Multiple sequence alignment - TraesCS5B01G215100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G215100 chr5B 100.000 3341 0 0 1 3341 387905837 387902497 0.000000e+00 6170.0
1 TraesCS5B01G215100 chr5B 90.023 431 39 1 1341 1767 387953001 387952571 3.770000e-154 555.0
2 TraesCS5B01G215100 chr5B 79.528 508 72 21 2747 3239 648178995 648178505 1.920000e-87 333.0
3 TraesCS5B01G215100 chr5B 84.483 290 39 6 443 728 545196296 545196583 7.060000e-72 281.0
4 TraesCS5B01G215100 chr5B 83.258 221 24 8 3022 3230 113458111 113458330 1.220000e-44 191.0
5 TraesCS5B01G215100 chr5B 96.078 102 4 0 3237 3338 427235270 427235371 2.060000e-37 167.0
6 TraesCS5B01G215100 chr5B 95.238 105 5 0 3237 3341 691012641 691012745 2.060000e-37 167.0
7 TraesCS5B01G215100 chr5B 95.146 103 5 0 3237 3339 697612698 697612596 2.670000e-36 163.0
8 TraesCS5B01G215100 chr5B 91.589 107 8 1 1775 1880 387952438 387952332 2.690000e-31 147.0
9 TraesCS5B01G215100 chr5D 95.288 764 34 2 766 1529 332223483 332222722 0.000000e+00 1210.0
10 TraesCS5B01G215100 chr5D 81.468 1117 134 27 814 1897 332226034 332224958 0.000000e+00 848.0
11 TraesCS5B01G215100 chr5D 92.295 610 22 13 1 610 332216846 332216262 0.000000e+00 843.0
12 TraesCS5B01G215100 chr5D 96.561 378 3 1 2094 2461 332216226 332215849 4.740000e-173 617.0
13 TraesCS5B01G215100 chr5D 93.396 318 14 3 1494 1811 332222721 332222411 6.530000e-127 464.0
14 TraesCS5B01G215100 chr5D 95.817 263 7 2 2495 2753 332214841 332214579 3.990000e-114 422.0
15 TraesCS5B01G215100 chr5D 89.552 201 9 8 1802 1994 332221999 332221803 9.260000e-61 244.0
16 TraesCS5B01G215100 chr5D 92.045 88 1 2 2017 2098 362406755 362406668 5.860000e-23 119.0
17 TraesCS5B01G215100 chr5D 90.909 88 2 1 2017 2098 379844008 379843921 2.720000e-21 113.0
18 TraesCS5B01G215100 chr5D 90.805 87 5 2 2018 2101 462894953 462894867 2.720000e-21 113.0
19 TraesCS5B01G215100 chr5D 94.444 54 3 0 2459 2512 332214906 332214853 2.140000e-12 84.2
20 TraesCS5B01G215100 chr5D 97.500 40 1 0 2289 2328 332225077 332225038 5.980000e-08 69.4
21 TraesCS5B01G215100 chr5D 100.000 35 0 0 2289 2323 332222445 332222411 7.740000e-07 65.8
22 TraesCS5B01G215100 chr7B 85.164 519 49 17 2750 3242 687588629 687588113 1.070000e-139 507.0
23 TraesCS5B01G215100 chr7B 79.084 502 74 20 2750 3230 164918314 164918805 1.930000e-82 316.0
24 TraesCS5B01G215100 chr7B 84.099 283 37 7 443 721 555514087 555513809 1.980000e-67 267.0
25 TraesCS5B01G215100 chr6B 82.022 534 58 14 2750 3247 716068069 716068600 1.430000e-113 420.0
26 TraesCS5B01G215100 chr6B 94.286 105 6 0 3237 3341 700537577 700537681 9.590000e-36 161.0
27 TraesCS5B01G215100 chr6B 88.182 110 7 4 2104 2208 657260081 657259973 3.500000e-25 126.0
28 TraesCS5B01G215100 chr6B 92.857 84 6 0 2014 2097 717078847 717078930 4.530000e-24 122.0
29 TraesCS5B01G215100 chr6B 85.455 110 10 4 2104 2208 657156265 657156157 3.520000e-20 110.0
30 TraesCS5B01G215100 chr6B 89.394 66 5 2 2104 2168 657195668 657195604 7.680000e-12 82.4
31 TraesCS5B01G215100 chr3B 81.818 517 61 19 2750 3239 666190918 666190408 1.440000e-108 403.0
32 TraesCS5B01G215100 chr3B 84.224 393 48 10 2750 3139 725857235 725857616 1.460000e-98 370.0
33 TraesCS5B01G215100 chr3B 84.342 281 35 9 454 729 442334221 442334497 1.980000e-67 267.0
34 TraesCS5B01G215100 chr3B 79.946 369 45 17 2810 3172 803630381 803630726 9.260000e-61 244.0
35 TraesCS5B01G215100 chr3B 96.117 103 4 0 3239 3341 578588406 578588304 5.730000e-38 169.0
36 TraesCS5B01G215100 chr3B 94.286 105 6 0 3237 3341 219427138 219427034 9.590000e-36 161.0
37 TraesCS5B01G215100 chrUn 82.107 503 48 20 2750 3218 15415534 15415040 3.120000e-105 392.0
38 TraesCS5B01G215100 chrUn 89.888 89 2 3 2017 2098 19938004 19937916 1.270000e-19 108.0
39 TraesCS5B01G215100 chrUn 89.888 89 2 1 2017 2098 110488150 110488238 1.270000e-19 108.0
40 TraesCS5B01G215100 chrUn 90.244 82 3 1 2017 2098 40002887 40002963 5.900000e-18 102.0
41 TraesCS5B01G215100 chrUn 90.244 82 3 2 2017 2098 49819594 49819518 5.900000e-18 102.0
42 TraesCS5B01G215100 chrUn 90.244 82 3 1 2017 2098 97268352 97268276 5.900000e-18 102.0
43 TraesCS5B01G215100 chrUn 90.244 82 3 1 2017 2098 292553173 292553249 5.900000e-18 102.0
44 TraesCS5B01G215100 chrUn 90.244 82 3 1 2017 2098 363118372 363118448 5.900000e-18 102.0
45 TraesCS5B01G215100 chrUn 90.244 82 3 1 2017 2098 409445676 409445600 5.900000e-18 102.0
46 TraesCS5B01G215100 chrUn 90.000 80 3 1 2017 2096 34391494 34391568 7.630000e-17 99.0
47 TraesCS5B01G215100 chr2B 81.227 538 56 21 2750 3246 404544751 404544218 3.120000e-105 392.0
48 TraesCS5B01G215100 chr2B 83.756 394 55 5 2752 3143 26947050 26947436 6.810000e-97 364.0
49 TraesCS5B01G215100 chr2B 81.797 423 45 13 2750 3143 44349877 44349458 3.210000e-85 326.0
50 TraesCS5B01G215100 chr2B 89.000 100 8 3 2017 2115 744121606 744121703 1.630000e-23 121.0
51 TraesCS5B01G215100 chr1B 80.843 522 65 20 2750 3247 643264284 643263774 8.750000e-101 377.0
52 TraesCS5B01G215100 chr1B 79.493 473 69 11 282 728 181896784 181896314 9.000000e-81 311.0
53 TraesCS5B01G215100 chr1B 95.146 103 5 0 3239 3341 31481284 31481182 2.670000e-36 163.0
54 TraesCS5B01G215100 chr1B 91.743 109 7 1 599 707 681993480 681993374 2.080000e-32 150.0
55 TraesCS5B01G215100 chr1B 90.217 92 5 2 2009 2096 95298212 95298303 2.110000e-22 117.0
56 TraesCS5B01G215100 chr6D 81.513 476 59 9 282 729 281851208 281851682 6.810000e-97 364.0
57 TraesCS5B01G215100 chr6D 92.045 88 0 1 2017 2097 140998116 140998203 2.110000e-22 117.0
58 TraesCS5B01G215100 chr6D 92.771 83 3 2 2018 2097 430139666 430139584 2.110000e-22 117.0
59 TraesCS5B01G215100 chr6D 92.593 81 4 2 2018 2096 10066022 10066102 7.570000e-22 115.0
60 TraesCS5B01G215100 chr6D 91.566 83 4 1 2017 2096 430139584 430139666 9.800000e-21 111.0
61 TraesCS5B01G215100 chr6D 91.463 82 2 1 2017 2098 457792164 457792088 1.270000e-19 108.0
62 TraesCS5B01G215100 chr6D 90.361 83 5 2 2017 2096 192368103 192368185 4.560000e-19 106.0
63 TraesCS5B01G215100 chr6D 90.361 83 4 2 2018 2096 293153845 293153927 4.560000e-19 106.0
64 TraesCS5B01G215100 chr7D 79.452 511 67 27 2750 3230 496316375 496316877 8.940000e-86 327.0
65 TraesCS5B01G215100 chr7D 93.827 81 3 1 2018 2096 45272419 45272339 1.630000e-23 121.0
66 TraesCS5B01G215100 chr7D 89.796 98 4 4 2004 2096 563337090 563336994 1.630000e-23 121.0
67 TraesCS5B01G215100 chr4B 79.492 512 60 29 2745 3230 15186717 15187209 4.160000e-84 322.0
68 TraesCS5B01G215100 chr4B 93.902 82 5 0 2017 2098 230578037 230577956 1.260000e-24 124.0
69 TraesCS5B01G215100 chr4B 93.902 82 5 0 2017 2098 230577957 230578038 1.260000e-24 124.0
70 TraesCS5B01G215100 chr1D 79.110 517 67 24 2750 3239 455550066 455549564 5.380000e-83 318.0
71 TraesCS5B01G215100 chr1D 85.944 249 28 4 484 728 451056917 451056672 3.310000e-65 259.0
72 TraesCS5B01G215100 chr1D 91.608 143 10 2 587 728 451060612 451060753 2.630000e-46 196.0
73 TraesCS5B01G215100 chr1D 90.826 109 7 2 599 707 489728749 489728644 3.470000e-30 143.0
74 TraesCS5B01G215100 chr1D 97.561 82 2 0 2017 2098 418174401 418174320 1.250000e-29 141.0
75 TraesCS5B01G215100 chr1D 90.625 96 4 5 2016 2108 86902137 86902044 4.530000e-24 122.0
76 TraesCS5B01G215100 chr1D 93.827 81 3 2 2018 2096 351919202 351919282 1.630000e-23 121.0
77 TraesCS5B01G215100 chr1D 91.667 84 5 2 2017 2098 229465367 229465450 7.570000e-22 115.0
78 TraesCS5B01G215100 chr1D 92.593 81 4 1 2018 2096 351919282 351919202 7.570000e-22 115.0
79 TraesCS5B01G215100 chr1D 91.463 82 7 0 2017 2098 418174321 418174402 2.720000e-21 113.0
80 TraesCS5B01G215100 chr4D 85.714 280 33 7 454 727 156511806 156511528 4.220000e-74 289.0
81 TraesCS5B01G215100 chr4D 93.827 81 4 1 2018 2097 490415946 490416026 1.630000e-23 121.0
82 TraesCS5B01G215100 chr4D 87.500 104 5 2 2001 2097 507164682 507164784 2.720000e-21 113.0
83 TraesCS5B01G215100 chr4D 90.588 85 4 4 2018 2101 338019390 338019471 3.520000e-20 110.0
84 TraesCS5B01G215100 chr4D 91.358 81 6 1 2017 2096 490416026 490415946 3.520000e-20 110.0
85 TraesCS5B01G215100 chr1A 83.803 284 40 6 453 732 463934219 463933938 7.110000e-67 265.0
86 TraesCS5B01G215100 chr5A 77.315 432 78 15 2807 3228 607564072 607564493 1.550000e-58 237.0
87 TraesCS5B01G215100 chr4A 96.154 104 3 1 3237 3340 704148382 704148280 5.730000e-38 169.0
88 TraesCS5B01G215100 chr4A 96.117 103 4 0 3239 3341 715072049 715072151 5.730000e-38 169.0
89 TraesCS5B01G215100 chr2A 95.062 81 2 1 2017 2097 341395684 341395606 3.500000e-25 126.0
90 TraesCS5B01G215100 chr7A 93.976 83 3 1 2017 2097 578987834 578987752 1.260000e-24 124.0
91 TraesCS5B01G215100 chr3A 94.048 84 2 2 2017 2100 21358997 21358917 1.260000e-24 124.0
92 TraesCS5B01G215100 chr2D 92.941 85 4 2 2018 2101 382442501 382442418 4.530000e-24 122.0
93 TraesCS5B01G215100 chr2D 93.750 80 3 2 2018 2096 302262689 302262767 5.860000e-23 119.0
94 TraesCS5B01G215100 chr2D 90.426 94 1 4 2017 2103 511529811 511529719 2.110000e-22 117.0
95 TraesCS5B01G215100 chr3D 90.110 91 3 2 2016 2100 163302560 163302470 2.720000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G215100 chr5B 387902497 387905837 3340 True 6170.000000 6170 100.000000 1 3341 1 chr5B.!!$R1 3340
1 TraesCS5B01G215100 chr5B 387952332 387953001 669 True 351.000000 555 90.806000 1341 1880 2 chr5B.!!$R4 539
2 TraesCS5B01G215100 chr5D 332214579 332216846 2267 True 491.550000 843 94.779250 1 2753 4 chr5D.!!$R4 2752
3 TraesCS5B01G215100 chr5D 332221803 332226034 4231 True 483.533333 1210 92.867333 766 2328 6 chr5D.!!$R5 1562
4 TraesCS5B01G215100 chr7B 687588113 687588629 516 True 507.000000 507 85.164000 2750 3242 1 chr7B.!!$R2 492
5 TraesCS5B01G215100 chr6B 716068069 716068600 531 False 420.000000 420 82.022000 2750 3247 1 chr6B.!!$F2 497
6 TraesCS5B01G215100 chr3B 666190408 666190918 510 True 403.000000 403 81.818000 2750 3239 1 chr3B.!!$R3 489
7 TraesCS5B01G215100 chr2B 404544218 404544751 533 True 392.000000 392 81.227000 2750 3246 1 chr2B.!!$R2 496
8 TraesCS5B01G215100 chr1B 643263774 643264284 510 True 377.000000 377 80.843000 2750 3247 1 chr1B.!!$R3 497
9 TraesCS5B01G215100 chr7D 496316375 496316877 502 False 327.000000 327 79.452000 2750 3230 1 chr7D.!!$F1 480
10 TraesCS5B01G215100 chr1D 455549564 455550066 502 True 318.000000 318 79.110000 2750 3239 1 chr1D.!!$R5 489

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
115 116 0.029834 GCACTTGCTGGTTGTGTGAG 59.970 55.0 0.0 0.0 38.21 3.51 F
531 532 0.034477 CGCCCATCAAACCCTACCTT 60.034 55.0 0.0 0.0 0.00 3.50 F
730 731 0.034616 GCACTGAAGCTGAGTCCAGT 59.965 55.0 0.0 0.0 42.35 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1998 4380 0.181114 ACCTGCTGTGCAAGTCTGAA 59.819 50.000 0.0 0.0 38.41 3.02 R
2001 4383 1.001406 GAGTACCTGCTGTGCAAGTCT 59.999 52.381 0.0 0.0 38.41 3.24 R
2563 5930 1.232119 GGAACACGTTTACCACCCTG 58.768 55.000 0.0 0.0 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 7.211966 ACTACTACATGTCACGTTAGAACTT 57.788 36.000 0.00 0.00 0.00 2.66
79 80 6.867293 ACGTTAGAACTTACCATCTGAACTTC 59.133 38.462 0.00 0.00 0.00 3.01
86 87 7.251321 ACTTACCATCTGAACTTCTTCTGAT 57.749 36.000 0.00 0.00 42.70 2.90
98 99 9.671279 TGAACTTCTTCTGATTTTATATCTGCA 57.329 29.630 0.00 0.00 0.00 4.41
99 100 9.928236 GAACTTCTTCTGATTTTATATCTGCAC 57.072 33.333 0.00 0.00 0.00 4.57
101 102 9.678260 ACTTCTTCTGATTTTATATCTGCACTT 57.322 29.630 0.00 0.00 0.00 3.16
102 103 9.932699 CTTCTTCTGATTTTATATCTGCACTTG 57.067 33.333 0.00 0.00 0.00 3.16
106 107 6.261603 TCTGATTTTATATCTGCACTTGCTGG 59.738 38.462 8.09 0.00 42.66 4.85
109 110 5.565592 TTTATATCTGCACTTGCTGGTTG 57.434 39.130 8.09 0.00 42.66 3.77
110 111 2.566833 TATCTGCACTTGCTGGTTGT 57.433 45.000 8.09 0.00 42.66 3.32
111 112 0.956633 ATCTGCACTTGCTGGTTGTG 59.043 50.000 8.09 0.00 42.66 3.33
112 113 0.394216 TCTGCACTTGCTGGTTGTGT 60.394 50.000 8.09 0.00 42.66 3.72
114 115 0.679321 TGCACTTGCTGGTTGTGTGA 60.679 50.000 2.33 0.00 42.66 3.58
115 116 0.029834 GCACTTGCTGGTTGTGTGAG 59.970 55.000 0.00 0.00 38.21 3.51
116 117 1.667236 CACTTGCTGGTTGTGTGAGA 58.333 50.000 0.00 0.00 0.00 3.27
117 118 1.600957 CACTTGCTGGTTGTGTGAGAG 59.399 52.381 0.00 0.00 0.00 3.20
118 119 1.486310 ACTTGCTGGTTGTGTGAGAGA 59.514 47.619 0.00 0.00 0.00 3.10
239 240 1.021390 GTCCATTCTGACTGGTGCCG 61.021 60.000 13.04 0.00 35.19 5.69
352 353 4.570663 CGCGGACGGACATCCTCC 62.571 72.222 0.00 1.93 36.52 4.30
383 384 2.142761 CCATCATCCCTCGCCTCCA 61.143 63.158 0.00 0.00 0.00 3.86
411 412 2.122547 ACCTTCACCCCTCACCGT 60.123 61.111 0.00 0.00 0.00 4.83
507 508 1.000771 TCCCTCTGTCTCCTCGGTG 60.001 63.158 0.00 0.00 0.00 4.94
527 528 1.223487 GCTCGCCCATCAAACCCTA 59.777 57.895 0.00 0.00 0.00 3.53
531 532 0.034477 CGCCCATCAAACCCTACCTT 60.034 55.000 0.00 0.00 0.00 3.50
540 541 0.896940 AACCCTACCTTCGTCGAGCA 60.897 55.000 0.00 0.00 0.00 4.26
610 611 4.480115 TCTGTCTCTCCTGAAAACTACCA 58.520 43.478 0.00 0.00 0.00 3.25
612 613 5.011125 TCTGTCTCTCCTGAAAACTACCAAG 59.989 44.000 0.00 0.00 0.00 3.61
613 614 4.654262 TGTCTCTCCTGAAAACTACCAAGT 59.346 41.667 0.00 0.00 37.65 3.16
614 615 5.221461 TGTCTCTCCTGAAAACTACCAAGTC 60.221 44.000 0.00 0.00 33.75 3.01
615 616 5.011227 GTCTCTCCTGAAAACTACCAAGTCT 59.989 44.000 0.00 0.00 33.75 3.24
616 617 5.011125 TCTCTCCTGAAAACTACCAAGTCTG 59.989 44.000 0.00 0.00 33.75 3.51
627 628 2.869233 CCAAGTCTGGGTGTGTTTTG 57.131 50.000 0.00 0.00 39.30 2.44
628 629 1.408702 CCAAGTCTGGGTGTGTTTTGG 59.591 52.381 0.00 0.00 39.30 3.28
629 630 2.099405 CAAGTCTGGGTGTGTTTTGGT 58.901 47.619 0.00 0.00 0.00 3.67
630 631 2.495669 CAAGTCTGGGTGTGTTTTGGTT 59.504 45.455 0.00 0.00 0.00 3.67
631 632 2.815158 AGTCTGGGTGTGTTTTGGTTT 58.185 42.857 0.00 0.00 0.00 3.27
632 633 2.758423 AGTCTGGGTGTGTTTTGGTTTC 59.242 45.455 0.00 0.00 0.00 2.78
633 634 2.494073 GTCTGGGTGTGTTTTGGTTTCA 59.506 45.455 0.00 0.00 0.00 2.69
634 635 2.757868 TCTGGGTGTGTTTTGGTTTCAG 59.242 45.455 0.00 0.00 0.00 3.02
635 636 2.495669 CTGGGTGTGTTTTGGTTTCAGT 59.504 45.455 0.00 0.00 0.00 3.41
637 638 2.494073 GGGTGTGTTTTGGTTTCAGTCA 59.506 45.455 0.00 0.00 0.00 3.41
638 639 3.056465 GGGTGTGTTTTGGTTTCAGTCAA 60.056 43.478 0.00 0.00 0.00 3.18
639 640 4.382577 GGGTGTGTTTTGGTTTCAGTCAAT 60.383 41.667 0.00 0.00 0.00 2.57
640 641 4.803613 GGTGTGTTTTGGTTTCAGTCAATC 59.196 41.667 0.00 0.00 0.00 2.67
641 642 5.406649 GTGTGTTTTGGTTTCAGTCAATCA 58.593 37.500 0.00 0.00 0.00 2.57
642 643 6.042143 GTGTGTTTTGGTTTCAGTCAATCAT 58.958 36.000 0.00 0.00 0.00 2.45
644 645 6.042143 GTGTTTTGGTTTCAGTCAATCATGT 58.958 36.000 0.00 0.00 0.00 3.21
645 646 6.019640 GTGTTTTGGTTTCAGTCAATCATGTG 60.020 38.462 0.00 0.00 0.00 3.21
646 647 3.921119 TGGTTTCAGTCAATCATGTGC 57.079 42.857 0.00 0.00 0.00 4.57
648 649 2.226437 GGTTTCAGTCAATCATGTGCGT 59.774 45.455 0.00 0.00 0.00 5.24
649 650 3.482786 GTTTCAGTCAATCATGTGCGTC 58.517 45.455 0.00 0.00 0.00 5.19
650 651 1.725641 TCAGTCAATCATGTGCGTCC 58.274 50.000 0.00 0.00 0.00 4.79
651 652 0.371301 CAGTCAATCATGTGCGTCCG 59.629 55.000 0.00 0.00 0.00 4.79
653 654 1.134699 AGTCAATCATGTGCGTCCGAT 60.135 47.619 0.00 0.00 0.00 4.18
654 655 1.004610 GTCAATCATGTGCGTCCGATG 60.005 52.381 0.00 0.00 0.00 3.84
656 657 2.159170 TCAATCATGTGCGTCCGATGTA 60.159 45.455 0.00 0.00 0.00 2.29
658 659 1.099689 TCATGTGCGTCCGATGTAGA 58.900 50.000 0.00 0.00 0.00 2.59
659 660 1.474879 TCATGTGCGTCCGATGTAGAA 59.525 47.619 0.00 0.00 0.00 2.10
660 661 2.100749 TCATGTGCGTCCGATGTAGAAT 59.899 45.455 0.00 0.00 0.00 2.40
661 662 1.921243 TGTGCGTCCGATGTAGAATG 58.079 50.000 0.00 0.00 0.00 2.67
662 663 1.474879 TGTGCGTCCGATGTAGAATGA 59.525 47.619 0.00 0.00 0.00 2.57
664 665 1.749063 TGCGTCCGATGTAGAATGAGT 59.251 47.619 0.00 0.00 0.00 3.41
666 667 2.732366 CGTCCGATGTAGAATGAGTGG 58.268 52.381 0.00 0.00 0.00 4.00
667 668 2.474816 GTCCGATGTAGAATGAGTGGC 58.525 52.381 0.00 0.00 0.00 5.01
668 669 2.107366 TCCGATGTAGAATGAGTGGCA 58.893 47.619 0.00 0.00 0.00 4.92
669 670 2.101415 TCCGATGTAGAATGAGTGGCAG 59.899 50.000 0.00 0.00 0.00 4.85
670 671 2.101415 CCGATGTAGAATGAGTGGCAGA 59.899 50.000 0.00 0.00 0.00 4.26
671 672 3.244009 CCGATGTAGAATGAGTGGCAGAT 60.244 47.826 0.00 0.00 0.00 2.90
672 673 4.021981 CCGATGTAGAATGAGTGGCAGATA 60.022 45.833 0.00 0.00 0.00 1.98
674 675 6.162079 CGATGTAGAATGAGTGGCAGATATT 58.838 40.000 0.00 0.00 0.00 1.28
675 676 6.090493 CGATGTAGAATGAGTGGCAGATATTG 59.910 42.308 0.00 0.00 0.00 1.90
676 677 6.239217 TGTAGAATGAGTGGCAGATATTGT 57.761 37.500 0.00 0.00 0.00 2.71
678 679 7.791029 TGTAGAATGAGTGGCAGATATTGTAA 58.209 34.615 0.00 0.00 0.00 2.41
680 681 5.762218 AGAATGAGTGGCAGATATTGTAAGC 59.238 40.000 0.00 0.00 0.00 3.09
681 682 4.760530 TGAGTGGCAGATATTGTAAGCT 57.239 40.909 0.00 0.00 0.00 3.74
683 684 6.233905 TGAGTGGCAGATATTGTAAGCTAA 57.766 37.500 0.00 0.00 0.00 3.09
685 686 5.615289 AGTGGCAGATATTGTAAGCTAAGG 58.385 41.667 0.00 0.00 0.00 2.69
686 687 4.214332 GTGGCAGATATTGTAAGCTAAGGC 59.786 45.833 0.00 0.00 39.06 4.35
687 688 3.433615 GGCAGATATTGTAAGCTAAGGCG 59.566 47.826 0.00 0.00 44.37 5.52
690 691 4.387256 CAGATATTGTAAGCTAAGGCGCTC 59.613 45.833 7.64 0.00 44.37 5.03
691 692 2.990066 ATTGTAAGCTAAGGCGCTCT 57.010 45.000 7.64 0.00 44.37 4.09
692 693 2.010145 TTGTAAGCTAAGGCGCTCTG 57.990 50.000 7.64 0.00 44.37 3.35
693 694 0.895530 TGTAAGCTAAGGCGCTCTGT 59.104 50.000 7.64 0.00 44.37 3.41
694 695 1.281899 GTAAGCTAAGGCGCTCTGTG 58.718 55.000 7.64 1.02 44.37 3.66
695 696 0.460284 TAAGCTAAGGCGCTCTGTGC 60.460 55.000 7.64 10.71 44.37 4.57
702 703 3.360340 GCGCTCTGTGCCTTTGCT 61.360 61.111 0.00 0.00 38.78 3.91
703 704 2.866028 CGCTCTGTGCCTTTGCTC 59.134 61.111 0.00 0.00 38.78 4.26
705 706 1.233285 CGCTCTGTGCCTTTGCTCTT 61.233 55.000 0.00 0.00 38.78 2.85
707 708 1.888215 CTCTGTGCCTTTGCTCTTCA 58.112 50.000 0.00 0.00 38.71 3.02
709 710 2.620115 CTCTGTGCCTTTGCTCTTCAAA 59.380 45.455 0.00 0.00 42.01 2.69
717 718 2.346766 TTGCTCTTCAAAGGCACTGA 57.653 45.000 5.70 0.00 40.86 3.41
718 719 2.346766 TGCTCTTCAAAGGCACTGAA 57.653 45.000 1.94 1.94 40.86 3.02
722 723 2.224606 TCTTCAAAGGCACTGAAGCTG 58.775 47.619 18.60 3.05 46.22 4.24
723 724 2.158769 TCTTCAAAGGCACTGAAGCTGA 60.159 45.455 18.60 4.92 46.22 4.26
725 726 1.141657 TCAAAGGCACTGAAGCTGAGT 59.858 47.619 0.00 0.00 40.86 3.41
727 728 0.036022 AAGGCACTGAAGCTGAGTCC 59.964 55.000 0.00 0.00 40.86 3.85
729 730 0.673022 GGCACTGAAGCTGAGTCCAG 60.673 60.000 0.00 0.00 43.22 3.86
730 731 0.034616 GCACTGAAGCTGAGTCCAGT 59.965 55.000 0.00 0.00 42.35 4.00
731 732 1.273606 GCACTGAAGCTGAGTCCAGTA 59.726 52.381 0.00 0.00 42.35 2.74
734 735 2.225142 ACTGAAGCTGAGTCCAGTAGGA 60.225 50.000 0.00 0.00 42.35 2.94
735 736 2.426738 CTGAAGCTGAGTCCAGTAGGAG 59.573 54.545 0.00 0.00 46.92 3.69
748 749 8.638629 AGTCCAGTAGGAGTATATGTTATGTC 57.361 38.462 0.00 0.00 45.93 3.06
749 750 7.670559 AGTCCAGTAGGAGTATATGTTATGTCC 59.329 40.741 0.00 0.00 45.93 4.02
750 751 7.450634 GTCCAGTAGGAGTATATGTTATGTCCA 59.549 40.741 0.00 0.00 46.92 4.02
751 752 8.177456 TCCAGTAGGAGTATATGTTATGTCCAT 58.823 37.037 0.00 0.00 39.61 3.41
753 754 9.249053 CAGTAGGAGTATATGTTATGTCCATCT 57.751 37.037 0.00 0.00 0.00 2.90
754 755 9.469097 AGTAGGAGTATATGTTATGTCCATCTC 57.531 37.037 0.00 0.00 0.00 2.75
757 758 8.173412 AGGAGTATATGTTATGTCCATCTCTGA 58.827 37.037 0.00 0.00 0.00 3.27
758 759 8.465999 GGAGTATATGTTATGTCCATCTCTGAG 58.534 40.741 0.00 0.00 0.00 3.35
759 760 8.948401 AGTATATGTTATGTCCATCTCTGAGT 57.052 34.615 4.32 0.00 0.00 3.41
760 761 9.019656 AGTATATGTTATGTCCATCTCTGAGTC 57.980 37.037 4.32 0.00 0.00 3.36
761 762 5.543507 ATGTTATGTCCATCTCTGAGTCC 57.456 43.478 4.32 0.00 0.00 3.85
762 763 4.614475 TGTTATGTCCATCTCTGAGTCCT 58.386 43.478 4.32 0.00 0.00 3.85
763 764 4.646945 TGTTATGTCCATCTCTGAGTCCTC 59.353 45.833 4.32 0.00 0.00 3.71
764 765 1.756430 TGTCCATCTCTGAGTCCTCG 58.244 55.000 4.32 0.00 0.00 4.63
765 766 1.282157 TGTCCATCTCTGAGTCCTCGA 59.718 52.381 4.32 0.00 0.00 4.04
766 767 1.673920 GTCCATCTCTGAGTCCTCGAC 59.326 57.143 4.32 1.81 0.00 4.20
767 768 1.562008 TCCATCTCTGAGTCCTCGACT 59.438 52.381 4.32 0.00 46.42 4.18
826 2613 5.103687 GGCCAAACAACTTCTTTAAACGAA 58.896 37.500 0.00 0.00 0.00 3.85
842 2629 9.226345 CTTTAAACGAAAGAAAGATGCATATCC 57.774 33.333 0.00 0.00 46.57 2.59
844 2631 5.998454 ACGAAAGAAAGATGCATATCCAG 57.002 39.130 0.00 0.00 33.64 3.86
854 2641 7.698506 AAGATGCATATCCAGTTATCATTGG 57.301 36.000 0.00 0.00 33.64 3.16
875 2662 5.962433 TGGTCGTTTCTTCGAATTAGAGAT 58.038 37.500 0.00 0.00 41.47 2.75
876 2663 5.805486 TGGTCGTTTCTTCGAATTAGAGATG 59.195 40.000 0.00 0.00 41.47 2.90
881 2668 6.920758 CGTTTCTTCGAATTAGAGATGAGGAT 59.079 38.462 0.00 0.00 0.00 3.24
914 2701 2.835764 AGAAACTACTTCCATACCGGCA 59.164 45.455 0.00 0.00 34.21 5.69
933 2720 0.824759 AACCGCTACCACATCTCTCC 59.175 55.000 0.00 0.00 0.00 3.71
1007 2794 4.305769 TGCACCAAACAGCACATAAATTC 58.694 39.130 0.00 0.00 35.51 2.17
1035 2822 8.547967 TTGCTTATATTCTTCTTCGTGTTTCT 57.452 30.769 0.00 0.00 0.00 2.52
1178 2965 3.912745 AACCATCCCAACGGGCGAC 62.913 63.158 0.00 0.00 43.94 5.19
1192 2979 2.954753 GCGACGTGCCAAGTCCAAG 61.955 63.158 5.18 0.00 37.76 3.61
1243 3030 2.751357 TTAACCCCAAGAACCGCGGG 62.751 60.000 31.76 11.11 41.71 6.13
1250 3037 3.561120 AAGAACCGCGGGCCATTCA 62.561 57.895 31.76 0.00 0.00 2.57
1251 3038 2.828549 GAACCGCGGGCCATTCAT 60.829 61.111 31.76 1.49 0.00 2.57
1259 3046 0.382873 CGGGCCATTCATCATGTGTG 59.617 55.000 4.39 0.00 0.00 3.82
1277 3064 7.446931 TCATGTGTGCCTTCTTCTTTACATTTA 59.553 33.333 0.00 0.00 0.00 1.40
1278 3065 7.759489 TGTGTGCCTTCTTCTTTACATTTAT 57.241 32.000 0.00 0.00 0.00 1.40
1330 3117 2.112297 GTCAACGAGGCCCAACCA 59.888 61.111 0.00 0.00 43.14 3.67
1333 3120 3.175710 AACGAGGCCCAACCACCT 61.176 61.111 0.00 0.00 43.14 4.00
1416 3203 2.358247 GACTTCGCCGGCTTTCCA 60.358 61.111 26.68 2.07 0.00 3.53
1433 3220 0.178992 CCACCTTGCCTTGGACTTCA 60.179 55.000 0.00 0.00 34.46 3.02
1449 3236 2.878406 ACTTCAATTGGACACCACGAAG 59.122 45.455 5.42 15.79 38.96 3.79
1553 3376 1.812686 TTTCTGCGTCTACGGCCACT 61.813 55.000 2.24 0.00 40.23 4.00
1669 3496 1.533469 CGTGGGGAAGGTCGAGTTCT 61.533 60.000 7.26 0.00 0.00 3.01
1720 3547 1.139989 TCTTCGCTGCAAGTTCTTCG 58.860 50.000 0.00 0.00 35.30 3.79
1725 3552 1.992667 CGCTGCAAGTTCTTCGTCATA 59.007 47.619 0.00 0.00 35.30 2.15
1747 3574 0.107456 AGATAAGGCTGCGGATGTGG 59.893 55.000 0.00 0.00 0.00 4.17
1770 3722 4.479993 AGCCTGTGCATCCTCCGC 62.480 66.667 0.00 0.00 41.13 5.54
1773 3725 2.513204 CTGTGCATCCTCCGCCAG 60.513 66.667 0.00 0.00 0.00 4.85
1875 4249 6.736123 AGCTGCTATATTCTGCTTTGAAATG 58.264 36.000 0.00 0.00 35.63 2.32
1881 4255 9.357652 GCTATATTCTGCTTTGAAATGAAACAA 57.642 29.630 0.00 0.00 0.00 2.83
1954 4336 0.901827 TAGCTCAATCCTCCGTGCAA 59.098 50.000 0.00 0.00 0.00 4.08
1964 4346 2.690497 TCCTCCGTGCAAAAATTCAACA 59.310 40.909 0.00 0.00 0.00 3.33
1966 4348 3.243367 CCTCCGTGCAAAAATTCAACAGA 60.243 43.478 0.00 0.00 0.00 3.41
1969 4351 4.564769 TCCGTGCAAAAATTCAACAGAAAC 59.435 37.500 0.00 0.00 0.00 2.78
1974 4356 7.517321 GTGCAAAAATTCAACAGAAACTTTCA 58.483 30.769 4.34 0.00 0.00 2.69
1994 4376 3.056107 TCACCATACTGTGTAGGCTTCAC 60.056 47.826 16.37 16.37 37.51 3.18
1995 4377 2.236395 ACCATACTGTGTAGGCTTCACC 59.764 50.000 19.71 4.64 35.25 4.02
1996 4378 2.540515 CATACTGTGTAGGCTTCACCG 58.459 52.381 19.71 16.15 46.52 4.94
1997 4379 0.245539 TACTGTGTAGGCTTCACCGC 59.754 55.000 19.71 0.00 46.52 5.68
1998 4380 1.293498 CTGTGTAGGCTTCACCGCT 59.707 57.895 19.71 0.00 46.52 5.52
1999 4381 0.320771 CTGTGTAGGCTTCACCGCTT 60.321 55.000 19.71 0.00 46.52 4.68
2000 4382 0.320421 TGTGTAGGCTTCACCGCTTC 60.320 55.000 19.71 0.00 46.52 3.86
2001 4383 0.320421 GTGTAGGCTTCACCGCTTCA 60.320 55.000 12.73 0.00 46.52 3.02
2010 4392 0.880278 TCACCGCTTCAGACTTGCAC 60.880 55.000 0.00 0.00 0.00 4.57
2012 4394 0.882042 ACCGCTTCAGACTTGCACAG 60.882 55.000 0.00 0.00 0.00 3.66
2016 4398 0.873054 CTTCAGACTTGCACAGCAGG 59.127 55.000 0.00 0.00 40.61 4.85
2021 4403 3.614399 ACTTGCACAGCAGGTACTC 57.386 52.632 4.88 0.00 46.59 2.59
2022 4404 0.035458 ACTTGCACAGCAGGTACTCC 59.965 55.000 4.88 0.00 46.59 3.85
2023 4405 0.674895 CTTGCACAGCAGGTACTCCC 60.675 60.000 0.00 0.00 40.61 4.30
2025 4407 1.219393 GCACAGCAGGTACTCCCTC 59.781 63.158 0.00 0.00 43.86 4.30
2026 4408 1.901085 CACAGCAGGTACTCCCTCC 59.099 63.158 0.00 0.00 43.86 4.30
2027 4409 1.682684 ACAGCAGGTACTCCCTCCG 60.683 63.158 0.00 0.00 43.86 4.63
2028 4410 1.682684 CAGCAGGTACTCCCTCCGT 60.683 63.158 0.00 0.00 43.86 4.69
2029 4411 1.078710 AGCAGGTACTCCCTCCGTT 59.921 57.895 0.00 0.00 43.86 4.44
2030 4412 0.971447 AGCAGGTACTCCCTCCGTTC 60.971 60.000 0.00 0.00 43.86 3.95
2031 4413 1.957765 GCAGGTACTCCCTCCGTTCC 61.958 65.000 0.00 0.00 43.86 3.62
2032 4414 0.613853 CAGGTACTCCCTCCGTTCCA 60.614 60.000 0.00 0.00 43.86 3.53
2033 4415 0.115745 AGGTACTCCCTCCGTTCCAA 59.884 55.000 0.00 0.00 40.71 3.53
2034 4416 0.978907 GGTACTCCCTCCGTTCCAAA 59.021 55.000 0.00 0.00 0.00 3.28
2035 4417 1.558294 GGTACTCCCTCCGTTCCAAAT 59.442 52.381 0.00 0.00 0.00 2.32
2036 4418 2.026542 GGTACTCCCTCCGTTCCAAATT 60.027 50.000 0.00 0.00 0.00 1.82
2037 4419 3.198417 GGTACTCCCTCCGTTCCAAATTA 59.802 47.826 0.00 0.00 0.00 1.40
2038 4420 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2039 4421 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2040 4422 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2041 4423 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
2042 4424 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
2043 4425 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
2044 4426 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
2045 4427 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
2046 4428 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
2047 4429 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
2048 4430 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
2049 4431 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
2050 4432 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
2051 4433 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
2052 4434 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
2053 4435 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
2054 4436 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
2055 4437 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
2056 4438 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
2057 4439 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
2058 4440 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
2059 4441 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
2060 4442 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
2061 4443 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
2062 4444 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
2063 4445 7.011295 ACTCGTCGTGGTTTTAGTTCAAATTTA 59.989 33.333 0.00 0.00 0.00 1.40
2064 4446 7.692088 TCGTCGTGGTTTTAGTTCAAATTTAA 58.308 30.769 0.00 0.00 0.00 1.52
2065 4447 7.639461 TCGTCGTGGTTTTAGTTCAAATTTAAC 59.361 33.333 0.00 0.00 0.00 2.01
2066 4448 7.096925 CGTCGTGGTTTTAGTTCAAATTTAACC 60.097 37.037 9.04 9.04 0.00 2.85
2067 4449 7.701501 GTCGTGGTTTTAGTTCAAATTTAACCA 59.298 33.333 13.12 13.12 33.05 3.67
2068 4450 7.701501 TCGTGGTTTTAGTTCAAATTTAACCAC 59.298 33.333 26.14 26.14 44.12 4.16
2069 4451 7.833539 GTGGTTTTAGTTCAAATTTAACCACG 58.166 34.615 23.82 0.56 41.21 4.94
2070 4452 7.701501 GTGGTTTTAGTTCAAATTTAACCACGA 59.298 33.333 23.82 2.70 41.21 4.35
2071 4453 7.701501 TGGTTTTAGTTCAAATTTAACCACGAC 59.298 33.333 13.12 6.09 31.34 4.34
2072 4454 7.096925 GGTTTTAGTTCAAATTTAACCACGACG 60.097 37.037 10.54 0.00 0.00 5.12
2073 4455 6.841443 TTAGTTCAAATTTAACCACGACGA 57.159 33.333 0.00 0.00 0.00 4.20
2074 4456 5.338614 AGTTCAAATTTAACCACGACGAG 57.661 39.130 0.00 0.00 0.00 4.18
2075 4457 4.812626 AGTTCAAATTTAACCACGACGAGT 59.187 37.500 0.00 0.00 0.00 4.18
2076 4458 5.984926 AGTTCAAATTTAACCACGACGAGTA 59.015 36.000 0.00 0.00 0.00 2.59
2077 4459 6.479660 AGTTCAAATTTAACCACGACGAGTAA 59.520 34.615 0.00 0.00 0.00 2.24
2078 4460 7.172019 AGTTCAAATTTAACCACGACGAGTAAT 59.828 33.333 0.00 0.00 0.00 1.89
2079 4461 7.424227 TCAAATTTAACCACGACGAGTAATT 57.576 32.000 0.00 0.37 0.00 1.40
2080 4462 7.863666 TCAAATTTAACCACGACGAGTAATTT 58.136 30.769 0.00 6.22 30.42 1.82
2081 4463 7.799447 TCAAATTTAACCACGACGAGTAATTTG 59.201 33.333 21.60 21.60 41.02 2.32
2082 4464 5.594724 TTTAACCACGACGAGTAATTTGG 57.405 39.130 0.00 0.00 0.00 3.28
2083 4465 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
2084 4466 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
2085 4467 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
2086 4468 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
2087 4469 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
2088 4470 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
2089 4471 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2090 4472 3.671433 CGACGAGTAATTTGGAACGGAGA 60.671 47.826 0.00 0.00 0.00 3.71
2091 4473 3.846360 ACGAGTAATTTGGAACGGAGAG 58.154 45.455 0.00 0.00 0.00 3.20
2092 4474 3.508793 ACGAGTAATTTGGAACGGAGAGA 59.491 43.478 0.00 0.00 0.00 3.10
2190 4572 3.321497 GTTCTACTCAGCTGTTGGACTG 58.679 50.000 14.67 0.00 35.15 3.51
2492 5829 9.234827 TCAATTTGTCATACAGTCATTTGATCT 57.765 29.630 0.00 0.00 0.00 2.75
2529 5896 3.738982 TCATGATTGAATATTCGGGCGT 58.261 40.909 10.80 1.33 0.00 5.68
2550 5917 1.446099 TGCTCTTTCCGCAGCGTAG 60.446 57.895 15.05 8.20 38.59 3.51
2582 5949 1.232119 CAGGGTGGTAAACGTGTTCC 58.768 55.000 0.00 0.00 0.00 3.62
2584 5951 1.212441 AGGGTGGTAAACGTGTTCCAA 59.788 47.619 5.54 0.00 0.00 3.53
2828 6199 2.398554 GCGCAAAAGATCGGCCTGA 61.399 57.895 0.30 0.00 0.00 3.86
2875 6246 2.845795 AGGACCGTCCCCAAACGT 60.846 61.111 14.32 0.00 41.01 3.99
2943 6335 4.148174 GCTAAAATTCGACAAACTTGGCAC 59.852 41.667 0.00 0.00 35.35 5.01
2953 6345 5.447279 CGACAAACTTGGCACATATTAGACC 60.447 44.000 0.00 0.00 39.30 3.85
2963 6356 4.504461 GCACATATTAGACCTGTTCGACAG 59.496 45.833 7.72 7.72 45.53 3.51
2976 6369 5.351465 CCTGTTCGACAGTTTACATAGCAAT 59.649 40.000 12.10 0.00 44.50 3.56
2980 6373 8.132362 TGTTCGACAGTTTACATAGCAATTTTT 58.868 29.630 0.00 0.00 0.00 1.94
3020 6416 3.939592 ACTACAAATAAGGGCGAAGAAGC 59.060 43.478 0.00 0.00 0.00 3.86
3074 6506 1.545706 GGCCTTCTCCTCCTTGACGT 61.546 60.000 0.00 0.00 0.00 4.34
3162 6610 2.257676 GACGACGACGCCTCCTTT 59.742 61.111 7.30 0.00 43.96 3.11
3243 6691 0.171231 CATCTTGAGCCAGTCGTCGA 59.829 55.000 0.00 0.00 0.00 4.20
3247 6695 4.104417 GAGCCAGTCGTCGAGCGT 62.104 66.667 0.00 0.00 42.13 5.07
3248 6696 4.406173 AGCCAGTCGTCGAGCGTG 62.406 66.667 0.00 0.00 42.13 5.34
3293 6741 3.121030 CGCCCCTCGCTGTTCTTG 61.121 66.667 0.00 0.00 34.21 3.02
3294 6742 2.347490 GCCCCTCGCTGTTCTTGA 59.653 61.111 0.00 0.00 0.00 3.02
3295 6743 2.035442 GCCCCTCGCTGTTCTTGAC 61.035 63.158 0.00 0.00 0.00 3.18
3296 6744 1.738099 CCCCTCGCTGTTCTTGACG 60.738 63.158 0.00 0.00 0.00 4.35
3297 6745 2.383527 CCCTCGCTGTTCTTGACGC 61.384 63.158 0.00 0.00 0.00 5.19
3298 6746 2.383527 CCTCGCTGTTCTTGACGCC 61.384 63.158 0.00 0.00 0.00 5.68
3299 6747 2.720758 CTCGCTGTTCTTGACGCCG 61.721 63.158 0.00 0.00 0.00 6.46
3300 6748 4.430423 CGCTGTTCTTGACGCCGC 62.430 66.667 0.00 0.00 0.00 6.53
3301 6749 4.090057 GCTGTTCTTGACGCCGCC 62.090 66.667 0.00 0.00 0.00 6.13
3302 6750 3.423154 CTGTTCTTGACGCCGCCC 61.423 66.667 0.00 0.00 0.00 6.13
3303 6751 4.243008 TGTTCTTGACGCCGCCCA 62.243 61.111 0.00 0.00 0.00 5.36
3304 6752 3.723348 GTTCTTGACGCCGCCCAC 61.723 66.667 0.00 0.00 0.00 4.61
3330 6778 4.263572 CCCTGTTGGTGGACGCCA 62.264 66.667 0.00 0.00 36.62 5.69
3331 6779 2.203280 CCTGTTGGTGGACGCCAA 60.203 61.111 12.97 12.97 45.37 4.52
3335 6783 2.112297 TTGGTGGACGCCAACCTC 59.888 61.111 12.97 0.00 41.25 3.85
3336 6784 2.448582 TTGGTGGACGCCAACCTCT 61.449 57.895 12.97 0.00 41.25 3.69
3337 6785 2.358737 GGTGGACGCCAACCTCTG 60.359 66.667 2.84 0.00 34.66 3.35
3338 6786 3.050275 GTGGACGCCAACCTCTGC 61.050 66.667 0.00 0.00 34.18 4.26
3339 6787 3.241530 TGGACGCCAACCTCTGCT 61.242 61.111 0.00 0.00 0.00 4.24
3340 6788 2.435059 GGACGCCAACCTCTGCTC 60.435 66.667 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 5.242171 TCAGATGGTAAGTTCTAACGTGACA 59.758 40.000 0.00 0.00 0.00 3.58
79 80 7.856398 CAGCAAGTGCAGATATAAAATCAGAAG 59.144 37.037 6.00 0.00 45.16 2.85
86 87 5.476599 ACAACCAGCAAGTGCAGATATAAAA 59.523 36.000 6.00 0.00 45.16 1.52
96 97 0.029834 CTCACACAACCAGCAAGTGC 59.970 55.000 0.00 0.00 42.49 4.40
97 98 1.600957 CTCTCACACAACCAGCAAGTG 59.399 52.381 0.00 0.00 39.12 3.16
98 99 1.486310 TCTCTCACACAACCAGCAAGT 59.514 47.619 0.00 0.00 0.00 3.16
99 100 2.141517 CTCTCTCACACAACCAGCAAG 58.858 52.381 0.00 0.00 0.00 4.01
101 102 1.342496 CTCTCTCTCACACAACCAGCA 59.658 52.381 0.00 0.00 0.00 4.41
102 103 1.615883 TCTCTCTCTCACACAACCAGC 59.384 52.381 0.00 0.00 0.00 4.85
106 107 4.699735 TCTGATCTCTCTCTCTCACACAAC 59.300 45.833 0.00 0.00 0.00 3.32
109 110 5.734220 GCATTCTGATCTCTCTCTCTCACAC 60.734 48.000 0.00 0.00 0.00 3.82
110 111 4.338964 GCATTCTGATCTCTCTCTCTCACA 59.661 45.833 0.00 0.00 0.00 3.58
111 112 4.555313 CGCATTCTGATCTCTCTCTCTCAC 60.555 50.000 0.00 0.00 0.00 3.51
112 113 3.565063 CGCATTCTGATCTCTCTCTCTCA 59.435 47.826 0.00 0.00 0.00 3.27
114 115 3.316029 CACGCATTCTGATCTCTCTCTCT 59.684 47.826 0.00 0.00 0.00 3.10
115 116 3.314913 TCACGCATTCTGATCTCTCTCTC 59.685 47.826 0.00 0.00 0.00 3.20
116 117 3.286353 TCACGCATTCTGATCTCTCTCT 58.714 45.455 0.00 0.00 0.00 3.10
117 118 3.706802 TCACGCATTCTGATCTCTCTC 57.293 47.619 0.00 0.00 0.00 3.20
118 119 4.462508 TTTCACGCATTCTGATCTCTCT 57.537 40.909 0.00 0.00 0.00 3.10
411 412 3.011517 GAGAGCAAGGAGGGGCCA 61.012 66.667 4.39 0.00 40.02 5.36
459 460 4.803426 GTGCCGCCGTGAGAGGAG 62.803 72.222 0.00 0.00 0.00 3.69
507 508 2.115291 GGGTTTGATGGGCGAGCTC 61.115 63.158 2.73 2.73 0.00 4.09
517 518 2.165845 CTCGACGAAGGTAGGGTTTGAT 59.834 50.000 0.00 0.00 0.00 2.57
527 528 1.005037 TGCATTGCTCGACGAAGGT 60.005 52.632 10.49 0.00 0.00 3.50
531 532 1.153765 CTCCTGCATTGCTCGACGA 60.154 57.895 10.49 0.00 0.00 4.20
540 541 0.911769 TGGGATCGTTCTCCTGCATT 59.088 50.000 0.00 0.00 35.50 3.56
610 611 2.525105 ACCAAAACACACCCAGACTT 57.475 45.000 0.00 0.00 0.00 3.01
612 613 2.494073 TGAAACCAAAACACACCCAGAC 59.506 45.455 0.00 0.00 0.00 3.51
613 614 2.757868 CTGAAACCAAAACACACCCAGA 59.242 45.455 0.00 0.00 0.00 3.86
614 615 2.495669 ACTGAAACCAAAACACACCCAG 59.504 45.455 0.00 0.00 0.00 4.45
615 616 2.494073 GACTGAAACCAAAACACACCCA 59.506 45.455 0.00 0.00 0.00 4.51
616 617 2.494073 TGACTGAAACCAAAACACACCC 59.506 45.455 0.00 0.00 0.00 4.61
617 618 3.859411 TGACTGAAACCAAAACACACC 57.141 42.857 0.00 0.00 0.00 4.16
618 619 5.406649 TGATTGACTGAAACCAAAACACAC 58.593 37.500 0.00 0.00 0.00 3.82
619 620 5.651387 TGATTGACTGAAACCAAAACACA 57.349 34.783 0.00 0.00 0.00 3.72
620 621 6.019640 CACATGATTGACTGAAACCAAAACAC 60.020 38.462 0.00 0.00 0.00 3.32
621 622 6.041511 CACATGATTGACTGAAACCAAAACA 58.958 36.000 0.00 0.00 0.00 2.83
622 623 5.050837 GCACATGATTGACTGAAACCAAAAC 60.051 40.000 0.00 0.00 0.00 2.43
623 624 5.049167 GCACATGATTGACTGAAACCAAAA 58.951 37.500 0.00 0.00 0.00 2.44
624 625 4.619973 GCACATGATTGACTGAAACCAAA 58.380 39.130 0.00 0.00 0.00 3.28
625 626 3.304592 CGCACATGATTGACTGAAACCAA 60.305 43.478 0.00 0.00 0.00 3.67
626 627 2.226200 CGCACATGATTGACTGAAACCA 59.774 45.455 0.00 0.00 0.00 3.67
627 628 2.226437 ACGCACATGATTGACTGAAACC 59.774 45.455 0.00 0.00 0.00 3.27
628 629 3.482786 GACGCACATGATTGACTGAAAC 58.517 45.455 0.00 0.00 0.00 2.78
629 630 2.483877 GGACGCACATGATTGACTGAAA 59.516 45.455 0.00 0.00 0.00 2.69
630 631 2.076100 GGACGCACATGATTGACTGAA 58.924 47.619 0.00 0.00 0.00 3.02
631 632 1.725641 GGACGCACATGATTGACTGA 58.274 50.000 0.00 0.00 0.00 3.41
632 633 0.371301 CGGACGCACATGATTGACTG 59.629 55.000 0.00 0.00 0.00 3.51
633 634 0.246360 TCGGACGCACATGATTGACT 59.754 50.000 0.00 0.00 0.00 3.41
634 635 1.004610 CATCGGACGCACATGATTGAC 60.005 52.381 0.00 0.00 0.00 3.18
635 636 1.289276 CATCGGACGCACATGATTGA 58.711 50.000 0.00 0.00 0.00 2.57
637 638 2.100749 TCTACATCGGACGCACATGATT 59.899 45.455 0.00 0.00 0.00 2.57
638 639 1.681264 TCTACATCGGACGCACATGAT 59.319 47.619 0.00 0.00 0.00 2.45
639 640 1.099689 TCTACATCGGACGCACATGA 58.900 50.000 0.00 0.00 0.00 3.07
640 641 1.921243 TTCTACATCGGACGCACATG 58.079 50.000 0.00 0.00 0.00 3.21
641 642 2.100749 TCATTCTACATCGGACGCACAT 59.899 45.455 0.00 0.00 0.00 3.21
642 643 1.474879 TCATTCTACATCGGACGCACA 59.525 47.619 0.00 0.00 0.00 4.57
644 645 1.749063 ACTCATTCTACATCGGACGCA 59.251 47.619 0.00 0.00 0.00 5.24
645 646 2.120232 CACTCATTCTACATCGGACGC 58.880 52.381 0.00 0.00 0.00 5.19
646 647 2.732366 CCACTCATTCTACATCGGACG 58.268 52.381 0.00 0.00 0.00 4.79
648 649 2.101415 CTGCCACTCATTCTACATCGGA 59.899 50.000 0.00 0.00 0.00 4.55
649 650 2.101415 TCTGCCACTCATTCTACATCGG 59.899 50.000 0.00 0.00 0.00 4.18
650 651 3.443099 TCTGCCACTCATTCTACATCG 57.557 47.619 0.00 0.00 0.00 3.84
651 652 6.933521 ACAATATCTGCCACTCATTCTACATC 59.066 38.462 0.00 0.00 0.00 3.06
653 654 6.239217 ACAATATCTGCCACTCATTCTACA 57.761 37.500 0.00 0.00 0.00 2.74
654 655 7.095439 GCTTACAATATCTGCCACTCATTCTAC 60.095 40.741 0.00 0.00 0.00 2.59
656 657 5.762218 GCTTACAATATCTGCCACTCATTCT 59.238 40.000 0.00 0.00 0.00 2.40
658 659 5.688807 AGCTTACAATATCTGCCACTCATT 58.311 37.500 0.00 0.00 0.00 2.57
659 660 5.301835 AGCTTACAATATCTGCCACTCAT 57.698 39.130 0.00 0.00 0.00 2.90
660 661 4.760530 AGCTTACAATATCTGCCACTCA 57.239 40.909 0.00 0.00 0.00 3.41
661 662 5.698545 CCTTAGCTTACAATATCTGCCACTC 59.301 44.000 0.00 0.00 0.00 3.51
662 663 5.615289 CCTTAGCTTACAATATCTGCCACT 58.385 41.667 0.00 0.00 0.00 4.00
664 665 4.389374 GCCTTAGCTTACAATATCTGCCA 58.611 43.478 0.00 0.00 35.50 4.92
666 667 3.120511 GCGCCTTAGCTTACAATATCTGC 60.121 47.826 0.00 0.00 36.60 4.26
667 668 4.310769 AGCGCCTTAGCTTACAATATCTG 58.689 43.478 2.29 0.00 46.80 2.90
668 669 4.608948 AGCGCCTTAGCTTACAATATCT 57.391 40.909 2.29 0.00 46.80 1.98
687 688 0.520847 GAAGAGCAAAGGCACAGAGC 59.479 55.000 0.00 0.00 44.61 4.09
697 698 2.653726 TCAGTGCCTTTGAAGAGCAAA 58.346 42.857 7.98 0.00 43.89 3.68
698 699 2.346766 TCAGTGCCTTTGAAGAGCAA 57.653 45.000 7.98 0.00 35.20 3.91
705 706 1.141657 ACTCAGCTTCAGTGCCTTTGA 59.858 47.619 0.00 0.00 0.00 2.69
707 708 1.544314 GGACTCAGCTTCAGTGCCTTT 60.544 52.381 0.00 0.00 0.00 3.11
709 710 1.123861 TGGACTCAGCTTCAGTGCCT 61.124 55.000 10.60 0.00 31.44 4.75
710 711 0.673022 CTGGACTCAGCTTCAGTGCC 60.673 60.000 10.60 7.50 33.86 5.01
711 712 0.034616 ACTGGACTCAGCTTCAGTGC 59.965 55.000 7.05 7.05 44.59 4.40
712 713 2.094286 CCTACTGGACTCAGCTTCAGTG 60.094 54.545 0.00 0.00 44.59 3.66
713 714 2.175202 CCTACTGGACTCAGCTTCAGT 58.825 52.381 0.00 0.00 44.59 3.41
717 718 2.614134 ACTCCTACTGGACTCAGCTT 57.386 50.000 0.00 0.00 44.59 3.74
718 719 3.963476 ATACTCCTACTGGACTCAGCT 57.037 47.619 0.00 0.00 44.59 4.24
719 720 5.074115 ACATATACTCCTACTGGACTCAGC 58.926 45.833 0.00 0.00 44.59 4.26
722 723 8.638629 ACATAACATATACTCCTACTGGACTC 57.361 38.462 0.00 0.00 37.46 3.36
723 724 7.670559 GGACATAACATATACTCCTACTGGACT 59.329 40.741 0.00 0.00 37.46 3.85
725 726 7.532199 TGGACATAACATATACTCCTACTGGA 58.468 38.462 0.00 0.00 40.69 3.86
727 728 9.249053 AGATGGACATAACATATACTCCTACTG 57.751 37.037 0.00 0.00 0.00 2.74
729 730 9.469097 AGAGATGGACATAACATATACTCCTAC 57.531 37.037 0.00 0.00 0.00 3.18
730 731 9.467796 CAGAGATGGACATAACATATACTCCTA 57.532 37.037 0.00 0.00 0.00 2.94
731 732 8.173412 TCAGAGATGGACATAACATATACTCCT 58.827 37.037 0.00 0.00 0.00 3.69
734 735 8.948401 ACTCAGAGATGGACATAACATATACT 57.052 34.615 3.79 0.00 0.00 2.12
735 736 8.247562 GGACTCAGAGATGGACATAACATATAC 58.752 40.741 3.79 0.00 0.00 1.47
736 737 8.173412 AGGACTCAGAGATGGACATAACATATA 58.827 37.037 3.79 0.00 0.00 0.86
737 738 7.015680 AGGACTCAGAGATGGACATAACATAT 58.984 38.462 3.79 0.00 0.00 1.78
739 740 5.215069 AGGACTCAGAGATGGACATAACAT 58.785 41.667 3.79 0.00 0.00 2.71
740 741 4.614475 AGGACTCAGAGATGGACATAACA 58.386 43.478 3.79 0.00 0.00 2.41
741 742 4.261405 CGAGGACTCAGAGATGGACATAAC 60.261 50.000 3.79 0.00 0.00 1.89
742 743 3.885901 CGAGGACTCAGAGATGGACATAA 59.114 47.826 3.79 0.00 0.00 1.90
743 744 3.136626 TCGAGGACTCAGAGATGGACATA 59.863 47.826 3.79 0.00 0.00 2.29
744 745 2.092158 TCGAGGACTCAGAGATGGACAT 60.092 50.000 3.79 0.00 0.00 3.06
745 746 1.282157 TCGAGGACTCAGAGATGGACA 59.718 52.381 3.79 0.00 0.00 4.02
746 747 1.673920 GTCGAGGACTCAGAGATGGAC 59.326 57.143 3.79 3.30 0.00 4.02
747 748 1.562008 AGTCGAGGACTCAGAGATGGA 59.438 52.381 3.79 0.00 38.71 3.41
748 749 2.051334 AGTCGAGGACTCAGAGATGG 57.949 55.000 3.79 0.00 38.71 3.51
770 771 8.533569 TGAAAAGGTAATTTTGGATATCCTCC 57.466 34.615 22.35 12.22 41.24 4.30
779 2566 7.680827 GCCTTGGTTTTGAAAAGGTAATTTTGG 60.681 37.037 0.00 0.00 41.24 3.28
782 2569 5.825679 GGCCTTGGTTTTGAAAAGGTAATTT 59.174 36.000 0.00 0.00 42.13 1.82
792 2579 3.008485 AGTTGTTTGGCCTTGGTTTTGAA 59.992 39.130 3.32 0.00 0.00 2.69
826 2613 9.584008 AATGATAACTGGATATGCATCTTTCTT 57.416 29.630 0.19 0.00 0.00 2.52
841 2628 5.445939 CGAAGAAACGACCAATGATAACTGG 60.446 44.000 0.00 0.00 38.77 4.00
842 2629 5.347635 TCGAAGAAACGACCAATGATAACTG 59.652 40.000 0.00 0.00 37.37 3.16
844 2631 5.773239 TCGAAGAAACGACCAATGATAAC 57.227 39.130 0.00 0.00 37.37 1.89
854 2641 6.197468 CCTCATCTCTAATTCGAAGAAACGAC 59.803 42.308 3.35 0.00 45.90 4.34
875 2662 9.396022 GTAGTTTCTGAAATTGGATTATCCTCA 57.604 33.333 12.91 6.76 37.46 3.86
876 2663 9.620259 AGTAGTTTCTGAAATTGGATTATCCTC 57.380 33.333 12.91 2.19 37.46 3.71
881 2668 9.753674 ATGGAAGTAGTTTCTGAAATTGGATTA 57.246 29.630 6.06 0.00 36.03 1.75
892 2679 3.195661 GCCGGTATGGAAGTAGTTTCTG 58.804 50.000 1.90 0.00 42.00 3.02
914 2701 0.824759 GGAGAGATGTGGTAGCGGTT 59.175 55.000 0.00 0.00 0.00 4.44
933 2720 3.940209 TGGCATTCAAAGGCTACAAAG 57.060 42.857 0.00 0.00 35.75 2.77
1007 2794 9.612620 AAACACGAAGAAGAATATAAGCAAAAG 57.387 29.630 0.00 0.00 0.00 2.27
1035 2822 2.346803 GTTCTCCGATAGCTGCACAAA 58.653 47.619 1.02 0.00 0.00 2.83
1178 2965 1.210931 CATGCTTGGACTTGGCACG 59.789 57.895 0.00 0.00 38.83 5.34
1192 2979 1.945394 GGATCATCTGTGTGACCATGC 59.055 52.381 0.00 0.00 0.00 4.06
1243 3030 1.108776 AGGCACACATGATGAATGGC 58.891 50.000 15.50 15.50 40.94 4.40
1245 3032 4.398358 AGAAGAAGGCACACATGATGAATG 59.602 41.667 0.00 0.00 42.48 2.67
1250 3037 5.316167 TGTAAAGAAGAAGGCACACATGAT 58.684 37.500 0.00 0.00 0.00 2.45
1251 3038 4.713553 TGTAAAGAAGAAGGCACACATGA 58.286 39.130 0.00 0.00 0.00 3.07
1277 3064 4.174704 TCATGCAGCAGAGGGAAATTAT 57.825 40.909 0.00 0.00 0.00 1.28
1278 3065 3.650281 TCATGCAGCAGAGGGAAATTA 57.350 42.857 0.00 0.00 0.00 1.40
1284 3071 0.738975 CACAATCATGCAGCAGAGGG 59.261 55.000 0.00 0.00 0.00 4.30
1330 3117 3.665675 GAGATCGCCAACGCCAGGT 62.666 63.158 0.00 0.00 39.84 4.00
1333 3120 1.447838 GAAGAGATCGCCAACGCCA 60.448 57.895 0.00 0.00 39.84 5.69
1416 3203 2.629617 CAATTGAAGTCCAAGGCAAGGT 59.370 45.455 0.00 0.00 38.31 3.50
1433 3220 3.606687 GGTATCTTCGTGGTGTCCAATT 58.393 45.455 0.00 0.00 34.18 2.32
1553 3376 0.827089 CCAACACTGTCAATGCCCCA 60.827 55.000 0.00 0.00 0.00 4.96
1669 3496 1.255667 GCCACCTCTCCTTCCACGTA 61.256 60.000 0.00 0.00 0.00 3.57
1720 3547 4.127171 TCCGCAGCCTTATCTTTTATGAC 58.873 43.478 0.00 0.00 0.00 3.06
1725 3552 2.684881 CACATCCGCAGCCTTATCTTTT 59.315 45.455 0.00 0.00 0.00 2.27
1747 3574 2.413142 GGATGCACAGGCTCTTGGC 61.413 63.158 0.00 0.00 41.91 4.52
1789 3741 9.845214 AGGATATATAACACCCTTATCAGAAGT 57.155 33.333 0.00 0.00 0.00 3.01
1813 4187 1.577736 ATCCAGTGACAGAAGGGAGG 58.422 55.000 0.00 0.00 0.00 4.30
1905 4279 3.991773 CCGAACAAAATAACCACTCGAGA 59.008 43.478 21.68 0.00 0.00 4.04
1907 4281 3.992643 TCCGAACAAAATAACCACTCGA 58.007 40.909 0.00 0.00 0.00 4.04
1908 4282 4.735662 TTCCGAACAAAATAACCACTCG 57.264 40.909 0.00 0.00 0.00 4.18
1909 4283 6.128929 GCATTTTCCGAACAAAATAACCACTC 60.129 38.462 0.00 0.00 34.77 3.51
1910 4284 5.694458 GCATTTTCCGAACAAAATAACCACT 59.306 36.000 0.00 0.00 34.77 4.00
1911 4285 5.694458 AGCATTTTCCGAACAAAATAACCAC 59.306 36.000 0.00 0.00 34.77 4.16
1954 4336 9.313118 GTATGGTGAAAGTTTCTGTTGAATTTT 57.687 29.630 16.33 0.00 31.56 1.82
1964 4346 6.231211 CCTACACAGTATGGTGAAAGTTTCT 58.769 40.000 16.33 0.00 43.62 2.52
1966 4348 4.760204 GCCTACACAGTATGGTGAAAGTTT 59.240 41.667 0.00 0.00 43.62 2.66
1969 4351 4.207891 AGCCTACACAGTATGGTGAAAG 57.792 45.455 0.00 0.00 43.62 2.62
1974 4356 2.236395 GGTGAAGCCTACACAGTATGGT 59.764 50.000 0.00 0.00 43.62 3.55
1994 4376 1.864862 CTGTGCAAGTCTGAAGCGG 59.135 57.895 0.00 0.00 0.00 5.52
1995 4377 1.206072 GCTGTGCAAGTCTGAAGCG 59.794 57.895 0.00 0.00 0.00 4.68
1996 4378 0.237761 CTGCTGTGCAAGTCTGAAGC 59.762 55.000 0.00 0.00 38.41 3.86
1997 4379 0.873054 CCTGCTGTGCAAGTCTGAAG 59.127 55.000 0.00 0.00 38.41 3.02
1998 4380 0.181114 ACCTGCTGTGCAAGTCTGAA 59.819 50.000 0.00 0.00 38.41 3.02
1999 4381 1.047801 TACCTGCTGTGCAAGTCTGA 58.952 50.000 0.00 0.00 38.41 3.27
2000 4382 1.151668 GTACCTGCTGTGCAAGTCTG 58.848 55.000 0.00 0.00 38.41 3.51
2001 4383 1.001406 GAGTACCTGCTGTGCAAGTCT 59.999 52.381 0.00 0.00 38.41 3.24
2016 4398 3.345508 AATTTGGAACGGAGGGAGTAC 57.654 47.619 0.00 0.00 0.00 2.73
2017 4399 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
2018 4400 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
2019 4401 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
2020 4402 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
2021 4403 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2022 4404 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2023 4405 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2024 4406 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
2025 4407 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
2026 4408 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
2027 4409 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
2028 4410 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
2029 4411 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
2030 4412 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
2031 4413 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
2032 4414 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
2033 4415 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
2034 4416 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
2035 4417 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
2036 4418 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
2037 4419 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
2038 4420 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
2039 4421 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
2040 4422 7.096925 GGTTAAATTTGAACTAAAACCACGACG 60.097 37.037 10.54 0.00 29.64 5.12
2041 4423 7.701501 TGGTTAAATTTGAACTAAAACCACGAC 59.298 33.333 13.12 0.00 32.95 4.34
2042 4424 7.701501 GTGGTTAAATTTGAACTAAAACCACGA 59.298 33.333 23.82 3.78 42.21 4.35
2043 4425 7.833539 GTGGTTAAATTTGAACTAAAACCACG 58.166 34.615 23.82 0.00 42.21 4.94
2044 4426 7.701501 TCGTGGTTAAATTTGAACTAAAACCAC 59.298 33.333 26.14 26.14 44.97 4.16
2045 4427 7.701501 GTCGTGGTTAAATTTGAACTAAAACCA 59.298 33.333 13.12 13.12 34.60 3.67
2046 4428 7.096925 CGTCGTGGTTAAATTTGAACTAAAACC 60.097 37.037 0.00 5.46 0.00 3.27
2047 4429 7.639461 TCGTCGTGGTTAAATTTGAACTAAAAC 59.361 33.333 0.00 0.00 0.00 2.43
2048 4430 7.692088 TCGTCGTGGTTAAATTTGAACTAAAA 58.308 30.769 0.00 0.00 0.00 1.52
2049 4431 7.011295 ACTCGTCGTGGTTAAATTTGAACTAAA 59.989 33.333 0.00 0.00 0.00 1.85
2050 4432 6.479660 ACTCGTCGTGGTTAAATTTGAACTAA 59.520 34.615 0.00 0.00 0.00 2.24
2051 4433 5.984926 ACTCGTCGTGGTTAAATTTGAACTA 59.015 36.000 0.00 0.00 0.00 2.24
2052 4434 4.812626 ACTCGTCGTGGTTAAATTTGAACT 59.187 37.500 0.00 0.00 0.00 3.01
2053 4435 5.086888 ACTCGTCGTGGTTAAATTTGAAC 57.913 39.130 0.00 0.00 0.00 3.18
2054 4436 6.841443 TTACTCGTCGTGGTTAAATTTGAA 57.159 33.333 0.00 0.00 0.00 2.69
2055 4437 7.424227 AATTACTCGTCGTGGTTAAATTTGA 57.576 32.000 0.00 0.00 0.00 2.69
2056 4438 7.060174 CCAAATTACTCGTCGTGGTTAAATTTG 59.940 37.037 19.83 19.83 40.32 2.32
2057 4439 7.041235 TCCAAATTACTCGTCGTGGTTAAATTT 60.041 33.333 0.00 0.00 0.00 1.82
2058 4440 6.427547 TCCAAATTACTCGTCGTGGTTAAATT 59.572 34.615 0.00 0.00 0.00 1.82
2059 4441 5.933463 TCCAAATTACTCGTCGTGGTTAAAT 59.067 36.000 0.00 0.00 0.00 1.40
2060 4442 5.295950 TCCAAATTACTCGTCGTGGTTAAA 58.704 37.500 0.00 0.00 0.00 1.52
2061 4443 4.880759 TCCAAATTACTCGTCGTGGTTAA 58.119 39.130 0.00 0.00 0.00 2.01
2062 4444 4.517952 TCCAAATTACTCGTCGTGGTTA 57.482 40.909 0.00 0.00 0.00 2.85
2063 4445 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
2064 4446 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
2065 4447 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
2066 4448 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
2067 4449 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
2068 4450 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
2069 4451 3.841643 TCTCCGTTCCAAATTACTCGTC 58.158 45.455 0.00 0.00 0.00 4.20
2070 4452 3.508793 TCTCTCCGTTCCAAATTACTCGT 59.491 43.478 0.00 0.00 0.00 4.18
2071 4453 4.106029 TCTCTCCGTTCCAAATTACTCG 57.894 45.455 0.00 0.00 0.00 4.18
2072 4454 5.074584 ACTCTCTCCGTTCCAAATTACTC 57.925 43.478 0.00 0.00 0.00 2.59
2073 4455 5.715753 AGTACTCTCTCCGTTCCAAATTACT 59.284 40.000 0.00 0.00 0.00 2.24
2074 4456 5.963594 AGTACTCTCTCCGTTCCAAATTAC 58.036 41.667 0.00 0.00 0.00 1.89
2075 4457 6.600882 AAGTACTCTCTCCGTTCCAAATTA 57.399 37.500 0.00 0.00 0.00 1.40
2076 4458 5.485209 AAGTACTCTCTCCGTTCCAAATT 57.515 39.130 0.00 0.00 0.00 1.82
2077 4459 6.380274 TGATAAGTACTCTCTCCGTTCCAAAT 59.620 38.462 0.00 0.00 0.00 2.32
2078 4460 5.713389 TGATAAGTACTCTCTCCGTTCCAAA 59.287 40.000 0.00 0.00 0.00 3.28
2079 4461 5.258841 TGATAAGTACTCTCTCCGTTCCAA 58.741 41.667 0.00 0.00 0.00 3.53
2080 4462 4.851843 TGATAAGTACTCTCTCCGTTCCA 58.148 43.478 0.00 0.00 0.00 3.53
2081 4463 7.690952 ATATGATAAGTACTCTCTCCGTTCC 57.309 40.000 0.00 0.00 0.00 3.62
2082 4464 8.382130 CGTATATGATAAGTACTCTCTCCGTTC 58.618 40.741 0.00 0.00 0.00 3.95
2083 4465 7.877097 ACGTATATGATAAGTACTCTCTCCGTT 59.123 37.037 0.00 0.00 0.00 4.44
2084 4466 7.331440 CACGTATATGATAAGTACTCTCTCCGT 59.669 40.741 0.00 0.56 0.00 4.69
2085 4467 7.331440 ACACGTATATGATAAGTACTCTCTCCG 59.669 40.741 0.00 0.02 0.00 4.63
2086 4468 8.550710 ACACGTATATGATAAGTACTCTCTCC 57.449 38.462 0.00 0.00 0.00 3.71
2088 4470 9.138062 CGTACACGTATATGATAAGTACTCTCT 57.862 37.037 0.00 0.00 34.11 3.10
2462 5799 7.943079 AATGACTGTATGACAAATTGATGGA 57.057 32.000 0.00 0.00 0.00 3.41
2524 5891 2.954611 GGAAAGAGCACAACGCCC 59.045 61.111 0.00 0.00 44.04 6.13
2529 5896 2.606961 CGCTGCGGAAAGAGCACAA 61.607 57.895 15.40 0.00 40.01 3.33
2550 5917 4.767255 CCCTGGTCTGCTGGACGC 62.767 72.222 0.00 0.00 45.35 5.19
2563 5930 1.232119 GGAACACGTTTACCACCCTG 58.768 55.000 0.00 0.00 0.00 4.45
2943 6335 7.758076 TGTAAACTGTCGAACAGGTCTAATATG 59.242 37.037 16.04 0.00 44.04 1.78
2994 6389 4.628333 TCTTCGCCCTTATTTGTAGTTTCG 59.372 41.667 0.00 0.00 0.00 3.46
3219 6667 1.738365 CGACTGGCTCAAGATGGAGTG 60.738 57.143 0.00 0.00 37.24 3.51
3220 6668 0.534412 CGACTGGCTCAAGATGGAGT 59.466 55.000 0.00 0.00 37.24 3.85
3277 6725 2.035442 GTCAAGAACAGCGAGGGGC 61.035 63.158 0.00 0.00 44.05 5.80
3278 6726 1.738099 CGTCAAGAACAGCGAGGGG 60.738 63.158 0.00 0.00 0.00 4.79
3279 6727 2.383527 GCGTCAAGAACAGCGAGGG 61.384 63.158 0.00 0.00 0.00 4.30
3280 6728 2.383527 GGCGTCAAGAACAGCGAGG 61.384 63.158 0.00 0.00 0.00 4.63
3281 6729 2.720758 CGGCGTCAAGAACAGCGAG 61.721 63.158 0.00 0.00 0.00 5.03
3282 6730 2.733218 CGGCGTCAAGAACAGCGA 60.733 61.111 0.00 0.00 0.00 4.93
3283 6731 4.430423 GCGGCGTCAAGAACAGCG 62.430 66.667 9.37 0.00 0.00 5.18
3284 6732 4.090057 GGCGGCGTCAAGAACAGC 62.090 66.667 6.63 0.00 0.00 4.40
3285 6733 3.423154 GGGCGGCGTCAAGAACAG 61.423 66.667 15.59 0.00 0.00 3.16
3286 6734 4.243008 TGGGCGGCGTCAAGAACA 62.243 61.111 15.59 0.00 0.00 3.18
3287 6735 3.723348 GTGGGCGGCGTCAAGAAC 61.723 66.667 15.59 1.57 0.00 3.01
3313 6761 3.783362 TTGGCGTCCACCAACAGGG 62.783 63.158 0.00 0.00 44.80 4.45
3314 6762 2.203280 TTGGCGTCCACCAACAGG 60.203 61.111 0.00 0.00 44.80 4.00
3319 6767 2.847234 AGAGGTTGGCGTCCACCA 60.847 61.111 13.39 0.00 38.16 4.17
3320 6768 2.358737 CAGAGGTTGGCGTCCACC 60.359 66.667 1.12 1.12 30.78 4.61
3321 6769 3.050275 GCAGAGGTTGGCGTCCAC 61.050 66.667 0.00 0.00 30.78 4.02
3322 6770 3.240134 GAGCAGAGGTTGGCGTCCA 62.240 63.158 0.95 0.00 34.54 4.02
3323 6771 2.435059 GAGCAGAGGTTGGCGTCC 60.435 66.667 0.00 0.00 34.54 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.