422546 ACGGAACAACGTTTCAAGAAAA 57.577 36.364 0.00 0.00 46.25 2.29
2838 3551 6.128007 ACGTTTCAAGAAAACATCAGTTCTGT 60.128 34.615 0.00 0.00 46.33 3.41
2845 3558 6.729187 AGAAAACATCAGTTCTGTAGTTTGC 58.271 36.000 17.85 16.74 36.84 3.68
2870 3583 0.320421 CGTGTTGACGTGAAGGGGAT 60.320 55.000 0.00 0.00 40.91 3.85
2872 3585 2.227194 GTGTTGACGTGAAGGGGATTT 58.773 47.619 0.00 0.00 0.00 2.17
2913 3626 0.511221 CACGTAGGACAAAACCGCAG 59.489 55.000 0.00 0.00 34.73 5.18
2943 3656 6.646636 CACAGTTGGAGTTCGTAGTTTAAAG 58.353 40.000 0.00 0.00 0.00 1.85
2945 3658 6.478016 ACAGTTGGAGTTCGTAGTTTAAAGAC 59.522 38.462 0.00 0.00 0.00 3.01
2969 3683 3.965470 AGTTGGGAGGGTTGTAACTTT 57.035 42.857 0.00 0.00 0.00 2.66
2973 3687 4.103013 TGGGAGGGTTGTAACTTTAACC 57.897 45.455 0.00 0.00 44.38 2.85
2984 3698 8.074370 GGTTGTAACTTTAACCTCATCAAGAAC 58.926 37.037 0.00 0.00 42.37 3.01
2994 3708 1.556911 TCATCAAGAACTGAGGGAGGC 59.443 52.381 0.00 0.00 37.52 4.70
2996 3710 0.979665 TCAAGAACTGAGGGAGGCAG 59.020 55.000 0.00 0.00 39.26 4.85
3028 3742 9.041354 ACTTCTCTCTGTTAGGAAATTCATACT 57.959 33.333 0.00 0.00 0.00 2.12
3031 3745 8.470805 TCTCTCTGTTAGGAAATTCATACTGAC 58.529 37.037 0.00 0.00 0.00 3.51
3035 3749 9.219603 TCTGTTAGGAAATTCATACTGACAAAG 57.780 33.333 0.00 0.00 30.61 2.77
3050 3764 7.873739 ACTGACAAAGTTCTTGTTTCAAAAG 57.126 32.000 0.00 0.00 34.57 2.27
3053 3767 8.879342 TGACAAAGTTCTTGTTTCAAAAGAAA 57.121 26.923 0.46 0.00 43.37 2.52
3054 3768 9.319143 TGACAAAGTTCTTGTTTCAAAAGAAAA 57.681 25.926 0.46 0.00 43.37 2.29
3108 3822 7.806180 AGCAGGAATCAGTACATAATTAGGTT 58.194 34.615 8.23 0.00 0.00 3.50
3131 3846 7.115378 GGTTATATATTTTCGTGTCCTGTACCG 59.885 40.741 0.00 0.00 0.00 4.02
3133 3848 1.039068 TTTTCGTGTCCTGTACCGGA 58.961 50.000 9.46 1.23 0.00 5.14
3137 3852 0.316204 CGTGTCCTGTACCGGAAGTT 59.684 55.000 9.46 0.00 34.20 2.66
3143 3858 2.298163 TCCTGTACCGGAAGTTCAGAAC 59.702 50.000 9.46 5.00 44.38 3.01
3144 3859 2.299297 CCTGTACCGGAAGTTCAGAACT 59.701 50.000 9.46 10.27 44.38 3.01
3151 3866 2.221981 CGGAAGTTCAGAACTGCAGAAC 59.778 50.000 23.35 14.08 41.91 3.01
3152 3867 3.206150 GGAAGTTCAGAACTGCAGAACA 58.794 45.455 23.35 0.00 43.25 3.18
3177 3892 2.826337 ACAGCTGTGACAGACTGGA 58.174 52.632 27.79 0.00 38.73 3.86
3179 3894 0.037512 CAGCTGTGACAGACTGGAGG 60.038 60.000 18.18 0.00 34.49 4.30
3202 3918 4.624125 GCTTTGGTCTATAGCCTCACAGTT 60.624 45.833 12.54 0.00 0.00 3.16
3209 3925 0.898320 TAGCCTCACAGTTCCAGAGC 59.102 55.000 0.00 0.00 0.00 4.09
3233 3950 4.194678 TGATCCAGGTAGTTAGGGTAGG 57.805 50.000 0.00 0.00 0.00 3.18
3282 4004 1.073098 GGGGTCAGGAGGGAAGAAAA 58.927 55.000 0.00 0.00 0.00 2.29
3283 4005 1.641192 GGGGTCAGGAGGGAAGAAAAT 59.359 52.381 0.00 0.00 0.00 1.82
3284 4006 2.850568 GGGGTCAGGAGGGAAGAAAATA 59.149 50.000 0.00 0.00 0.00 1.40
3286 4008 3.532542 GGTCAGGAGGGAAGAAAATACG 58.467 50.000 0.00 0.00 0.00 3.06
3287 4009 3.197116 GGTCAGGAGGGAAGAAAATACGA 59.803 47.826 0.00 0.00 0.00 3.43
3289 4011 4.159879 GTCAGGAGGGAAGAAAATACGAGA 59.840 45.833 0.00 0.00 0.00 4.04
3290 4012 4.402793 TCAGGAGGGAAGAAAATACGAGAG 59.597 45.833 0.00 0.00 0.00 3.20
3292 4014 4.647399 AGGAGGGAAGAAAATACGAGAGAG 59.353 45.833 0.00 0.00 0.00 3.20
3293 4015 4.645588 GGAGGGAAGAAAATACGAGAGAGA 59.354 45.833 0.00 0.00 0.00 3.10
3294 4016 5.221165 GGAGGGAAGAAAATACGAGAGAGAG 60.221 48.000 0.00 0.00 0.00 3.20
3296 4018 5.592688 AGGGAAGAAAATACGAGAGAGAGAG 59.407 44.000 0.00 0.00 0.00 3.20
3311 4044 8.335356 CGAGAGAGAGAGAGATTAGTAACTTTG 58.665 40.741 0.00 0.00 0.00 2.77
3312 4045 9.174166 GAGAGAGAGAGAGATTAGTAACTTTGT 57.826 37.037 0.00 0.00 0.00 2.83
3339 4273 9.031360 GTTCATACATTATATATGTACCTGGCG 57.969 37.037 0.00 0.00 37.33 5.69
3347 4281 0.680921 ATGTACCTGGCGCTGCAAAT 60.681 50.000 7.64 0.00 0.00 2.32
3425 4367 9.787532 CCTAATTGGTTTGTGTTACTAATGATG 57.212 33.333 0.00 0.00 28.77 3.07
3455 4397 5.118664 CCTAGTGTTGTGTGAAATGTACTCG 59.881 44.000 0.00 0.00 0.00 4.18
3460 4402 7.439955 AGTGTTGTGTGAAATGTACTCGATTTA 59.560 33.333 0.00 0.00 0.00 1.40
3539 4487 8.408043 AGAATCAATTCAGTATTTGTGTTCCA 57.592 30.769 5.59 0.00 39.23 3.53
3558 4506 7.750903 GTGTTCCATTTAAAGTTGCTGATAGAC 59.249 37.037 0.00 0.00 0.00 2.59
3566 4515 3.740115 AGTTGCTGATAGACGGTTGTTT 58.260 40.909 0.00 0.00 0.00 2.83
3685 4634 7.069085 ACAGCCAATTTATCATCAATGCTTACT 59.931 33.333 0.00 0.00 0.00 2.24
3691 4640 6.756299 TTATCATCAATGCTTACTGTGCAA 57.244 33.333 0.00 0.00 44.01 4.08
3737 4686 7.405292 TGATGTCCATGAACTCCTTAAGAAAT 58.595 34.615 3.36 0.00 0.00 2.17
3739 4688 5.945784 TGTCCATGAACTCCTTAAGAAATGG 59.054 40.000 3.36 7.66 35.70 3.16
3756 4705 7.460214 AGAAATGGGAATATGTAGGGTACAA 57.540 36.000 0.00 0.00 42.76 2.41
3768 4717 5.390387 TGTAGGGTACAAAAATGGCTCTTT 58.610 37.500 0.00 0.00 35.38 2.52
3855 4807 4.331992 AGACGATTTTGATGATGCACTCTG 59.668 41.667 0.00 0.00 0.00 3.35
4037 4992 7.165485 TGCACATTACATACCTCTAAAGTGTT 58.835 34.615 0.00 0.00 0.00 3.32
4181 5168 6.374333 TGCTAAGACCCAAGATGATAACAAAC 59.626 38.462 0.00 0.00 0.00 2.93
4190 5204 6.377996 CCAAGATGATAACAAACCAATGGAGA 59.622 38.462 6.16 0.00 0.00 3.71
4201 5215 6.666546 ACAAACCAATGGAGATCATCATTCTT 59.333 34.615 6.16 3.88 34.44 2.52
4202 5216 7.835682 ACAAACCAATGGAGATCATCATTCTTA 59.164 33.333 6.16 0.00 34.44 2.10
4203 5217 8.857098 CAAACCAATGGAGATCATCATTCTTAT 58.143 33.333 6.16 0.00 34.44 1.73
4204 5218 9.430399 AAACCAATGGAGATCATCATTCTTATT 57.570 29.630 6.16 3.11 34.44 1.40
4205 5219 9.430399 AACCAATGGAGATCATCATTCTTATTT 57.570 29.630 6.16 0.00 34.44 1.40
4206 5220 9.075678 ACCAATGGAGATCATCATTCTTATTTC 57.924 33.333 6.16 0.00 34.44 2.17
4285 5339 1.732259 CCAGTGATGTAAGGTTCACGC 59.268 52.381 0.00 0.00 45.42 5.34
4346 5400 4.142816 ACGAGAAGCATATGCAGTGAAAAC 60.143 41.667 28.62 10.57 45.16 2.43
4402 5456 5.004448 TGACCAAAGACGCCAAATTACATA 58.996 37.500 0.00 0.00 0.00 2.29
4423 5477 4.882671 ACACAAAGAAATATAGGCAGCG 57.117 40.909 0.00 0.00 0.00 5.18
4462 5516 3.238108 AGTATCAGGTTGACAGCTTCG 57.762 47.619 0.00 0.00 0.00 3.79
4488 5542 6.053005 TCGACCAAAACTTGAAACTACATCT 58.947 36.000 0.00 0.00 0.00 2.90
4489 5543 6.540914 TCGACCAAAACTTGAAACTACATCTT 59.459 34.615 0.00 0.00 0.00 2.40
4490 5544 6.632834 CGACCAAAACTTGAAACTACATCTTG 59.367 38.462 0.00 0.00 0.00 3.02
4506 5560 7.922811 ACTACATCTTGCTCAAAAAGAAAAAGG 59.077 33.333 0.00 0.00 37.22 3.11
4530 5789 2.082231 CACTTCAATCCAGAGGCACTG 58.918 52.381 4.83 4.83 41.55 3.66
4542 5801 0.746659 AGGCACTGGTTTGCAGAAAC 59.253 50.000 0.00 0.00 44.94 2.78
4560 5819 7.609918 TGCAGAAACTGTAAATATGTACCATGT 59.390 33.333 0.43 0.00 33.43 3.21
4573 5832 8.995027 ATATGTACCATGTTATTTGTGTCCAT 57.005 30.769 0.00 0.00 0.00 3.41
4580 5839 7.040340 ACCATGTTATTTGTGTCCATTTTCGTA 60.040 33.333 0.00 0.00 0.00 3.43
4662 6008 0.849094 TGGGTAGGCATTCCCCAAGT 60.849 55.000 10.83 0.00 45.38 3.16
4729 6075 9.253832 CATAACAGAGGGAGATACTATCATTCT 57.746 37.037 0.00 0.00 0.00 2.40
4829 6175 7.539436 ACTTCAAAAACTTTTCAGGACTCTTC 58.461 34.615 0.00 0.00 0.00 2.87
4871 6217 3.728385 ACTTCTGCCCTTTTGATAGCT 57.272 42.857 0.00 0.00 0.00 3.32
4912 6258 7.259088 ACAAGAGGTACAAGATAAGGAACAT 57.741 36.000 0.00 0.00 0.00 2.71
4917 6263 7.126421 AGAGGTACAAGATAAGGAACATCACAT 59.874 37.037 0.00 0.00 0.00 3.21
4956 6302 1.553248 CAGATTCTAACCCGTCCCACA 59.447 52.381 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 7.283127 ACCTCTTCAAATACGTCAATTGCATAT 59.717 33.333 0.00 0.00 0.00 1.78
55 56 8.616076 GCTACATATTCATAAGGGATTGCATAC 58.384 37.037 0.00 0.00 0.00 2.39
91 92 1.614051 CCATGGCTTACTCCTTGTGCA 60.614 52.381 0.00 0.00 31.44 4.57
93 94 1.281867 TCCCATGGCTTACTCCTTGTG 59.718 52.381 6.09 0.00 31.44 3.33
184 186 6.954944 TGCCTATTTCTGCAATAACGTTATC 58.045 36.000 20.57 10.22 33.87 1.75
188 190 4.498009 GCATGCCTATTTCTGCAATAACGT 60.498 41.667 6.36 0.00 41.50 3.99
204 206 2.686915 GTGCAATAAAGAGAGCATGCCT 59.313 45.455 15.66 11.42 39.43 4.75
321 353 7.199766 TGCCTACAAAAGACAAAATAAGTGTG 58.800 34.615 0.00 0.00 0.00 3.82
327 359 6.380095 ACGTTGCCTACAAAAGACAAAATA 57.620 33.333 0.00 0.00 37.58 1.40
328 360 5.257082 ACGTTGCCTACAAAAGACAAAAT 57.743 34.783 0.00 0.00 37.58 1.82
333 365 4.039703 GGAAAACGTTGCCTACAAAAGAC 58.960 43.478 0.00 0.00 37.58 3.01
335 367 3.794564 GTGGAAAACGTTGCCTACAAAAG 59.205 43.478 18.04 0.00 37.58 2.27
340 372 3.396560 ACTAGTGGAAAACGTTGCCTAC 58.603 45.455 18.04 13.11 0.00 3.18
342 374 2.632987 ACTAGTGGAAAACGTTGCCT 57.367 45.000 18.04 6.40 0.00 4.75
412 527 5.358160 GCCTTATTTTCTGACATAGTTGGCT 59.642 40.000 0.00 0.00 0.00 4.75
430 545 6.187727 TCCTCTTCCGAAATAATGCCTTAT 57.812 37.500 0.00 0.00 0.00 1.73
441 556 2.039746 TGCTCCAAATCCTCTTCCGAAA 59.960 45.455 0.00 0.00 0.00 3.46
444 559 1.373570 GTGCTCCAAATCCTCTTCCG 58.626 55.000 0.00 0.00 0.00 4.30
445 560 1.283321 AGGTGCTCCAAATCCTCTTCC 59.717 52.381 7.70 0.00 35.89 3.46
446 561 2.363683 CAGGTGCTCCAAATCCTCTTC 58.636 52.381 7.70 0.00 35.89 2.87
447 562 1.005215 CCAGGTGCTCCAAATCCTCTT 59.995 52.381 7.70 0.00 35.89 2.85
448 563 0.622665 CCAGGTGCTCCAAATCCTCT 59.377 55.000 7.70 0.00 35.89 3.69
449 564 0.394899 CCCAGGTGCTCCAAATCCTC 60.395 60.000 7.70 0.00 35.89 3.71
450 565 1.142688 ACCCAGGTGCTCCAAATCCT 61.143 55.000 7.70 0.00 35.89 3.24
451 566 0.967380 CACCCAGGTGCTCCAAATCC 60.967 60.000 7.70 0.00 39.39 3.01
453 568 4.850193 CACCCAGGTGCTCCAAAT 57.150 55.556 7.70 0.00 39.39 2.32
524 639 4.657969 TGACATCCCAAAATCCCAGTTTTT 59.342 37.500 0.00 0.00 0.00 1.94
525 640 4.230455 TGACATCCCAAAATCCCAGTTTT 58.770 39.130 0.00 0.00 0.00 2.43
526 641 3.855668 TGACATCCCAAAATCCCAGTTT 58.144 40.909 0.00 0.00 0.00 2.66
527 642 3.541242 TGACATCCCAAAATCCCAGTT 57.459 42.857 0.00 0.00 0.00 3.16
528 643 3.541242 TTGACATCCCAAAATCCCAGT 57.459 42.857 0.00 0.00 0.00 4.00
529 644 3.055891 GGTTTGACATCCCAAAATCCCAG 60.056 47.826 0.00 0.00 37.72 4.45
530 645 2.903135 GGTTTGACATCCCAAAATCCCA 59.097 45.455 0.00 0.00 37.72 4.37
531 646 3.055891 CAGGTTTGACATCCCAAAATCCC 60.056 47.826 0.00 0.00 37.72 3.85
532 647 3.055891 CCAGGTTTGACATCCCAAAATCC 60.056 47.826 0.00 0.00 37.72 3.01
533 648 3.055891 CCCAGGTTTGACATCCCAAAATC 60.056 47.826 0.00 0.00 37.72 2.17
534 649 2.905736 CCCAGGTTTGACATCCCAAAAT 59.094 45.455 0.00 0.00 37.72 1.82
535 650 2.324541 CCCAGGTTTGACATCCCAAAA 58.675 47.619 0.00 0.00 37.72 2.44
536 651 1.219213 ACCCAGGTTTGACATCCCAAA 59.781 47.619 0.00 0.00 34.03 3.28
537 652 0.856982 ACCCAGGTTTGACATCCCAA 59.143 50.000 0.00 0.00 0.00 4.12
538 653 0.112218 CACCCAGGTTTGACATCCCA 59.888 55.000 0.00 0.00 0.00 4.37
539 654 1.250840 GCACCCAGGTTTGACATCCC 61.251 60.000 0.00 0.00 0.00 3.85
540 655 1.250840 GGCACCCAGGTTTGACATCC 61.251 60.000 0.00 0.00 0.00 3.51
541 656 2.267045 GGCACCCAGGTTTGACATC 58.733 57.895 0.00 0.00 0.00 3.06
542 657 4.519610 GGCACCCAGGTTTGACAT 57.480 55.556 0.00 0.00 0.00 3.06
555 670 1.308998 CACGGGAATAGATTGGGCAC 58.691 55.000 0.00 0.00 0.00 5.01
556 671 0.916086 ACACGGGAATAGATTGGGCA 59.084 50.000 0.00 0.00 0.00 5.36
557 672 1.134220 TCACACGGGAATAGATTGGGC 60.134 52.381 0.00 0.00 0.00 5.36
558 673 3.206150 CTTCACACGGGAATAGATTGGG 58.794 50.000 0.00 0.00 0.00 4.12
559 674 3.873910 ACTTCACACGGGAATAGATTGG 58.126 45.455 0.00 0.00 0.00 3.16
560 675 5.445939 CGAAACTTCACACGGGAATAGATTG 60.446 44.000 0.00 0.00 0.00 2.67
561 676 4.630069 CGAAACTTCACACGGGAATAGATT 59.370 41.667 0.00 0.00 0.00 2.40
562 677 4.181578 CGAAACTTCACACGGGAATAGAT 58.818 43.478 0.00 0.00 0.00 1.98
563 678 3.006110 ACGAAACTTCACACGGGAATAGA 59.994 43.478 0.00 0.00 0.00 1.98
564 679 3.122948 CACGAAACTTCACACGGGAATAG 59.877 47.826 0.00 0.00 0.00 1.73
565 680 3.061322 CACGAAACTTCACACGGGAATA 58.939 45.455 0.00 0.00 0.00 1.75
566 681 1.871039 CACGAAACTTCACACGGGAAT 59.129 47.619 0.00 0.00 0.00 3.01
567 682 1.134759 TCACGAAACTTCACACGGGAA 60.135 47.619 0.00 0.00 35.29 3.97
568 683 0.460722 TCACGAAACTTCACACGGGA 59.539 50.000 0.00 0.00 35.84 5.14
569 684 1.292061 TTCACGAAACTTCACACGGG 58.708 50.000 0.00 0.00 0.00 5.28
570 685 3.392769 TTTTCACGAAACTTCACACGG 57.607 42.857 0.00 0.00 0.00 4.94
657 772 6.663093 TGCTCCACCACTGTATATGAAAATTT 59.337 34.615 0.00 0.00 0.00 1.82
659 774 5.754782 TGCTCCACCACTGTATATGAAAAT 58.245 37.500 0.00 0.00 0.00 1.82
661 776 4.835284 TGCTCCACCACTGTATATGAAA 57.165 40.909 0.00 0.00 0.00 2.69
662 777 4.835284 TTGCTCCACCACTGTATATGAA 57.165 40.909 0.00 0.00 0.00 2.57
663 778 4.408596 TGATTGCTCCACCACTGTATATGA 59.591 41.667 0.00 0.00 0.00 2.15
664 779 4.707105 TGATTGCTCCACCACTGTATATG 58.293 43.478 0.00 0.00 0.00 1.78
665 780 5.104360 ACTTGATTGCTCCACCACTGTATAT 60.104 40.000 0.00 0.00 0.00 0.86
669 784 1.143684 ACTTGATTGCTCCACCACTGT 59.856 47.619 0.00 0.00 0.00 3.55
670 785 1.538512 CACTTGATTGCTCCACCACTG 59.461 52.381 0.00 0.00 0.00 3.66
671 786 1.901591 CACTTGATTGCTCCACCACT 58.098 50.000 0.00 0.00 0.00 4.00
672 787 0.242017 GCACTTGATTGCTCCACCAC 59.758 55.000 0.00 0.00 39.59 4.16
673 788 1.236616 CGCACTTGATTGCTCCACCA 61.237 55.000 0.00 0.00 40.62 4.17
674 789 1.503542 CGCACTTGATTGCTCCACC 59.496 57.895 0.00 0.00 40.62 4.61
675 790 1.154150 GCGCACTTGATTGCTCCAC 60.154 57.895 0.30 0.00 40.62 4.02
676 791 2.334946 GGCGCACTTGATTGCTCCA 61.335 57.895 10.83 0.00 45.23 3.86
677 792 1.589716 AAGGCGCACTTGATTGCTCC 61.590 55.000 10.83 0.00 46.09 4.70
678 793 1.878775 AAGGCGCACTTGATTGCTC 59.121 52.632 10.83 0.00 40.62 4.26
679 794 4.085876 AAGGCGCACTTGATTGCT 57.914 50.000 10.83 0.00 40.62 3.91
687 802 0.679960 GGGAAATACCAAGGCGCACT 60.680 55.000 10.83 0.02 41.20 4.40
688 803 0.963355 TGGGAAATACCAAGGCGCAC 60.963 55.000 10.83 0.00 41.20 5.34
689 804 0.033601 ATGGGAAATACCAAGGCGCA 60.034 50.000 10.83 0.00 45.13 6.09
690 805 1.067060 GAATGGGAAATACCAAGGCGC 59.933 52.381 0.00 0.00 45.13 6.53
692 807 4.793201 AGTAGAATGGGAAATACCAAGGC 58.207 43.478 0.00 0.00 45.13 4.35
693 808 6.992715 CACTAGTAGAATGGGAAATACCAAGG 59.007 42.308 3.59 0.00 45.13 3.61
694 809 7.565680 ACACTAGTAGAATGGGAAATACCAAG 58.434 38.462 3.59 0.00 45.13 3.61
695 810 7.504926 ACACTAGTAGAATGGGAAATACCAA 57.495 36.000 3.59 0.00 45.13 3.67
698 813 9.668497 AAGAAACACTAGTAGAATGGGAAATAC 57.332 33.333 3.59 0.00 0.00 1.89
699 814 9.886132 GAAGAAACACTAGTAGAATGGGAAATA 57.114 33.333 3.59 0.00 0.00 1.40
700 815 8.606830 AGAAGAAACACTAGTAGAATGGGAAAT 58.393 33.333 3.59 0.00 0.00 2.17
701 816 7.974504 AGAAGAAACACTAGTAGAATGGGAAA 58.025 34.615 3.59 0.00 0.00 3.13
702 817 7.554959 AGAAGAAACACTAGTAGAATGGGAA 57.445 36.000 3.59 0.00 0.00 3.97
703 818 8.660295 TTAGAAGAAACACTAGTAGAATGGGA 57.340 34.615 3.59 0.00 0.00 4.37
766 951 5.126222 TGTGGAAAACATTAGTGAACAGCAA 59.874 36.000 0.00 0.00 32.36 3.91
775 987 4.892934 TCAAGGCTTGTGGAAAACATTAGT 59.107 37.500 25.39 0.00 38.99 2.24
795 1007 7.989741 TCTCCAAAAAGGTTATGCATTTTTCAA 59.010 29.630 3.54 0.00 44.55 2.69
797 1009 7.961325 TCTCCAAAAAGGTTATGCATTTTTC 57.039 32.000 3.54 0.00 44.55 2.29
800 1012 9.657419 CTTAATCTCCAAAAAGGTTATGCATTT 57.343 29.630 3.54 0.00 39.02 2.32
804 1016 7.404671 TCCTTAATCTCCAAAAAGGTTATGC 57.595 36.000 0.00 0.00 39.62 3.14
815 1027 8.497910 ACTCTATAATGCTCCTTAATCTCCAA 57.502 34.615 0.00 0.00 0.00 3.53
859 1071 6.099341 GCATACCCATGTTTCTTTAAACCAG 58.901 40.000 0.00 0.00 43.66 4.00
861 1073 6.031751 TGCATACCCATGTTTCTTTAAACC 57.968 37.500 0.00 0.00 43.66 3.27
889 1101 2.029649 ACACCTGCAAGCATGTCATTTC 60.030 45.455 0.00 0.00 26.77 2.17
963 1175 9.167311 GATTCAGTGTAAGGTAATGTGAAATCT 57.833 33.333 0.00 0.00 0.00 2.40
981 1193 4.711399 TCATTGCTATCCCAGATTCAGTG 58.289 43.478 0.00 0.00 0.00 3.66
1029 1241 6.017275 GCTTCAAGAAGATCCATGTATCCTTG 60.017 42.308 13.70 9.54 40.79 3.61
1044 1256 4.456911 TCAGCAGTTAATGGCTTCAAGAAG 59.543 41.667 5.46 5.46 38.56 2.85
1179 1391 8.850156 ACAAAGAAGCGGAAATATATTGCTATT 58.150 29.630 8.69 5.49 34.19 1.73
1196 1408 6.365247 TCGTCACTTACTATCAACAAAGAAGC 59.635 38.462 0.00 0.00 0.00 3.86
1205 1417 7.160547 TGGTAACATCGTCACTTACTATCAA 57.839 36.000 0.00 0.00 46.17 2.57
1272 1568 2.043992 TCCGAAACACCCTCTTTGAGA 58.956 47.619 0.00 0.00 0.00 3.27
1589 1911 2.272447 TGGACGACACCAGATCGCA 61.272 57.895 0.00 0.00 43.46 5.10
2412 2804 0.179234 TCAAAGCACCAACACCGAGA 59.821 50.000 0.00 0.00 0.00 4.04
2466 2860 1.423921 TCTTTCCCCTGAAACACCCTC 59.576 52.381 0.00 0.00 35.58 4.30
2467 2861 1.425448 CTCTTTCCCCTGAAACACCCT 59.575 52.381 0.00 0.00 35.58 4.34
2469 2863 2.372172 TCTCTCTTTCCCCTGAAACACC 59.628 50.000 0.00 0.00 35.58 4.16
2471 2865 4.166144 ACTTTCTCTCTTTCCCCTGAAACA 59.834 41.667 0.00 0.00 35.58 2.83
2472 2866 4.720046 ACTTTCTCTCTTTCCCCTGAAAC 58.280 43.478 0.00 0.00 35.58 2.78
2473 2867 4.412199 TGACTTTCTCTCTTTCCCCTGAAA 59.588 41.667 0.00 0.00 38.14 2.69
2476 2870 3.307339 CCTGACTTTCTCTCTTTCCCCTG 60.307 52.174 0.00 0.00 0.00 4.45
2477 2871 2.909662 CCTGACTTTCTCTCTTTCCCCT 59.090 50.000 0.00 0.00 0.00 4.79
2478 2872 2.907042 TCCTGACTTTCTCTCTTTCCCC 59.093 50.000 0.00 0.00 0.00 4.81
2479 2873 3.835395 TCTCCTGACTTTCTCTCTTTCCC 59.165 47.826 0.00 0.00 0.00 3.97
2480 2874 5.186797 TGATCTCCTGACTTTCTCTCTTTCC 59.813 44.000 0.00 0.00 0.00 3.13
2481 2875 6.279513 TGATCTCCTGACTTTCTCTCTTTC 57.720 41.667 0.00 0.00 0.00 2.62
2482 2876 6.669154 AGATGATCTCCTGACTTTCTCTCTTT 59.331 38.462 0.00 0.00 0.00 2.52
2483 2877 6.197168 AGATGATCTCCTGACTTTCTCTCTT 58.803 40.000 0.00 0.00 0.00 2.85
2484 2878 5.769835 AGATGATCTCCTGACTTTCTCTCT 58.230 41.667 0.00 0.00 0.00 3.10
2485 2879 6.469782 AAGATGATCTCCTGACTTTCTCTC 57.530 41.667 0.00 0.00 0.00 3.20
2486 2880 6.440010 TGAAAGATGATCTCCTGACTTTCTCT 59.560 38.462 2.24 0.00 41.70 3.10
2487 2881 6.638610 TGAAAGATGATCTCCTGACTTTCTC 58.361 40.000 2.24 0.00 41.70 2.87
2488 2882 6.213195 ACTGAAAGATGATCTCCTGACTTTCT 59.787 38.462 2.24 0.00 41.70 2.52
2489 2883 6.405538 ACTGAAAGATGATCTCCTGACTTTC 58.594 40.000 0.00 0.00 41.60 2.62
2490 2884 6.371595 ACTGAAAGATGATCTCCTGACTTT 57.628 37.500 0.00 0.00 37.43 2.66
2491 2885 6.371595 AACTGAAAGATGATCTCCTGACTT 57.628 37.500 0.00 0.00 37.43 3.01
2492 2886 6.371595 AAACTGAAAGATGATCTCCTGACT 57.628 37.500 0.00 0.00 37.43 3.41
2560 2955 6.070824 AGGACAAAACCAGTCATGAAGTTTTT 60.071 34.615 21.13 11.93 39.68 1.94
2561 2956 5.422012 AGGACAAAACCAGTCATGAAGTTTT 59.578 36.000 19.27 19.27 41.73 2.43
2562 2957 4.956075 AGGACAAAACCAGTCATGAAGTTT 59.044 37.500 11.88 11.88 37.74 2.66
2570 2965 6.568869 CAACAATTTAGGACAAAACCAGTCA 58.431 36.000 0.00 0.00 37.74 3.41
2571 2966 5.462068 GCAACAATTTAGGACAAAACCAGTC 59.538 40.000 0.00 0.00 35.29 3.51
2575 3288 5.462068 GTGAGCAACAATTTAGGACAAAACC 59.538 40.000 0.00 0.00 0.00 3.27
2581 3294 5.691754 CCAAAAGTGAGCAACAATTTAGGAC 59.308 40.000 9.06 0.00 44.24 3.85
2592 3305 5.535783 TCAGATTTCATCCAAAAGTGAGCAA 59.464 36.000 0.00 0.00 0.00 3.91
2593 3306 5.072055 TCAGATTTCATCCAAAAGTGAGCA 58.928 37.500 0.00 0.00 0.00 4.26
2594 3307 5.633830 TCAGATTTCATCCAAAAGTGAGC 57.366 39.130 0.00 0.00 0.00 4.26
2595 3308 8.139989 ACTTTTCAGATTTCATCCAAAAGTGAG 58.860 33.333 16.36 2.67 43.78 3.51
2596 3309 8.010733 ACTTTTCAGATTTCATCCAAAAGTGA 57.989 30.769 16.36 0.00 43.78 3.41
2597 3310 9.403110 CTACTTTTCAGATTTCATCCAAAAGTG 57.597 33.333 21.34 13.69 44.40 3.16
2598 3311 9.354673 TCTACTTTTCAGATTTCATCCAAAAGT 57.645 29.630 18.88 18.88 45.42 2.66
2599 3312 9.837525 CTCTACTTTTCAGATTTCATCCAAAAG 57.162 33.333 12.72 12.72 41.22 2.27
2600 3313 9.354673 ACTCTACTTTTCAGATTTCATCCAAAA 57.645 29.630 0.00 0.00 0.00 2.44
2601 3314 8.924511 ACTCTACTTTTCAGATTTCATCCAAA 57.075 30.769 0.00 0.00 0.00 3.28
2620 3333 4.707448 TCAAAGATGGTCCTCTGACTCTAC 59.293 45.833 0.00 0.00 41.47 2.59
2677 3390 9.033481 TGCTTCAAATCTTGTGTCAAAATTTAG 57.967 29.630 0.00 0.00 0.00 1.85
2678 3391 8.939201 TGCTTCAAATCTTGTGTCAAAATTTA 57.061 26.923 0.00 0.00 0.00 1.40
2717 3430 6.135290 TCACATTTTTCTGGACAGTTTGAG 57.865 37.500 0.00 0.00 0.00 3.02
2757 3470 6.996180 AAGGGGATCGTCTATTCATCTTTA 57.004 37.500 0.00 0.00 0.00 1.85
2766 3479 8.896722 AACAGTATATTAAGGGGATCGTCTAT 57.103 34.615 0.00 0.00 0.00 1.98
2767 3480 8.716674 AAACAGTATATTAAGGGGATCGTCTA 57.283 34.615 0.00 0.00 0.00 2.59
2768 3481 7.613551 AAACAGTATATTAAGGGGATCGTCT 57.386 36.000 0.00 0.00 0.00 4.18
2769 3482 9.768662 TTTAAACAGTATATTAAGGGGATCGTC 57.231 33.333 0.00 0.00 0.00 4.20
2784 3497 6.207810 TCCGTTTGGCTGAATTTAAACAGTAT 59.792 34.615 7.44 0.00 36.62 2.12
2790 3503 5.263968 TGTTCCGTTTGGCTGAATTTAAA 57.736 34.783 0.00 0.00 34.14 1.52
2792 3505 4.612943 GTTGTTCCGTTTGGCTGAATTTA 58.387 39.130 0.00 0.00 34.14 1.40
2806 3519 4.731915 GTTTTCTTGAAACGTTGTTCCG 57.268 40.909 0.00 0.00 38.38 4.30
2816 3529 8.506168 ACTACAGAACTGATGTTTTCTTGAAA 57.494 30.769 8.87 0.00 36.39 2.69
2819 3532 7.166473 GCAAACTACAGAACTGATGTTTTCTTG 59.834 37.037 18.22 13.03 37.39 3.02
2821 3534 6.543831 AGCAAACTACAGAACTGATGTTTTCT 59.456 34.615 18.22 16.88 37.39 2.52
2826 3539 4.512944 CACAGCAAACTACAGAACTGATGT 59.487 41.667 8.87 4.17 37.12 3.06
2838 3551 2.605818 GTCAACACGACACAGCAAACTA 59.394 45.455 0.00 0.00 44.69 2.24
2863 3576 5.254032 ACCTCAACTTCTATCAAATCCCCTT 59.746 40.000 0.00 0.00 0.00 3.95
2870 3583 4.041567 TCTGCCACCTCAACTTCTATCAAA 59.958 41.667 0.00 0.00 0.00 2.69
2872 3585 3.055819 GTCTGCCACCTCAACTTCTATCA 60.056 47.826 0.00 0.00 0.00 2.15
2932 3645 5.987347 TCCCAACTTCTGTCTTTAAACTACG 59.013 40.000 0.00 0.00 0.00 3.51
2934 3647 6.465321 CCCTCCCAACTTCTGTCTTTAAACTA 60.465 42.308 0.00 0.00 0.00 2.24
2936 3649 4.519350 CCCTCCCAACTTCTGTCTTTAAAC 59.481 45.833 0.00 0.00 0.00 2.01
2943 3656 1.143073 ACAACCCTCCCAACTTCTGTC 59.857 52.381 0.00 0.00 0.00 3.51
2945 3658 3.146847 GTTACAACCCTCCCAACTTCTG 58.853 50.000 0.00 0.00 0.00 3.02
2973 3687 2.419851 GCCTCCCTCAGTTCTTGATGAG 60.420 54.545 0.00 0.00 42.14 2.90
2984 3698 2.268280 CTGCACTGCCTCCCTCAG 59.732 66.667 0.00 0.00 37.56 3.35
2994 3708 3.383620 AACAGAGAGAAGTCTGCACTG 57.616 47.619 0.73 0.00 46.90 3.66
2996 3710 3.508012 TCCTAACAGAGAGAAGTCTGCAC 59.492 47.826 0.73 0.00 46.90 4.57
3028 3742 8.879342 TTTCTTTTGAAACAAGAACTTTGTCA 57.121 26.923 0.00 0.00 42.84 3.58
3108 3822 6.489700 TCCGGTACAGGACACGAAAATATATA 59.510 38.462 11.03 0.00 34.92 0.86
3112 3826 2.824936 TCCGGTACAGGACACGAAAATA 59.175 45.455 11.03 0.00 34.92 1.40
3119 3834 1.342174 TGAACTTCCGGTACAGGACAC 59.658 52.381 14.85 7.05 40.56 3.67
3131 3846 3.887339 GTTCTGCAGTTCTGAACTTCC 57.113 47.619 19.89 14.06 44.96 3.46
3137 3852 2.736721 GCGTTATGTTCTGCAGTTCTGA 59.263 45.455 14.67 0.00 0.00 3.27
3143 3858 1.464687 GCTGTGCGTTATGTTCTGCAG 60.465 52.381 7.63 7.63 38.14 4.41
3144 3859 0.516877 GCTGTGCGTTATGTTCTGCA 59.483 50.000 0.00 0.00 34.44 4.41
3151 3866 1.127397 CTGTCACAGCTGTGCGTTATG 59.873 52.381 36.76 20.36 45.25 1.90
3152 3867 1.000843 TCTGTCACAGCTGTGCGTTAT 59.999 47.619 36.76 3.15 45.25 1.89
3167 3882 0.398318 ACCAAAGCCTCCAGTCTGTC 59.602 55.000 0.00 0.00 0.00 3.51
3169 3884 0.689623 AGACCAAAGCCTCCAGTCTG 59.310 55.000 0.00 0.00 36.48 3.51
3179 3894 3.118592 ACTGTGAGGCTATAGACCAAAGC 60.119 47.826 12.02 0.00 35.47 3.51
3202 3918 0.326904 ACCTGGATCATGGCTCTGGA 60.327 55.000 0.00 0.00 0.00 3.86
3209 3925 3.318313 ACCCTAACTACCTGGATCATGG 58.682 50.000 0.00 0.00 0.00 3.66
3233 3950 0.031043 TGTGCATGCTGCTGTTGTTC 59.969 50.000 20.33 0.00 45.31 3.18
3256 3973 1.384502 CCTCCTGACCCCCAGCATA 60.385 63.158 0.00 0.00 41.57 3.14
3260 3977 1.997874 CTTCCCTCCTGACCCCCAG 60.998 68.421 0.00 0.00 42.55 4.45
3261 3978 2.056099 TTCTTCCCTCCTGACCCCCA 62.056 60.000 0.00 0.00 0.00 4.96
3262 3979 0.845102 TTTCTTCCCTCCTGACCCCC 60.845 60.000 0.00 0.00 0.00 5.40
3282 4004 8.867097 AGTTACTAATCTCTCTCTCTCTCGTAT 58.133 37.037 0.00 0.00 0.00 3.06
3283 4005 8.241497 AGTTACTAATCTCTCTCTCTCTCGTA 57.759 38.462 0.00 0.00 0.00 3.43
3284 4006 7.120923 AGTTACTAATCTCTCTCTCTCTCGT 57.879 40.000 0.00 0.00 0.00 4.18
3286 4008 9.174166 ACAAAGTTACTAATCTCTCTCTCTCTC 57.826 37.037 0.00 0.00 0.00 3.20
3287 4009 8.956426 CACAAAGTTACTAATCTCTCTCTCTCT 58.044 37.037 0.00 0.00 0.00 3.10
3289 4011 8.644374 ACACAAAGTTACTAATCTCTCTCTCT 57.356 34.615 0.00 0.00 0.00 3.10
3290 4012 9.349145 GAACACAAAGTTACTAATCTCTCTCTC 57.651 37.037 0.00 0.00 41.51 3.20
3292 4014 9.646427 ATGAACACAAAGTTACTAATCTCTCTC 57.354 33.333 0.00 0.00 41.51 3.20
3312 4045 9.884636 GCCAGGTACATATATAATGTATGAACA 57.115 33.333 5.91 0.00 40.69 3.18
3319 4052 5.419542 CAGCGCCAGGTACATATATAATGT 58.580 41.667 2.29 0.00 36.13 2.71
3322 4055 3.259625 TGCAGCGCCAGGTACATATATAA 59.740 43.478 2.29 0.00 0.00 0.98
3324 4057 1.623311 TGCAGCGCCAGGTACATATAT 59.377 47.619 2.29 0.00 0.00 0.86
3339 4273 8.063630 CCAAAATAAAATTCCGATATTTGCAGC 58.936 33.333 0.00 0.00 31.50 5.25
3347 4281 7.090953 ACTTCGCCAAAATAAAATTCCGATA 57.909 32.000 0.00 0.00 0.00 2.92
3440 4382 9.820229 TGAAAATAAATCGAGTACATTTCACAC 57.180 29.630 12.72 5.07 32.42 3.82
3494 4442 3.198417 TCTTAGCATGACAGCATCCTTCA 59.802 43.478 0.00 0.00 36.85 3.02
3495 4443 3.801698 TCTTAGCATGACAGCATCCTTC 58.198 45.455 0.00 0.00 36.85 3.46
3539 4487 6.430000 ACAACCGTCTATCAGCAACTTTAAAT 59.570 34.615 0.00 0.00 0.00 1.40
3543 4491 3.740115 ACAACCGTCTATCAGCAACTTT 58.260 40.909 0.00 0.00 0.00 2.66
3566 4515 2.239654 CCCTCTCCTCTGCAAAATGGTA 59.760 50.000 0.00 0.00 0.00 3.25
3579 4528 4.354087 ACAAAATACTTTCCACCCTCTCCT 59.646 41.667 0.00 0.00 0.00 3.69
3685 4634 0.682532 TGGGTTGAAGCTGTTGCACA 60.683 50.000 0.00 0.00 42.74 4.57
3691 4640 2.172717 AGTTACTGTGGGTTGAAGCTGT 59.827 45.455 0.00 0.00 0.00 4.40
3737 4686 6.836527 CCATTTTTGTACCCTACATATTCCCA 59.163 38.462 0.00 0.00 38.68 4.37
3739 4688 6.549736 AGCCATTTTTGTACCCTACATATTCC 59.450 38.462 0.00 0.00 38.68 3.01
3756 4705 4.344978 GTCCCCTAAGAAAGAGCCATTTT 58.655 43.478 0.00 0.00 0.00 1.82
3768 4717 8.272173 CAATTTGTTCTAATAGGTCCCCTAAGA 58.728 37.037 0.00 0.00 39.77 2.10
3855 4807 3.323691 ACCACCATTTTTGCTCCCTTTAC 59.676 43.478 0.00 0.00 0.00 2.01
4096 5052 9.979578 TTGGTAAGTATGTTCTTTTACGAGTTA 57.020 29.630 0.00 0.00 0.00 2.24
4130 5086 3.558033 TCATTGGTCATGCAGCATGTAT 58.442 40.909 30.38 18.10 44.27 2.29
4181 5168 9.298250 AGAAATAAGAATGATGATCTCCATTGG 57.702 33.333 14.77 0.00 35.17 3.16
4249 5303 3.957497 TCACTGGCCAATAGTGTTTGTTT 59.043 39.130 19.76 0.00 44.49 2.83
4374 5428 1.816074 TGGCGTCTTTGGTCAATACC 58.184 50.000 0.00 0.00 46.98 2.73
4402 5456 3.627577 CCGCTGCCTATATTTCTTTGTGT 59.372 43.478 0.00 0.00 0.00 3.72
4423 5477 2.366916 ACTAGCTGTGATATGCCACTCC 59.633 50.000 0.00 0.00 37.89 3.85
4462 5516 6.295039 TGTAGTTTCAAGTTTTGGTCGATC 57.705 37.500 0.00 0.00 0.00 3.69
4488 5542 6.934083 AGTGTTTCCTTTTTCTTTTTGAGCAA 59.066 30.769 0.00 0.00 0.00 3.91
4489 5543 6.463360 AGTGTTTCCTTTTTCTTTTTGAGCA 58.537 32.000 0.00 0.00 0.00 4.26
4490 5544 6.968131 AGTGTTTCCTTTTTCTTTTTGAGC 57.032 33.333 0.00 0.00 0.00 4.26
4506 5560 3.057946 GTGCCTCTGGATTGAAGTGTTTC 60.058 47.826 0.00 0.00 0.00 2.78
4530 5789 7.753580 GGTACATATTTACAGTTTCTGCAAACC 59.246 37.037 1.66 0.00 42.72 3.27
4645 5991 0.331616 ACACTTGGGGAATGCCTACC 59.668 55.000 0.00 0.00 0.00 3.18
4662 6008 4.113617 CTCGACCAGAGGGGAACA 57.886 61.111 0.00 0.00 43.20 3.18
4729 6075 8.378565 GGTCTCCTATCCATTTCATTTCTATCA 58.621 37.037 0.00 0.00 0.00 2.15
4738 6084 5.439721 CATGTTGGTCTCCTATCCATTTCA 58.560 41.667 0.00 0.00 33.50 2.69
4871 6217 5.106118 CCTCTTGTAGAGAAACATCACGAGA 60.106 44.000 5.30 0.00 45.07 4.04
4912 6258 3.507622 AGTCGTCTCAATCTGACATGTGA 59.492 43.478 1.15 0.00 34.37 3.58
4917 6263 1.613437 TGCAGTCGTCTCAATCTGACA 59.387 47.619 0.00 0.00 34.37 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.