Multiple sequence alignment - TraesCS5B01G216900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G216900 chr5B 100.000 3017 0 0 1 3017 391143731 391146747 0.000000e+00 5572.0
1 TraesCS5B01G216900 chr5B 86.598 194 24 2 2825 3017 391299415 391299607 2.360000e-51 213.0
2 TraesCS5B01G216900 chr5B 84.021 194 29 2 2825 3017 391444421 391444613 5.140000e-43 185.0
3 TraesCS5B01G216900 chr5B 84.828 145 22 0 1001 1145 585835965 585835821 2.420000e-31 147.0
4 TraesCS5B01G216900 chr5D 88.539 1649 77 38 718 2281 334254908 334256529 0.000000e+00 1895.0
5 TraesCS5B01G216900 chr5D 90.496 726 53 4 2307 3017 334256646 334257370 0.000000e+00 944.0
6 TraesCS5B01G216900 chr5D 85.492 193 28 0 2825 3017 334301962 334302154 5.100000e-48 202.0
7 TraesCS5B01G216900 chr5D 84.138 145 23 0 1001 1145 478222934 478222790 1.130000e-29 141.0
8 TraesCS5B01G216900 chr5D 95.238 42 2 0 1 42 334254097 334254138 1.940000e-07 67.6
9 TraesCS5B01G216900 chr5A 86.871 1729 81 65 645 2312 436088828 436090471 0.000000e+00 1801.0
10 TraesCS5B01G216900 chr5A 87.519 673 58 17 2355 3017 436090601 436091257 0.000000e+00 754.0
11 TraesCS5B01G216900 chr5A 86.082 194 25 2 2825 3017 436176500 436176692 1.100000e-49 207.0
12 TraesCS5B01G216900 chr5A 82.759 145 25 0 1001 1145 597330182 597330038 2.440000e-26 130.0
13 TraesCS5B01G216900 chr4A 93.407 182 12 0 457 638 584141794 584141975 1.380000e-68 270.0
14 TraesCS5B01G216900 chr7D 91.837 196 8 3 161 356 313504456 313504269 1.780000e-67 267.0
15 TraesCS5B01G216900 chr7D 86.190 210 29 0 1227 1436 524915884 524915675 8.410000e-56 228.0
16 TraesCS5B01G216900 chr4D 94.969 159 8 0 479 637 486785899 486785741 1.800000e-62 250.0
17 TraesCS5B01G216900 chr6D 91.667 180 14 1 458 636 427752809 427752630 6.460000e-62 248.0
18 TraesCS5B01G216900 chr6D 90.751 173 14 1 458 628 427727747 427727575 2.340000e-56 230.0
19 TraesCS5B01G216900 chr6D 89.552 67 7 0 359 425 32414486 32414420 5.360000e-13 86.1
20 TraesCS5B01G216900 chr6A 90.811 185 16 1 458 641 572318246 572318430 2.320000e-61 246.0
21 TraesCS5B01G216900 chr7A 85.714 210 30 0 1227 1436 604853731 604853522 3.910000e-54 222.0
22 TraesCS5B01G216900 chr7B 85.238 210 31 0 1227 1436 561280623 561280414 1.820000e-52 217.0
23 TraesCS5B01G216900 chr7B 80.102 196 35 4 1239 1432 77432170 77432363 3.140000e-30 143.0
24 TraesCS5B01G216900 chr1B 76.298 443 84 13 1000 1436 631967719 631967292 1.820000e-52 217.0
25 TraesCS5B01G216900 chr1B 92.308 52 4 0 358 409 24649369 24649318 1.160000e-09 75.0
26 TraesCS5B01G216900 chr1D 75.778 450 90 16 999 1436 459880644 459880202 3.050000e-50 209.0
27 TraesCS5B01G216900 chr1A 75.785 446 88 15 999 1436 551593138 551592705 1.100000e-49 207.0
28 TraesCS5B01G216900 chr3A 87.097 124 13 3 1003 1125 489311960 489311839 1.460000e-28 137.0
29 TraesCS5B01G216900 chr3B 83.333 144 19 5 1003 1144 478323390 478323250 8.780000e-26 128.0
30 TraesCS5B01G216900 chr3D 80.473 169 27 6 979 1144 367236986 367236821 1.140000e-24 124.0
31 TraesCS5B01G216900 chr3D 93.750 48 2 1 110 157 47355367 47355321 1.500000e-08 71.3
32 TraesCS5B01G216900 chrUn 84.956 113 11 3 52 159 2389845 2389956 3.180000e-20 110.0
33 TraesCS5B01G216900 chr2A 100.000 38 0 0 119 156 761562811 761562848 1.500000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G216900 chr5B 391143731 391146747 3016 False 5572.000000 5572 100.000000 1 3017 1 chr5B.!!$F1 3016
1 TraesCS5B01G216900 chr5D 334254097 334257370 3273 False 968.866667 1895 91.424333 1 3017 3 chr5D.!!$F2 3016
2 TraesCS5B01G216900 chr5A 436088828 436091257 2429 False 1277.500000 1801 87.195000 645 3017 2 chr5A.!!$F2 2372

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
302 303 0.035317 TTGATGAGAGCAAGCCACGT 59.965 50.0 0.0 0.0 0.0 4.49 F
379 380 0.035739 TCGTCCAACCAAACTAGGCC 59.964 55.0 0.0 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1965 2734 0.188587 ACACTGAGTCCACTCCTGGA 59.811 55.0 4.25 0.0 45.11 3.86 R
2245 3029 0.538057 TGGGAAAGCAGCTTCACCAG 60.538 55.0 21.15 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 9.937175 GTTGAATAAGTTGAATAATGCTAGACC 57.063 33.333 0.00 0.00 0.00 3.85
65 66 9.905713 TTGAATAAGTTGAATAATGCTAGACCT 57.094 29.630 0.00 0.00 0.00 3.85
68 69 9.477484 AATAAGTTGAATAATGCTAGACCTACG 57.523 33.333 0.00 0.00 0.00 3.51
69 70 6.466885 AGTTGAATAATGCTAGACCTACGT 57.533 37.500 0.00 0.00 0.00 3.57
70 71 6.273825 AGTTGAATAATGCTAGACCTACGTG 58.726 40.000 0.00 0.00 0.00 4.49
71 72 5.196341 TGAATAATGCTAGACCTACGTGG 57.804 43.478 0.00 0.00 42.93 4.94
90 91 6.406093 CGTGGTCTATCTACGTAATCCTAG 57.594 45.833 0.00 0.00 44.07 3.02
91 92 5.350914 CGTGGTCTATCTACGTAATCCTAGG 59.649 48.000 0.82 0.82 44.07 3.02
92 93 6.237154 GTGGTCTATCTACGTAATCCTAGGT 58.763 44.000 9.08 0.00 0.00 3.08
93 94 6.714356 GTGGTCTATCTACGTAATCCTAGGTT 59.286 42.308 9.08 5.30 0.00 3.50
94 95 7.880195 GTGGTCTATCTACGTAATCCTAGGTTA 59.120 40.741 9.08 4.29 0.00 2.85
95 96 8.609483 TGGTCTATCTACGTAATCCTAGGTTAT 58.391 37.037 9.08 0.00 0.00 1.89
96 97 8.891720 GGTCTATCTACGTAATCCTAGGTTATG 58.108 40.741 9.08 13.60 0.00 1.90
97 98 8.397148 GTCTATCTACGTAATCCTAGGTTATGC 58.603 40.741 9.08 0.00 0.00 3.14
98 99 5.972107 TCTACGTAATCCTAGGTTATGCC 57.028 43.478 9.08 0.00 37.58 4.40
99 100 4.768968 TCTACGTAATCCTAGGTTATGCCC 59.231 45.833 9.08 0.00 38.26 5.36
100 101 3.584294 ACGTAATCCTAGGTTATGCCCT 58.416 45.455 9.08 0.00 38.26 5.19
101 102 3.971971 ACGTAATCCTAGGTTATGCCCTT 59.028 43.478 9.08 0.00 38.26 3.95
102 103 4.411212 ACGTAATCCTAGGTTATGCCCTTT 59.589 41.667 9.08 0.00 38.26 3.11
103 104 4.995487 CGTAATCCTAGGTTATGCCCTTTC 59.005 45.833 9.08 0.00 38.26 2.62
104 105 5.221661 CGTAATCCTAGGTTATGCCCTTTCT 60.222 44.000 9.08 0.00 38.26 2.52
105 106 6.014840 CGTAATCCTAGGTTATGCCCTTTCTA 60.015 42.308 9.08 0.00 38.26 2.10
106 107 6.841781 AATCCTAGGTTATGCCCTTTCTAA 57.158 37.500 9.08 0.00 38.26 2.10
107 108 6.841781 ATCCTAGGTTATGCCCTTTCTAAA 57.158 37.500 9.08 0.00 38.26 1.85
108 109 5.997843 TCCTAGGTTATGCCCTTTCTAAAC 58.002 41.667 9.08 0.00 38.26 2.01
109 110 5.729718 TCCTAGGTTATGCCCTTTCTAAACT 59.270 40.000 9.08 0.00 38.26 2.66
110 111 6.904654 TCCTAGGTTATGCCCTTTCTAAACTA 59.095 38.462 9.08 0.00 38.26 2.24
111 112 7.403813 TCCTAGGTTATGCCCTTTCTAAACTAA 59.596 37.037 9.08 0.00 38.26 2.24
112 113 8.218488 CCTAGGTTATGCCCTTTCTAAACTAAT 58.782 37.037 0.00 0.00 38.26 1.73
113 114 9.274206 CTAGGTTATGCCCTTTCTAAACTAATC 57.726 37.037 0.00 0.00 38.26 1.75
114 115 7.639378 AGGTTATGCCCTTTCTAAACTAATCA 58.361 34.615 0.00 0.00 38.26 2.57
115 116 7.775561 AGGTTATGCCCTTTCTAAACTAATCAG 59.224 37.037 0.00 0.00 38.26 2.90
116 117 7.773690 GGTTATGCCCTTTCTAAACTAATCAGA 59.226 37.037 0.00 0.00 0.00 3.27
117 118 8.613482 GTTATGCCCTTTCTAAACTAATCAGAC 58.387 37.037 0.00 0.00 0.00 3.51
118 119 5.497474 TGCCCTTTCTAAACTAATCAGACC 58.503 41.667 0.00 0.00 0.00 3.85
119 120 4.882427 GCCCTTTCTAAACTAATCAGACCC 59.118 45.833 0.00 0.00 0.00 4.46
120 121 5.437946 CCCTTTCTAAACTAATCAGACCCC 58.562 45.833 0.00 0.00 0.00 4.95
121 122 5.437946 CCTTTCTAAACTAATCAGACCCCC 58.562 45.833 0.00 0.00 0.00 5.40
136 137 3.281332 CCCCCATGATTTTCACGGT 57.719 52.632 0.00 0.00 25.17 4.83
137 138 0.817013 CCCCCATGATTTTCACGGTG 59.183 55.000 0.56 0.56 25.17 4.94
138 139 1.544724 CCCCATGATTTTCACGGTGT 58.455 50.000 8.17 0.00 25.17 4.16
139 140 1.202114 CCCCATGATTTTCACGGTGTG 59.798 52.381 8.17 0.00 25.17 3.82
140 141 1.202114 CCCATGATTTTCACGGTGTGG 59.798 52.381 8.17 6.38 33.87 4.17
141 142 1.202114 CCATGATTTTCACGGTGTGGG 59.798 52.381 8.17 0.00 33.87 4.61
142 143 0.887933 ATGATTTTCACGGTGTGGGC 59.112 50.000 8.17 0.00 33.87 5.36
143 144 1.175983 TGATTTTCACGGTGTGGGCC 61.176 55.000 8.17 0.00 33.87 5.80
144 145 0.893727 GATTTTCACGGTGTGGGCCT 60.894 55.000 4.53 0.00 33.87 5.19
145 146 1.178534 ATTTTCACGGTGTGGGCCTG 61.179 55.000 4.53 0.00 33.87 4.85
146 147 3.783362 TTTCACGGTGTGGGCCTGG 62.783 63.158 4.53 0.00 33.87 4.45
160 161 2.967599 GCCTGGGCCTAATTTTTCAG 57.032 50.000 4.53 0.00 34.56 3.02
161 162 2.456577 GCCTGGGCCTAATTTTTCAGA 58.543 47.619 4.53 0.00 34.56 3.27
162 163 2.428530 GCCTGGGCCTAATTTTTCAGAG 59.571 50.000 4.53 0.00 34.56 3.35
163 164 2.428530 CCTGGGCCTAATTTTTCAGAGC 59.571 50.000 4.53 0.00 0.00 4.09
164 165 3.359950 CTGGGCCTAATTTTTCAGAGCT 58.640 45.455 4.53 0.00 0.00 4.09
165 166 3.766051 CTGGGCCTAATTTTTCAGAGCTT 59.234 43.478 4.53 0.00 0.00 3.74
166 167 4.159557 TGGGCCTAATTTTTCAGAGCTTT 58.840 39.130 4.53 0.00 0.00 3.51
167 168 4.021192 TGGGCCTAATTTTTCAGAGCTTTG 60.021 41.667 4.53 0.00 0.00 2.77
168 169 3.928992 GGCCTAATTTTTCAGAGCTTTGC 59.071 43.478 0.00 0.00 0.00 3.68
169 170 4.322273 GGCCTAATTTTTCAGAGCTTTGCT 60.322 41.667 0.00 0.00 43.88 3.91
170 171 5.105756 GGCCTAATTTTTCAGAGCTTTGCTA 60.106 40.000 0.00 0.00 39.88 3.49
171 172 5.802451 GCCTAATTTTTCAGAGCTTTGCTAC 59.198 40.000 0.00 0.00 39.88 3.58
172 173 6.570378 GCCTAATTTTTCAGAGCTTTGCTACA 60.570 38.462 0.00 0.00 39.88 2.74
173 174 7.542025 CCTAATTTTTCAGAGCTTTGCTACAT 58.458 34.615 0.00 0.00 39.88 2.29
174 175 7.699812 CCTAATTTTTCAGAGCTTTGCTACATC 59.300 37.037 0.00 0.00 39.88 3.06
175 176 6.830873 ATTTTTCAGAGCTTTGCTACATCT 57.169 33.333 0.00 0.00 39.88 2.90
176 177 7.928307 ATTTTTCAGAGCTTTGCTACATCTA 57.072 32.000 0.00 0.00 39.88 1.98
177 178 6.727824 TTTTCAGAGCTTTGCTACATCTAC 57.272 37.500 0.00 0.00 39.88 2.59
178 179 4.033990 TCAGAGCTTTGCTACATCTACG 57.966 45.455 0.00 0.00 39.88 3.51
179 180 3.444034 TCAGAGCTTTGCTACATCTACGT 59.556 43.478 0.00 0.00 39.88 3.57
180 181 4.638865 TCAGAGCTTTGCTACATCTACGTA 59.361 41.667 0.00 0.00 39.88 3.57
181 182 5.124936 TCAGAGCTTTGCTACATCTACGTAA 59.875 40.000 0.00 0.00 39.88 3.18
182 183 5.805486 CAGAGCTTTGCTACATCTACGTAAA 59.195 40.000 0.00 0.00 39.88 2.01
183 184 6.310467 CAGAGCTTTGCTACATCTACGTAAAA 59.690 38.462 0.00 0.00 39.88 1.52
184 185 7.010552 CAGAGCTTTGCTACATCTACGTAAAAT 59.989 37.037 0.00 0.00 39.88 1.82
185 186 8.195436 AGAGCTTTGCTACATCTACGTAAAATA 58.805 33.333 0.00 0.00 39.88 1.40
186 187 8.354011 AGCTTTGCTACATCTACGTAAAATAG 57.646 34.615 0.00 0.00 36.99 1.73
187 188 7.042658 AGCTTTGCTACATCTACGTAAAATAGC 60.043 37.037 15.62 15.62 36.99 2.97
188 189 7.042658 GCTTTGCTACATCTACGTAAAATAGCT 60.043 37.037 19.92 0.00 35.64 3.32
189 190 9.459640 CTTTGCTACATCTACGTAAAATAGCTA 57.540 33.333 19.92 13.95 35.64 3.32
190 191 8.792831 TTGCTACATCTACGTAAAATAGCTAC 57.207 34.615 19.92 0.00 35.64 3.58
191 192 7.073883 TGCTACATCTACGTAAAATAGCTACG 58.926 38.462 19.92 4.47 45.93 3.51
192 193 7.041848 TGCTACATCTACGTAAAATAGCTACGA 60.042 37.037 19.92 3.76 43.80 3.43
193 194 7.800380 GCTACATCTACGTAAAATAGCTACGAA 59.200 37.037 12.64 0.00 43.80 3.85
194 195 9.655769 CTACATCTACGTAAAATAGCTACGAAA 57.344 33.333 12.64 0.33 43.80 3.46
195 196 8.915871 ACATCTACGTAAAATAGCTACGAAAA 57.084 30.769 12.64 0.00 43.80 2.29
196 197 9.017669 ACATCTACGTAAAATAGCTACGAAAAG 57.982 33.333 12.64 7.06 43.80 2.27
197 198 9.017669 CATCTACGTAAAATAGCTACGAAAAGT 57.982 33.333 12.64 4.76 43.80 2.66
198 199 8.970691 TCTACGTAAAATAGCTACGAAAAGTT 57.029 30.769 12.64 0.00 43.80 2.66
201 202 7.657364 ACGTAAAATAGCTACGAAAAGTTACG 58.343 34.615 12.64 16.08 43.80 3.18
202 203 7.326063 ACGTAAAATAGCTACGAAAAGTTACGT 59.674 33.333 12.64 16.58 45.50 3.57
203 204 8.785101 CGTAAAATAGCTACGAAAAGTTACGTA 58.215 33.333 0.00 12.37 43.80 3.57
206 207 6.780944 ATAGCTACGAAAAGTTACGTAACG 57.219 37.500 27.75 19.79 42.77 3.18
207 208 3.914364 AGCTACGAAAAGTTACGTAACGG 59.086 43.478 27.75 18.86 42.77 4.44
208 209 3.911964 GCTACGAAAAGTTACGTAACGGA 59.088 43.478 27.75 14.75 42.77 4.69
209 210 4.558860 GCTACGAAAAGTTACGTAACGGAT 59.441 41.667 27.75 19.08 42.77 4.18
210 211 5.060940 GCTACGAAAAGTTACGTAACGGATT 59.939 40.000 27.75 23.09 42.77 3.01
211 212 6.250527 GCTACGAAAAGTTACGTAACGGATTA 59.749 38.462 27.75 16.09 42.77 1.75
212 213 6.617289 ACGAAAAGTTACGTAACGGATTAG 57.383 37.500 27.75 23.54 40.92 1.73
213 214 6.149633 ACGAAAAGTTACGTAACGGATTAGT 58.850 36.000 27.75 24.03 40.92 2.24
214 215 6.640907 ACGAAAAGTTACGTAACGGATTAGTT 59.359 34.615 27.75 14.89 40.92 2.24
215 216 6.944400 CGAAAAGTTACGTAACGGATTAGTTG 59.056 38.462 27.75 13.02 40.96 3.16
216 217 6.710692 AAAGTTACGTAACGGATTAGTTGG 57.289 37.500 27.75 0.00 40.96 3.77
217 218 4.176271 AGTTACGTAACGGATTAGTTGGC 58.824 43.478 27.75 4.49 40.96 4.52
218 219 2.747396 ACGTAACGGATTAGTTGGCA 57.253 45.000 0.00 0.00 35.70 4.92
219 220 3.042871 ACGTAACGGATTAGTTGGCAA 57.957 42.857 0.00 0.00 35.70 4.52
220 221 3.401182 ACGTAACGGATTAGTTGGCAAA 58.599 40.909 0.00 0.00 35.70 3.68
221 222 3.814283 ACGTAACGGATTAGTTGGCAAAA 59.186 39.130 0.00 0.00 35.70 2.44
222 223 4.456566 ACGTAACGGATTAGTTGGCAAAAT 59.543 37.500 0.00 0.00 35.70 1.82
223 224 5.642919 ACGTAACGGATTAGTTGGCAAAATA 59.357 36.000 0.00 0.00 35.70 1.40
224 225 6.316890 ACGTAACGGATTAGTTGGCAAAATAT 59.683 34.615 0.00 0.00 35.70 1.28
225 226 6.631238 CGTAACGGATTAGTTGGCAAAATATG 59.369 38.462 0.00 0.00 35.70 1.78
226 227 6.767524 AACGGATTAGTTGGCAAAATATGA 57.232 33.333 0.00 0.00 32.39 2.15
227 228 6.959639 ACGGATTAGTTGGCAAAATATGAT 57.040 33.333 0.00 0.00 0.00 2.45
228 229 7.346751 ACGGATTAGTTGGCAAAATATGATT 57.653 32.000 0.00 0.00 0.00 2.57
229 230 8.458573 ACGGATTAGTTGGCAAAATATGATTA 57.541 30.769 0.00 0.00 0.00 1.75
230 231 8.567948 ACGGATTAGTTGGCAAAATATGATTAG 58.432 33.333 0.00 0.00 0.00 1.73
231 232 8.783093 CGGATTAGTTGGCAAAATATGATTAGA 58.217 33.333 0.00 0.00 0.00 2.10
234 235 6.966534 AGTTGGCAAAATATGATTAGAGGG 57.033 37.500 0.00 0.00 0.00 4.30
235 236 5.835280 AGTTGGCAAAATATGATTAGAGGGG 59.165 40.000 0.00 0.00 0.00 4.79
236 237 5.661503 TGGCAAAATATGATTAGAGGGGA 57.338 39.130 0.00 0.00 0.00 4.81
237 238 5.634118 TGGCAAAATATGATTAGAGGGGAG 58.366 41.667 0.00 0.00 0.00 4.30
238 239 5.012893 GGCAAAATATGATTAGAGGGGAGG 58.987 45.833 0.00 0.00 0.00 4.30
239 240 5.012893 GCAAAATATGATTAGAGGGGAGGG 58.987 45.833 0.00 0.00 0.00 4.30
240 241 5.222130 GCAAAATATGATTAGAGGGGAGGGA 60.222 44.000 0.00 0.00 0.00 4.20
241 242 6.479884 CAAAATATGATTAGAGGGGAGGGAG 58.520 44.000 0.00 0.00 0.00 4.30
242 243 2.731339 ATGATTAGAGGGGAGGGAGG 57.269 55.000 0.00 0.00 0.00 4.30
243 244 0.104934 TGATTAGAGGGGAGGGAGGC 60.105 60.000 0.00 0.00 0.00 4.70
244 245 0.838554 GATTAGAGGGGAGGGAGGCC 60.839 65.000 0.00 0.00 0.00 5.19
245 246 2.348172 ATTAGAGGGGAGGGAGGCCC 62.348 65.000 0.00 0.00 45.90 5.80
254 255 3.264845 GGGAGGCCCACCCTGAAA 61.265 66.667 23.66 0.00 46.60 2.69
255 256 2.851045 GGAGGCCCACCCTGAAAA 59.149 61.111 0.00 0.00 46.60 2.29
256 257 1.388133 GGAGGCCCACCCTGAAAAT 59.612 57.895 0.00 0.00 46.60 1.82
257 258 0.684479 GGAGGCCCACCCTGAAAATC 60.684 60.000 0.00 0.00 46.60 2.17
258 259 0.684479 GAGGCCCACCCTGAAAATCC 60.684 60.000 0.00 0.00 46.60 3.01
259 260 2.052104 GGCCCACCCTGAAAATCCG 61.052 63.158 0.00 0.00 0.00 4.18
260 261 2.710902 GCCCACCCTGAAAATCCGC 61.711 63.158 0.00 0.00 0.00 5.54
261 262 1.304052 CCCACCCTGAAAATCCGCA 60.304 57.895 0.00 0.00 0.00 5.69
262 263 1.315257 CCCACCCTGAAAATCCGCAG 61.315 60.000 0.00 0.00 0.00 5.18
289 290 2.969628 GGGGGAGAGAGAGATTGATGA 58.030 52.381 0.00 0.00 0.00 2.92
290 291 2.899256 GGGGGAGAGAGAGATTGATGAG 59.101 54.545 0.00 0.00 0.00 2.90
291 292 3.437784 GGGGGAGAGAGAGATTGATGAGA 60.438 52.174 0.00 0.00 0.00 3.27
292 293 3.828451 GGGGAGAGAGAGATTGATGAGAG 59.172 52.174 0.00 0.00 0.00 3.20
293 294 3.256631 GGGAGAGAGAGATTGATGAGAGC 59.743 52.174 0.00 0.00 0.00 4.09
294 295 3.890756 GGAGAGAGAGATTGATGAGAGCA 59.109 47.826 0.00 0.00 0.00 4.26
295 296 4.341806 GGAGAGAGAGATTGATGAGAGCAA 59.658 45.833 0.00 0.00 0.00 3.91
296 297 5.508489 GGAGAGAGAGATTGATGAGAGCAAG 60.508 48.000 0.00 0.00 0.00 4.01
297 298 4.053295 GAGAGAGATTGATGAGAGCAAGC 58.947 47.826 0.00 0.00 32.18 4.01
298 299 3.132925 GAGAGATTGATGAGAGCAAGCC 58.867 50.000 0.00 0.00 32.40 4.35
299 300 2.504585 AGAGATTGATGAGAGCAAGCCA 59.495 45.455 0.00 0.00 32.40 4.75
300 301 2.613133 GAGATTGATGAGAGCAAGCCAC 59.387 50.000 0.00 0.00 32.40 5.01
301 302 1.329906 GATTGATGAGAGCAAGCCACG 59.670 52.381 0.00 0.00 0.00 4.94
302 303 0.035317 TTGATGAGAGCAAGCCACGT 59.965 50.000 0.00 0.00 0.00 4.49
303 304 0.390340 TGATGAGAGCAAGCCACGTC 60.390 55.000 0.00 0.00 0.00 4.34
304 305 1.078848 ATGAGAGCAAGCCACGTCC 60.079 57.895 0.00 0.00 0.00 4.79
305 306 2.811317 GAGAGCAAGCCACGTCCG 60.811 66.667 0.00 0.00 0.00 4.79
317 318 2.126618 CGTCCGCACGTAAGCTGA 60.127 61.111 0.00 0.00 41.42 4.26
318 319 1.516386 CGTCCGCACGTAAGCTGAT 60.516 57.895 0.00 0.00 41.42 2.90
319 320 1.076533 CGTCCGCACGTAAGCTGATT 61.077 55.000 0.00 0.00 41.42 2.57
320 321 1.076332 GTCCGCACGTAAGCTGATTT 58.924 50.000 0.00 0.00 45.62 2.17
321 322 1.463444 GTCCGCACGTAAGCTGATTTT 59.537 47.619 0.00 0.00 45.62 1.82
322 323 1.730064 TCCGCACGTAAGCTGATTTTC 59.270 47.619 0.00 0.00 45.62 2.29
323 324 1.463056 CCGCACGTAAGCTGATTTTCA 59.537 47.619 0.00 0.00 45.62 2.69
324 325 2.095853 CCGCACGTAAGCTGATTTTCAT 59.904 45.455 0.00 0.00 45.62 2.57
325 326 3.308595 CCGCACGTAAGCTGATTTTCATA 59.691 43.478 0.00 0.00 45.62 2.15
326 327 4.263800 CGCACGTAAGCTGATTTTCATAC 58.736 43.478 0.00 0.00 45.62 2.39
327 328 4.263800 GCACGTAAGCTGATTTTCATACG 58.736 43.478 8.39 8.39 38.26 3.06
328 329 4.032445 GCACGTAAGCTGATTTTCATACGA 59.968 41.667 15.14 0.00 35.87 3.43
329 330 5.276868 GCACGTAAGCTGATTTTCATACGAT 60.277 40.000 15.14 0.31 35.87 3.73
330 331 6.705782 CACGTAAGCTGATTTTCATACGATT 58.294 36.000 15.14 0.00 35.87 3.34
331 332 6.841286 CACGTAAGCTGATTTTCATACGATTC 59.159 38.462 15.14 0.00 35.87 2.52
332 333 6.757010 ACGTAAGCTGATTTTCATACGATTCT 59.243 34.615 15.14 0.00 35.87 2.40
333 334 7.277981 ACGTAAGCTGATTTTCATACGATTCTT 59.722 33.333 15.14 0.00 35.87 2.52
334 335 8.116753 CGTAAGCTGATTTTCATACGATTCTTT 58.883 33.333 4.71 0.00 35.87 2.52
335 336 9.774742 GTAAGCTGATTTTCATACGATTCTTTT 57.225 29.630 0.00 0.00 0.00 2.27
336 337 8.679288 AAGCTGATTTTCATACGATTCTTTTG 57.321 30.769 0.00 0.00 0.00 2.44
337 338 7.820648 AGCTGATTTTCATACGATTCTTTTGT 58.179 30.769 0.00 0.00 0.00 2.83
338 339 8.946085 AGCTGATTTTCATACGATTCTTTTGTA 58.054 29.630 0.00 0.00 0.00 2.41
339 340 9.214953 GCTGATTTTCATACGATTCTTTTGTAG 57.785 33.333 0.00 0.00 0.00 2.74
340 341 9.708222 CTGATTTTCATACGATTCTTTTGTAGG 57.292 33.333 0.00 0.00 0.00 3.18
341 342 9.226606 TGATTTTCATACGATTCTTTTGTAGGT 57.773 29.630 0.00 0.00 29.76 3.08
376 377 6.986424 GAATTTTTCGTCCAACCAAACTAG 57.014 37.500 0.00 0.00 0.00 2.57
377 378 4.904253 TTTTTCGTCCAACCAAACTAGG 57.096 40.909 0.00 0.00 0.00 3.02
378 379 1.886886 TTCGTCCAACCAAACTAGGC 58.113 50.000 0.00 0.00 0.00 3.93
379 380 0.035739 TCGTCCAACCAAACTAGGCC 59.964 55.000 0.00 0.00 0.00 5.19
380 381 0.250553 CGTCCAACCAAACTAGGCCA 60.251 55.000 5.01 0.00 0.00 5.36
381 382 1.816183 CGTCCAACCAAACTAGGCCAA 60.816 52.381 5.01 0.00 0.00 4.52
382 383 2.312390 GTCCAACCAAACTAGGCCAAA 58.688 47.619 5.01 0.00 0.00 3.28
383 384 2.897326 GTCCAACCAAACTAGGCCAAAT 59.103 45.455 5.01 0.00 0.00 2.32
384 385 3.056821 GTCCAACCAAACTAGGCCAAATC 60.057 47.826 5.01 0.00 0.00 2.17
385 386 2.896685 CCAACCAAACTAGGCCAAATCA 59.103 45.455 5.01 0.00 0.00 2.57
386 387 3.056607 CCAACCAAACTAGGCCAAATCAG 60.057 47.826 5.01 0.00 0.00 2.90
387 388 2.171003 ACCAAACTAGGCCAAATCAGC 58.829 47.619 5.01 0.00 0.00 4.26
388 389 2.225117 ACCAAACTAGGCCAAATCAGCT 60.225 45.455 5.01 0.00 0.00 4.24
389 390 3.010138 ACCAAACTAGGCCAAATCAGCTA 59.990 43.478 5.01 0.00 0.00 3.32
390 391 3.629398 CCAAACTAGGCCAAATCAGCTAG 59.371 47.826 5.01 0.00 0.00 3.42
391 392 4.265073 CAAACTAGGCCAAATCAGCTAGT 58.735 43.478 5.01 0.00 0.00 2.57
392 393 5.428253 CAAACTAGGCCAAATCAGCTAGTA 58.572 41.667 5.01 0.00 0.00 1.82
393 394 4.674281 ACTAGGCCAAATCAGCTAGTAC 57.326 45.455 5.01 0.00 0.00 2.73
394 395 2.604046 AGGCCAAATCAGCTAGTACG 57.396 50.000 5.01 0.00 0.00 3.67
395 396 1.831736 AGGCCAAATCAGCTAGTACGT 59.168 47.619 5.01 0.00 0.00 3.57
396 397 3.028850 AGGCCAAATCAGCTAGTACGTA 58.971 45.455 5.01 0.00 0.00 3.57
397 398 3.449737 AGGCCAAATCAGCTAGTACGTAA 59.550 43.478 5.01 0.00 0.00 3.18
398 399 3.554731 GGCCAAATCAGCTAGTACGTAAC 59.445 47.826 0.00 0.00 0.00 2.50
399 400 4.430908 GCCAAATCAGCTAGTACGTAACT 58.569 43.478 0.00 0.00 42.62 2.24
400 401 4.868734 GCCAAATCAGCTAGTACGTAACTT 59.131 41.667 0.00 0.00 39.80 2.66
401 402 5.350640 GCCAAATCAGCTAGTACGTAACTTT 59.649 40.000 0.00 0.00 39.80 2.66
402 403 6.532657 GCCAAATCAGCTAGTACGTAACTTTA 59.467 38.462 0.00 0.00 39.80 1.85
403 404 7.463780 GCCAAATCAGCTAGTACGTAACTTTAC 60.464 40.741 0.00 0.00 39.80 2.01
404 405 7.543172 CCAAATCAGCTAGTACGTAACTTTACA 59.457 37.037 0.00 0.00 39.80 2.41
405 406 9.084164 CAAATCAGCTAGTACGTAACTTTACAT 57.916 33.333 0.00 0.00 39.80 2.29
407 408 9.947669 AATCAGCTAGTACGTAACTTTACATAG 57.052 33.333 0.00 0.00 39.80 2.23
408 409 7.923888 TCAGCTAGTACGTAACTTTACATAGG 58.076 38.462 0.00 0.00 39.80 2.57
409 410 6.636044 CAGCTAGTACGTAACTTTACATAGGC 59.364 42.308 0.00 0.00 39.80 3.93
410 411 6.319658 AGCTAGTACGTAACTTTACATAGGCA 59.680 38.462 0.00 0.00 39.80 4.75
411 412 6.974622 GCTAGTACGTAACTTTACATAGGCAA 59.025 38.462 0.00 0.00 39.80 4.52
412 413 7.489113 GCTAGTACGTAACTTTACATAGGCAAA 59.511 37.037 0.00 0.00 39.80 3.68
413 414 9.525409 CTAGTACGTAACTTTACATAGGCAAAT 57.475 33.333 0.00 0.00 39.80 2.32
414 415 8.782339 AGTACGTAACTTTACATAGGCAAATT 57.218 30.769 0.00 0.00 33.35 1.82
415 416 9.874205 AGTACGTAACTTTACATAGGCAAATTA 57.126 29.630 0.00 0.00 33.35 1.40
416 417 9.906111 GTACGTAACTTTACATAGGCAAATTAC 57.094 33.333 0.00 0.00 33.28 1.89
417 418 7.678226 ACGTAACTTTACATAGGCAAATTACG 58.322 34.615 16.87 16.87 44.70 3.18
418 419 7.331687 ACGTAACTTTACATAGGCAAATTACGT 59.668 33.333 17.62 17.62 46.19 3.57
419 420 8.806634 CGTAACTTTACATAGGCAAATTACGTA 58.193 33.333 13.54 0.00 38.21 3.57
421 422 7.781548 ACTTTACATAGGCAAATTACGTAGG 57.218 36.000 0.00 0.00 0.00 3.18
422 423 6.259387 ACTTTACATAGGCAAATTACGTAGGC 59.741 38.462 0.00 0.00 0.00 3.93
423 424 3.128349 ACATAGGCAAATTACGTAGGCG 58.872 45.455 0.00 0.00 44.93 5.52
441 442 3.002965 AGGCGTAGTTGCAGTTTTGTTAC 59.997 43.478 0.00 0.00 36.28 2.50
454 455 5.990996 CAGTTTTGTTACGGTAAGACCCTTA 59.009 40.000 0.00 0.00 33.75 2.69
455 456 6.652062 CAGTTTTGTTACGGTAAGACCCTTAT 59.348 38.462 0.00 0.00 33.75 1.73
456 457 7.818930 CAGTTTTGTTACGGTAAGACCCTTATA 59.181 37.037 0.00 0.00 33.75 0.98
457 458 8.374743 AGTTTTGTTACGGTAAGACCCTTATAA 58.625 33.333 0.00 0.00 33.75 0.98
458 459 8.998377 GTTTTGTTACGGTAAGACCCTTATAAA 58.002 33.333 0.00 0.00 33.75 1.40
459 460 8.546597 TTTGTTACGGTAAGACCCTTATAAAC 57.453 34.615 0.00 0.00 33.75 2.01
460 461 7.238486 TGTTACGGTAAGACCCTTATAAACA 57.762 36.000 0.00 0.00 33.75 2.83
461 462 7.096551 TGTTACGGTAAGACCCTTATAAACAC 58.903 38.462 0.00 0.00 33.75 3.32
462 463 7.039082 TGTTACGGTAAGACCCTTATAAACACT 60.039 37.037 0.00 0.00 33.75 3.55
463 464 5.727434 ACGGTAAGACCCTTATAAACACTG 58.273 41.667 0.00 0.00 33.75 3.66
464 465 5.114081 CGGTAAGACCCTTATAAACACTGG 58.886 45.833 0.00 0.00 33.75 4.00
465 466 4.880120 GGTAAGACCCTTATAAACACTGGC 59.120 45.833 0.00 0.00 30.04 4.85
466 467 3.261981 AGACCCTTATAAACACTGGCG 57.738 47.619 0.00 0.00 0.00 5.69
467 468 2.093128 AGACCCTTATAAACACTGGCGG 60.093 50.000 0.00 0.00 0.00 6.13
468 469 1.910671 ACCCTTATAAACACTGGCGGA 59.089 47.619 0.00 0.00 0.00 5.54
469 470 2.093128 ACCCTTATAAACACTGGCGGAG 60.093 50.000 0.00 0.00 0.00 4.63
482 483 4.180496 CGGAGCTACGTTTGGGTC 57.820 61.111 11.15 0.00 0.00 4.46
483 484 1.290955 CGGAGCTACGTTTGGGTCA 59.709 57.895 11.15 0.00 0.00 4.02
484 485 0.320073 CGGAGCTACGTTTGGGTCAA 60.320 55.000 11.15 0.00 0.00 3.18
485 486 1.874739 CGGAGCTACGTTTGGGTCAAA 60.875 52.381 11.15 0.00 0.00 2.69
486 487 1.534163 GGAGCTACGTTTGGGTCAAAC 59.466 52.381 12.05 12.05 46.88 2.93
511 512 2.994417 TGGCCCGCCCATGTTTTC 60.994 61.111 0.00 0.00 39.18 2.29
512 513 2.679996 GGCCCGCCCATGTTTTCT 60.680 61.111 0.00 0.00 0.00 2.52
513 514 2.573340 GCCCGCCCATGTTTTCTG 59.427 61.111 0.00 0.00 0.00 3.02
514 515 2.275380 GCCCGCCCATGTTTTCTGT 61.275 57.895 0.00 0.00 0.00 3.41
515 516 0.963355 GCCCGCCCATGTTTTCTGTA 60.963 55.000 0.00 0.00 0.00 2.74
516 517 1.540267 CCCGCCCATGTTTTCTGTAA 58.460 50.000 0.00 0.00 0.00 2.41
517 518 1.889829 CCCGCCCATGTTTTCTGTAAA 59.110 47.619 0.00 0.00 0.00 2.01
518 519 2.297597 CCCGCCCATGTTTTCTGTAAAA 59.702 45.455 0.00 0.00 32.15 1.52
519 520 3.243907 CCCGCCCATGTTTTCTGTAAAAA 60.244 43.478 0.00 0.00 36.37 1.94
520 521 4.562552 CCCGCCCATGTTTTCTGTAAAAAT 60.563 41.667 0.00 0.00 36.37 1.82
521 522 5.336849 CCCGCCCATGTTTTCTGTAAAAATA 60.337 40.000 0.00 0.00 36.37 1.40
522 523 5.575218 CCGCCCATGTTTTCTGTAAAAATAC 59.425 40.000 0.00 0.00 36.37 1.89
523 524 6.153067 CGCCCATGTTTTCTGTAAAAATACA 58.847 36.000 0.00 0.00 36.37 2.29
524 525 6.642950 CGCCCATGTTTTCTGTAAAAATACAA 59.357 34.615 0.00 0.00 36.37 2.41
525 526 7.148820 CGCCCATGTTTTCTGTAAAAATACAAG 60.149 37.037 0.00 0.00 36.37 3.16
526 527 7.655732 GCCCATGTTTTCTGTAAAAATACAAGT 59.344 33.333 0.00 0.00 36.37 3.16
527 528 9.191995 CCCATGTTTTCTGTAAAAATACAAGTC 57.808 33.333 0.00 0.00 36.37 3.01
528 529 9.965824 CCATGTTTTCTGTAAAAATACAAGTCT 57.034 29.630 0.00 0.00 36.37 3.24
539 540 9.486497 GTAAAAATACAAGTCTATAGGTAGGCC 57.514 37.037 0.00 0.00 32.85 5.19
540 541 6.683312 AAATACAAGTCTATAGGTAGGCCC 57.317 41.667 0.00 0.00 32.85 5.80
541 542 3.700863 ACAAGTCTATAGGTAGGCCCA 57.299 47.619 0.00 0.00 32.85 5.36
542 543 3.577919 ACAAGTCTATAGGTAGGCCCAG 58.422 50.000 0.00 0.00 32.85 4.45
543 544 2.300437 CAAGTCTATAGGTAGGCCCAGC 59.700 54.545 0.00 0.00 32.85 4.85
553 554 2.828549 GGCCCAGCCCACGTAATG 60.829 66.667 0.00 0.00 44.06 1.90
554 555 3.518068 GCCCAGCCCACGTAATGC 61.518 66.667 0.00 0.00 0.00 3.56
555 556 2.045438 CCCAGCCCACGTAATGCA 60.045 61.111 0.00 0.00 0.00 3.96
556 557 1.677300 CCCAGCCCACGTAATGCAA 60.677 57.895 0.00 0.00 0.00 4.08
557 558 1.506262 CCAGCCCACGTAATGCAAC 59.494 57.895 0.00 0.00 0.00 4.17
558 559 1.240641 CCAGCCCACGTAATGCAACA 61.241 55.000 0.00 0.00 0.00 3.33
559 560 0.109781 CAGCCCACGTAATGCAACAC 60.110 55.000 0.00 0.00 0.00 3.32
560 561 0.536233 AGCCCACGTAATGCAACACA 60.536 50.000 0.00 0.00 0.00 3.72
561 562 0.525761 GCCCACGTAATGCAACACAT 59.474 50.000 0.00 0.00 42.30 3.21
562 563 1.732077 GCCCACGTAATGCAACACATG 60.732 52.381 0.00 0.00 39.60 3.21
563 564 1.539388 CCCACGTAATGCAACACATGT 59.461 47.619 0.00 0.00 39.60 3.21
564 565 2.414029 CCCACGTAATGCAACACATGTC 60.414 50.000 0.00 0.00 39.60 3.06
565 566 2.414029 CCACGTAATGCAACACATGTCC 60.414 50.000 0.00 0.00 39.60 4.02
566 567 1.463056 ACGTAATGCAACACATGTCCG 59.537 47.619 0.00 0.00 39.60 4.79
567 568 1.463056 CGTAATGCAACACATGTCCGT 59.537 47.619 0.00 0.00 39.60 4.69
568 569 2.668945 CGTAATGCAACACATGTCCGTA 59.331 45.455 0.00 0.00 39.60 4.02
569 570 3.241963 CGTAATGCAACACATGTCCGTAG 60.242 47.826 0.00 0.00 39.60 3.51
570 571 1.086696 ATGCAACACATGTCCGTAGC 58.913 50.000 0.00 0.00 37.70 3.58
571 572 0.250081 TGCAACACATGTCCGTAGCA 60.250 50.000 0.00 0.00 0.00 3.49
572 573 0.165944 GCAACACATGTCCGTAGCAC 59.834 55.000 0.00 0.00 0.00 4.40
573 574 0.796312 CAACACATGTCCGTAGCACC 59.204 55.000 0.00 0.00 0.00 5.01
574 575 0.394938 AACACATGTCCGTAGCACCA 59.605 50.000 0.00 0.00 0.00 4.17
575 576 0.037326 ACACATGTCCGTAGCACCAG 60.037 55.000 0.00 0.00 0.00 4.00
576 577 1.079127 ACATGTCCGTAGCACCAGC 60.079 57.895 0.00 0.00 42.56 4.85
577 578 1.815421 CATGTCCGTAGCACCAGCC 60.815 63.158 0.00 0.00 43.56 4.85
578 579 3.031417 ATGTCCGTAGCACCAGCCC 62.031 63.158 0.00 0.00 43.56 5.19
579 580 3.702048 GTCCGTAGCACCAGCCCA 61.702 66.667 0.00 0.00 43.56 5.36
580 581 3.390521 TCCGTAGCACCAGCCCAG 61.391 66.667 0.00 0.00 43.56 4.45
582 583 4.087892 CGTAGCACCAGCCCAGCT 62.088 66.667 0.00 0.00 43.56 4.24
591 592 3.406200 AGCCCAGCTGTAGCCCAG 61.406 66.667 19.28 0.03 44.53 4.45
592 593 4.496336 GCCCAGCTGTAGCCCAGG 62.496 72.222 13.81 5.74 41.81 4.45
597 598 4.625800 GCTGTAGCCCAGGTTCAG 57.374 61.111 3.43 0.00 41.81 3.02
598 599 1.679898 GCTGTAGCCCAGGTTCAGT 59.320 57.895 3.43 0.00 41.81 3.41
599 600 0.391793 GCTGTAGCCCAGGTTCAGTC 60.392 60.000 3.43 0.00 41.81 3.51
600 601 1.270907 CTGTAGCCCAGGTTCAGTCT 58.729 55.000 0.00 0.00 37.54 3.24
601 602 0.976641 TGTAGCCCAGGTTCAGTCTG 59.023 55.000 0.00 0.00 0.00 3.51
605 606 2.352805 CCAGGTTCAGTCTGGCCC 59.647 66.667 0.00 0.35 44.29 5.80
606 607 2.046892 CAGGTTCAGTCTGGCCCG 60.047 66.667 0.00 0.00 0.00 6.13
607 608 4.021925 AGGTTCAGTCTGGCCCGC 62.022 66.667 0.00 0.00 0.00 6.13
612 613 3.479203 CAGTCTGGCCCGCCCATA 61.479 66.667 0.00 0.00 44.33 2.74
613 614 2.690881 AGTCTGGCCCGCCCATAA 60.691 61.111 0.00 0.00 44.33 1.90
614 615 2.078665 AGTCTGGCCCGCCCATAAT 61.079 57.895 0.00 0.00 44.33 1.28
615 616 1.152756 GTCTGGCCCGCCCATAATT 60.153 57.895 0.00 0.00 44.33 1.40
616 617 1.150536 TCTGGCCCGCCCATAATTC 59.849 57.895 0.00 0.00 44.33 2.17
617 618 1.151450 CTGGCCCGCCCATAATTCT 59.849 57.895 0.00 0.00 44.33 2.40
618 619 1.152777 TGGCCCGCCCATAATTCTG 60.153 57.895 0.00 0.00 39.18 3.02
619 620 2.564721 GGCCCGCCCATAATTCTGC 61.565 63.158 0.00 0.00 0.00 4.26
620 621 1.529244 GCCCGCCCATAATTCTGCT 60.529 57.895 0.00 0.00 0.00 4.24
621 622 1.109323 GCCCGCCCATAATTCTGCTT 61.109 55.000 0.00 0.00 0.00 3.91
622 623 0.670162 CCCGCCCATAATTCTGCTTG 59.330 55.000 0.00 0.00 0.00 4.01
623 624 1.392589 CCGCCCATAATTCTGCTTGT 58.607 50.000 0.00 0.00 0.00 3.16
624 625 2.571212 CCGCCCATAATTCTGCTTGTA 58.429 47.619 0.00 0.00 0.00 2.41
625 626 2.549754 CCGCCCATAATTCTGCTTGTAG 59.450 50.000 0.00 0.00 0.00 2.74
626 627 2.031682 CGCCCATAATTCTGCTTGTAGC 60.032 50.000 0.00 0.00 42.82 3.58
627 628 3.217626 GCCCATAATTCTGCTTGTAGCT 58.782 45.455 0.00 0.00 42.97 3.32
628 629 3.251972 GCCCATAATTCTGCTTGTAGCTC 59.748 47.826 0.00 0.00 42.97 4.09
629 630 3.817647 CCCATAATTCTGCTTGTAGCTCC 59.182 47.826 0.00 0.00 42.97 4.70
630 631 3.496130 CCATAATTCTGCTTGTAGCTCCG 59.504 47.826 0.00 0.00 42.97 4.63
631 632 1.373570 AATTCTGCTTGTAGCTCCGC 58.626 50.000 0.00 0.00 42.97 5.54
632 633 0.462759 ATTCTGCTTGTAGCTCCGCC 60.463 55.000 0.00 0.00 42.97 6.13
633 634 1.826340 TTCTGCTTGTAGCTCCGCCA 61.826 55.000 0.00 0.00 42.97 5.69
634 635 2.047274 TGCTTGTAGCTCCGCCAC 60.047 61.111 0.00 0.00 42.97 5.01
635 636 2.266055 GCTTGTAGCTCCGCCACT 59.734 61.111 0.00 0.00 38.45 4.00
636 637 2.103042 GCTTGTAGCTCCGCCACTG 61.103 63.158 0.00 0.00 38.45 3.66
637 638 2.047274 TTGTAGCTCCGCCACTGC 60.047 61.111 0.00 0.00 0.00 4.40
638 639 2.513026 CTTGTAGCTCCGCCACTGCT 62.513 60.000 0.00 0.00 40.43 4.24
639 640 2.111999 TTGTAGCTCCGCCACTGCTT 62.112 55.000 0.00 0.00 38.15 3.91
640 641 2.103042 GTAGCTCCGCCACTGCTTG 61.103 63.158 0.00 0.00 38.15 4.01
641 642 2.583441 TAGCTCCGCCACTGCTTGT 61.583 57.895 0.00 0.00 38.15 3.16
642 643 1.254975 TAGCTCCGCCACTGCTTGTA 61.255 55.000 0.00 0.00 38.15 2.41
643 644 1.671054 GCTCCGCCACTGCTTGTAA 60.671 57.895 0.00 0.00 34.43 2.41
696 939 3.181500 GGTACTTAATTTGGCCAGCGAAG 60.181 47.826 5.11 11.06 0.00 3.79
764 1437 2.447244 AGTCAAGAGCACAGTACAGC 57.553 50.000 0.00 0.00 0.00 4.40
782 1461 3.895656 ACAGCACAGTAGTACTTTCTCCA 59.104 43.478 0.00 0.00 0.00 3.86
808 1487 2.156098 GTCGTGAGGGCTAGATCCTAG 58.844 57.143 5.23 0.00 34.21 3.02
815 1496 0.115349 GGCTAGATCCTAGGCCCTCA 59.885 60.000 14.38 0.00 38.77 3.86
857 1538 2.263741 GCACAACCTCACCAGCCAG 61.264 63.158 0.00 0.00 0.00 4.85
889 1570 1.445754 CTCAGTCACTCCGCTGCTG 60.446 63.158 0.00 0.00 33.09 4.41
890 1571 3.117171 CAGTCACTCCGCTGCTGC 61.117 66.667 5.34 5.34 0.00 5.25
891 1572 3.619767 AGTCACTCCGCTGCTGCA 61.620 61.111 16.29 0.88 39.64 4.41
893 1574 2.125391 TCACTCCGCTGCTGCATC 60.125 61.111 16.29 0.00 39.64 3.91
896 1577 3.260483 CTCCGCTGCTGCATCGAC 61.260 66.667 25.34 4.91 39.64 4.20
897 1578 4.819761 TCCGCTGCTGCATCGACC 62.820 66.667 25.34 1.50 39.64 4.79
899 1580 3.857854 CGCTGCTGCATCGACCAC 61.858 66.667 19.96 0.00 39.64 4.16
900 1581 3.503363 GCTGCTGCATCGACCACC 61.503 66.667 11.11 0.00 39.41 4.61
901 1582 3.190849 CTGCTGCATCGACCACCG 61.191 66.667 1.31 0.00 40.25 4.94
926 1607 0.315625 CATGTCACATGCGATGCGAC 60.316 55.000 4.43 9.13 41.45 5.19
1175 1919 4.971125 GCCGCGGACTATGCCTCC 62.971 72.222 33.48 2.06 0.00 4.30
1201 1945 0.621609 CCGGGGTGATCAAGGGTTAA 59.378 55.000 0.00 0.00 0.00 2.01
1216 1970 6.487331 TCAAGGGTTAAATATGAACACGTTGT 59.513 34.615 15.07 0.00 35.27 3.32
1290 2044 0.325860 ACTACCTCCGCCCCAACATA 60.326 55.000 0.00 0.00 0.00 2.29
1630 2399 4.792804 GGCCAGCCCAGCAGTCTC 62.793 72.222 0.00 0.00 0.00 3.36
1680 2449 4.080299 GGGTTCTGGTCTCATATCCAAACT 60.080 45.833 0.00 0.00 33.06 2.66
1721 2490 1.812235 AACGTGCAAGATCATCAGCA 58.188 45.000 6.65 0.97 34.10 4.41
1959 2728 0.689623 CTGGTTCTTGGAGCTCCTGT 59.310 55.000 32.28 0.00 36.82 4.00
1962 2731 1.611936 GGTTCTTGGAGCTCCTGTTCC 60.612 57.143 32.28 22.20 42.93 3.62
1965 2734 4.648007 TGGAGCTCCTGTTCCACT 57.352 55.556 32.28 0.00 46.39 4.00
2024 2793 3.064931 GGCACGGGCAGTAGAATTATAC 58.935 50.000 13.89 1.87 43.71 1.47
2025 2794 3.493699 GGCACGGGCAGTAGAATTATACA 60.494 47.826 13.89 0.00 43.71 2.29
2030 2802 4.754618 CGGGCAGTAGAATTATACATGCAA 59.245 41.667 23.53 0.00 34.38 4.08
2068 2847 9.781633 ATATGATCCGTATACTATAGTCTGGTC 57.218 37.037 9.12 7.97 0.00 4.02
2069 2848 7.255199 TGATCCGTATACTATAGTCTGGTCT 57.745 40.000 9.12 0.57 0.00 3.85
2070 2849 8.371571 TGATCCGTATACTATAGTCTGGTCTA 57.628 38.462 9.12 0.00 0.00 2.59
2071 2850 8.990203 TGATCCGTATACTATAGTCTGGTCTAT 58.010 37.037 9.12 0.00 35.24 1.98
2074 2853 8.922237 TCCGTATACTATAGTCTGGTCTATAGG 58.078 40.741 9.12 5.64 46.71 2.57
2126 2906 4.587891 AGCTTCTCTTTTGAAGATCTGGG 58.412 43.478 0.00 0.00 44.40 4.45
2168 2948 8.273557 CGTAAATGCAGAACCAATATACAGTAC 58.726 37.037 0.00 0.00 0.00 2.73
2233 3013 7.229306 ACTCATGCTCACTTCATCAGTTTAAAA 59.771 33.333 0.00 0.00 30.92 1.52
2237 3017 6.265196 TGCTCACTTCATCAGTTTAAAACCAT 59.735 34.615 0.00 0.00 30.92 3.55
2243 3027 7.147567 ACTTCATCAGTTTAAAACCATGGGTTT 60.148 33.333 29.85 29.85 45.10 3.27
2260 3044 2.101415 GGTTTTCTGGTGAAGCTGCTTT 59.899 45.455 17.10 0.00 33.28 3.51
2261 3045 3.375642 GTTTTCTGGTGAAGCTGCTTTC 58.624 45.455 17.10 12.34 33.28 2.62
2277 3061 4.661222 TGCTTTCCCATTGAACATCAGTA 58.339 39.130 0.00 0.00 31.05 2.74
2287 3071 8.739039 CCCATTGAACATCAGTAAAGTTTCATA 58.261 33.333 0.00 0.00 0.00 2.15
2387 3277 9.223099 TCTAAGTATTGCATTCCATATGTGATG 57.777 33.333 1.24 6.58 0.00 3.07
2453 3359 9.599866 AATACAGATCAAATGTTCTTGTATCGA 57.400 29.630 0.00 0.00 32.02 3.59
2497 3403 9.686683 AGACCTAAACATAAATACAAATCAGCT 57.313 29.630 0.00 0.00 0.00 4.24
2525 3431 2.662791 CGAATAAAGAATCGCGGCCATG 60.663 50.000 6.13 0.00 31.71 3.66
2536 3442 2.030540 TCGCGGCCATGAGTAGTTATAC 60.031 50.000 6.13 0.00 0.00 1.47
2537 3443 2.287970 CGCGGCCATGAGTAGTTATACA 60.288 50.000 2.24 0.00 34.07 2.29
2558 3465 3.606777 CACTCACCGTGTAGTTCATTACG 59.393 47.826 0.00 0.00 38.84 3.18
2573 3480 0.103572 TTACGCGCTTATCTGTCCCC 59.896 55.000 5.73 0.00 0.00 4.81
2580 3487 1.884235 CTTATCTGTCCCCGGCATTC 58.116 55.000 0.00 0.00 0.00 2.67
2594 3501 0.251354 GCATTCTCAGCTCCCACAGA 59.749 55.000 0.00 0.00 0.00 3.41
2607 3514 3.038280 TCCCACAGAGAGACAAACAAGA 58.962 45.455 0.00 0.00 0.00 3.02
2678 3588 3.409026 ACAAACAAAGGTGGTTTTGCA 57.591 38.095 0.00 0.00 40.80 4.08
2870 3780 1.956636 GCCAGGATTGAACATGCTCCA 60.957 52.381 0.00 0.00 0.00 3.86
2915 3825 0.817634 TGTGCAACGTAAGGCTGCTT 60.818 50.000 10.27 0.00 46.64 3.91
2954 3864 0.104120 TGTCGGGGCATGACTTATCG 59.896 55.000 0.00 0.00 37.26 2.92
2963 3873 3.753272 GGCATGACTTATCGCCATACAAT 59.247 43.478 0.00 0.00 44.25 2.71
2985 3895 3.341823 TCTTTCTGAAGCTCAGCCATTC 58.658 45.455 0.00 0.00 43.95 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.937175 GGTCTAGCATTATTCAACTTATTCAAC 57.063 33.333 0.00 0.00 0.00 3.18
39 40 9.905713 AGGTCTAGCATTATTCAACTTATTCAA 57.094 29.630 0.00 0.00 0.00 2.69
42 43 9.477484 CGTAGGTCTAGCATTATTCAACTTATT 57.523 33.333 0.00 0.00 0.00 1.40
43 44 8.639761 ACGTAGGTCTAGCATTATTCAACTTAT 58.360 33.333 0.00 0.00 0.00 1.73
44 45 7.919091 CACGTAGGTCTAGCATTATTCAACTTA 59.081 37.037 0.00 0.00 0.00 2.24
45 46 6.757010 CACGTAGGTCTAGCATTATTCAACTT 59.243 38.462 0.00 0.00 0.00 2.66
46 47 6.273825 CACGTAGGTCTAGCATTATTCAACT 58.726 40.000 0.00 0.00 0.00 3.16
47 48 5.462398 CCACGTAGGTCTAGCATTATTCAAC 59.538 44.000 0.00 0.00 0.00 3.18
48 49 5.597806 CCACGTAGGTCTAGCATTATTCAA 58.402 41.667 0.00 0.00 0.00 2.69
49 50 5.196341 CCACGTAGGTCTAGCATTATTCA 57.804 43.478 0.00 0.00 0.00 2.57
65 66 5.858381 AGGATTACGTAGATAGACCACGTA 58.142 41.667 2.38 2.38 46.23 3.57
67 68 5.350914 CCTAGGATTACGTAGATAGACCACG 59.649 48.000 1.05 0.00 41.32 4.94
68 69 6.237154 ACCTAGGATTACGTAGATAGACCAC 58.763 44.000 17.98 0.00 36.84 4.16
69 70 6.445451 ACCTAGGATTACGTAGATAGACCA 57.555 41.667 17.98 0.00 36.84 4.02
70 71 8.891720 CATAACCTAGGATTACGTAGATAGACC 58.108 40.741 17.98 0.00 36.84 3.85
71 72 8.397148 GCATAACCTAGGATTACGTAGATAGAC 58.603 40.741 17.98 0.00 36.84 2.59
72 73 7.555554 GGCATAACCTAGGATTACGTAGATAGA 59.444 40.741 17.98 0.00 36.84 1.98
73 74 7.201803 GGGCATAACCTAGGATTACGTAGATAG 60.202 44.444 17.98 0.00 39.10 2.08
74 75 6.604795 GGGCATAACCTAGGATTACGTAGATA 59.395 42.308 17.98 0.00 39.10 1.98
75 76 5.421374 GGGCATAACCTAGGATTACGTAGAT 59.579 44.000 17.98 0.00 39.10 1.98
76 77 4.768968 GGGCATAACCTAGGATTACGTAGA 59.231 45.833 17.98 0.00 39.10 2.59
77 78 4.771054 AGGGCATAACCTAGGATTACGTAG 59.229 45.833 17.98 3.77 39.65 3.51
78 79 4.744237 AGGGCATAACCTAGGATTACGTA 58.256 43.478 17.98 0.00 39.65 3.57
79 80 3.584294 AGGGCATAACCTAGGATTACGT 58.416 45.455 17.98 0.00 39.65 3.57
80 81 4.618920 AAGGGCATAACCTAGGATTACG 57.381 45.455 17.98 4.40 40.87 3.18
81 82 6.189036 AGAAAGGGCATAACCTAGGATTAC 57.811 41.667 17.98 0.16 40.87 1.89
82 83 7.941053 TTAGAAAGGGCATAACCTAGGATTA 57.059 36.000 17.98 10.77 40.87 1.75
83 84 6.841781 TTAGAAAGGGCATAACCTAGGATT 57.158 37.500 17.98 8.76 40.87 3.01
84 85 6.390165 AGTTTAGAAAGGGCATAACCTAGGAT 59.610 38.462 17.98 6.20 40.87 3.24
85 86 5.729718 AGTTTAGAAAGGGCATAACCTAGGA 59.270 40.000 17.98 0.00 40.87 2.94
86 87 6.002653 AGTTTAGAAAGGGCATAACCTAGG 57.997 41.667 7.41 7.41 40.87 3.02
87 88 9.274206 GATTAGTTTAGAAAGGGCATAACCTAG 57.726 37.037 0.00 0.00 40.87 3.02
88 89 8.774183 TGATTAGTTTAGAAAGGGCATAACCTA 58.226 33.333 0.00 0.00 40.87 3.08
89 90 7.639378 TGATTAGTTTAGAAAGGGCATAACCT 58.361 34.615 0.00 0.00 44.56 3.50
90 91 7.773690 TCTGATTAGTTTAGAAAGGGCATAACC 59.226 37.037 0.00 0.00 37.93 2.85
91 92 8.613482 GTCTGATTAGTTTAGAAAGGGCATAAC 58.387 37.037 0.00 0.00 0.00 1.89
92 93 7.773690 GGTCTGATTAGTTTAGAAAGGGCATAA 59.226 37.037 0.00 0.00 0.00 1.90
93 94 7.280356 GGTCTGATTAGTTTAGAAAGGGCATA 58.720 38.462 0.00 0.00 0.00 3.14
94 95 6.122964 GGTCTGATTAGTTTAGAAAGGGCAT 58.877 40.000 0.00 0.00 0.00 4.40
95 96 5.497474 GGTCTGATTAGTTTAGAAAGGGCA 58.503 41.667 0.00 0.00 0.00 5.36
96 97 4.882427 GGGTCTGATTAGTTTAGAAAGGGC 59.118 45.833 0.00 0.00 0.00 5.19
97 98 5.437946 GGGGTCTGATTAGTTTAGAAAGGG 58.562 45.833 0.00 0.00 0.00 3.95
98 99 5.437946 GGGGGTCTGATTAGTTTAGAAAGG 58.562 45.833 0.00 0.00 0.00 3.11
122 123 1.402720 GCCCACACCGTGAAAATCATG 60.403 52.381 5.28 0.00 35.23 3.07
123 124 0.887933 GCCCACACCGTGAAAATCAT 59.112 50.000 5.28 0.00 35.23 2.45
124 125 1.175983 GGCCCACACCGTGAAAATCA 61.176 55.000 5.28 0.00 35.23 2.57
125 126 0.893727 AGGCCCACACCGTGAAAATC 60.894 55.000 5.28 0.00 35.23 2.17
126 127 1.152830 AGGCCCACACCGTGAAAAT 59.847 52.632 5.28 0.00 35.23 1.82
127 128 1.826054 CAGGCCCACACCGTGAAAA 60.826 57.895 5.28 0.00 35.23 2.29
128 129 2.203280 CAGGCCCACACCGTGAAA 60.203 61.111 5.28 0.00 35.23 2.69
129 130 4.263572 CCAGGCCCACACCGTGAA 62.264 66.667 5.28 0.00 35.23 3.18
141 142 2.428530 CTCTGAAAAATTAGGCCCAGGC 59.571 50.000 0.00 0.00 41.06 4.85
142 143 2.428530 GCTCTGAAAAATTAGGCCCAGG 59.571 50.000 0.00 0.00 0.00 4.45
143 144 3.359950 AGCTCTGAAAAATTAGGCCCAG 58.640 45.455 0.00 0.00 0.00 4.45
144 145 3.456380 AGCTCTGAAAAATTAGGCCCA 57.544 42.857 0.00 0.00 0.00 5.36
145 146 4.498241 CAAAGCTCTGAAAAATTAGGCCC 58.502 43.478 0.00 0.00 0.00 5.80
146 147 3.928992 GCAAAGCTCTGAAAAATTAGGCC 59.071 43.478 0.00 0.00 0.00 5.19
147 148 4.814147 AGCAAAGCTCTGAAAAATTAGGC 58.186 39.130 0.00 0.00 30.62 3.93
148 149 6.913170 TGTAGCAAAGCTCTGAAAAATTAGG 58.087 36.000 0.00 0.00 40.44 2.69
149 150 8.457261 AGATGTAGCAAAGCTCTGAAAAATTAG 58.543 33.333 0.00 0.00 40.44 1.73
150 151 8.340618 AGATGTAGCAAAGCTCTGAAAAATTA 57.659 30.769 0.00 0.00 40.44 1.40
151 152 7.224522 AGATGTAGCAAAGCTCTGAAAAATT 57.775 32.000 0.00 0.00 40.44 1.82
152 153 6.830873 AGATGTAGCAAAGCTCTGAAAAAT 57.169 33.333 0.00 0.00 40.44 1.82
153 154 6.128553 CGTAGATGTAGCAAAGCTCTGAAAAA 60.129 38.462 0.00 0.00 40.44 1.94
154 155 5.348724 CGTAGATGTAGCAAAGCTCTGAAAA 59.651 40.000 0.00 0.00 40.44 2.29
155 156 4.864806 CGTAGATGTAGCAAAGCTCTGAAA 59.135 41.667 0.00 0.00 40.44 2.69
156 157 4.082190 ACGTAGATGTAGCAAAGCTCTGAA 60.082 41.667 0.00 0.00 40.44 3.02
157 158 3.444034 ACGTAGATGTAGCAAAGCTCTGA 59.556 43.478 0.00 0.00 40.44 3.27
158 159 3.775202 ACGTAGATGTAGCAAAGCTCTG 58.225 45.455 0.00 0.00 40.44 3.35
159 160 5.578005 TTACGTAGATGTAGCAAAGCTCT 57.422 39.130 0.00 0.00 40.44 4.09
160 161 6.642683 TTTTACGTAGATGTAGCAAAGCTC 57.357 37.500 0.00 0.00 40.44 4.09
161 162 7.042658 GCTATTTTACGTAGATGTAGCAAAGCT 60.043 37.037 18.26 0.00 43.41 3.74
162 163 7.042658 AGCTATTTTACGTAGATGTAGCAAAGC 60.043 37.037 22.04 13.24 36.45 3.51
163 164 8.354011 AGCTATTTTACGTAGATGTAGCAAAG 57.646 34.615 22.04 6.90 36.45 2.77
164 165 9.241317 GTAGCTATTTTACGTAGATGTAGCAAA 57.759 33.333 22.04 9.39 36.45 3.68
165 166 7.588854 CGTAGCTATTTTACGTAGATGTAGCAA 59.411 37.037 22.04 2.16 39.13 3.91
166 167 7.041848 TCGTAGCTATTTTACGTAGATGTAGCA 60.042 37.037 22.04 12.15 43.17 3.49
167 168 7.293745 TCGTAGCTATTTTACGTAGATGTAGC 58.706 38.462 16.67 16.67 43.17 3.58
168 169 9.655769 TTTCGTAGCTATTTTACGTAGATGTAG 57.344 33.333 5.92 0.00 43.17 2.74
170 171 8.915871 TTTTCGTAGCTATTTTACGTAGATGT 57.084 30.769 5.92 0.00 43.17 3.06
171 172 9.017669 ACTTTTCGTAGCTATTTTACGTAGATG 57.982 33.333 5.92 0.35 43.17 2.90
172 173 9.578439 AACTTTTCGTAGCTATTTTACGTAGAT 57.422 29.630 5.92 0.00 43.17 1.98
173 174 8.970691 AACTTTTCGTAGCTATTTTACGTAGA 57.029 30.769 5.92 0.00 43.17 2.59
175 176 8.785101 CGTAACTTTTCGTAGCTATTTTACGTA 58.215 33.333 5.92 0.00 43.17 3.57
176 177 7.326063 ACGTAACTTTTCGTAGCTATTTTACGT 59.674 33.333 18.16 18.16 44.43 3.57
177 178 7.657364 ACGTAACTTTTCGTAGCTATTTTACG 58.343 34.615 17.38 17.38 43.82 3.18
180 181 8.155923 CGTTACGTAACTTTTCGTAGCTATTTT 58.844 33.333 30.01 0.00 42.09 1.82
181 182 7.201350 CCGTTACGTAACTTTTCGTAGCTATTT 60.201 37.037 30.01 0.00 42.09 1.40
182 183 6.251376 CCGTTACGTAACTTTTCGTAGCTATT 59.749 38.462 30.01 0.00 42.09 1.73
183 184 5.739161 CCGTTACGTAACTTTTCGTAGCTAT 59.261 40.000 30.01 0.00 42.09 2.97
184 185 5.086058 CCGTTACGTAACTTTTCGTAGCTA 58.914 41.667 30.01 0.00 42.09 3.32
185 186 3.914364 CCGTTACGTAACTTTTCGTAGCT 59.086 43.478 30.01 0.00 42.09 3.32
186 187 3.911964 TCCGTTACGTAACTTTTCGTAGC 59.088 43.478 30.01 6.11 42.09 3.58
187 188 6.617289 AATCCGTTACGTAACTTTTCGTAG 57.383 37.500 30.01 15.30 42.09 3.51
188 189 7.302524 ACTAATCCGTTACGTAACTTTTCGTA 58.697 34.615 30.01 15.96 40.70 3.43
189 190 6.149633 ACTAATCCGTTACGTAACTTTTCGT 58.850 36.000 30.01 19.86 42.82 3.85
190 191 6.617289 ACTAATCCGTTACGTAACTTTTCG 57.383 37.500 30.01 19.17 34.12 3.46
191 192 7.229530 CCAACTAATCCGTTACGTAACTTTTC 58.770 38.462 30.01 9.42 34.12 2.29
192 193 6.347644 GCCAACTAATCCGTTACGTAACTTTT 60.348 38.462 30.01 22.39 34.12 2.27
193 194 5.120674 GCCAACTAATCCGTTACGTAACTTT 59.879 40.000 30.01 22.67 34.12 2.66
194 195 4.627035 GCCAACTAATCCGTTACGTAACTT 59.373 41.667 30.01 21.56 34.12 2.66
195 196 4.176271 GCCAACTAATCCGTTACGTAACT 58.824 43.478 30.01 17.32 34.12 2.24
196 197 3.925913 TGCCAACTAATCCGTTACGTAAC 59.074 43.478 25.27 25.27 0.00 2.50
197 198 4.185467 TGCCAACTAATCCGTTACGTAA 57.815 40.909 3.29 3.29 0.00 3.18
198 199 3.865011 TGCCAACTAATCCGTTACGTA 57.135 42.857 3.52 0.00 0.00 3.57
199 200 2.747396 TGCCAACTAATCCGTTACGT 57.253 45.000 3.52 0.00 0.00 3.57
200 201 4.407496 TTTTGCCAACTAATCCGTTACG 57.593 40.909 0.00 0.00 0.00 3.18
201 202 7.699566 TCATATTTTGCCAACTAATCCGTTAC 58.300 34.615 0.00 0.00 0.00 2.50
202 203 7.867305 TCATATTTTGCCAACTAATCCGTTA 57.133 32.000 0.00 0.00 0.00 3.18
203 204 6.767524 TCATATTTTGCCAACTAATCCGTT 57.232 33.333 0.00 0.00 0.00 4.44
204 205 6.959639 ATCATATTTTGCCAACTAATCCGT 57.040 33.333 0.00 0.00 0.00 4.69
205 206 8.783093 TCTAATCATATTTTGCCAACTAATCCG 58.217 33.333 0.00 0.00 0.00 4.18
208 209 9.082313 CCCTCTAATCATATTTTGCCAACTAAT 57.918 33.333 0.00 0.00 0.00 1.73
209 210 7.505585 CCCCTCTAATCATATTTTGCCAACTAA 59.494 37.037 0.00 0.00 0.00 2.24
210 211 7.004086 CCCCTCTAATCATATTTTGCCAACTA 58.996 38.462 0.00 0.00 0.00 2.24
211 212 5.835280 CCCCTCTAATCATATTTTGCCAACT 59.165 40.000 0.00 0.00 0.00 3.16
212 213 5.833131 TCCCCTCTAATCATATTTTGCCAAC 59.167 40.000 0.00 0.00 0.00 3.77
213 214 6.024563 TCCCCTCTAATCATATTTTGCCAA 57.975 37.500 0.00 0.00 0.00 4.52
214 215 5.458069 CCTCCCCTCTAATCATATTTTGCCA 60.458 44.000 0.00 0.00 0.00 4.92
215 216 5.012893 CCTCCCCTCTAATCATATTTTGCC 58.987 45.833 0.00 0.00 0.00 4.52
216 217 5.012893 CCCTCCCCTCTAATCATATTTTGC 58.987 45.833 0.00 0.00 0.00 3.68
217 218 6.454223 TCCCTCCCCTCTAATCATATTTTG 57.546 41.667 0.00 0.00 0.00 2.44
218 219 5.553557 CCTCCCTCCCCTCTAATCATATTTT 59.446 44.000 0.00 0.00 0.00 1.82
219 220 5.104409 CCTCCCTCCCCTCTAATCATATTT 58.896 45.833 0.00 0.00 0.00 1.40
220 221 4.704403 CCTCCCTCCCCTCTAATCATATT 58.296 47.826 0.00 0.00 0.00 1.28
221 222 3.569903 GCCTCCCTCCCCTCTAATCATAT 60.570 52.174 0.00 0.00 0.00 1.78
222 223 2.225650 GCCTCCCTCCCCTCTAATCATA 60.226 54.545 0.00 0.00 0.00 2.15
223 224 1.485978 GCCTCCCTCCCCTCTAATCAT 60.486 57.143 0.00 0.00 0.00 2.45
224 225 0.104934 GCCTCCCTCCCCTCTAATCA 60.105 60.000 0.00 0.00 0.00 2.57
225 226 0.838554 GGCCTCCCTCCCCTCTAATC 60.839 65.000 0.00 0.00 0.00 1.75
226 227 1.240428 GGCCTCCCTCCCCTCTAAT 59.760 63.158 0.00 0.00 0.00 1.73
227 228 2.703430 GGCCTCCCTCCCCTCTAA 59.297 66.667 0.00 0.00 0.00 2.10
228 229 3.449126 GGGCCTCCCTCCCCTCTA 61.449 72.222 0.84 0.00 41.34 2.43
237 238 2.168272 ATTTTCAGGGTGGGCCTCCC 62.168 60.000 32.18 32.18 45.71 4.30
238 239 0.684479 GATTTTCAGGGTGGGCCTCC 60.684 60.000 16.42 16.42 34.45 4.30
239 240 0.684479 GGATTTTCAGGGTGGGCCTC 60.684 60.000 4.53 0.00 34.45 4.70
240 241 1.388133 GGATTTTCAGGGTGGGCCT 59.612 57.895 4.53 0.00 34.45 5.19
241 242 2.052104 CGGATTTTCAGGGTGGGCC 61.052 63.158 0.00 0.00 0.00 5.80
242 243 2.710902 GCGGATTTTCAGGGTGGGC 61.711 63.158 0.00 0.00 0.00 5.36
243 244 1.304052 TGCGGATTTTCAGGGTGGG 60.304 57.895 0.00 0.00 0.00 4.61
244 245 1.315257 CCTGCGGATTTTCAGGGTGG 61.315 60.000 0.00 0.00 44.64 4.61
245 246 2.183409 CCTGCGGATTTTCAGGGTG 58.817 57.895 0.00 0.00 44.64 4.61
246 247 4.743018 CCTGCGGATTTTCAGGGT 57.257 55.556 0.00 0.00 44.64 4.34
249 250 0.749454 CCTCCCCTGCGGATTTTCAG 60.749 60.000 0.00 0.00 41.00 3.02
250 251 1.302949 CCTCCCCTGCGGATTTTCA 59.697 57.895 0.00 0.00 41.00 2.69
251 252 1.453928 CCCTCCCCTGCGGATTTTC 60.454 63.158 0.00 0.00 41.00 2.29
252 253 2.683475 CCCTCCCCTGCGGATTTT 59.317 61.111 0.00 0.00 41.00 1.82
253 254 3.420482 CCCCTCCCCTGCGGATTT 61.420 66.667 0.00 0.00 41.00 2.17
269 270 2.899256 CTCATCAATCTCTCTCTCCCCC 59.101 54.545 0.00 0.00 0.00 5.40
270 271 3.828451 CTCTCATCAATCTCTCTCTCCCC 59.172 52.174 0.00 0.00 0.00 4.81
271 272 3.256631 GCTCTCATCAATCTCTCTCTCCC 59.743 52.174 0.00 0.00 0.00 4.30
272 273 3.890756 TGCTCTCATCAATCTCTCTCTCC 59.109 47.826 0.00 0.00 0.00 3.71
273 274 5.518848 TTGCTCTCATCAATCTCTCTCTC 57.481 43.478 0.00 0.00 0.00 3.20
274 275 4.202182 GCTTGCTCTCATCAATCTCTCTCT 60.202 45.833 0.00 0.00 0.00 3.10
275 276 4.053295 GCTTGCTCTCATCAATCTCTCTC 58.947 47.826 0.00 0.00 0.00 3.20
276 277 3.181463 GGCTTGCTCTCATCAATCTCTCT 60.181 47.826 0.00 0.00 0.00 3.10
277 278 3.132925 GGCTTGCTCTCATCAATCTCTC 58.867 50.000 0.00 0.00 0.00 3.20
278 279 2.504585 TGGCTTGCTCTCATCAATCTCT 59.495 45.455 0.00 0.00 0.00 3.10
279 280 2.613133 GTGGCTTGCTCTCATCAATCTC 59.387 50.000 0.00 0.00 0.00 2.75
280 281 2.641305 GTGGCTTGCTCTCATCAATCT 58.359 47.619 0.00 0.00 0.00 2.40
281 282 1.329906 CGTGGCTTGCTCTCATCAATC 59.670 52.381 0.00 0.00 0.00 2.67
282 283 1.339438 ACGTGGCTTGCTCTCATCAAT 60.339 47.619 0.00 0.00 0.00 2.57
283 284 0.035317 ACGTGGCTTGCTCTCATCAA 59.965 50.000 0.00 0.00 0.00 2.57
284 285 0.390340 GACGTGGCTTGCTCTCATCA 60.390 55.000 0.00 0.00 0.00 3.07
285 286 1.086634 GGACGTGGCTTGCTCTCATC 61.087 60.000 0.00 0.00 0.00 2.92
286 287 1.078848 GGACGTGGCTTGCTCTCAT 60.079 57.895 0.00 0.00 0.00 2.90
287 288 2.343758 GGACGTGGCTTGCTCTCA 59.656 61.111 0.00 0.00 0.00 3.27
288 289 2.811317 CGGACGTGGCTTGCTCTC 60.811 66.667 0.00 0.00 0.00 3.20
301 302 1.076332 AAATCAGCTTACGTGCGGAC 58.924 50.000 0.00 0.00 39.67 4.79
302 303 1.730064 GAAAATCAGCTTACGTGCGGA 59.270 47.619 0.00 0.00 40.94 5.54
303 304 1.463056 TGAAAATCAGCTTACGTGCGG 59.537 47.619 0.00 0.00 38.13 5.69
304 305 2.873170 TGAAAATCAGCTTACGTGCG 57.127 45.000 0.00 0.00 38.13 5.34
305 306 4.032445 TCGTATGAAAATCAGCTTACGTGC 59.968 41.667 0.00 0.00 38.49 5.34
306 307 5.696260 TCGTATGAAAATCAGCTTACGTG 57.304 39.130 0.00 0.00 38.49 4.49
307 308 6.757010 AGAATCGTATGAAAATCAGCTTACGT 59.243 34.615 9.43 0.00 38.49 3.57
308 309 7.166628 AGAATCGTATGAAAATCAGCTTACG 57.833 36.000 4.38 4.38 38.62 3.18
309 310 9.774742 AAAAGAATCGTATGAAAATCAGCTTAC 57.225 29.630 0.00 0.00 0.00 2.34
310 311 9.773328 CAAAAGAATCGTATGAAAATCAGCTTA 57.227 29.630 0.00 0.00 0.00 3.09
311 312 8.299570 ACAAAAGAATCGTATGAAAATCAGCTT 58.700 29.630 0.00 0.00 0.00 3.74
312 313 7.820648 ACAAAAGAATCGTATGAAAATCAGCT 58.179 30.769 0.00 0.00 0.00 4.24
313 314 9.214953 CTACAAAAGAATCGTATGAAAATCAGC 57.785 33.333 0.00 0.00 0.00 4.26
314 315 9.708222 CCTACAAAAGAATCGTATGAAAATCAG 57.292 33.333 0.00 0.00 0.00 2.90
315 316 9.226606 ACCTACAAAAGAATCGTATGAAAATCA 57.773 29.630 0.00 0.00 0.00 2.57
353 354 5.918576 CCTAGTTTGGTTGGACGAAAAATTC 59.081 40.000 0.00 0.00 27.90 2.17
354 355 5.737922 GCCTAGTTTGGTTGGACGAAAAATT 60.738 40.000 0.00 0.00 27.90 1.82
355 356 4.261867 GCCTAGTTTGGTTGGACGAAAAAT 60.262 41.667 0.00 0.00 27.90 1.82
356 357 3.067040 GCCTAGTTTGGTTGGACGAAAAA 59.933 43.478 0.00 0.00 27.90 1.94
357 358 2.619646 GCCTAGTTTGGTTGGACGAAAA 59.380 45.455 0.00 0.00 27.90 2.29
358 359 2.223745 GCCTAGTTTGGTTGGACGAAA 58.776 47.619 0.00 0.00 0.00 3.46
359 360 1.543871 GGCCTAGTTTGGTTGGACGAA 60.544 52.381 0.00 0.00 0.00 3.85
360 361 0.035739 GGCCTAGTTTGGTTGGACGA 59.964 55.000 0.00 0.00 0.00 4.20
361 362 0.250553 TGGCCTAGTTTGGTTGGACG 60.251 55.000 3.32 0.00 0.00 4.79
362 363 1.989706 TTGGCCTAGTTTGGTTGGAC 58.010 50.000 3.32 0.00 0.00 4.02
363 364 2.757894 TTTGGCCTAGTTTGGTTGGA 57.242 45.000 3.32 0.00 0.00 3.53
364 365 2.896685 TGATTTGGCCTAGTTTGGTTGG 59.103 45.455 3.32 0.00 0.00 3.77
365 366 3.614870 GCTGATTTGGCCTAGTTTGGTTG 60.615 47.826 3.32 0.00 0.00 3.77
366 367 2.562738 GCTGATTTGGCCTAGTTTGGTT 59.437 45.455 3.32 0.00 0.00 3.67
367 368 2.171003 GCTGATTTGGCCTAGTTTGGT 58.829 47.619 3.32 0.00 0.00 3.67
368 369 2.450476 AGCTGATTTGGCCTAGTTTGG 58.550 47.619 3.32 0.00 0.00 3.28
369 370 4.265073 ACTAGCTGATTTGGCCTAGTTTG 58.735 43.478 3.32 0.00 0.00 2.93
370 371 4.576330 ACTAGCTGATTTGGCCTAGTTT 57.424 40.909 3.32 0.00 0.00 2.66
371 372 4.441634 CGTACTAGCTGATTTGGCCTAGTT 60.442 45.833 3.32 0.00 31.53 2.24
372 373 3.068307 CGTACTAGCTGATTTGGCCTAGT 59.932 47.826 3.32 3.09 32.71 2.57
373 374 3.068307 ACGTACTAGCTGATTTGGCCTAG 59.932 47.826 3.32 0.00 0.00 3.02
374 375 3.028850 ACGTACTAGCTGATTTGGCCTA 58.971 45.455 3.32 0.00 0.00 3.93
375 376 1.831736 ACGTACTAGCTGATTTGGCCT 59.168 47.619 3.32 0.00 0.00 5.19
376 377 2.311124 ACGTACTAGCTGATTTGGCC 57.689 50.000 0.00 0.00 0.00 5.36
377 378 4.430908 AGTTACGTACTAGCTGATTTGGC 58.569 43.478 0.00 0.00 34.56 4.52
378 379 6.963049 AAAGTTACGTACTAGCTGATTTGG 57.037 37.500 0.00 0.00 35.54 3.28
379 380 8.456904 TGTAAAGTTACGTACTAGCTGATTTG 57.543 34.615 0.00 0.00 35.54 2.32
381 382 9.947669 CTATGTAAAGTTACGTACTAGCTGATT 57.052 33.333 0.00 0.00 35.54 2.57
382 383 8.566260 CCTATGTAAAGTTACGTACTAGCTGAT 58.434 37.037 0.00 0.00 35.54 2.90
383 384 7.467811 GCCTATGTAAAGTTACGTACTAGCTGA 60.468 40.741 0.00 0.00 35.54 4.26
384 385 6.636044 GCCTATGTAAAGTTACGTACTAGCTG 59.364 42.308 0.00 0.00 35.54 4.24
385 386 6.319658 TGCCTATGTAAAGTTACGTACTAGCT 59.680 38.462 0.00 0.00 35.54 3.32
386 387 6.498304 TGCCTATGTAAAGTTACGTACTAGC 58.502 40.000 0.00 4.59 35.54 3.42
387 388 8.915871 TTTGCCTATGTAAAGTTACGTACTAG 57.084 34.615 0.00 0.00 35.54 2.57
388 389 9.874205 AATTTGCCTATGTAAAGTTACGTACTA 57.126 29.630 0.00 0.00 35.54 1.82
389 390 8.782339 AATTTGCCTATGTAAAGTTACGTACT 57.218 30.769 0.00 0.00 39.32 2.73
390 391 9.906111 GTAATTTGCCTATGTAAAGTTACGTAC 57.094 33.333 0.00 0.00 36.45 3.67
391 392 8.806634 CGTAATTTGCCTATGTAAAGTTACGTA 58.193 33.333 16.92 0.00 37.87 3.57
392 393 7.331687 ACGTAATTTGCCTATGTAAAGTTACGT 59.668 33.333 20.57 20.57 42.55 3.57
393 394 7.678226 ACGTAATTTGCCTATGTAAAGTTACG 58.322 34.615 19.87 19.87 41.69 3.18
395 396 9.316730 CCTACGTAATTTGCCTATGTAAAGTTA 57.683 33.333 0.00 0.00 29.35 2.24
396 397 7.201670 GCCTACGTAATTTGCCTATGTAAAGTT 60.202 37.037 0.00 0.00 29.35 2.66
397 398 6.259387 GCCTACGTAATTTGCCTATGTAAAGT 59.741 38.462 0.00 0.00 29.35 2.66
398 399 6.563381 CGCCTACGTAATTTGCCTATGTAAAG 60.563 42.308 0.00 0.00 29.69 1.85
399 400 5.234757 CGCCTACGTAATTTGCCTATGTAAA 59.765 40.000 0.00 0.00 33.53 2.01
400 401 4.746115 CGCCTACGTAATTTGCCTATGTAA 59.254 41.667 0.00 0.00 33.53 2.41
401 402 4.300803 CGCCTACGTAATTTGCCTATGTA 58.699 43.478 0.00 0.00 33.53 2.29
402 403 3.128349 CGCCTACGTAATTTGCCTATGT 58.872 45.455 0.00 0.00 33.53 2.29
403 404 3.788434 CGCCTACGTAATTTGCCTATG 57.212 47.619 0.00 0.00 33.53 2.23
417 418 2.546789 ACAAAACTGCAACTACGCCTAC 59.453 45.455 0.00 0.00 0.00 3.18
418 419 2.841215 ACAAAACTGCAACTACGCCTA 58.159 42.857 0.00 0.00 0.00 3.93
419 420 1.675552 ACAAAACTGCAACTACGCCT 58.324 45.000 0.00 0.00 0.00 5.52
420 421 2.485266 AACAAAACTGCAACTACGCC 57.515 45.000 0.00 0.00 0.00 5.68
421 422 2.962191 CGTAACAAAACTGCAACTACGC 59.038 45.455 0.00 0.00 0.00 4.42
422 423 3.001533 ACCGTAACAAAACTGCAACTACG 59.998 43.478 0.00 0.00 0.00 3.51
423 424 4.541085 ACCGTAACAAAACTGCAACTAC 57.459 40.909 0.00 0.00 0.00 2.73
424 425 6.018832 GTCTTACCGTAACAAAACTGCAACTA 60.019 38.462 0.00 0.00 0.00 2.24
425 426 4.877251 TCTTACCGTAACAAAACTGCAACT 59.123 37.500 0.00 0.00 0.00 3.16
441 442 5.114081 CCAGTGTTTATAAGGGTCTTACCG 58.886 45.833 0.00 0.00 39.83 4.02
454 455 1.470979 CGTAGCTCCGCCAGTGTTTAT 60.471 52.381 0.00 0.00 0.00 1.40
455 456 0.108992 CGTAGCTCCGCCAGTGTTTA 60.109 55.000 0.00 0.00 0.00 2.01
456 457 1.374252 CGTAGCTCCGCCAGTGTTT 60.374 57.895 0.00 0.00 0.00 2.83
457 458 2.095978 AACGTAGCTCCGCCAGTGTT 62.096 55.000 0.00 0.00 0.00 3.32
458 459 2.095978 AAACGTAGCTCCGCCAGTGT 62.096 55.000 0.00 0.00 0.00 3.55
459 460 1.374252 AAACGTAGCTCCGCCAGTG 60.374 57.895 0.00 0.00 0.00 3.66
460 461 1.374252 CAAACGTAGCTCCGCCAGT 60.374 57.895 0.00 0.00 0.00 4.00
461 462 2.100631 CCAAACGTAGCTCCGCCAG 61.101 63.158 0.00 0.00 0.00 4.85
462 463 2.047655 CCAAACGTAGCTCCGCCA 60.048 61.111 0.00 0.00 0.00 5.69
463 464 2.818274 CCCAAACGTAGCTCCGCC 60.818 66.667 0.00 0.00 0.00 6.13
464 465 2.047560 ACCCAAACGTAGCTCCGC 60.048 61.111 0.00 0.00 0.00 5.54
465 466 0.320073 TTGACCCAAACGTAGCTCCG 60.320 55.000 0.00 0.00 0.00 4.63
466 467 1.534163 GTTTGACCCAAACGTAGCTCC 59.466 52.381 6.79 0.00 42.97 4.70
467 468 2.963498 GTTTGACCCAAACGTAGCTC 57.037 50.000 6.79 0.00 42.97 4.09
480 481 2.258726 GGCCACGGTCTGGTTTGAC 61.259 63.158 0.00 0.00 42.99 3.18
481 482 2.112297 GGCCACGGTCTGGTTTGA 59.888 61.111 0.00 0.00 42.99 2.69
482 483 2.983592 GGGCCACGGTCTGGTTTG 60.984 66.667 4.39 0.00 42.99 2.93
483 484 4.636435 CGGGCCACGGTCTGGTTT 62.636 66.667 4.39 0.00 42.99 3.27
493 494 3.295304 GAAAACATGGGCGGGCCAC 62.295 63.158 26.87 8.21 37.98 5.01
494 495 2.994417 GAAAACATGGGCGGGCCA 60.994 61.111 26.51 26.51 37.98 5.36
495 496 2.679996 AGAAAACATGGGCGGGCC 60.680 61.111 14.65 14.65 0.00 5.80
496 497 0.963355 TACAGAAAACATGGGCGGGC 60.963 55.000 0.00 0.00 0.00 6.13
497 498 1.540267 TTACAGAAAACATGGGCGGG 58.460 50.000 0.00 0.00 0.00 6.13
498 499 3.651803 TTTTACAGAAAACATGGGCGG 57.348 42.857 0.00 0.00 29.38 6.13
499 500 6.153067 TGTATTTTTACAGAAAACATGGGCG 58.847 36.000 0.00 0.00 34.24 6.13
500 501 7.655732 ACTTGTATTTTTACAGAAAACATGGGC 59.344 33.333 0.00 0.00 34.24 5.36
501 502 9.191995 GACTTGTATTTTTACAGAAAACATGGG 57.808 33.333 0.00 0.00 34.24 4.00
502 503 9.965824 AGACTTGTATTTTTACAGAAAACATGG 57.034 29.630 0.00 0.00 34.24 3.66
513 514 9.486497 GGCCTACCTATAGACTTGTATTTTTAC 57.514 37.037 0.00 0.00 0.00 2.01
514 515 8.654094 GGGCCTACCTATAGACTTGTATTTTTA 58.346 37.037 0.84 0.00 35.85 1.52
515 516 7.128263 TGGGCCTACCTATAGACTTGTATTTTT 59.872 37.037 4.53 0.00 41.11 1.94
516 517 6.618196 TGGGCCTACCTATAGACTTGTATTTT 59.382 38.462 4.53 0.00 41.11 1.82
517 518 6.148186 TGGGCCTACCTATAGACTTGTATTT 58.852 40.000 4.53 0.00 41.11 1.40
518 519 5.723355 TGGGCCTACCTATAGACTTGTATT 58.277 41.667 4.53 0.00 41.11 1.89
519 520 5.334421 CTGGGCCTACCTATAGACTTGTAT 58.666 45.833 4.53 0.00 41.11 2.29
520 521 4.737578 CTGGGCCTACCTATAGACTTGTA 58.262 47.826 4.53 0.00 41.11 2.41
521 522 3.577919 CTGGGCCTACCTATAGACTTGT 58.422 50.000 4.53 0.00 41.11 3.16
522 523 2.300437 GCTGGGCCTACCTATAGACTTG 59.700 54.545 4.53 0.00 41.11 3.16
523 524 2.610873 GCTGGGCCTACCTATAGACTT 58.389 52.381 4.53 0.00 41.11 3.01
524 525 1.203199 GGCTGGGCCTACCTATAGACT 60.203 57.143 4.53 0.00 46.69 3.24
525 526 1.268066 GGCTGGGCCTACCTATAGAC 58.732 60.000 4.53 0.00 46.69 2.59
526 527 3.788563 GGCTGGGCCTACCTATAGA 57.211 57.895 4.53 0.00 46.69 1.98
537 538 3.518068 GCATTACGTGGGCTGGGC 61.518 66.667 0.00 0.00 0.00 5.36
538 539 1.677300 TTGCATTACGTGGGCTGGG 60.677 57.895 0.00 0.00 0.00 4.45
539 540 1.240641 TGTTGCATTACGTGGGCTGG 61.241 55.000 0.00 0.00 0.00 4.85
540 541 0.109781 GTGTTGCATTACGTGGGCTG 60.110 55.000 0.00 0.00 0.00 4.85
541 542 0.536233 TGTGTTGCATTACGTGGGCT 60.536 50.000 0.00 0.00 0.00 5.19
542 543 0.525761 ATGTGTTGCATTACGTGGGC 59.474 50.000 0.00 0.00 33.14 5.36
543 544 1.539388 ACATGTGTTGCATTACGTGGG 59.461 47.619 20.53 4.35 37.96 4.61
544 545 2.414029 GGACATGTGTTGCATTACGTGG 60.414 50.000 20.53 8.47 37.96 4.94
545 546 2.724533 CGGACATGTGTTGCATTACGTG 60.725 50.000 1.15 16.94 39.20 4.49
546 547 1.463056 CGGACATGTGTTGCATTACGT 59.537 47.619 1.15 0.00 35.19 3.57
547 548 1.463056 ACGGACATGTGTTGCATTACG 59.537 47.619 1.15 0.00 35.19 3.18
548 549 3.485216 GCTACGGACATGTGTTGCATTAC 60.485 47.826 1.15 0.00 36.93 1.89
549 550 2.675844 GCTACGGACATGTGTTGCATTA 59.324 45.455 1.15 0.00 36.93 1.90
550 551 1.468520 GCTACGGACATGTGTTGCATT 59.531 47.619 1.15 0.00 36.93 3.56
551 552 1.086696 GCTACGGACATGTGTTGCAT 58.913 50.000 1.15 0.00 36.93 3.96
552 553 0.250081 TGCTACGGACATGTGTTGCA 60.250 50.000 17.24 17.24 42.82 4.08
553 554 0.165944 GTGCTACGGACATGTGTTGC 59.834 55.000 1.15 9.43 37.36 4.17
554 555 0.796312 GGTGCTACGGACATGTGTTG 59.204 55.000 1.15 0.00 0.00 3.33
555 556 0.394938 TGGTGCTACGGACATGTGTT 59.605 50.000 1.15 0.00 0.00 3.32
556 557 0.037326 CTGGTGCTACGGACATGTGT 60.037 55.000 1.15 0.00 0.00 3.72
557 558 1.361668 GCTGGTGCTACGGACATGTG 61.362 60.000 1.15 0.00 36.03 3.21
558 559 1.079127 GCTGGTGCTACGGACATGT 60.079 57.895 0.00 0.00 36.03 3.21
559 560 1.815421 GGCTGGTGCTACGGACATG 60.815 63.158 0.00 0.00 39.59 3.21
560 561 2.584608 GGCTGGTGCTACGGACAT 59.415 61.111 0.00 0.00 39.59 3.06
561 562 3.702048 GGGCTGGTGCTACGGACA 61.702 66.667 0.00 0.00 39.59 4.02
562 563 3.665675 CTGGGCTGGTGCTACGGAC 62.666 68.421 0.00 0.00 39.59 4.79
563 564 3.390521 CTGGGCTGGTGCTACGGA 61.391 66.667 0.00 0.00 39.59 4.69
565 566 4.087892 AGCTGGGCTGGTGCTACG 62.088 66.667 0.00 0.00 37.57 3.51
574 575 3.406200 CTGGGCTACAGCTGGGCT 61.406 66.667 25.39 7.15 40.97 5.19
575 576 4.496336 CCTGGGCTACAGCTGGGC 62.496 72.222 19.93 20.43 46.14 5.36
576 577 2.543067 GAACCTGGGCTACAGCTGGG 62.543 65.000 19.93 10.03 46.14 4.45
577 578 1.078143 GAACCTGGGCTACAGCTGG 60.078 63.158 19.93 1.57 46.14 4.85
578 579 0.392193 CTGAACCTGGGCTACAGCTG 60.392 60.000 13.48 13.48 46.14 4.24
579 580 0.838122 ACTGAACCTGGGCTACAGCT 60.838 55.000 0.00 0.00 46.14 4.24
580 581 0.391793 GACTGAACCTGGGCTACAGC 60.392 60.000 0.00 0.00 46.14 4.40
581 582 4.313142 CCAGACTGAACCTGGGCTACAG 62.313 59.091 3.32 4.57 45.66 2.74
582 583 0.976641 CAGACTGAACCTGGGCTACA 59.023 55.000 0.00 0.00 0.00 2.74
583 584 0.250513 CCAGACTGAACCTGGGCTAC 59.749 60.000 3.32 0.00 45.66 3.58
584 585 2.683916 CCAGACTGAACCTGGGCTA 58.316 57.895 3.32 0.00 45.66 3.93
585 586 3.488423 CCAGACTGAACCTGGGCT 58.512 61.111 3.32 0.00 45.66 5.19
589 590 2.046892 CGGGCCAGACTGAACCTG 60.047 66.667 4.39 6.48 0.00 4.00
590 591 4.021925 GCGGGCCAGACTGAACCT 62.022 66.667 7.23 0.00 0.00 3.50
594 595 3.993865 TATGGGCGGGCCAGACTGA 62.994 63.158 27.89 8.43 37.98 3.41
595 596 2.343475 ATTATGGGCGGGCCAGACTG 62.343 60.000 27.89 0.00 37.98 3.51
596 597 1.645402 AATTATGGGCGGGCCAGACT 61.645 55.000 27.89 15.64 37.98 3.24
597 598 1.152756 AATTATGGGCGGGCCAGAC 60.153 57.895 27.89 2.41 37.98 3.51
598 599 1.150536 GAATTATGGGCGGGCCAGA 59.849 57.895 27.89 21.71 37.98 3.86
599 600 1.151450 AGAATTATGGGCGGGCCAG 59.849 57.895 27.89 0.00 37.98 4.85
600 601 1.152777 CAGAATTATGGGCGGGCCA 60.153 57.895 26.51 26.51 37.98 5.36
601 602 2.564721 GCAGAATTATGGGCGGGCC 61.565 63.158 14.65 14.65 0.00 5.80
602 603 1.109323 AAGCAGAATTATGGGCGGGC 61.109 55.000 1.67 0.00 0.00 6.13
603 604 0.670162 CAAGCAGAATTATGGGCGGG 59.330 55.000 1.67 0.00 0.00 6.13
604 605 1.392589 ACAAGCAGAATTATGGGCGG 58.607 50.000 1.67 0.00 0.00 6.13
605 606 2.031682 GCTACAAGCAGAATTATGGGCG 60.032 50.000 1.67 0.00 41.89 6.13
606 607 3.217626 AGCTACAAGCAGAATTATGGGC 58.782 45.455 1.67 0.00 45.56 5.36
607 608 3.817647 GGAGCTACAAGCAGAATTATGGG 59.182 47.826 1.67 0.00 45.56 4.00
608 609 3.496130 CGGAGCTACAAGCAGAATTATGG 59.504 47.826 1.67 0.00 45.56 2.74
609 610 4.722203 CGGAGCTACAAGCAGAATTATG 57.278 45.455 0.00 0.00 45.56 1.90
630 631 5.629079 AGTCTTTTATTACAAGCAGTGGC 57.371 39.130 0.00 0.00 41.61 5.01
631 632 8.547967 TTCTAGTCTTTTATTACAAGCAGTGG 57.452 34.615 0.00 0.00 0.00 4.00
634 635 9.827411 GGTTTTCTAGTCTTTTATTACAAGCAG 57.173 33.333 0.00 0.00 0.00 4.24
635 636 9.344772 TGGTTTTCTAGTCTTTTATTACAAGCA 57.655 29.630 0.00 0.00 0.00 3.91
636 637 9.608617 GTGGTTTTCTAGTCTTTTATTACAAGC 57.391 33.333 0.00 0.00 0.00 4.01
702 945 5.311265 TCTCAGTCTCATGTGCTTCATTTT 58.689 37.500 0.00 0.00 34.09 1.82
704 947 4.505808 CTCTCAGTCTCATGTGCTTCATT 58.494 43.478 0.00 0.00 34.09 2.57
705 948 3.118702 CCTCTCAGTCTCATGTGCTTCAT 60.119 47.826 0.00 0.00 37.22 2.57
764 1437 3.576982 TGGGTGGAGAAAGTACTACTGTG 59.423 47.826 0.00 0.00 0.00 3.66
808 1487 2.239400 GGGCATTTTATAGTGAGGGCC 58.761 52.381 0.00 0.00 39.40 5.80
815 1496 2.224209 CGAGGACCGGGCATTTTATAGT 60.224 50.000 11.00 0.00 33.91 2.12
988 1669 0.108898 CTGCCCATCTCGATCGATCC 60.109 60.000 19.78 3.63 0.00 3.36
1201 1945 3.057596 CCCAGCAACAACGTGTTCATATT 60.058 43.478 0.00 0.00 38.77 1.28
1537 2306 1.817099 GCACGCTTAGCTGCATCCT 60.817 57.895 18.60 0.00 34.58 3.24
1565 2334 1.006571 GTGTCTTGAAGGCCGACGA 60.007 57.895 0.00 0.00 0.00 4.20
1575 2344 4.974438 AGCCCCGGGGTGTCTTGA 62.974 66.667 39.80 0.00 37.65 3.02
1630 2399 1.732917 CAGCGGCAGGAGAGAGTAG 59.267 63.158 1.45 0.00 0.00 2.57
1680 2449 2.195683 CGGCCCGGGTAGGTACTA 59.804 66.667 24.63 0.00 41.75 1.82
1699 2468 3.371898 TGCTGATGATCTTGCACGTTAAG 59.628 43.478 8.98 3.48 0.00 1.85
1759 2528 3.717294 GGTGGGGCTCGTGGACAT 61.717 66.667 0.00 0.00 0.00 3.06
1830 2599 2.723116 TCGCCGTCGAAAGTCACA 59.277 55.556 0.00 0.00 42.44 3.58
1965 2734 0.188587 ACACTGAGTCCACTCCTGGA 59.811 55.000 4.25 0.00 45.11 3.86
2111 2891 7.555554 ACTCATATCAACCCAGATCTTCAAAAG 59.444 37.037 0.00 0.00 0.00 2.27
2126 2906 8.072238 TGCATTTACGATACACTCATATCAAC 57.928 34.615 0.00 0.00 31.98 3.18
2168 2948 6.127814 GGCAATCAACTGATATCCCATATGTG 60.128 42.308 1.24 0.00 33.73 3.21
2237 3017 1.691196 CAGCTTCACCAGAAAACCCA 58.309 50.000 0.00 0.00 32.35 4.51
2243 3027 1.609208 GGAAAGCAGCTTCACCAGAA 58.391 50.000 20.10 0.00 0.00 3.02
2245 3029 0.538057 TGGGAAAGCAGCTTCACCAG 60.538 55.000 21.15 0.00 0.00 4.00
2249 3033 2.291209 TCAATGGGAAAGCAGCTTCA 57.709 45.000 8.48 2.48 0.00 3.02
2250 3034 2.297033 TGTTCAATGGGAAAGCAGCTTC 59.703 45.455 8.48 2.10 37.23 3.86
2260 3044 6.775142 TGAAACTTTACTGATGTTCAATGGGA 59.225 34.615 0.00 0.00 0.00 4.37
2261 3045 6.980593 TGAAACTTTACTGATGTTCAATGGG 58.019 36.000 0.00 0.00 0.00 4.00
2298 3082 6.090493 GCTGTTTAGCTGTTAACTACCAGTAC 59.910 42.308 7.22 0.00 46.57 2.73
2299 3083 6.161381 GCTGTTTAGCTGTTAACTACCAGTA 58.839 40.000 7.22 0.00 46.57 2.74
2301 3085 5.532025 GCTGTTTAGCTGTTAACTACCAG 57.468 43.478 7.22 4.79 46.57 4.00
2387 3277 4.515191 TGCTGTTTTCCAGATCTGTTACAC 59.485 41.667 21.11 12.44 44.49 2.90
2482 3388 7.428282 TCGTTTGTCAGCTGATTTGTATTTA 57.572 32.000 21.47 0.00 0.00 1.40
2495 3401 4.492294 GCGATTCTTTATTCGTTTGTCAGC 59.508 41.667 0.00 0.00 37.66 4.26
2497 3403 4.434989 CCGCGATTCTTTATTCGTTTGTCA 60.435 41.667 8.23 0.00 37.66 3.58
2537 3443 3.829948 CGTAATGAACTACACGGTGAGT 58.170 45.455 16.29 10.83 0.00 3.41
2558 3465 2.280186 CCGGGGACAGATAAGCGC 60.280 66.667 0.00 0.00 0.00 5.92
2573 3480 1.817099 GTGGGAGCTGAGAATGCCG 60.817 63.158 0.00 0.00 0.00 5.69
2580 3487 0.817013 GTCTCTCTGTGGGAGCTGAG 59.183 60.000 0.00 0.00 41.60 3.35
2594 3501 5.674525 TGATTGAGTGTCTTGTTTGTCTCT 58.325 37.500 0.00 0.00 0.00 3.10
2607 3514 0.257039 GAGGGGGCATGATTGAGTGT 59.743 55.000 0.00 0.00 0.00 3.55
2698 3608 2.124942 GAAGCCCGCCAGAAGGAG 60.125 66.667 0.00 0.00 36.89 3.69
2774 3684 3.198068 CGCCATTTGCTCTAAGCTCTTA 58.802 45.455 0.11 0.00 42.97 2.10
2870 3780 1.004044 CAGGGGTTGTTCAGCATCTCT 59.996 52.381 0.00 0.00 0.00 3.10
2915 3825 4.792068 ACAAAGATGACTCCCAAACTTCA 58.208 39.130 0.00 0.00 0.00 3.02
2954 3864 5.124457 TGAGCTTCAGAAAGAATTGTATGGC 59.876 40.000 0.00 0.00 35.25 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.