Multiple sequence alignment - TraesCS5B01G217200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G217200 chr5B 100.000 6648 0 0 1 6648 391304679 391298032 0.000000e+00 12277.0
1 TraesCS5B01G217200 chr5B 85.469 1342 179 10 2085 3417 391150316 391148982 0.000000e+00 1384.0
2 TraesCS5B01G217200 chr5B 83.434 1485 224 17 1968 3440 391448174 391446700 0.000000e+00 1360.0
3 TraesCS5B01G217200 chr5B 88.269 861 94 7 3521 4378 391446078 391445222 0.000000e+00 1024.0
4 TraesCS5B01G217200 chr5B 84.623 956 120 19 4874 5822 391444808 391443873 0.000000e+00 926.0
5 TraesCS5B01G217200 chr5B 84.785 861 122 5 3521 4379 391148164 391147311 0.000000e+00 856.0
6 TraesCS5B01G217200 chr5B 77.778 549 89 15 4721 5265 391147074 391146555 2.330000e-79 307.0
7 TraesCS5B01G217200 chr5B 87.931 116 10 4 4606 4719 10099729 10099842 4.180000e-27 134.0
8 TraesCS5B01G217200 chr5A 91.588 1688 113 15 1847 3521 436107629 436105958 0.000000e+00 2303.0
9 TraesCS5B01G217200 chr5A 91.100 1191 87 9 4724 5899 436104166 436102980 0.000000e+00 1594.0
10 TraesCS5B01G217200 chr5A 92.984 1069 58 8 3522 4582 436105226 436104167 0.000000e+00 1543.0
11 TraesCS5B01G217200 chr5A 85.230 1327 187 8 2117 3440 436180058 436178738 0.000000e+00 1356.0
12 TraesCS5B01G217200 chr5A 84.753 1338 186 11 2091 3417 436094832 436093502 0.000000e+00 1325.0
13 TraesCS5B01G217200 chr5A 84.244 1098 130 31 3521 4581 436178151 436177060 0.000000e+00 1029.0
14 TraesCS5B01G217200 chr5A 86.000 950 109 18 4874 5819 436176888 436175959 0.000000e+00 996.0
15 TraesCS5B01G217200 chr5A 84.706 850 123 3 3531 4379 436092668 436091825 0.000000e+00 843.0
16 TraesCS5B01G217200 chr5A 89.045 639 50 15 701 1332 436108764 436108139 0.000000e+00 774.0
17 TraesCS5B01G217200 chr5A 88.441 372 24 6 214 585 436109733 436109381 1.320000e-116 431.0
18 TraesCS5B01G217200 chr5A 84.831 356 34 13 1448 1792 436108080 436107734 2.300000e-89 340.0
19 TraesCS5B01G217200 chr5A 83.292 401 30 15 6011 6381 544501701 544501308 1.070000e-87 335.0
20 TraesCS5B01G217200 chr5A 87.544 281 29 6 1050 1328 436181082 436180806 2.990000e-83 320.0
21 TraesCS5B01G217200 chr5A 77.717 552 86 20 4721 5264 436091588 436091066 3.010000e-78 303.0
22 TraesCS5B01G217200 chr5A 89.385 179 19 0 1150 1328 436096901 436096723 6.710000e-55 226.0
23 TraesCS5B01G217200 chr5A 100.000 31 0 0 5931 5961 436102948 436102918 2.590000e-04 58.4
24 TraesCS5B01G217200 chr5D 94.340 1484 72 3 2048 3522 334305764 334304284 0.000000e+00 2265.0
25 TraesCS5B01G217200 chr5D 92.593 1215 80 7 4724 5932 334302501 334301291 0.000000e+00 1736.0
26 TraesCS5B01G217200 chr5D 93.744 1071 57 7 3521 4582 334303571 334302502 0.000000e+00 1598.0
27 TraesCS5B01G217200 chr5D 85.116 1337 181 11 2093 3417 334260805 334259475 0.000000e+00 1351.0
28 TraesCS5B01G217200 chr5D 83.954 1396 211 10 2048 3440 334406690 334405305 0.000000e+00 1325.0
29 TraesCS5B01G217200 chr5D 87.414 1017 66 36 369 1364 334307692 334306717 0.000000e+00 1112.0
30 TraesCS5B01G217200 chr5D 83.880 1098 134 32 3521 4581 334404683 334403592 0.000000e+00 1007.0
31 TraesCS5B01G217200 chr5D 85.489 951 114 19 4874 5819 334403419 334402488 0.000000e+00 970.0
32 TraesCS5B01G217200 chr5D 85.233 860 120 3 3521 4379 334258781 334257928 0.000000e+00 878.0
33 TraesCS5B01G217200 chr5D 87.199 664 50 13 6011 6648 151188186 151188840 0.000000e+00 723.0
34 TraesCS5B01G217200 chr5D 98.419 253 4 0 556 808 334319065 334318813 4.730000e-121 446.0
35 TraesCS5B01G217200 chr5D 88.418 354 26 6 15 365 334308197 334307856 4.800000e-111 412.0
36 TraesCS5B01G217200 chr5D 93.902 246 12 3 6404 6648 151581278 151581035 1.050000e-97 368.0
37 TraesCS5B01G217200 chr5D 77.617 554 85 22 4721 5265 334257701 334257178 3.900000e-77 300.0
38 TraesCS5B01G217200 chr5D 87.843 255 25 3 1074 1328 334408745 334408497 1.810000e-75 294.0
39 TraesCS5B01G217200 chr5D 90.500 200 14 4 1592 1788 334306190 334305993 6.610000e-65 259.0
40 TraesCS5B01G217200 chr5D 93.069 101 6 1 6012 6112 151581771 151581672 5.370000e-31 147.0
41 TraesCS5B01G217200 chr2D 88.939 660 34 11 6009 6648 377030238 377029598 0.000000e+00 778.0
42 TraesCS5B01G217200 chr3A 88.196 593 36 13 6010 6574 230705393 230705979 0.000000e+00 676.0
43 TraesCS5B01G217200 chr3A 92.449 437 27 6 6214 6648 230706496 230706928 2.630000e-173 619.0
44 TraesCS5B01G217200 chr3A 77.301 163 23 10 4572 4722 491190712 491190872 4.270000e-12 84.2
45 TraesCS5B01G217200 chr3B 89.286 504 32 12 6146 6645 69449031 69449516 4.410000e-171 612.0
46 TraesCS5B01G217200 chr3B 94.949 99 4 1 6011 6109 69430690 69430787 3.210000e-33 154.0
47 TraesCS5B01G217200 chr3B 93.333 45 3 0 5952 5996 128729519 128729475 4.300000e-07 67.6
48 TraesCS5B01G217200 chr3B 93.478 46 1 2 5952 5996 264975993 264976037 4.300000e-07 67.6
49 TraesCS5B01G217200 chr3B 93.333 45 3 0 5952 5996 273597671 273597627 4.300000e-07 67.6
50 TraesCS5B01G217200 chr4D 95.062 243 9 3 6407 6648 27551694 27551454 4.870000e-101 379.0
51 TraesCS5B01G217200 chr4D 86.431 339 14 14 6011 6327 27552358 27552030 6.380000e-90 342.0
52 TraesCS5B01G217200 chr4D 79.572 514 57 31 6010 6494 450842960 450842466 2.310000e-84 324.0
53 TraesCS5B01G217200 chr4D 90.476 63 4 2 6487 6547 450842453 450842391 1.540000e-11 82.4
54 TraesCS5B01G217200 chr4D 93.333 45 3 0 5952 5996 493256916 493256872 4.300000e-07 67.6
55 TraesCS5B01G217200 chr7D 83.208 399 31 17 6011 6381 24404497 24404107 3.840000e-87 333.0
56 TraesCS5B01G217200 chr7D 93.333 45 3 0 5952 5996 191727522 191727478 4.300000e-07 67.6
57 TraesCS5B01G217200 chr4A 78.865 511 62 27 6010 6494 15998675 15999165 3.010000e-78 303.0
58 TraesCS5B01G217200 chr4A 78.474 511 62 31 6010 6492 682735820 682735330 2.350000e-74 291.0
59 TraesCS5B01G217200 chr4A 90.789 76 3 3 6487 6560 15999182 15999255 1.530000e-16 99.0
60 TraesCS5B01G217200 chr4A 92.063 63 3 2 6487 6547 682735312 682735250 3.300000e-13 87.9
61 TraesCS5B01G217200 chr1B 79.139 302 38 19 6173 6471 356300114 356299835 1.140000e-42 185.0
62 TraesCS5B01G217200 chr2A 86.093 151 17 2 4577 4724 452797752 452797901 6.900000e-35 159.0
63 TraesCS5B01G217200 chr2A 88.034 117 13 1 4606 4722 141506433 141506318 3.230000e-28 137.0
64 TraesCS5B01G217200 chr3D 88.034 117 12 2 4606 4722 482599292 482599406 3.230000e-28 137.0
65 TraesCS5B01G217200 chr3D 100.000 31 0 0 4579 4609 460247825 460247795 2.590000e-04 58.4
66 TraesCS5B01G217200 chr7A 87.395 119 14 1 4606 4724 547102901 547102784 1.160000e-27 135.0
67 TraesCS5B01G217200 chr4B 87.288 118 14 1 4606 4723 366930263 366930147 4.180000e-27 134.0
68 TraesCS5B01G217200 chr6A 87.719 114 13 1 4606 4719 391254453 391254565 1.500000e-26 132.0
69 TraesCS5B01G217200 chr6A 79.355 155 19 4 4579 4722 47469532 47469684 5.490000e-16 97.1
70 TraesCS5B01G217200 chr6B 86.555 119 15 1 4606 4723 549621395 549621277 5.410000e-26 130.0
71 TraesCS5B01G217200 chr6B 78.846 156 19 5 4579 4722 82006086 82005933 7.100000e-15 93.5
72 TraesCS5B01G217200 chr2B 82.877 146 20 4 4579 4722 568278252 568278394 7.000000e-25 126.0
73 TraesCS5B01G217200 chrUn 80.000 155 18 5 4579 4722 27074550 27074398 1.180000e-17 102.0
74 TraesCS5B01G217200 chr7B 79.747 158 19 9 4576 4722 539868778 539868933 1.180000e-17 102.0
75 TraesCS5B01G217200 chr7B 95.556 45 2 0 5952 5996 490142134 490142178 9.250000e-09 73.1
76 TraesCS5B01G217200 chr7B 93.478 46 3 0 5952 5997 365022994 365022949 1.200000e-07 69.4
77 TraesCS5B01G217200 chr7B 93.333 45 3 0 5952 5996 229887242 229887198 4.300000e-07 67.6
78 TraesCS5B01G217200 chr7B 93.333 45 3 0 5952 5996 638015940 638015984 4.300000e-07 67.6
79 TraesCS5B01G217200 chr1A 96.970 33 0 1 4580 4612 499187464 499187433 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G217200 chr5B 391298032 391304679 6647 True 12277.000000 12277 100.000000 1 6648 1 chr5B.!!$R1 6647
1 TraesCS5B01G217200 chr5B 391443873 391448174 4301 True 1103.333333 1360 85.442000 1968 5822 3 chr5B.!!$R3 3854
2 TraesCS5B01G217200 chr5B 391146555 391150316 3761 True 849.000000 1384 82.677333 2085 5265 3 chr5B.!!$R2 3180
3 TraesCS5B01G217200 chr5A 436102918 436109733 6815 True 1006.200000 2303 91.141286 214 5961 7 chr5A.!!$R3 5747
4 TraesCS5B01G217200 chr5A 436175959 436181082 5123 True 925.250000 1356 85.754500 1050 5819 4 chr5A.!!$R4 4769
5 TraesCS5B01G217200 chr5A 436091066 436096901 5835 True 674.250000 1325 84.140250 1150 5264 4 chr5A.!!$R2 4114
6 TraesCS5B01G217200 chr5D 334301291 334308197 6906 True 1230.333333 2265 91.168167 15 5932 6 chr5D.!!$R4 5917
7 TraesCS5B01G217200 chr5D 334402488 334408745 6257 True 899.000000 1325 85.291500 1074 5819 4 chr5D.!!$R5 4745
8 TraesCS5B01G217200 chr5D 334257178 334260805 3627 True 843.000000 1351 82.655333 2093 5265 3 chr5D.!!$R3 3172
9 TraesCS5B01G217200 chr5D 151188186 151188840 654 False 723.000000 723 87.199000 6011 6648 1 chr5D.!!$F1 637
10 TraesCS5B01G217200 chr5D 151581035 151581771 736 True 257.500000 368 93.485500 6012 6648 2 chr5D.!!$R2 636
11 TraesCS5B01G217200 chr2D 377029598 377030238 640 True 778.000000 778 88.939000 6009 6648 1 chr2D.!!$R1 639
12 TraesCS5B01G217200 chr3A 230705393 230706928 1535 False 647.500000 676 90.322500 6010 6648 2 chr3A.!!$F2 638
13 TraesCS5B01G217200 chr4D 27551454 27552358 904 True 360.500000 379 90.746500 6011 6648 2 chr4D.!!$R2 637
14 TraesCS5B01G217200 chr4D 450842391 450842960 569 True 203.200000 324 85.024000 6010 6547 2 chr4D.!!$R3 537
15 TraesCS5B01G217200 chr4A 15998675 15999255 580 False 201.000000 303 84.827000 6010 6560 2 chr4A.!!$F1 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
166 167 0.107831 TCCTTTTCCTCCACACACCG 59.892 55.000 0.00 0.0 0.00 4.94 F
1083 1800 0.108472 TCGTCATCCTGCTTCTGCTG 60.108 55.000 0.00 0.0 40.48 4.41 F
1443 3612 0.321996 AGAACTGGGAAAGACGGAGC 59.678 55.000 0.00 0.0 0.00 4.70 F
3184 6485 0.545309 AACTGCACCTAGAGGCTGGA 60.545 55.000 13.91 0.0 39.32 3.86 F
3801 8398 0.473117 AGACTTCCGAGGTTCCCCAA 60.473 55.000 0.00 0.0 0.00 4.12 F
4594 9254 1.204231 GGAACTACTCCCTCCGTTCAC 59.796 57.143 0.00 0.0 38.44 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1437 3606 0.038159 CGTCTTCCTCAAAGCTCCGT 60.038 55.000 0.00 0.00 34.76 4.69 R
2589 5878 0.110104 CCTGGCTCATCATCCCTTCC 59.890 60.000 0.00 0.00 0.00 3.46 R
3340 6647 0.776810 TCCCCATCTCCAAACTGCAA 59.223 50.000 0.00 0.00 0.00 4.08 R
5038 9753 1.077357 GAGTGGAGAGCCTCGAGGA 60.077 63.158 35.69 10.23 37.39 3.71 R
5494 10209 1.003696 CCTGGTGTTCCTTCTCCTTCC 59.996 57.143 0.00 0.00 34.23 3.46 R
6002 10734 0.179171 CGAGTCGCGTCCTTACATGT 60.179 55.000 5.77 2.69 34.64 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.835156 AGGGTCTTCTCTTTAGCCTCAC 59.165 50.000 0.00 0.00 36.39 3.51
45 46 0.600255 AGCCTCACGACGAAAACCAG 60.600 55.000 0.00 0.00 0.00 4.00
46 47 1.860078 CCTCACGACGAAAACCAGC 59.140 57.895 0.00 0.00 0.00 4.85
59 60 1.470051 AACCAGCCAAACGTTTGACT 58.530 45.000 36.20 29.48 40.55 3.41
96 97 1.545706 GGACGGGAAGAAGCAGGACT 61.546 60.000 0.00 0.00 0.00 3.85
113 114 4.080356 CAGGACTAGAAAATCCCATGTCCA 60.080 45.833 11.13 0.00 43.31 4.02
116 117 4.600062 ACTAGAAAATCCCATGTCCAACC 58.400 43.478 0.00 0.00 0.00 3.77
117 118 2.820178 AGAAAATCCCATGTCCAACCC 58.180 47.619 0.00 0.00 0.00 4.11
118 119 2.111613 AGAAAATCCCATGTCCAACCCA 59.888 45.455 0.00 0.00 0.00 4.51
119 120 1.937191 AAATCCCATGTCCAACCCAC 58.063 50.000 0.00 0.00 0.00 4.61
120 121 0.323360 AATCCCATGTCCAACCCACG 60.323 55.000 0.00 0.00 0.00 4.94
121 122 2.210144 ATCCCATGTCCAACCCACGG 62.210 60.000 0.00 0.00 0.00 4.94
140 141 0.388649 GCCACCGCGTGATAGGATAG 60.389 60.000 4.92 0.00 35.23 2.08
141 142 1.244816 CCACCGCGTGATAGGATAGA 58.755 55.000 4.92 0.00 35.23 1.98
146 147 2.286477 CCGCGTGATAGGATAGATAGCG 60.286 54.545 4.92 0.00 43.93 4.26
152 153 5.124138 CGTGATAGGATAGATAGCGTCCTTT 59.876 44.000 12.22 5.87 42.24 3.11
153 154 6.349445 CGTGATAGGATAGATAGCGTCCTTTT 60.349 42.308 12.22 2.83 42.24 2.27
155 156 4.875561 AGGATAGATAGCGTCCTTTTCC 57.124 45.455 2.59 0.00 39.28 3.13
164 165 1.226746 CGTCCTTTTCCTCCACACAC 58.773 55.000 0.00 0.00 0.00 3.82
166 167 0.107831 TCCTTTTCCTCCACACACCG 59.892 55.000 0.00 0.00 0.00 4.94
173 174 4.314440 TCCACACACCGCCTGCTC 62.314 66.667 0.00 0.00 0.00 4.26
177 178 2.031012 CACACCGCCTGCTCTGAA 59.969 61.111 0.00 0.00 0.00 3.02
178 179 1.597854 CACACCGCCTGCTCTGAAA 60.598 57.895 0.00 0.00 0.00 2.69
180 181 0.674895 ACACCGCCTGCTCTGAAATC 60.675 55.000 0.00 0.00 0.00 2.17
185 186 1.805871 CGCCTGCTCTGAAATCCTCTC 60.806 57.143 0.00 0.00 0.00 3.20
187 188 2.742530 GCCTGCTCTGAAATCCTCTCTG 60.743 54.545 0.00 0.00 0.00 3.35
188 189 2.500910 CCTGCTCTGAAATCCTCTCTGT 59.499 50.000 0.00 0.00 0.00 3.41
297 298 1.712401 TGATTTAGCGCGTAAACGGT 58.288 45.000 8.43 0.00 46.83 4.83
349 353 0.796927 GCAGAAAACTCCAGCGGTAC 59.203 55.000 0.00 0.00 0.00 3.34
369 373 6.274001 GTACGAACAGTATACGTAGCAGTA 57.726 41.667 0.08 0.00 41.80 2.74
371 375 4.872691 ACGAACAGTATACGTAGCAGTACT 59.127 41.667 0.08 0.96 38.47 2.73
372 376 6.042777 ACGAACAGTATACGTAGCAGTACTA 58.957 40.000 0.08 0.00 38.47 1.82
373 377 6.019479 ACGAACAGTATACGTAGCAGTACTAC 60.019 42.308 0.08 0.00 46.70 2.73
384 549 2.834574 CAGTACTACTGTGAGCCGAG 57.165 55.000 7.93 0.00 41.19 4.63
425 590 1.735973 GATTTGGCGATCTTGGGGC 59.264 57.895 0.00 0.00 0.00 5.80
471 636 1.676529 CGGATCGTCAGTATGGTCAGT 59.323 52.381 0.00 0.00 36.16 3.41
480 645 7.478322 TCGTCAGTATGGTCAGTAACTTAATC 58.522 38.462 0.00 0.00 36.16 1.75
490 655 5.347907 GTCAGTAACTTAATCTGACCCAACG 59.652 44.000 11.85 0.00 46.85 4.10
599 766 2.455557 CCTTTGGGGTAACATGCATCA 58.544 47.619 0.00 0.00 39.74 3.07
600 767 2.428171 CCTTTGGGGTAACATGCATCAG 59.572 50.000 0.00 0.00 39.74 2.90
601 768 1.473258 TTGGGGTAACATGCATCAGC 58.527 50.000 0.00 0.00 39.33 4.26
602 769 0.625316 TGGGGTAACATGCATCAGCT 59.375 50.000 0.00 0.00 39.57 4.24
605 772 1.683011 GGGTAACATGCATCAGCTGGT 60.683 52.381 15.13 2.68 39.57 4.00
607 774 2.493278 GGTAACATGCATCAGCTGGTTT 59.507 45.455 15.13 0.00 42.74 3.27
608 775 3.428045 GGTAACATGCATCAGCTGGTTTC 60.428 47.826 15.13 6.61 42.74 2.78
618 788 1.532868 CAGCTGGTTTCCTGAAGTTCG 59.467 52.381 5.57 0.00 0.00 3.95
620 790 1.264288 GCTGGTTTCCTGAAGTTCGTG 59.736 52.381 0.00 0.00 0.00 4.35
624 794 3.127895 TGGTTTCCTGAAGTTCGTGTTTG 59.872 43.478 0.00 0.00 0.00 2.93
625 795 3.128068 GGTTTCCTGAAGTTCGTGTTTGT 59.872 43.478 0.00 0.00 0.00 2.83
626 796 4.380128 GGTTTCCTGAAGTTCGTGTTTGTT 60.380 41.667 0.00 0.00 0.00 2.83
639 1339 5.038033 TCGTGTTTGTTTTGTTCATTAGGC 58.962 37.500 0.00 0.00 0.00 3.93
662 1362 2.856557 GCACTCTCGAAATTACGTACCC 59.143 50.000 0.00 0.00 34.70 3.69
674 1374 0.599204 ACGTACCCAGCACAAGAACG 60.599 55.000 0.00 0.00 35.17 3.95
675 1375 0.319211 CGTACCCAGCACAAGAACGA 60.319 55.000 0.00 0.00 0.00 3.85
677 1377 0.320421 TACCCAGCACAAGAACGAGC 60.320 55.000 0.00 0.00 0.00 5.03
678 1378 2.328099 CCCAGCACAAGAACGAGCC 61.328 63.158 0.00 0.00 0.00 4.70
681 1381 1.963338 AGCACAAGAACGAGCCAGC 60.963 57.895 0.00 0.00 0.00 4.85
682 1382 2.856032 CACAAGAACGAGCCAGCG 59.144 61.111 0.00 0.00 37.29 5.18
683 1383 2.357517 ACAAGAACGAGCCAGCGG 60.358 61.111 0.00 0.00 35.12 5.52
729 1429 2.123342 GCCATCGATCTCAACTTCTCG 58.877 52.381 0.00 0.00 0.00 4.04
730 1430 2.223595 GCCATCGATCTCAACTTCTCGA 60.224 50.000 0.00 0.00 43.43 4.04
745 1445 1.798223 TCTCGACCAATCAAAAGCACG 59.202 47.619 0.00 0.00 0.00 5.34
748 1448 3.132160 TCGACCAATCAAAAGCACGTAA 58.868 40.909 0.00 0.00 0.00 3.18
835 1543 3.850122 TCTATCAACCTGTCACTCACG 57.150 47.619 0.00 0.00 0.00 4.35
837 1545 0.392706 ATCAACCTGTCACTCACGCA 59.607 50.000 0.00 0.00 0.00 5.24
904 1612 1.366854 GGCCGATGGAGGAAACGAAC 61.367 60.000 0.00 0.00 0.00 3.95
916 1624 2.933878 AAACGAACTGGCTGGCGTGA 62.934 55.000 13.30 0.00 37.03 4.35
938 1648 1.675714 CGTGAGCATGTAAAGGGAGCA 60.676 52.381 0.00 0.00 0.00 4.26
970 1680 2.410730 CCGCTTCACCAAAAGTACGTAG 59.589 50.000 0.00 0.00 0.00 3.51
972 1682 3.121126 CGCTTCACCAAAAGTACGTAGTG 60.121 47.826 3.10 3.92 45.73 2.74
974 1684 2.758009 TCACCAAAAGTACGTAGTGGC 58.242 47.619 3.10 0.00 45.73 5.01
1069 1786 1.215382 CACGGCCTTCTCATCGTCA 59.785 57.895 0.00 0.00 33.31 4.35
1072 1789 0.598680 CGGCCTTCTCATCGTCATCC 60.599 60.000 0.00 0.00 0.00 3.51
1083 1800 0.108472 TCGTCATCCTGCTTCTGCTG 60.108 55.000 0.00 0.00 40.48 4.41
1158 1875 3.687102 CGGCAGGTGGTGGACGTA 61.687 66.667 0.00 0.00 0.00 3.57
1293 2010 2.283966 CTCCACCTCCGGGACACT 60.284 66.667 0.00 0.00 36.25 3.55
1342 2067 0.604243 AGGTATTTGTTGCGCCGTGA 60.604 50.000 4.18 0.00 0.00 4.35
1358 3054 3.839432 GAACGGCTCCCCCTCTCG 61.839 72.222 0.00 0.00 0.00 4.04
1372 3068 0.378962 CTCTCGGACGGAGCAGTAAG 59.621 60.000 5.18 0.00 42.82 2.34
1443 3612 0.321996 AGAACTGGGAAAGACGGAGC 59.678 55.000 0.00 0.00 0.00 4.70
1491 4290 5.551233 CTGAAATATGGGCCGAATCTTCTA 58.449 41.667 0.00 0.00 0.00 2.10
1493 4292 5.071788 TGAAATATGGGCCGAATCTTCTACT 59.928 40.000 0.00 0.00 0.00 2.57
1498 4297 1.291132 GCCGAATCTTCTACTGTGGC 58.709 55.000 0.00 0.00 0.00 5.01
1508 4307 1.960040 CTACTGTGGCCCGAGCATGA 61.960 60.000 0.00 0.00 42.56 3.07
1546 4346 3.657727 TCATCCCAATTTCTCTATCCCCC 59.342 47.826 0.00 0.00 0.00 5.40
1548 4348 2.054799 CCCAATTTCTCTATCCCCCGA 58.945 52.381 0.00 0.00 0.00 5.14
1549 4349 2.441750 CCCAATTTCTCTATCCCCCGAA 59.558 50.000 0.00 0.00 0.00 4.30
1733 4901 0.976590 AGGTACCCCTTCTTCTCCGC 60.977 60.000 8.74 0.00 38.13 5.54
1763 4934 0.800012 GTCGCGGCAAGTAATTTGGA 59.200 50.000 5.47 0.00 37.26 3.53
1765 4936 2.088423 TCGCGGCAAGTAATTTGGAAT 58.912 42.857 6.13 0.00 37.26 3.01
1792 4963 1.395826 CCCTCGAGCCCCAACTAGAG 61.396 65.000 6.99 0.00 38.66 2.43
1793 4964 1.439644 CTCGAGCCCCAACTAGAGC 59.560 63.158 0.00 0.00 33.53 4.09
1795 4966 0.687757 TCGAGCCCCAACTAGAGCAT 60.688 55.000 0.00 0.00 0.00 3.79
1796 4967 1.040646 CGAGCCCCAACTAGAGCATA 58.959 55.000 0.00 0.00 0.00 3.14
1797 4968 1.269831 CGAGCCCCAACTAGAGCATAC 60.270 57.143 0.00 0.00 0.00 2.39
1798 4969 1.762957 GAGCCCCAACTAGAGCATACA 59.237 52.381 0.00 0.00 0.00 2.29
1799 4970 2.170607 GAGCCCCAACTAGAGCATACAA 59.829 50.000 0.00 0.00 0.00 2.41
1803 5014 4.589908 CCCCAACTAGAGCATACAAGTTT 58.410 43.478 0.00 0.00 29.93 2.66
1834 5048 0.645868 GGAGCATACGAGTTTGACGC 59.354 55.000 0.00 0.00 0.00 5.19
1840 5054 1.787012 TACGAGTTTGACGCTTTCCC 58.213 50.000 0.00 0.00 0.00 3.97
1869 5090 3.149005 TGAAAAACTAGGGCCGTCAAT 57.851 42.857 0.00 0.00 0.00 2.57
1924 5145 8.532977 AAATGCACCTGTGAATTTGTTATTAC 57.467 30.769 14.09 0.00 44.80 1.89
2006 5257 9.685276 ATTTACCATGTGTTATCAATGAGAGAA 57.315 29.630 0.00 0.00 0.00 2.87
2010 5261 6.544931 CCATGTGTTATCAATGAGAGAACCAT 59.455 38.462 0.00 0.00 45.57 3.55
2011 5262 7.067859 CCATGTGTTATCAATGAGAGAACCATT 59.932 37.037 0.00 0.00 45.57 3.16
2012 5263 9.112725 CATGTGTTATCAATGAGAGAACCATTA 57.887 33.333 0.00 0.00 45.57 1.90
2021 5272 8.576442 TCAATGAGAGAACCATTAAAAAGTTCC 58.424 33.333 10.37 4.92 40.61 3.62
2022 5273 8.359642 CAATGAGAGAACCATTAAAAAGTTCCA 58.640 33.333 10.37 4.72 40.61 3.53
2029 5280 7.996644 AGAACCATTAAAAAGTTCCAGTACTGA 59.003 33.333 24.68 7.64 40.61 3.41
2038 5289 9.959721 AAAAAGTTCCAGTACTGATATGTACAT 57.040 29.630 24.68 13.93 43.65 2.29
2039 5290 8.948631 AAAGTTCCAGTACTGATATGTACATG 57.051 34.615 24.68 4.00 43.65 3.21
2040 5291 6.516718 AGTTCCAGTACTGATATGTACATGC 58.483 40.000 24.68 10.65 43.65 4.06
2045 5301 6.015434 CCAGTACTGATATGTACATGCCTACA 60.015 42.308 24.68 9.59 43.65 2.74
2046 5302 7.087007 CAGTACTGATATGTACATGCCTACAG 58.913 42.308 18.45 18.60 43.65 2.74
2061 5345 3.578688 CCTACAGTTTCCTTGCATTTGC 58.421 45.455 0.00 0.00 42.50 3.68
2069 5353 5.244626 AGTTTCCTTGCATTTGCTTGATAGT 59.755 36.000 3.94 0.00 42.66 2.12
2070 5354 6.434028 AGTTTCCTTGCATTTGCTTGATAGTA 59.566 34.615 3.94 0.00 42.66 1.82
2071 5355 7.123247 AGTTTCCTTGCATTTGCTTGATAGTAT 59.877 33.333 3.94 0.00 42.66 2.12
2124 5413 6.467677 TCTAAGATGCATAAGGATTACAGGC 58.532 40.000 0.00 0.00 30.46 4.85
2133 5422 6.349115 GCATAAGGATTACAGGCATTGATCTG 60.349 42.308 0.00 6.08 30.46 2.90
2166 5455 0.874390 GAGTGCAAGCGATTGTTGGA 59.126 50.000 15.72 0.00 0.00 3.53
2196 5485 6.652900 AGACTTCAACTCAGGCTAAATTTCTC 59.347 38.462 0.00 0.00 0.00 2.87
2229 5518 4.932268 GAACAAATCAACGGTTCCGATA 57.068 40.909 18.28 3.15 35.93 2.92
2262 5551 1.226974 AGATTGCCCGTCACGATCG 60.227 57.895 14.88 14.88 33.80 3.69
2271 5560 1.514087 GTCACGATCGGGCCTAACA 59.486 57.895 20.98 0.00 0.00 2.41
2413 5702 7.230510 CCAATATCAAATTCATTCCCGACCTTA 59.769 37.037 0.00 0.00 0.00 2.69
2763 6052 1.069823 CAGAGATGGCGCAGGAAGTAT 59.930 52.381 10.83 0.00 0.00 2.12
2897 6186 3.081804 CAGACTTTGGGCCGTCTTTAAT 58.918 45.455 9.53 0.00 38.37 1.40
2960 6249 1.229428 CCTGCTGAAAAACTGCGAGA 58.771 50.000 0.00 0.00 44.53 4.04
3184 6485 0.545309 AACTGCACCTAGAGGCTGGA 60.545 55.000 13.91 0.00 39.32 3.86
3335 6642 1.683943 TCCTATGAAGTACCCCGTCG 58.316 55.000 0.00 0.00 0.00 5.12
3340 6647 1.477553 TGAAGTACCCCGTCGCTATT 58.522 50.000 0.00 0.00 0.00 1.73
3341 6648 1.826720 TGAAGTACCCCGTCGCTATTT 59.173 47.619 0.00 0.00 0.00 1.40
3354 6661 3.375299 GTCGCTATTTGCAGTTTGGAGAT 59.625 43.478 0.00 0.00 43.06 2.75
3522 6996 5.520649 TGTTCGCCCTTAAACAAAATCAAAC 59.479 36.000 0.00 0.00 32.69 2.93
3523 6997 5.523438 TCGCCCTTAAACAAAATCAAACT 57.477 34.783 0.00 0.00 0.00 2.66
3524 6998 5.908341 TCGCCCTTAAACAAAATCAAACTT 58.092 33.333 0.00 0.00 0.00 2.66
3526 7000 6.919115 TCGCCCTTAAACAAAATCAAACTTAC 59.081 34.615 0.00 0.00 0.00 2.34
3642 8239 1.614241 GGAGTCAGGGGTACGCATGT 61.614 60.000 21.73 5.98 46.88 3.21
3692 8289 3.776969 AGACTGCATGGACATTCCTAAGA 59.223 43.478 0.00 0.00 37.46 2.10
3801 8398 0.473117 AGACTTCCGAGGTTCCCCAA 60.473 55.000 0.00 0.00 0.00 4.12
3821 8418 4.281688 CCAACCAGTCAAATTGGATCAGTT 59.718 41.667 0.00 0.00 44.84 3.16
4214 8811 5.616270 TCAAAGTATTGCCAGAAGTACACA 58.384 37.500 0.00 0.00 36.45 3.72
4261 8858 8.519526 GTTTGATGGATTTGGTTATGTGAGTAA 58.480 33.333 0.00 0.00 0.00 2.24
4288 8886 2.917933 TGCAGTTGTTGAACAGTAGCT 58.082 42.857 15.30 0.00 34.17 3.32
4344 8942 3.925913 TCAATTTTCGCTGCTAATTTGCC 59.074 39.130 9.41 0.00 0.00 4.52
4364 8962 1.271102 CGCAGGATCCTTCTAGTAGCC 59.729 57.143 13.00 0.00 0.00 3.93
4451 9085 7.962934 TGTTTGAGTTGTACTTTGAAATTCG 57.037 32.000 0.00 0.00 0.00 3.34
4507 9158 8.579682 ACAACTGCAAGATTAGATTTGTTTTC 57.420 30.769 0.00 0.00 37.43 2.29
4544 9202 2.679837 GCACGATCATGTTCTGTGGAAT 59.320 45.455 20.26 0.00 33.71 3.01
4560 9220 4.771577 TGTGGAATGTGGTGCTGATTTTAT 59.228 37.500 0.00 0.00 0.00 1.40
4582 9242 9.816787 TTTATTGGTTTTCTATTGGGAACTACT 57.183 29.630 0.00 0.00 0.00 2.57
4583 9243 7.939784 ATTGGTTTTCTATTGGGAACTACTC 57.060 36.000 0.00 0.00 0.00 2.59
4584 9244 5.812286 TGGTTTTCTATTGGGAACTACTCC 58.188 41.667 0.00 0.00 44.54 3.85
4593 9253 1.553706 GGAACTACTCCCTCCGTTCA 58.446 55.000 0.00 0.00 38.44 3.18
4594 9254 1.204231 GGAACTACTCCCTCCGTTCAC 59.796 57.143 0.00 0.00 38.44 3.18
4595 9255 2.169330 GAACTACTCCCTCCGTTCACT 58.831 52.381 0.00 0.00 36.62 3.41
4596 9256 3.350833 GAACTACTCCCTCCGTTCACTA 58.649 50.000 0.00 0.00 36.62 2.74
4597 9257 3.666345 ACTACTCCCTCCGTTCACTAT 57.334 47.619 0.00 0.00 0.00 2.12
4598 9258 3.978610 ACTACTCCCTCCGTTCACTATT 58.021 45.455 0.00 0.00 0.00 1.73
4599 9259 5.121380 ACTACTCCCTCCGTTCACTATTA 57.879 43.478 0.00 0.00 0.00 0.98
4600 9260 5.703310 ACTACTCCCTCCGTTCACTATTAT 58.297 41.667 0.00 0.00 0.00 1.28
4601 9261 6.845908 ACTACTCCCTCCGTTCACTATTATA 58.154 40.000 0.00 0.00 0.00 0.98
4602 9262 7.293073 ACTACTCCCTCCGTTCACTATTATAA 58.707 38.462 0.00 0.00 0.00 0.98
4603 9263 6.651975 ACTCCCTCCGTTCACTATTATAAG 57.348 41.667 0.00 0.00 0.00 1.73
4604 9264 6.371278 ACTCCCTCCGTTCACTATTATAAGA 58.629 40.000 0.00 0.00 0.00 2.10
4605 9265 7.011382 ACTCCCTCCGTTCACTATTATAAGAT 58.989 38.462 0.00 0.00 0.00 2.40
4606 9266 7.509659 ACTCCCTCCGTTCACTATTATAAGATT 59.490 37.037 0.00 0.00 0.00 2.40
4607 9267 8.258850 TCCCTCCGTTCACTATTATAAGATTT 57.741 34.615 0.00 0.00 0.00 2.17
4608 9268 8.711170 TCCCTCCGTTCACTATTATAAGATTTT 58.289 33.333 0.00 0.00 0.00 1.82
4609 9269 8.989980 CCCTCCGTTCACTATTATAAGATTTTC 58.010 37.037 0.00 0.00 0.00 2.29
4610 9270 9.765795 CCTCCGTTCACTATTATAAGATTTTCT 57.234 33.333 0.00 0.00 0.00 2.52
4654 9314 7.598278 CACATTTTAGTGTATTTGTTAGCCCA 58.402 34.615 0.00 0.00 34.83 5.36
4655 9315 8.250332 CACATTTTAGTGTATTTGTTAGCCCAT 58.750 33.333 0.00 0.00 34.83 4.00
4656 9316 8.811994 ACATTTTAGTGTATTTGTTAGCCCATT 58.188 29.630 0.00 0.00 0.00 3.16
4657 9317 9.651913 CATTTTAGTGTATTTGTTAGCCCATTT 57.348 29.630 0.00 0.00 0.00 2.32
4658 9318 9.869757 ATTTTAGTGTATTTGTTAGCCCATTTC 57.130 29.630 0.00 0.00 0.00 2.17
4659 9319 8.410673 TTTAGTGTATTTGTTAGCCCATTTCA 57.589 30.769 0.00 0.00 0.00 2.69
4660 9320 6.515272 AGTGTATTTGTTAGCCCATTTCAG 57.485 37.500 0.00 0.00 0.00 3.02
4661 9321 6.010219 AGTGTATTTGTTAGCCCATTTCAGT 58.990 36.000 0.00 0.00 0.00 3.41
4662 9322 6.151144 AGTGTATTTGTTAGCCCATTTCAGTC 59.849 38.462 0.00 0.00 0.00 3.51
4663 9323 6.151144 GTGTATTTGTTAGCCCATTTCAGTCT 59.849 38.462 0.00 0.00 0.00 3.24
4664 9324 5.649782 ATTTGTTAGCCCATTTCAGTCTG 57.350 39.130 0.00 0.00 0.00 3.51
4665 9325 3.788227 TGTTAGCCCATTTCAGTCTGT 57.212 42.857 0.00 0.00 0.00 3.41
4666 9326 4.901197 TGTTAGCCCATTTCAGTCTGTA 57.099 40.909 0.00 0.00 0.00 2.74
4667 9327 5.435686 TGTTAGCCCATTTCAGTCTGTAT 57.564 39.130 0.00 0.00 0.00 2.29
4668 9328 5.185454 TGTTAGCCCATTTCAGTCTGTATG 58.815 41.667 0.00 5.42 0.00 2.39
4669 9329 5.186198 GTTAGCCCATTTCAGTCTGTATGT 58.814 41.667 0.00 0.00 0.00 2.29
4670 9330 6.070481 TGTTAGCCCATTTCAGTCTGTATGTA 60.070 38.462 0.00 0.00 0.00 2.29
4671 9331 5.028549 AGCCCATTTCAGTCTGTATGTAG 57.971 43.478 0.00 1.54 0.00 2.74
4672 9332 4.471386 AGCCCATTTCAGTCTGTATGTAGT 59.529 41.667 0.00 0.00 0.00 2.73
4673 9333 5.045578 AGCCCATTTCAGTCTGTATGTAGTT 60.046 40.000 0.00 0.00 0.00 2.24
4674 9334 5.065218 GCCCATTTCAGTCTGTATGTAGTTG 59.935 44.000 0.00 0.00 0.00 3.16
4675 9335 6.406370 CCCATTTCAGTCTGTATGTAGTTGA 58.594 40.000 0.00 0.00 0.00 3.18
4676 9336 7.050377 CCCATTTCAGTCTGTATGTAGTTGAT 58.950 38.462 0.00 0.00 0.00 2.57
4677 9337 8.204160 CCCATTTCAGTCTGTATGTAGTTGATA 58.796 37.037 0.00 0.00 0.00 2.15
4678 9338 9.770097 CCATTTCAGTCTGTATGTAGTTGATAT 57.230 33.333 0.00 0.00 0.00 1.63
4918 9626 9.445878 CATGAGTGATTAATATTACTGCCTCAT 57.554 33.333 14.92 14.92 31.35 2.90
4997 9712 4.100963 TGGCATGTATACCACTAGTGAAGG 59.899 45.833 24.68 10.34 0.00 3.46
5008 9723 5.248477 ACCACTAGTGAAGGCTTTTCTGATA 59.752 40.000 24.68 0.00 0.00 2.15
5012 9727 5.753721 AGTGAAGGCTTTTCTGATACTCT 57.246 39.130 0.00 0.00 0.00 3.24
5038 9753 1.815003 GTGCTAACTCTGCAGGCATTT 59.185 47.619 15.13 4.68 41.41 2.32
5176 9891 4.713792 AGATGACTCCCAAACTTCAAGT 57.286 40.909 0.00 0.00 0.00 3.16
5494 10209 1.146263 GGATACAGGAAGCCCACCG 59.854 63.158 0.00 0.00 33.88 4.94
5575 10290 4.476628 TGCTTACATGCATTCTGAGAGA 57.523 40.909 0.00 0.00 38.12 3.10
5616 10331 0.832135 TTGTCTCGGAGTGGGAGCTT 60.832 55.000 4.69 0.00 0.00 3.74
5620 10335 0.539051 CTCGGAGTGGGAGCTTGATT 59.461 55.000 0.00 0.00 0.00 2.57
5629 10344 0.813210 GGAGCTTGATTCGCAGGAGG 60.813 60.000 0.00 0.00 0.00 4.30
5672 10387 2.094906 ACTGTACTTGACGAGCGCATAA 60.095 45.455 11.47 0.00 0.00 1.90
5680 10395 2.094906 TGACGAGCGCATAACTTACTGT 60.095 45.455 11.47 0.00 0.00 3.55
5681 10396 2.527100 ACGAGCGCATAACTTACTGTC 58.473 47.619 11.47 0.00 0.00 3.51
5684 10399 1.475280 AGCGCATAACTTACTGTCCGA 59.525 47.619 11.47 0.00 0.00 4.55
5691 10406 6.345803 CGCATAACTTACTGTCCGATGTAATG 60.346 42.308 0.00 0.00 0.00 1.90
5797 10519 1.134699 TGATGCTAGTTGCGAGGAAGG 60.135 52.381 0.00 0.00 46.63 3.46
5810 10532 2.630098 CGAGGAAGGGATTCTGATGCTA 59.370 50.000 0.00 0.00 0.00 3.49
5823 10545 4.825422 TCTGATGCTAGTGGTTTCTGAAG 58.175 43.478 0.00 0.00 0.00 3.02
5831 10553 3.545703 AGTGGTTTCTGAAGAACCTGTG 58.454 45.455 11.45 0.00 33.13 3.66
5880 10602 2.749621 CACCCCCTCAAAATTCGAAGAG 59.250 50.000 3.35 4.58 38.43 2.85
5899 10621 5.171147 AGAGATTATCGAATGACGTCGTT 57.829 39.130 22.58 22.58 41.80 3.85
5904 10626 3.700130 ATCGAATGACGTCGTTTTGTC 57.300 42.857 23.17 10.40 41.80 3.18
5914 10636 0.393132 TCGTTTTGTCAGGTGCCACA 60.393 50.000 0.00 0.00 0.00 4.17
5919 10642 2.877097 TTGTCAGGTGCCACATATGT 57.123 45.000 1.41 1.41 0.00 2.29
5964 10696 8.810652 TGTTTTTATCAAATGCAAAGTACTCC 57.189 30.769 0.00 0.00 0.00 3.85
5965 10697 8.637986 TGTTTTTATCAAATGCAAAGTACTCCT 58.362 29.630 0.00 0.00 0.00 3.69
5966 10698 9.476202 GTTTTTATCAAATGCAAAGTACTCCTT 57.524 29.630 0.00 0.00 33.79 3.36
5967 10699 9.691362 TTTTTATCAAATGCAAAGTACTCCTTC 57.309 29.630 0.00 0.00 31.27 3.46
5968 10700 5.904362 ATCAAATGCAAAGTACTCCTTCC 57.096 39.130 0.00 0.00 31.27 3.46
5969 10701 3.751175 TCAAATGCAAAGTACTCCTTCCG 59.249 43.478 0.00 0.00 31.27 4.30
5970 10702 3.418684 AATGCAAAGTACTCCTTCCGT 57.581 42.857 0.00 0.00 31.27 4.69
5971 10703 2.922740 TGCAAAGTACTCCTTCCGTT 57.077 45.000 0.00 0.00 31.27 4.44
5972 10704 2.762745 TGCAAAGTACTCCTTCCGTTC 58.237 47.619 0.00 0.00 31.27 3.95
5973 10705 2.074576 GCAAAGTACTCCTTCCGTTCC 58.925 52.381 0.00 0.00 31.27 3.62
5974 10706 2.549349 GCAAAGTACTCCTTCCGTTCCA 60.549 50.000 0.00 0.00 31.27 3.53
5975 10707 3.064931 CAAAGTACTCCTTCCGTTCCAC 58.935 50.000 0.00 0.00 31.27 4.02
5976 10708 2.005370 AGTACTCCTTCCGTTCCACA 57.995 50.000 0.00 0.00 0.00 4.17
5977 10709 2.322658 AGTACTCCTTCCGTTCCACAA 58.677 47.619 0.00 0.00 0.00 3.33
5978 10710 2.904434 AGTACTCCTTCCGTTCCACAAT 59.096 45.455 0.00 0.00 0.00 2.71
5979 10711 4.091549 AGTACTCCTTCCGTTCCACAATA 58.908 43.478 0.00 0.00 0.00 1.90
5980 10712 3.329929 ACTCCTTCCGTTCCACAATAC 57.670 47.619 0.00 0.00 0.00 1.89
5981 10713 2.635915 ACTCCTTCCGTTCCACAATACA 59.364 45.455 0.00 0.00 0.00 2.29
5982 10714 3.263425 ACTCCTTCCGTTCCACAATACAT 59.737 43.478 0.00 0.00 0.00 2.29
5983 10715 3.605634 TCCTTCCGTTCCACAATACATG 58.394 45.455 0.00 0.00 0.00 3.21
5984 10716 2.097466 CCTTCCGTTCCACAATACATGC 59.903 50.000 0.00 0.00 0.00 4.06
5985 10717 1.745232 TCCGTTCCACAATACATGCC 58.255 50.000 0.00 0.00 0.00 4.40
5986 10718 1.280710 TCCGTTCCACAATACATGCCT 59.719 47.619 0.00 0.00 0.00 4.75
5987 10719 2.091541 CCGTTCCACAATACATGCCTT 58.908 47.619 0.00 0.00 0.00 4.35
5988 10720 2.097466 CCGTTCCACAATACATGCCTTC 59.903 50.000 0.00 0.00 0.00 3.46
5989 10721 2.097466 CGTTCCACAATACATGCCTTCC 59.903 50.000 0.00 0.00 0.00 3.46
5990 10722 3.088532 GTTCCACAATACATGCCTTCCA 58.911 45.455 0.00 0.00 0.00 3.53
5991 10723 3.668141 TCCACAATACATGCCTTCCAT 57.332 42.857 0.00 0.00 33.39 3.41
5992 10724 3.979911 TCCACAATACATGCCTTCCATT 58.020 40.909 0.00 0.00 29.71 3.16
5993 10725 4.352009 TCCACAATACATGCCTTCCATTT 58.648 39.130 0.00 0.00 29.71 2.32
5994 10726 4.160065 TCCACAATACATGCCTTCCATTTG 59.840 41.667 0.00 0.00 29.71 2.32
5995 10727 4.081531 CCACAATACATGCCTTCCATTTGT 60.082 41.667 0.00 0.00 34.39 2.83
5996 10728 5.126869 CCACAATACATGCCTTCCATTTGTA 59.873 40.000 0.00 0.00 33.08 2.41
5997 10729 6.183360 CCACAATACATGCCTTCCATTTGTAT 60.183 38.462 0.00 0.00 33.08 2.29
5998 10730 6.919662 CACAATACATGCCTTCCATTTGTATC 59.080 38.462 0.00 0.00 33.08 2.24
5999 10731 6.835488 ACAATACATGCCTTCCATTTGTATCT 59.165 34.615 0.00 0.00 33.08 1.98
6000 10732 7.998383 ACAATACATGCCTTCCATTTGTATCTA 59.002 33.333 0.00 0.00 33.08 1.98
6001 10733 8.509690 CAATACATGCCTTCCATTTGTATCTAG 58.490 37.037 0.00 0.00 31.60 2.43
6002 10734 6.252599 ACATGCCTTCCATTTGTATCTAGA 57.747 37.500 0.00 0.00 29.71 2.43
6003 10735 6.058183 ACATGCCTTCCATTTGTATCTAGAC 58.942 40.000 0.00 0.00 29.71 2.59
6004 10736 5.692115 TGCCTTCCATTTGTATCTAGACA 57.308 39.130 0.00 0.00 0.00 3.41
6005 10737 6.252599 TGCCTTCCATTTGTATCTAGACAT 57.747 37.500 0.00 0.00 0.00 3.06
6006 10738 6.057533 TGCCTTCCATTTGTATCTAGACATG 58.942 40.000 0.00 0.00 0.00 3.21
6007 10739 6.058183 GCCTTCCATTTGTATCTAGACATGT 58.942 40.000 0.00 0.00 0.00 3.21
6233 11022 2.213499 CACGCAAATATCTGGACCCTC 58.787 52.381 0.00 0.00 0.00 4.30
6336 11128 2.928416 GGAGTTTGACCAAGTCCCG 58.072 57.895 2.27 0.00 46.23 5.14
6358 11151 5.765182 CCGAAAATCCATAAGAGCACCTAAT 59.235 40.000 0.00 0.00 0.00 1.73
6437 12359 2.966516 CTCCCCTACTTCTGGTGGTATC 59.033 54.545 0.00 0.00 0.00 2.24
6439 12361 3.795545 TCCCCTACTTCTGGTGGTATCTA 59.204 47.826 0.00 0.00 0.00 1.98
6569 12517 5.571784 AATACATCTGCAAAGTCACATGG 57.428 39.130 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.355209 GGCTAAAGAGAAGACCCTGGTG 60.355 54.545 0.00 0.00 0.00 4.17
9 10 1.909986 GGCTAAAGAGAAGACCCTGGT 59.090 52.381 0.00 0.00 0.00 4.00
10 11 2.169561 GAGGCTAAAGAGAAGACCCTGG 59.830 54.545 0.00 0.00 0.00 4.45
11 12 2.834549 TGAGGCTAAAGAGAAGACCCTG 59.165 50.000 0.00 0.00 0.00 4.45
12 13 2.835156 GTGAGGCTAAAGAGAAGACCCT 59.165 50.000 0.00 0.00 0.00 4.34
13 14 2.417515 CGTGAGGCTAAAGAGAAGACCC 60.418 54.545 0.00 0.00 0.00 4.46
33 34 0.656205 CGTTTGGCTGGTTTTCGTCG 60.656 55.000 0.00 0.00 0.00 5.12
45 46 1.202098 ACGAACAGTCAAACGTTTGGC 60.202 47.619 32.74 32.74 42.85 4.52
46 47 2.817538 ACGAACAGTCAAACGTTTGG 57.182 45.000 33.97 22.99 38.66 3.28
80 81 1.475403 TCTAGTCCTGCTTCTTCCCG 58.525 55.000 0.00 0.00 0.00 5.14
81 82 3.983044 TTTCTAGTCCTGCTTCTTCCC 57.017 47.619 0.00 0.00 0.00 3.97
82 83 4.878971 GGATTTTCTAGTCCTGCTTCTTCC 59.121 45.833 0.00 0.00 0.00 3.46
83 84 4.878971 GGGATTTTCTAGTCCTGCTTCTTC 59.121 45.833 0.00 0.00 34.84 2.87
84 85 4.289672 TGGGATTTTCTAGTCCTGCTTCTT 59.710 41.667 0.00 0.00 34.84 2.52
96 97 3.335183 TGGGTTGGACATGGGATTTTCTA 59.665 43.478 0.00 0.00 0.00 2.10
120 121 1.812686 TATCCTATCACGCGGTGGCC 61.813 60.000 12.47 0.00 33.87 5.36
121 122 0.388649 CTATCCTATCACGCGGTGGC 60.389 60.000 12.47 0.00 33.87 5.01
140 141 2.093658 TGTGGAGGAAAAGGACGCTATC 60.094 50.000 0.00 0.00 0.00 2.08
141 142 1.906574 TGTGGAGGAAAAGGACGCTAT 59.093 47.619 0.00 0.00 0.00 2.97
146 147 1.605753 GGTGTGTGGAGGAAAAGGAC 58.394 55.000 0.00 0.00 0.00 3.85
152 153 2.847234 AGGCGGTGTGTGGAGGAA 60.847 61.111 0.00 0.00 0.00 3.36
153 154 3.625897 CAGGCGGTGTGTGGAGGA 61.626 66.667 0.00 0.00 0.00 3.71
155 156 4.320456 AGCAGGCGGTGTGTGGAG 62.320 66.667 0.00 0.00 0.00 3.86
164 165 0.813210 GAGGATTTCAGAGCAGGCGG 60.813 60.000 0.00 0.00 0.00 6.13
166 167 1.485895 AGAGAGGATTTCAGAGCAGGC 59.514 52.381 0.00 0.00 0.00 4.85
173 174 3.007290 TGGTCACACAGAGAGGATTTCAG 59.993 47.826 0.00 0.00 0.00 3.02
177 178 5.762179 TTAATGGTCACACAGAGAGGATT 57.238 39.130 0.00 0.00 0.00 3.01
178 179 5.965033 ATTAATGGTCACACAGAGAGGAT 57.035 39.130 0.00 0.00 0.00 3.24
180 181 4.878397 GGAATTAATGGTCACACAGAGAGG 59.122 45.833 0.00 0.00 0.00 3.69
185 186 2.682856 CGGGGAATTAATGGTCACACAG 59.317 50.000 0.00 0.00 0.00 3.66
187 188 2.681344 GACGGGGAATTAATGGTCACAC 59.319 50.000 0.00 0.00 0.00 3.82
188 189 2.678479 CGACGGGGAATTAATGGTCACA 60.678 50.000 0.00 0.00 0.00 3.58
297 298 8.975663 ATTAATCTGCTGATGAGAATTCAAGA 57.024 30.769 8.44 0.00 36.78 3.02
349 353 5.401033 AGTACTGCTACGTATACTGTTCG 57.599 43.478 11.66 0.00 0.00 3.95
367 371 3.269178 AGTACTCGGCTCACAGTAGTAC 58.731 50.000 0.00 0.00 41.71 2.73
369 373 2.493414 AGTACTCGGCTCACAGTAGT 57.507 50.000 0.00 0.00 0.00 2.73
371 375 2.786777 TGAAGTACTCGGCTCACAGTA 58.213 47.619 0.00 0.00 0.00 2.74
372 376 1.617322 TGAAGTACTCGGCTCACAGT 58.383 50.000 0.00 0.00 0.00 3.55
373 377 2.329379 GTTGAAGTACTCGGCTCACAG 58.671 52.381 0.00 0.00 0.00 3.66
374 378 1.335597 CGTTGAAGTACTCGGCTCACA 60.336 52.381 0.00 0.00 0.00 3.58
381 546 0.788391 GTTGGCCGTTGAAGTACTCG 59.212 55.000 0.00 0.00 0.00 4.18
384 549 0.589708 GTGGTTGGCCGTTGAAGTAC 59.410 55.000 0.00 0.00 37.67 2.73
415 580 1.452108 CAAGGACCGCCCCAAGATC 60.452 63.158 0.00 0.00 34.66 2.75
425 590 0.392998 CCCCTCAACATCAAGGACCG 60.393 60.000 0.00 0.00 34.35 4.79
471 636 3.255725 CGCGTTGGGTCAGATTAAGTTA 58.744 45.455 0.00 0.00 0.00 2.24
480 645 4.680237 TGGAGCGCGTTGGGTCAG 62.680 66.667 8.43 0.00 36.17 3.51
598 765 1.532868 CGAACTTCAGGAAACCAGCTG 59.467 52.381 6.78 6.78 0.00 4.24
599 766 1.141053 ACGAACTTCAGGAAACCAGCT 59.859 47.619 0.00 0.00 0.00 4.24
600 767 1.264288 CACGAACTTCAGGAAACCAGC 59.736 52.381 0.00 0.00 0.00 4.85
601 768 2.561569 ACACGAACTTCAGGAAACCAG 58.438 47.619 0.00 0.00 0.00 4.00
602 769 2.702592 ACACGAACTTCAGGAAACCA 57.297 45.000 0.00 0.00 0.00 3.67
605 772 5.379732 AAACAAACACGAACTTCAGGAAA 57.620 34.783 0.00 0.00 0.00 3.13
607 774 4.216687 ACAAAACAAACACGAACTTCAGGA 59.783 37.500 0.00 0.00 0.00 3.86
608 775 4.481463 ACAAAACAAACACGAACTTCAGG 58.519 39.130 0.00 0.00 0.00 3.86
618 788 5.276820 GCTGCCTAATGAACAAAACAAACAC 60.277 40.000 0.00 0.00 0.00 3.32
620 790 4.808364 TGCTGCCTAATGAACAAAACAAAC 59.192 37.500 0.00 0.00 0.00 2.93
624 794 4.022849 AGAGTGCTGCCTAATGAACAAAAC 60.023 41.667 0.00 0.00 0.00 2.43
625 795 4.144297 AGAGTGCTGCCTAATGAACAAAA 58.856 39.130 0.00 0.00 0.00 2.44
626 796 3.753272 GAGAGTGCTGCCTAATGAACAAA 59.247 43.478 0.00 0.00 0.00 2.83
639 1339 3.546670 GGTACGTAATTTCGAGAGTGCTG 59.453 47.826 11.66 0.00 34.70 4.41
662 1362 1.864862 CTGGCTCGTTCTTGTGCTG 59.135 57.895 0.00 0.00 0.00 4.41
681 1381 0.110823 GTTAAGTTGAGTGCGTGCCG 60.111 55.000 0.00 0.00 0.00 5.69
682 1382 1.226746 AGTTAAGTTGAGTGCGTGCC 58.773 50.000 0.00 0.00 0.00 5.01
683 1383 2.286833 TCAAGTTAAGTTGAGTGCGTGC 59.713 45.455 19.59 0.00 32.54 5.34
684 1384 3.303132 GGTCAAGTTAAGTTGAGTGCGTG 60.303 47.826 23.08 0.00 37.12 5.34
685 1385 2.870411 GGTCAAGTTAAGTTGAGTGCGT 59.130 45.455 23.08 0.00 37.12 5.24
686 1386 2.869801 TGGTCAAGTTAAGTTGAGTGCG 59.130 45.455 23.08 0.00 37.12 5.34
687 1387 3.303132 CGTGGTCAAGTTAAGTTGAGTGC 60.303 47.826 23.08 13.10 37.12 4.40
688 1388 3.303132 GCGTGGTCAAGTTAAGTTGAGTG 60.303 47.826 23.08 14.67 37.12 3.51
689 1389 2.870411 GCGTGGTCAAGTTAAGTTGAGT 59.130 45.455 23.08 0.00 37.12 3.41
690 1390 2.223377 GGCGTGGTCAAGTTAAGTTGAG 59.777 50.000 23.08 13.84 37.12 3.02
691 1391 2.215196 GGCGTGGTCAAGTTAAGTTGA 58.785 47.619 19.59 19.59 33.95 3.18
692 1392 1.944024 TGGCGTGGTCAAGTTAAGTTG 59.056 47.619 15.66 15.66 0.00 3.16
693 1393 2.335316 TGGCGTGGTCAAGTTAAGTT 57.665 45.000 0.00 0.00 0.00 2.66
694 1394 2.423577 GATGGCGTGGTCAAGTTAAGT 58.576 47.619 0.00 0.00 0.00 2.24
695 1395 1.393539 CGATGGCGTGGTCAAGTTAAG 59.606 52.381 0.00 0.00 0.00 1.85
729 1429 4.024387 TGTCTTACGTGCTTTTGATTGGTC 60.024 41.667 0.00 0.00 0.00 4.02
730 1430 3.880490 TGTCTTACGTGCTTTTGATTGGT 59.120 39.130 0.00 0.00 0.00 3.67
745 1445 8.831550 GGAATTCTCCAATCATACTTGTCTTAC 58.168 37.037 5.23 0.00 41.96 2.34
835 1543 0.953727 TCACACTCAATTGGCTGTGC 59.046 50.000 22.12 0.00 35.08 4.57
837 1545 1.202855 AGCTCACACTCAATTGGCTGT 60.203 47.619 5.42 4.44 0.00 4.40
916 1624 0.613260 TCCCTTTACATGCTCACGCT 59.387 50.000 0.00 0.00 36.97 5.07
919 1627 2.113860 TGCTCCCTTTACATGCTCAC 57.886 50.000 0.00 0.00 0.00 3.51
922 1630 1.453155 CGTTGCTCCCTTTACATGCT 58.547 50.000 0.00 0.00 0.00 3.79
923 1631 0.451783 CCGTTGCTCCCTTTACATGC 59.548 55.000 0.00 0.00 0.00 4.06
924 1632 2.107950 TCCGTTGCTCCCTTTACATG 57.892 50.000 0.00 0.00 0.00 3.21
926 1634 1.880646 GCTTCCGTTGCTCCCTTTACA 60.881 52.381 0.00 0.00 0.00 2.41
928 1636 0.322187 GGCTTCCGTTGCTCCCTTTA 60.322 55.000 0.00 0.00 0.00 1.85
972 1682 3.121030 CTAGCGCTGGTGTGTGCC 61.121 66.667 22.90 0.00 43.73 5.01
974 1684 0.460109 TATGCTAGCGCTGGTGTGTG 60.460 55.000 22.90 2.31 36.97 3.82
991 1702 1.068083 CCGTCGTCATGGCTGCTAT 59.932 57.895 0.00 0.00 0.00 2.97
1058 1775 2.762887 AGAAGCAGGATGACGATGAGAA 59.237 45.455 0.00 0.00 39.69 2.87
1059 1776 2.100418 CAGAAGCAGGATGACGATGAGA 59.900 50.000 0.00 0.00 39.69 3.27
1063 1780 0.829333 AGCAGAAGCAGGATGACGAT 59.171 50.000 0.00 0.00 45.49 3.73
1069 1786 0.106335 CCGATCAGCAGAAGCAGGAT 59.894 55.000 0.00 0.00 45.49 3.24
1072 1789 2.523507 CGCCGATCAGCAGAAGCAG 61.524 63.158 1.15 0.00 45.49 4.24
1083 1800 2.202703 ACACCGTAAGCGCCGATC 60.203 61.111 2.29 0.00 36.67 3.69
1158 1875 0.544357 TCGTGTCCAAGATCACCCCT 60.544 55.000 0.00 0.00 0.00 4.79
1196 1913 3.129502 CCATGCACGTCCAGCTGG 61.130 66.667 27.87 27.87 0.00 4.85
1328 2045 2.023461 CGTTCACGGCGCAACAAA 59.977 55.556 18.82 0.00 35.37 2.83
1393 3089 3.782656 AAAGCTCCGTCTTTCCCTTAA 57.217 42.857 0.00 0.00 31.07 1.85
1395 3091 2.658807 AAAAGCTCCGTCTTTCCCTT 57.341 45.000 0.00 0.00 35.41 3.95
1396 3092 2.658807 AAAAAGCTCCGTCTTTCCCT 57.341 45.000 0.00 0.00 35.41 4.20
1427 3123 0.765510 AAAGCTCCGTCTTTCCCAGT 59.234 50.000 0.00 0.00 31.07 4.00
1428 3124 1.160137 CAAAGCTCCGTCTTTCCCAG 58.840 55.000 0.00 0.00 34.31 4.45
1430 3126 1.443802 CTCAAAGCTCCGTCTTTCCC 58.556 55.000 0.00 0.00 34.31 3.97
1431 3127 1.002087 TCCTCAAAGCTCCGTCTTTCC 59.998 52.381 0.00 0.00 34.31 3.13
1437 3606 0.038159 CGTCTTCCTCAAAGCTCCGT 60.038 55.000 0.00 0.00 34.76 4.69
1443 3612 0.391793 GCCCTCCGTCTTCCTCAAAG 60.392 60.000 0.00 0.00 36.22 2.77
1491 4290 3.320879 CTCATGCTCGGGCCACAGT 62.321 63.158 3.94 0.00 37.74 3.55
1493 4292 3.321648 ACTCATGCTCGGGCCACA 61.322 61.111 3.94 0.00 37.74 4.17
1529 4328 3.477530 GTTCGGGGGATAGAGAAATTGG 58.522 50.000 0.00 0.00 0.00 3.16
1532 4331 2.055579 GGGTTCGGGGGATAGAGAAAT 58.944 52.381 0.00 0.00 0.00 2.17
1534 4333 0.640495 AGGGTTCGGGGGATAGAGAA 59.360 55.000 0.00 0.00 0.00 2.87
1548 4348 1.304134 GATGGGCCAAACGAGGGTT 60.304 57.895 11.89 0.00 38.22 4.11
1549 4349 2.355115 GATGGGCCAAACGAGGGT 59.645 61.111 11.89 0.00 0.00 4.34
1750 4921 6.036470 GGCTAAGACATTCCAAATTACTTGC 58.964 40.000 0.00 0.00 33.27 4.01
1763 4934 0.466124 GGCTCGAGGGCTAAGACATT 59.534 55.000 15.58 0.00 37.53 2.71
1765 4936 2.058595 GGGCTCGAGGGCTAAGACA 61.059 63.158 15.58 0.00 40.65 3.41
1792 4963 5.634859 CCAGTTCCAAATCAAACTTGTATGC 59.365 40.000 0.00 0.00 33.53 3.14
1793 4964 6.980593 TCCAGTTCCAAATCAAACTTGTATG 58.019 36.000 0.00 0.00 33.53 2.39
1795 4966 5.009610 GCTCCAGTTCCAAATCAAACTTGTA 59.990 40.000 0.00 0.00 33.53 2.41
1796 4967 4.202151 GCTCCAGTTCCAAATCAAACTTGT 60.202 41.667 0.00 0.00 33.53 3.16
1797 4968 4.202141 TGCTCCAGTTCCAAATCAAACTTG 60.202 41.667 0.00 0.00 33.53 3.16
1798 4969 3.960102 TGCTCCAGTTCCAAATCAAACTT 59.040 39.130 0.00 0.00 33.53 2.66
1799 4970 3.565307 TGCTCCAGTTCCAAATCAAACT 58.435 40.909 0.00 0.00 36.16 2.66
1803 5014 3.055458 TCGTATGCTCCAGTTCCAAATCA 60.055 43.478 0.00 0.00 0.00 2.57
1834 5048 8.021396 CCTAGTTTTTCAAGTAAATCGGGAAAG 58.979 37.037 0.00 0.00 0.00 2.62
1840 5054 5.637809 GGCCCTAGTTTTTCAAGTAAATCG 58.362 41.667 0.00 0.00 0.00 3.34
1895 5116 4.815846 ACAAATTCACAGGTGCATTTTTCC 59.184 37.500 7.19 0.00 34.97 3.13
1899 5120 8.367156 AGTAATAACAAATTCACAGGTGCATTT 58.633 29.630 4.55 4.55 37.00 2.32
1908 5129 7.711846 ACAGCACAAGTAATAACAAATTCACA 58.288 30.769 0.00 0.00 0.00 3.58
1924 5145 5.401531 TCTACCCTAACTAACAGCACAAG 57.598 43.478 0.00 0.00 0.00 3.16
1985 5232 5.882000 TGGTTCTCTCATTGATAACACATGG 59.118 40.000 0.00 0.00 34.60 3.66
1996 5243 8.359642 TGGAACTTTTTAATGGTTCTCTCATTG 58.640 33.333 12.26 0.00 39.20 2.82
2006 5257 9.975218 ATATCAGTACTGGAACTTTTTAATGGT 57.025 29.630 22.48 0.00 0.00 3.55
2012 5263 9.959721 ATGTACATATCAGTACTGGAACTTTTT 57.040 29.630 22.48 3.23 43.65 1.94
2018 5269 5.602561 AGGCATGTACATATCAGTACTGGAA 59.397 40.000 22.48 11.36 43.65 3.53
2020 5271 5.474578 AGGCATGTACATATCAGTACTGG 57.525 43.478 22.48 9.03 43.65 4.00
2021 5272 6.981722 TGTAGGCATGTACATATCAGTACTG 58.018 40.000 17.17 17.17 43.65 2.74
2022 5273 6.778069 ACTGTAGGCATGTACATATCAGTACT 59.222 38.462 8.32 0.00 43.65 2.73
2029 5280 6.500589 AGGAAACTGTAGGCATGTACATAT 57.499 37.500 8.32 0.36 41.13 1.78
2037 5288 2.584835 TGCAAGGAAACTGTAGGCAT 57.415 45.000 0.00 0.00 42.68 4.40
2038 5289 2.584835 ATGCAAGGAAACTGTAGGCA 57.415 45.000 0.00 0.00 42.68 4.75
2039 5290 3.578688 CAAATGCAAGGAAACTGTAGGC 58.421 45.455 0.00 0.00 42.68 3.93
2040 5291 3.256631 AGCAAATGCAAGGAAACTGTAGG 59.743 43.478 8.28 0.00 45.16 3.18
2045 5301 4.612264 ATCAAGCAAATGCAAGGAAACT 57.388 36.364 8.28 0.00 45.16 2.66
2046 5302 5.473039 ACTATCAAGCAAATGCAAGGAAAC 58.527 37.500 8.28 0.00 45.16 2.78
2070 5354 9.369904 AGATTTCGCAACAAATTAATGCTTTAT 57.630 25.926 7.99 0.56 37.92 1.40
2071 5355 8.755696 AGATTTCGCAACAAATTAATGCTTTA 57.244 26.923 7.99 0.00 37.92 1.85
2089 5373 8.494347 CCTTATGCATCTTAGAAAGAGATTTCG 58.506 37.037 0.19 0.00 41.61 3.46
2124 5413 4.796830 CGGACATTTTTCAGCAGATCAATG 59.203 41.667 0.00 8.43 33.16 2.82
2133 5422 1.266718 TGCACTCGGACATTTTTCAGC 59.733 47.619 0.00 0.00 0.00 4.26
2166 5455 1.202698 GCCTGAGTTGAAGTCTGTGGT 60.203 52.381 1.30 0.00 0.00 4.16
2196 5485 4.697756 TTGTTCCCCAGCTCCGCG 62.698 66.667 0.00 0.00 0.00 6.46
2205 5494 2.717580 GAACCGTTGATTTGTTCCCC 57.282 50.000 0.00 0.00 33.85 4.81
2229 5518 3.181483 GGCAATCTGCGGAGAATGAAATT 60.181 43.478 24.27 4.29 46.21 1.82
2262 5551 3.477530 GATGAAGTATGGTGTTAGGCCC 58.522 50.000 0.00 0.00 0.00 5.80
2265 5554 3.386726 TCCGGATGAAGTATGGTGTTAGG 59.613 47.826 0.00 0.00 0.00 2.69
2271 5560 1.139058 GCAGTCCGGATGAAGTATGGT 59.861 52.381 7.81 0.00 0.00 3.55
2574 5863 1.321474 CTTCCTGTTTGGCAAGCTGA 58.679 50.000 19.65 11.49 35.26 4.26
2587 5876 0.841961 TGGCTCATCATCCCTTCCTG 59.158 55.000 0.00 0.00 0.00 3.86
2589 5878 0.110104 CCTGGCTCATCATCCCTTCC 59.890 60.000 0.00 0.00 0.00 3.46
2763 6052 2.365617 GGTGCCTGGATTCTCTAATCGA 59.634 50.000 0.00 0.00 42.16 3.59
2798 6087 2.630098 GCATAGAGGCCAGATACTGTGA 59.370 50.000 5.01 0.00 0.00 3.58
2897 6186 6.017109 GTCAAAGTCAGTGGAAGCATTCTTTA 60.017 38.462 0.00 0.00 46.56 1.85
2906 6195 6.459066 TCTATTCTGTCAAAGTCAGTGGAAG 58.541 40.000 0.00 0.00 34.86 3.46
2941 6230 1.229428 TCTCGCAGTTTTTCAGCAGG 58.771 50.000 0.00 0.00 0.00 4.85
2960 6249 6.670695 AAAAATTGACCTTTAGGAGTGCAT 57.329 33.333 2.06 0.00 38.94 3.96
3046 6335 3.476552 TCTCCTGACCAACAATGTTGAC 58.523 45.455 25.93 18.60 0.00 3.18
3157 6446 4.884164 GCCTCTAGGTGCAGTTTCATTATT 59.116 41.667 0.00 0.00 37.57 1.40
3335 6642 3.181483 CCCATCTCCAAACTGCAAATAGC 60.181 47.826 0.00 0.00 45.96 2.97
3340 6647 0.776810 TCCCCATCTCCAAACTGCAA 59.223 50.000 0.00 0.00 0.00 4.08
3341 6648 0.776810 TTCCCCATCTCCAAACTGCA 59.223 50.000 0.00 0.00 0.00 4.41
3354 6661 1.108776 CGTTACTCGATCCTTCCCCA 58.891 55.000 0.00 0.00 42.86 4.96
3522 6996 5.048782 TCTGCCAGCAACACATAAAAGTAAG 60.049 40.000 0.00 0.00 0.00 2.34
3523 6997 4.824537 TCTGCCAGCAACACATAAAAGTAA 59.175 37.500 0.00 0.00 0.00 2.24
3524 6998 4.393834 TCTGCCAGCAACACATAAAAGTA 58.606 39.130 0.00 0.00 0.00 2.24
3526 7000 3.503363 TCTCTGCCAGCAACACATAAAAG 59.497 43.478 0.00 0.00 0.00 2.27
3642 8239 0.107831 CGGTCCTGAACTGGAACCAA 59.892 55.000 9.54 0.00 40.60 3.67
3692 8289 2.026822 CCATAGGTCAGCTGTCAAAGGT 60.027 50.000 14.67 0.00 36.97 3.50
3801 8398 5.835280 AGAAAACTGATCCAATTTGACTGGT 59.165 36.000 0.00 0.00 35.30 4.00
3821 8418 6.732896 AGTGTTGAGAAGGAGAAGTAGAAA 57.267 37.500 0.00 0.00 0.00 2.52
4091 8688 2.929043 AGGGGAGTCAAAGGGAATCATT 59.071 45.455 0.00 0.00 42.30 2.57
4261 8858 5.237048 ACTGTTCAACAACTGCAAAAATGT 58.763 33.333 0.00 0.00 35.40 2.71
4269 8866 2.872245 TGAGCTACTGTTCAACAACTGC 59.128 45.455 0.00 0.00 35.40 4.40
4288 8886 9.527157 TCTAGGATTTAACCATGTCAAAAATGA 57.473 29.630 0.00 0.00 0.00 2.57
4344 8942 1.271102 GGCTACTAGAAGGATCCTGCG 59.729 57.143 17.02 3.79 0.00 5.18
4462 9096 6.770785 AGTTGTCCTTTAGCAAGTTCACATAA 59.229 34.615 0.00 0.00 0.00 1.90
4472 9106 3.550820 TCTTGCAGTTGTCCTTTAGCAA 58.449 40.909 0.00 0.00 39.38 3.91
4507 9158 5.122239 TGATCGTGCATTTTAGGTTCTTGAG 59.878 40.000 0.00 0.00 0.00 3.02
4544 9202 5.543507 AAACCAATAAAATCAGCACCACA 57.456 34.783 0.00 0.00 0.00 4.17
4560 9220 6.243148 GGAGTAGTTCCCAATAGAAAACCAA 58.757 40.000 0.00 0.00 40.37 3.67
4582 9242 7.850935 AATCTTATAATAGTGAACGGAGGGA 57.149 36.000 0.00 0.00 0.00 4.20
4583 9243 8.904099 AAAATCTTATAATAGTGAACGGAGGG 57.096 34.615 0.00 0.00 0.00 4.30
4584 9244 9.765795 AGAAAATCTTATAATAGTGAACGGAGG 57.234 33.333 0.00 0.00 0.00 4.30
4626 9286 8.512138 GGCTAACAAATACACTAAAATGTGTCT 58.488 33.333 3.46 0.00 46.90 3.41
4627 9287 7.753580 GGGCTAACAAATACACTAAAATGTGTC 59.246 37.037 3.46 0.00 46.90 3.67
4629 9289 7.598278 TGGGCTAACAAATACACTAAAATGTG 58.402 34.615 0.00 0.00 43.07 3.21
4630 9290 7.768807 TGGGCTAACAAATACACTAAAATGT 57.231 32.000 0.00 0.00 36.56 2.71
4631 9291 9.651913 AAATGGGCTAACAAATACACTAAAATG 57.348 29.630 0.00 0.00 0.00 2.32
4632 9292 9.869757 GAAATGGGCTAACAAATACACTAAAAT 57.130 29.630 0.00 0.00 0.00 1.82
4633 9293 8.861086 TGAAATGGGCTAACAAATACACTAAAA 58.139 29.630 0.00 0.00 0.00 1.52
4634 9294 8.410673 TGAAATGGGCTAACAAATACACTAAA 57.589 30.769 0.00 0.00 0.00 1.85
4635 9295 7.668052 ACTGAAATGGGCTAACAAATACACTAA 59.332 33.333 0.00 0.00 0.00 2.24
4636 9296 7.172342 ACTGAAATGGGCTAACAAATACACTA 58.828 34.615 0.00 0.00 0.00 2.74
4637 9297 6.010219 ACTGAAATGGGCTAACAAATACACT 58.990 36.000 0.00 0.00 0.00 3.55
4638 9298 6.151144 AGACTGAAATGGGCTAACAAATACAC 59.849 38.462 0.00 0.00 0.00 2.90
4639 9299 6.150976 CAGACTGAAATGGGCTAACAAATACA 59.849 38.462 0.00 0.00 0.00 2.29
4640 9300 6.151144 ACAGACTGAAATGGGCTAACAAATAC 59.849 38.462 10.08 0.00 0.00 1.89
4641 9301 6.245408 ACAGACTGAAATGGGCTAACAAATA 58.755 36.000 10.08 0.00 0.00 1.40
4642 9302 5.079643 ACAGACTGAAATGGGCTAACAAAT 58.920 37.500 10.08 0.00 0.00 2.32
4643 9303 4.469657 ACAGACTGAAATGGGCTAACAAA 58.530 39.130 10.08 0.00 0.00 2.83
4644 9304 4.098914 ACAGACTGAAATGGGCTAACAA 57.901 40.909 10.08 0.00 0.00 2.83
4645 9305 3.788227 ACAGACTGAAATGGGCTAACA 57.212 42.857 10.08 0.00 0.00 2.41
4646 9306 5.186198 ACATACAGACTGAAATGGGCTAAC 58.814 41.667 10.08 0.00 0.00 2.34
4647 9307 5.435686 ACATACAGACTGAAATGGGCTAA 57.564 39.130 10.08 0.00 0.00 3.09
4648 9308 5.661312 ACTACATACAGACTGAAATGGGCTA 59.339 40.000 10.08 1.50 0.00 3.93
4649 9309 4.471386 ACTACATACAGACTGAAATGGGCT 59.529 41.667 10.08 0.45 0.00 5.19
4650 9310 4.770795 ACTACATACAGACTGAAATGGGC 58.229 43.478 10.08 0.00 0.00 5.36
4651 9311 6.406370 TCAACTACATACAGACTGAAATGGG 58.594 40.000 10.08 11.25 0.00 4.00
4652 9312 9.770097 ATATCAACTACATACAGACTGAAATGG 57.230 33.333 10.08 3.93 0.00 3.16
4700 9360 9.621239 TCTTCTACTCCCTCCATTCATAAATAT 57.379 33.333 0.00 0.00 0.00 1.28
4701 9361 8.871125 GTCTTCTACTCCCTCCATTCATAAATA 58.129 37.037 0.00 0.00 0.00 1.40
4702 9362 7.570607 AGTCTTCTACTCCCTCCATTCATAAAT 59.429 37.037 0.00 0.00 30.33 1.40
4703 9363 6.903534 AGTCTTCTACTCCCTCCATTCATAAA 59.096 38.462 0.00 0.00 30.33 1.40
4704 9364 6.444704 AGTCTTCTACTCCCTCCATTCATAA 58.555 40.000 0.00 0.00 30.33 1.90
4705 9365 6.031964 AGTCTTCTACTCCCTCCATTCATA 57.968 41.667 0.00 0.00 30.33 2.15
4706 9366 4.889780 AGTCTTCTACTCCCTCCATTCAT 58.110 43.478 0.00 0.00 30.33 2.57
4707 9367 4.338795 AGTCTTCTACTCCCTCCATTCA 57.661 45.455 0.00 0.00 30.33 2.57
4708 9368 4.682050 GCAAGTCTTCTACTCCCTCCATTC 60.682 50.000 0.00 0.00 37.50 2.67
4709 9369 3.198853 GCAAGTCTTCTACTCCCTCCATT 59.801 47.826 0.00 0.00 37.50 3.16
4710 9370 2.769095 GCAAGTCTTCTACTCCCTCCAT 59.231 50.000 0.00 0.00 37.50 3.41
4711 9371 2.180276 GCAAGTCTTCTACTCCCTCCA 58.820 52.381 0.00 0.00 37.50 3.86
4712 9372 2.462723 AGCAAGTCTTCTACTCCCTCC 58.537 52.381 0.00 0.00 37.50 4.30
4713 9373 3.855858 CAAGCAAGTCTTCTACTCCCTC 58.144 50.000 0.00 0.00 37.50 4.30
4714 9374 2.027653 GCAAGCAAGTCTTCTACTCCCT 60.028 50.000 0.00 0.00 37.50 4.20
4715 9375 2.027653 AGCAAGCAAGTCTTCTACTCCC 60.028 50.000 0.00 0.00 37.50 4.30
4716 9376 3.326836 AGCAAGCAAGTCTTCTACTCC 57.673 47.619 0.00 0.00 37.50 3.85
4717 9377 6.591834 TCAATAAGCAAGCAAGTCTTCTACTC 59.408 38.462 0.00 0.00 37.50 2.59
4718 9378 6.467677 TCAATAAGCAAGCAAGTCTTCTACT 58.532 36.000 0.00 0.00 41.49 2.57
4719 9379 6.727824 TCAATAAGCAAGCAAGTCTTCTAC 57.272 37.500 0.00 0.00 31.27 2.59
4720 9380 6.936900 ACTTCAATAAGCAAGCAAGTCTTCTA 59.063 34.615 0.00 0.00 36.05 2.10
4721 9381 5.767168 ACTTCAATAAGCAAGCAAGTCTTCT 59.233 36.000 0.00 0.00 36.05 2.85
4722 9382 6.006759 ACTTCAATAAGCAAGCAAGTCTTC 57.993 37.500 0.00 0.00 36.05 2.87
4769 9433 9.793259 AAACTAGATGAAAACCTGATCAAGTAA 57.207 29.630 0.00 0.00 0.00 2.24
4835 9512 9.948964 TTGATCATAATATTCCATCGTTCTGAT 57.051 29.630 0.00 0.00 38.01 2.90
4890 9598 7.226441 AGGCAGTAATATTAATCACTCATGCA 58.774 34.615 0.00 0.00 0.00 3.96
4918 9626 2.279935 ACACCAGCCCAAAATAACGA 57.720 45.000 0.00 0.00 0.00 3.85
4997 9712 6.314896 AGCACACAATAGAGTATCAGAAAAGC 59.685 38.462 0.00 0.00 37.82 3.51
5008 9723 4.021104 TGCAGAGTTAGCACACAATAGAGT 60.021 41.667 0.00 0.00 37.02 3.24
5012 9727 3.599343 CCTGCAGAGTTAGCACACAATA 58.401 45.455 17.39 0.00 37.02 1.90
5038 9753 1.077357 GAGTGGAGAGCCTCGAGGA 60.077 63.158 35.69 10.23 37.39 3.71
5176 9891 2.787473 AGCTGTGCAATGTAAGGCTA 57.213 45.000 0.00 0.00 0.00 3.93
5494 10209 1.003696 CCTGGTGTTCCTTCTCCTTCC 59.996 57.143 0.00 0.00 34.23 3.46
5575 10290 3.054508 AGGAAGCTGCTCTATTTTGCTCT 60.055 43.478 1.00 0.00 33.10 4.09
5616 10331 1.413118 TATCTGCCTCCTGCGAATCA 58.587 50.000 0.00 0.00 45.60 2.57
5620 10335 1.329913 TGCTTATCTGCCTCCTGCGA 61.330 55.000 0.00 0.00 45.60 5.10
5629 10344 5.762218 AGTAGTTCATTCCATGCTTATCTGC 59.238 40.000 0.00 0.00 0.00 4.26
5672 10387 6.770746 ACTACATTACATCGGACAGTAAGT 57.229 37.500 9.72 9.71 34.10 2.24
5763 10480 2.676632 GCATCAATTGCCAATGTGGA 57.323 45.000 0.00 0.00 46.15 4.02
5782 10501 2.432510 AGAATCCCTTCCTCGCAACTAG 59.567 50.000 0.00 0.00 31.27 2.57
5797 10519 4.574013 CAGAAACCACTAGCATCAGAATCC 59.426 45.833 0.00 0.00 0.00 3.01
5810 10532 3.199946 TCACAGGTTCTTCAGAAACCACT 59.800 43.478 6.76 0.00 42.53 4.00
5823 10545 1.002544 AGGCTAGCACTTCACAGGTTC 59.997 52.381 18.24 0.00 0.00 3.62
5831 10553 2.208431 CAGCATACAGGCTAGCACTTC 58.792 52.381 18.24 0.00 43.68 3.01
5880 10602 5.782255 ACAAAACGACGTCATTCGATAATC 58.218 37.500 17.16 0.00 41.78 1.75
5899 10621 3.153369 ACATATGTGGCACCTGACAAA 57.847 42.857 16.26 0.00 32.99 2.83
5904 10626 3.940209 AAACAACATATGTGGCACCTG 57.060 42.857 16.26 12.28 42.99 4.00
5961 10693 3.328382 TGTATTGTGGAACGGAAGGAG 57.672 47.619 0.00 0.00 42.39 3.69
5962 10694 3.605634 CATGTATTGTGGAACGGAAGGA 58.394 45.455 0.00 0.00 42.39 3.36
5963 10695 2.097466 GCATGTATTGTGGAACGGAAGG 59.903 50.000 0.00 0.00 42.39 3.46
5964 10696 2.097466 GGCATGTATTGTGGAACGGAAG 59.903 50.000 0.00 0.00 42.39 3.46
5965 10697 2.088423 GGCATGTATTGTGGAACGGAA 58.912 47.619 0.00 0.00 42.39 4.30
5966 10698 1.280710 AGGCATGTATTGTGGAACGGA 59.719 47.619 0.00 0.00 42.39 4.69
5967 10699 1.750193 AGGCATGTATTGTGGAACGG 58.250 50.000 0.00 0.00 42.39 4.44
5968 10700 2.097466 GGAAGGCATGTATTGTGGAACG 59.903 50.000 0.00 0.00 42.39 3.95
5969 10701 3.088532 TGGAAGGCATGTATTGTGGAAC 58.911 45.455 0.00 0.00 37.35 3.62
5970 10702 3.448093 TGGAAGGCATGTATTGTGGAA 57.552 42.857 0.00 0.00 0.00 3.53
5971 10703 3.668141 ATGGAAGGCATGTATTGTGGA 57.332 42.857 0.00 0.00 0.00 4.02
5972 10704 4.081531 ACAAATGGAAGGCATGTATTGTGG 60.082 41.667 0.00 0.00 0.00 4.17
5973 10705 5.075858 ACAAATGGAAGGCATGTATTGTG 57.924 39.130 0.00 0.00 0.00 3.33
5974 10706 6.835488 AGATACAAATGGAAGGCATGTATTGT 59.165 34.615 0.00 0.00 37.33 2.71
5975 10707 7.281040 AGATACAAATGGAAGGCATGTATTG 57.719 36.000 0.00 0.00 37.33 1.90
5976 10708 8.439971 TCTAGATACAAATGGAAGGCATGTATT 58.560 33.333 0.00 0.00 37.33 1.89
5977 10709 7.880195 GTCTAGATACAAATGGAAGGCATGTAT 59.120 37.037 0.00 0.00 39.27 2.29
5978 10710 7.147567 TGTCTAGATACAAATGGAAGGCATGTA 60.148 37.037 0.00 0.00 0.00 2.29
5979 10711 6.058183 GTCTAGATACAAATGGAAGGCATGT 58.942 40.000 0.00 0.00 0.00 3.21
5980 10712 6.057533 TGTCTAGATACAAATGGAAGGCATG 58.942 40.000 0.00 0.00 0.00 4.06
5981 10713 6.252599 TGTCTAGATACAAATGGAAGGCAT 57.747 37.500 0.00 0.00 0.00 4.40
5982 10714 5.692115 TGTCTAGATACAAATGGAAGGCA 57.308 39.130 0.00 0.00 0.00 4.75
5983 10715 6.058183 ACATGTCTAGATACAAATGGAAGGC 58.942 40.000 0.00 0.00 32.02 4.35
5984 10716 9.265901 CTTACATGTCTAGATACAAATGGAAGG 57.734 37.037 0.00 3.36 31.14 3.46
5985 10717 9.265901 CCTTACATGTCTAGATACAAATGGAAG 57.734 37.037 0.00 14.36 33.13 3.46
5986 10718 8.988060 TCCTTACATGTCTAGATACAAATGGAA 58.012 33.333 0.00 0.00 32.02 3.53
5987 10719 8.421784 GTCCTTACATGTCTAGATACAAATGGA 58.578 37.037 0.00 0.00 32.02 3.41
5988 10720 7.382488 CGTCCTTACATGTCTAGATACAAATGG 59.618 40.741 0.00 0.00 32.02 3.16
5989 10721 7.096023 GCGTCCTTACATGTCTAGATACAAATG 60.096 40.741 0.00 0.00 32.02 2.32
5990 10722 6.924060 GCGTCCTTACATGTCTAGATACAAAT 59.076 38.462 0.00 0.00 32.02 2.32
5991 10723 6.270815 GCGTCCTTACATGTCTAGATACAAA 58.729 40.000 0.00 0.00 32.02 2.83
5992 10724 5.505159 CGCGTCCTTACATGTCTAGATACAA 60.505 44.000 0.00 0.00 32.02 2.41
5993 10725 4.024302 CGCGTCCTTACATGTCTAGATACA 60.024 45.833 0.00 0.00 0.00 2.29
5994 10726 4.212847 TCGCGTCCTTACATGTCTAGATAC 59.787 45.833 5.77 2.97 0.00 2.24
5995 10727 4.212847 GTCGCGTCCTTACATGTCTAGATA 59.787 45.833 5.77 0.00 0.00 1.98
5996 10728 3.003482 GTCGCGTCCTTACATGTCTAGAT 59.997 47.826 5.77 0.00 0.00 1.98
5997 10729 2.353889 GTCGCGTCCTTACATGTCTAGA 59.646 50.000 5.77 0.00 0.00 2.43
5998 10730 2.355132 AGTCGCGTCCTTACATGTCTAG 59.645 50.000 5.77 0.76 0.00 2.43
5999 10731 2.353889 GAGTCGCGTCCTTACATGTCTA 59.646 50.000 5.77 0.00 0.00 2.59
6000 10732 1.132643 GAGTCGCGTCCTTACATGTCT 59.867 52.381 5.77 0.00 0.00 3.41
6001 10733 1.546834 GAGTCGCGTCCTTACATGTC 58.453 55.000 5.77 0.00 0.00 3.06
6002 10734 0.179171 CGAGTCGCGTCCTTACATGT 60.179 55.000 5.77 2.69 34.64 3.21
6003 10735 0.866061 CCGAGTCGCGTCCTTACATG 60.866 60.000 7.12 0.00 38.67 3.21
6004 10736 1.310933 ACCGAGTCGCGTCCTTACAT 61.311 55.000 7.12 0.00 38.67 2.29
6005 10737 1.968017 ACCGAGTCGCGTCCTTACA 60.968 57.895 7.12 0.00 38.67 2.41
6006 10738 1.513586 CACCGAGTCGCGTCCTTAC 60.514 63.158 7.12 0.00 38.67 2.34
6007 10739 2.693762 CCACCGAGTCGCGTCCTTA 61.694 63.158 7.12 0.00 38.67 2.69
6148 10904 0.386731 CGTGGGGTGCGTTTTGATTC 60.387 55.000 0.00 0.00 0.00 2.52
6194 10964 1.259840 GGGTTAGCGTAGGGTGGACA 61.260 60.000 0.00 0.00 0.00 4.02
6233 11022 0.620121 AGAAGGAGAAGCAGGGGAGG 60.620 60.000 0.00 0.00 0.00 4.30
6336 11128 9.213799 CTCTATTAGGTGCTCTTATGGATTTTC 57.786 37.037 0.00 0.00 0.00 2.29
6419 11467 6.555463 TTTTAGATACCACCAGAAGTAGGG 57.445 41.667 0.00 0.00 0.00 3.53
6437 12359 8.465201 CATGAGGGAAAGGAAGAAGATTTTTAG 58.535 37.037 0.00 0.00 0.00 1.85
6439 12361 6.212187 CCATGAGGGAAAGGAAGAAGATTTTT 59.788 38.462 0.00 0.00 40.01 1.94
6569 12517 7.334671 TGTTCTTCCAATTTTAACCCAACAAAC 59.665 33.333 0.00 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.