Multiple sequence alignment - TraesCS5B01G214800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G214800 | chr5B | 100.000 | 2264 | 0 | 0 | 1 | 2264 | 387878132 | 387880395 | 0.000000e+00 | 4181 |
1 | TraesCS5B01G214800 | chr2B | 94.347 | 1645 | 79 | 7 | 302 | 1933 | 430232161 | 430230518 | 0.000000e+00 | 2510 |
2 | TraesCS5B01G214800 | chr2B | 93.670 | 1643 | 92 | 7 | 300 | 1933 | 215847468 | 215849107 | 0.000000e+00 | 2447 |
3 | TraesCS5B01G214800 | chr6D | 89.893 | 1969 | 157 | 25 | 300 | 2247 | 377212504 | 377214451 | 0.000000e+00 | 2495 |
4 | TraesCS5B01G214800 | chrUn | 92.905 | 1649 | 92 | 15 | 300 | 1932 | 10399472 | 10401111 | 0.000000e+00 | 2374 |
5 | TraesCS5B01G214800 | chr3D | 92.753 | 1642 | 98 | 10 | 300 | 1932 | 310406393 | 310408022 | 0.000000e+00 | 2353 |
6 | TraesCS5B01G214800 | chr3D | 91.793 | 1645 | 112 | 16 | 300 | 1932 | 446922723 | 446924356 | 0.000000e+00 | 2268 |
7 | TraesCS5B01G214800 | chr3D | 96.382 | 304 | 10 | 1 | 1 | 303 | 535813836 | 535813533 | 1.210000e-137 | 499 |
8 | TraesCS5B01G214800 | chr3D | 96.346 | 301 | 10 | 1 | 1 | 300 | 93228799 | 93229099 | 5.620000e-136 | 494 |
9 | TraesCS5B01G214800 | chr1D | 92.731 | 1637 | 107 | 8 | 300 | 1932 | 446419606 | 446421234 | 0.000000e+00 | 2353 |
10 | TraesCS5B01G214800 | chr1D | 79.480 | 346 | 61 | 6 | 1906 | 2246 | 14672928 | 14672588 | 1.050000e-58 | 237 |
11 | TraesCS5B01G214800 | chr4D | 92.005 | 1651 | 106 | 17 | 300 | 1932 | 470196339 | 470194697 | 0.000000e+00 | 2294 |
12 | TraesCS5B01G214800 | chr4D | 96.346 | 301 | 10 | 1 | 1 | 300 | 204895033 | 204894733 | 5.620000e-136 | 494 |
13 | TraesCS5B01G214800 | chr4D | 95.752 | 306 | 10 | 3 | 4 | 307 | 472459875 | 472459571 | 7.270000e-135 | 490 |
14 | TraesCS5B01G214800 | chr4D | 84.502 | 271 | 32 | 7 | 1984 | 2246 | 495818709 | 495818441 | 2.230000e-65 | 259 |
15 | TraesCS5B01G214800 | chr2D | 92.000 | 1650 | 108 | 16 | 300 | 1933 | 619853930 | 619855571 | 0.000000e+00 | 2294 |
16 | TraesCS5B01G214800 | chr2D | 93.896 | 1245 | 41 | 10 | 708 | 1932 | 632766843 | 632768072 | 0.000000e+00 | 1845 |
17 | TraesCS5B01G214800 | chr7D | 90.068 | 1168 | 51 | 13 | 745 | 1891 | 460800557 | 460801680 | 0.000000e+00 | 1454 |
18 | TraesCS5B01G214800 | chr7D | 96.678 | 301 | 9 | 1 | 1 | 300 | 36818064 | 36817764 | 1.210000e-137 | 499 |
19 | TraesCS5B01G214800 | chr7D | 96.066 | 305 | 11 | 1 | 1 | 304 | 273926492 | 273926188 | 1.560000e-136 | 496 |
20 | TraesCS5B01G214800 | chr7D | 80.716 | 363 | 64 | 4 | 1904 | 2260 | 610728507 | 610728145 | 6.160000e-71 | 278 |
21 | TraesCS5B01G214800 | chr7D | 83.942 | 274 | 36 | 7 | 1984 | 2254 | 131691681 | 131691413 | 2.890000e-64 | 255 |
22 | TraesCS5B01G214800 | chr4A | 96.370 | 303 | 10 | 1 | 1 | 302 | 352615326 | 352615024 | 4.340000e-137 | 497 |
23 | TraesCS5B01G214800 | chr4A | 83.836 | 365 | 45 | 8 | 1904 | 2264 | 564699127 | 564699481 | 3.600000e-88 | 335 |
24 | TraesCS5B01G214800 | chr5D | 96.346 | 301 | 10 | 1 | 1 | 300 | 206776546 | 206776846 | 5.620000e-136 | 494 |
25 | TraesCS5B01G214800 | chr4B | 96.346 | 301 | 10 | 1 | 1 | 300 | 131718278 | 131717978 | 5.620000e-136 | 494 |
26 | TraesCS5B01G214800 | chr4B | 85.479 | 365 | 45 | 7 | 1904 | 2264 | 467348094 | 467347734 | 7.640000e-100 | 374 |
27 | TraesCS5B01G214800 | chr3B | 85.205 | 365 | 48 | 4 | 1904 | 2264 | 103210715 | 103211077 | 9.880000e-99 | 370 |
28 | TraesCS5B01G214800 | chr3B | 83.883 | 273 | 36 | 7 | 1977 | 2245 | 103211064 | 103210796 | 1.040000e-63 | 254 |
29 | TraesCS5B01G214800 | chr6A | 78.674 | 347 | 64 | 6 | 1904 | 2245 | 466146403 | 466146744 | 2.930000e-54 | 222 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G214800 | chr5B | 387878132 | 387880395 | 2263 | False | 4181 | 4181 | 100.000 | 1 | 2264 | 1 | chr5B.!!$F1 | 2263 |
1 | TraesCS5B01G214800 | chr2B | 430230518 | 430232161 | 1643 | True | 2510 | 2510 | 94.347 | 302 | 1933 | 1 | chr2B.!!$R1 | 1631 |
2 | TraesCS5B01G214800 | chr2B | 215847468 | 215849107 | 1639 | False | 2447 | 2447 | 93.670 | 300 | 1933 | 1 | chr2B.!!$F1 | 1633 |
3 | TraesCS5B01G214800 | chr6D | 377212504 | 377214451 | 1947 | False | 2495 | 2495 | 89.893 | 300 | 2247 | 1 | chr6D.!!$F1 | 1947 |
4 | TraesCS5B01G214800 | chrUn | 10399472 | 10401111 | 1639 | False | 2374 | 2374 | 92.905 | 300 | 1932 | 1 | chrUn.!!$F1 | 1632 |
5 | TraesCS5B01G214800 | chr3D | 310406393 | 310408022 | 1629 | False | 2353 | 2353 | 92.753 | 300 | 1932 | 1 | chr3D.!!$F2 | 1632 |
6 | TraesCS5B01G214800 | chr3D | 446922723 | 446924356 | 1633 | False | 2268 | 2268 | 91.793 | 300 | 1932 | 1 | chr3D.!!$F3 | 1632 |
7 | TraesCS5B01G214800 | chr1D | 446419606 | 446421234 | 1628 | False | 2353 | 2353 | 92.731 | 300 | 1932 | 1 | chr1D.!!$F1 | 1632 |
8 | TraesCS5B01G214800 | chr4D | 470194697 | 470196339 | 1642 | True | 2294 | 2294 | 92.005 | 300 | 1932 | 1 | chr4D.!!$R2 | 1632 |
9 | TraesCS5B01G214800 | chr2D | 619853930 | 619855571 | 1641 | False | 2294 | 2294 | 92.000 | 300 | 1933 | 1 | chr2D.!!$F1 | 1633 |
10 | TraesCS5B01G214800 | chr2D | 632766843 | 632768072 | 1229 | False | 1845 | 1845 | 93.896 | 708 | 1932 | 1 | chr2D.!!$F2 | 1224 |
11 | TraesCS5B01G214800 | chr7D | 460800557 | 460801680 | 1123 | False | 1454 | 1454 | 90.068 | 745 | 1891 | 1 | chr7D.!!$F1 | 1146 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
44 | 45 | 0.035725 | TCGAAGCTCCCTGACGTCTA | 60.036 | 55.0 | 17.92 | 2.26 | 0.0 | 2.59 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1981 | 2079 | 0.400093 | AGGCTATGGTGGTAGGGTCC | 60.4 | 60.0 | 0.0 | 0.0 | 0.0 | 4.46 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
29 | 30 | 3.691342 | CCTCGTGGCCACCTCGAA | 61.691 | 66.667 | 29.95 | 9.58 | 46.34 | 3.71 |
30 | 31 | 2.125912 | CTCGTGGCCACCTCGAAG | 60.126 | 66.667 | 29.95 | 14.84 | 46.34 | 3.79 |
31 | 32 | 4.373116 | TCGTGGCCACCTCGAAGC | 62.373 | 66.667 | 29.95 | 2.63 | 44.63 | 3.86 |
32 | 33 | 4.379243 | CGTGGCCACCTCGAAGCT | 62.379 | 66.667 | 29.95 | 0.00 | 42.19 | 3.74 |
33 | 34 | 2.435059 | GTGGCCACCTCGAAGCTC | 60.435 | 66.667 | 26.31 | 0.00 | 0.00 | 4.09 |
34 | 35 | 3.706373 | TGGCCACCTCGAAGCTCC | 61.706 | 66.667 | 0.00 | 0.00 | 0.00 | 4.70 |
35 | 36 | 4.475135 | GGCCACCTCGAAGCTCCC | 62.475 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
36 | 37 | 3.394836 | GCCACCTCGAAGCTCCCT | 61.395 | 66.667 | 0.00 | 0.00 | 0.00 | 4.20 |
37 | 38 | 2.581354 | CCACCTCGAAGCTCCCTG | 59.419 | 66.667 | 0.00 | 0.00 | 0.00 | 4.45 |
38 | 39 | 1.984570 | CCACCTCGAAGCTCCCTGA | 60.985 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
39 | 40 | 1.216710 | CACCTCGAAGCTCCCTGAC | 59.783 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
40 | 41 | 2.344203 | ACCTCGAAGCTCCCTGACG | 61.344 | 63.158 | 0.00 | 0.00 | 0.00 | 4.35 |
41 | 42 | 2.344203 | CCTCGAAGCTCCCTGACGT | 61.344 | 63.158 | 0.00 | 0.00 | 0.00 | 4.34 |
42 | 43 | 1.137825 | CTCGAAGCTCCCTGACGTC | 59.862 | 63.158 | 9.11 | 9.11 | 0.00 | 4.34 |
43 | 44 | 1.303398 | TCGAAGCTCCCTGACGTCT | 60.303 | 57.895 | 17.92 | 0.00 | 0.00 | 4.18 |
44 | 45 | 0.035725 | TCGAAGCTCCCTGACGTCTA | 60.036 | 55.000 | 17.92 | 2.26 | 0.00 | 2.59 |
45 | 46 | 0.099082 | CGAAGCTCCCTGACGTCTAC | 59.901 | 60.000 | 17.92 | 0.00 | 0.00 | 2.59 |
46 | 47 | 1.465794 | GAAGCTCCCTGACGTCTACT | 58.534 | 55.000 | 17.92 | 2.17 | 0.00 | 2.57 |
47 | 48 | 1.402613 | GAAGCTCCCTGACGTCTACTC | 59.597 | 57.143 | 17.92 | 1.35 | 0.00 | 2.59 |
48 | 49 | 0.621609 | AGCTCCCTGACGTCTACTCT | 59.378 | 55.000 | 17.92 | 3.68 | 0.00 | 3.24 |
49 | 50 | 1.838715 | AGCTCCCTGACGTCTACTCTA | 59.161 | 52.381 | 17.92 | 0.00 | 0.00 | 2.43 |
50 | 51 | 2.239150 | AGCTCCCTGACGTCTACTCTAA | 59.761 | 50.000 | 17.92 | 0.00 | 0.00 | 2.10 |
51 | 52 | 2.614983 | GCTCCCTGACGTCTACTCTAAG | 59.385 | 54.545 | 17.92 | 3.40 | 0.00 | 2.18 |
52 | 53 | 3.876341 | CTCCCTGACGTCTACTCTAAGT | 58.124 | 50.000 | 17.92 | 0.00 | 0.00 | 2.24 |
53 | 54 | 3.871485 | TCCCTGACGTCTACTCTAAGTC | 58.129 | 50.000 | 17.92 | 0.00 | 0.00 | 3.01 |
54 | 55 | 3.518705 | TCCCTGACGTCTACTCTAAGTCT | 59.481 | 47.826 | 17.92 | 0.00 | 33.40 | 3.24 |
55 | 56 | 3.872771 | CCCTGACGTCTACTCTAAGTCTC | 59.127 | 52.174 | 17.92 | 0.00 | 33.40 | 3.36 |
56 | 57 | 3.872771 | CCTGACGTCTACTCTAAGTCTCC | 59.127 | 52.174 | 17.92 | 0.00 | 33.40 | 3.71 |
57 | 58 | 4.383335 | CCTGACGTCTACTCTAAGTCTCCT | 60.383 | 50.000 | 17.92 | 0.00 | 33.40 | 3.69 |
58 | 59 | 4.505808 | TGACGTCTACTCTAAGTCTCCTG | 58.494 | 47.826 | 17.92 | 0.00 | 33.40 | 3.86 |
59 | 60 | 3.872771 | GACGTCTACTCTAAGTCTCCTGG | 59.127 | 52.174 | 8.70 | 0.00 | 0.00 | 4.45 |
60 | 61 | 3.518705 | ACGTCTACTCTAAGTCTCCTGGA | 59.481 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
61 | 62 | 4.164604 | ACGTCTACTCTAAGTCTCCTGGAT | 59.835 | 45.833 | 0.00 | 0.00 | 0.00 | 3.41 |
62 | 63 | 5.127491 | CGTCTACTCTAAGTCTCCTGGATT | 58.873 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
63 | 64 | 5.008217 | CGTCTACTCTAAGTCTCCTGGATTG | 59.992 | 48.000 | 0.00 | 0.00 | 0.00 | 2.67 |
64 | 65 | 4.890581 | TCTACTCTAAGTCTCCTGGATTGC | 59.109 | 45.833 | 0.00 | 0.00 | 0.00 | 3.56 |
65 | 66 | 3.718723 | ACTCTAAGTCTCCTGGATTGCT | 58.281 | 45.455 | 0.00 | 0.00 | 0.00 | 3.91 |
66 | 67 | 4.100373 | ACTCTAAGTCTCCTGGATTGCTT | 58.900 | 43.478 | 0.00 | 4.95 | 0.00 | 3.91 |
67 | 68 | 4.161377 | ACTCTAAGTCTCCTGGATTGCTTC | 59.839 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
68 | 69 | 2.797177 | AAGTCTCCTGGATTGCTTCC | 57.203 | 50.000 | 0.00 | 0.00 | 45.69 | 3.46 |
78 | 79 | 3.378911 | GGATTGCTTCCGTTCCAAAAA | 57.621 | 42.857 | 0.00 | 0.00 | 33.93 | 1.94 |
79 | 80 | 3.925379 | GGATTGCTTCCGTTCCAAAAAT | 58.075 | 40.909 | 0.00 | 0.00 | 33.93 | 1.82 |
80 | 81 | 5.066968 | GGATTGCTTCCGTTCCAAAAATA | 57.933 | 39.130 | 0.00 | 0.00 | 33.93 | 1.40 |
81 | 82 | 5.474825 | GGATTGCTTCCGTTCCAAAAATAA | 58.525 | 37.500 | 0.00 | 0.00 | 33.93 | 1.40 |
82 | 83 | 5.347635 | GGATTGCTTCCGTTCCAAAAATAAC | 59.652 | 40.000 | 0.00 | 0.00 | 33.93 | 1.89 |
83 | 84 | 5.523438 | TTGCTTCCGTTCCAAAAATAACT | 57.477 | 34.783 | 0.00 | 0.00 | 0.00 | 2.24 |
84 | 85 | 5.116069 | TGCTTCCGTTCCAAAAATAACTC | 57.884 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
85 | 86 | 4.825085 | TGCTTCCGTTCCAAAAATAACTCT | 59.175 | 37.500 | 0.00 | 0.00 | 0.00 | 3.24 |
86 | 87 | 5.048991 | TGCTTCCGTTCCAAAAATAACTCTC | 60.049 | 40.000 | 0.00 | 0.00 | 0.00 | 3.20 |
87 | 88 | 5.181433 | GCTTCCGTTCCAAAAATAACTCTCT | 59.819 | 40.000 | 0.00 | 0.00 | 0.00 | 3.10 |
88 | 89 | 6.620949 | GCTTCCGTTCCAAAAATAACTCTCTC | 60.621 | 42.308 | 0.00 | 0.00 | 0.00 | 3.20 |
89 | 90 | 4.927425 | TCCGTTCCAAAAATAACTCTCTCG | 59.073 | 41.667 | 0.00 | 0.00 | 0.00 | 4.04 |
90 | 91 | 4.927425 | CCGTTCCAAAAATAACTCTCTCGA | 59.073 | 41.667 | 0.00 | 0.00 | 0.00 | 4.04 |
91 | 92 | 5.407387 | CCGTTCCAAAAATAACTCTCTCGAA | 59.593 | 40.000 | 0.00 | 0.00 | 0.00 | 3.71 |
92 | 93 | 6.401153 | CCGTTCCAAAAATAACTCTCTCGAAG | 60.401 | 42.308 | 0.00 | 0.00 | 0.00 | 3.79 |
93 | 94 | 6.401153 | CGTTCCAAAAATAACTCTCTCGAAGG | 60.401 | 42.308 | 0.00 | 0.00 | 0.00 | 3.46 |
94 | 95 | 6.110411 | TCCAAAAATAACTCTCTCGAAGGT | 57.890 | 37.500 | 0.00 | 0.00 | 0.00 | 3.50 |
95 | 96 | 6.531021 | TCCAAAAATAACTCTCTCGAAGGTT | 58.469 | 36.000 | 0.00 | 0.00 | 0.00 | 3.50 |
96 | 97 | 6.996282 | TCCAAAAATAACTCTCTCGAAGGTTT | 59.004 | 34.615 | 0.00 | 0.00 | 0.00 | 3.27 |
97 | 98 | 7.172703 | TCCAAAAATAACTCTCTCGAAGGTTTC | 59.827 | 37.037 | 0.00 | 0.00 | 0.00 | 2.78 |
98 | 99 | 7.041372 | CCAAAAATAACTCTCTCGAAGGTTTCA | 60.041 | 37.037 | 0.00 | 0.00 | 0.00 | 2.69 |
99 | 100 | 8.507249 | CAAAAATAACTCTCTCGAAGGTTTCAT | 58.493 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
100 | 101 | 8.622948 | AAAATAACTCTCTCGAAGGTTTCATT | 57.377 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
101 | 102 | 7.835634 | AATAACTCTCTCGAAGGTTTCATTC | 57.164 | 36.000 | 0.00 | 0.00 | 0.00 | 2.67 |
102 | 103 | 4.195225 | ACTCTCTCGAAGGTTTCATTCC | 57.805 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
103 | 104 | 3.182967 | CTCTCTCGAAGGTTTCATTCCG | 58.817 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
104 | 105 | 2.561419 | TCTCTCGAAGGTTTCATTCCGT | 59.439 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
105 | 106 | 3.006537 | TCTCTCGAAGGTTTCATTCCGTT | 59.993 | 43.478 | 0.00 | 0.00 | 0.00 | 4.44 |
106 | 107 | 3.735591 | TCTCGAAGGTTTCATTCCGTTT | 58.264 | 40.909 | 0.00 | 0.00 | 0.00 | 3.60 |
107 | 108 | 3.496884 | TCTCGAAGGTTTCATTCCGTTTG | 59.503 | 43.478 | 0.00 | 0.00 | 0.00 | 2.93 |
108 | 109 | 2.550606 | TCGAAGGTTTCATTCCGTTTGG | 59.449 | 45.455 | 0.00 | 0.00 | 0.00 | 3.28 |
109 | 110 | 2.550606 | CGAAGGTTTCATTCCGTTTGGA | 59.449 | 45.455 | 0.00 | 0.00 | 44.61 | 3.53 |
110 | 111 | 3.608474 | CGAAGGTTTCATTCCGTTTGGAC | 60.608 | 47.826 | 0.00 | 0.00 | 46.45 | 4.02 |
111 | 112 | 3.223674 | AGGTTTCATTCCGTTTGGACT | 57.776 | 42.857 | 0.00 | 0.00 | 46.45 | 3.85 |
112 | 113 | 3.146847 | AGGTTTCATTCCGTTTGGACTC | 58.853 | 45.455 | 0.00 | 0.00 | 46.45 | 3.36 |
113 | 114 | 2.228103 | GGTTTCATTCCGTTTGGACTCC | 59.772 | 50.000 | 0.00 | 0.00 | 46.45 | 3.85 |
114 | 115 | 1.803334 | TTCATTCCGTTTGGACTCCG | 58.197 | 50.000 | 0.00 | 0.00 | 46.45 | 4.63 |
115 | 116 | 0.682852 | TCATTCCGTTTGGACTCCGT | 59.317 | 50.000 | 0.00 | 0.00 | 46.45 | 4.69 |
116 | 117 | 1.071071 | TCATTCCGTTTGGACTCCGTT | 59.929 | 47.619 | 0.00 | 0.00 | 46.45 | 4.44 |
117 | 118 | 1.877443 | CATTCCGTTTGGACTCCGTTT | 59.123 | 47.619 | 0.00 | 0.00 | 46.45 | 3.60 |
118 | 119 | 1.301423 | TTCCGTTTGGACTCCGTTTG | 58.699 | 50.000 | 0.00 | 0.00 | 46.45 | 2.93 |
119 | 120 | 0.464870 | TCCGTTTGGACTCCGTTTGA | 59.535 | 50.000 | 0.00 | 0.00 | 40.17 | 2.69 |
120 | 121 | 1.071071 | TCCGTTTGGACTCCGTTTGAT | 59.929 | 47.619 | 0.00 | 0.00 | 40.17 | 2.57 |
121 | 122 | 2.299582 | TCCGTTTGGACTCCGTTTGATA | 59.700 | 45.455 | 0.00 | 0.00 | 40.17 | 2.15 |
122 | 123 | 3.055675 | TCCGTTTGGACTCCGTTTGATAT | 60.056 | 43.478 | 0.00 | 0.00 | 40.17 | 1.63 |
123 | 124 | 3.687698 | CCGTTTGGACTCCGTTTGATATT | 59.312 | 43.478 | 0.00 | 0.00 | 37.49 | 1.28 |
124 | 125 | 4.201783 | CCGTTTGGACTCCGTTTGATATTC | 60.202 | 45.833 | 0.00 | 0.00 | 37.49 | 1.75 |
125 | 126 | 4.201783 | CGTTTGGACTCCGTTTGATATTCC | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
126 | 127 | 4.837093 | TTGGACTCCGTTTGATATTCCT | 57.163 | 40.909 | 0.00 | 0.00 | 0.00 | 3.36 |
127 | 128 | 4.837093 | TGGACTCCGTTTGATATTCCTT | 57.163 | 40.909 | 0.00 | 0.00 | 0.00 | 3.36 |
128 | 129 | 5.174037 | TGGACTCCGTTTGATATTCCTTT | 57.826 | 39.130 | 0.00 | 0.00 | 0.00 | 3.11 |
129 | 130 | 5.566469 | TGGACTCCGTTTGATATTCCTTTT | 58.434 | 37.500 | 0.00 | 0.00 | 0.00 | 2.27 |
130 | 131 | 5.646360 | TGGACTCCGTTTGATATTCCTTTTC | 59.354 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
131 | 132 | 5.880887 | GGACTCCGTTTGATATTCCTTTTCT | 59.119 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
132 | 133 | 6.374613 | GGACTCCGTTTGATATTCCTTTTCTT | 59.625 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
133 | 134 | 7.379098 | ACTCCGTTTGATATTCCTTTTCTTC | 57.621 | 36.000 | 0.00 | 0.00 | 0.00 | 2.87 |
134 | 135 | 6.092259 | ACTCCGTTTGATATTCCTTTTCTTCG | 59.908 | 38.462 | 0.00 | 0.00 | 0.00 | 3.79 |
135 | 136 | 6.167685 | TCCGTTTGATATTCCTTTTCTTCGA | 58.832 | 36.000 | 0.00 | 0.00 | 0.00 | 3.71 |
136 | 137 | 6.651643 | TCCGTTTGATATTCCTTTTCTTCGAA | 59.348 | 34.615 | 0.00 | 0.00 | 0.00 | 3.71 |
137 | 138 | 7.173562 | TCCGTTTGATATTCCTTTTCTTCGAAA | 59.826 | 33.333 | 0.00 | 0.00 | 0.00 | 3.46 |
138 | 139 | 7.270579 | CCGTTTGATATTCCTTTTCTTCGAAAC | 59.729 | 37.037 | 0.00 | 0.00 | 0.00 | 2.78 |
139 | 140 | 7.801315 | CGTTTGATATTCCTTTTCTTCGAAACA | 59.199 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
140 | 141 | 8.902735 | GTTTGATATTCCTTTTCTTCGAAACAC | 58.097 | 33.333 | 0.00 | 0.00 | 0.00 | 3.32 |
141 | 142 | 7.979444 | TGATATTCCTTTTCTTCGAAACACT | 57.021 | 32.000 | 0.00 | 0.00 | 0.00 | 3.55 |
142 | 143 | 7.806690 | TGATATTCCTTTTCTTCGAAACACTG | 58.193 | 34.615 | 0.00 | 0.00 | 0.00 | 3.66 |
143 | 144 | 7.659799 | TGATATTCCTTTTCTTCGAAACACTGA | 59.340 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
144 | 145 | 6.693315 | ATTCCTTTTCTTCGAAACACTGAA | 57.307 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
145 | 146 | 6.503589 | TTCCTTTTCTTCGAAACACTGAAA | 57.496 | 33.333 | 0.00 | 2.34 | 0.00 | 2.69 |
146 | 147 | 6.693315 | TCCTTTTCTTCGAAACACTGAAAT | 57.307 | 33.333 | 9.49 | 0.00 | 0.00 | 2.17 |
147 | 148 | 7.795482 | TCCTTTTCTTCGAAACACTGAAATA | 57.205 | 32.000 | 9.49 | 2.77 | 0.00 | 1.40 |
148 | 149 | 7.861630 | TCCTTTTCTTCGAAACACTGAAATAG | 58.138 | 34.615 | 9.49 | 9.48 | 0.00 | 1.73 |
149 | 150 | 7.041372 | TCCTTTTCTTCGAAACACTGAAATAGG | 60.041 | 37.037 | 18.83 | 18.83 | 32.66 | 2.57 |
150 | 151 | 5.607119 | TTCTTCGAAACACTGAAATAGGC | 57.393 | 39.130 | 0.00 | 0.00 | 0.00 | 3.93 |
151 | 152 | 4.637276 | TCTTCGAAACACTGAAATAGGCA | 58.363 | 39.130 | 0.00 | 0.00 | 0.00 | 4.75 |
152 | 153 | 5.060506 | TCTTCGAAACACTGAAATAGGCAA | 58.939 | 37.500 | 0.00 | 0.00 | 0.00 | 4.52 |
153 | 154 | 5.179368 | TCTTCGAAACACTGAAATAGGCAAG | 59.821 | 40.000 | 0.00 | 0.00 | 0.00 | 4.01 |
154 | 155 | 4.637276 | TCGAAACACTGAAATAGGCAAGA | 58.363 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
155 | 156 | 5.060506 | TCGAAACACTGAAATAGGCAAGAA | 58.939 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
156 | 157 | 5.529430 | TCGAAACACTGAAATAGGCAAGAAA | 59.471 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
157 | 158 | 6.038825 | TCGAAACACTGAAATAGGCAAGAAAA | 59.961 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
158 | 159 | 6.142320 | CGAAACACTGAAATAGGCAAGAAAAC | 59.858 | 38.462 | 0.00 | 0.00 | 0.00 | 2.43 |
159 | 160 | 6.463995 | AACACTGAAATAGGCAAGAAAACA | 57.536 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
160 | 161 | 6.463995 | ACACTGAAATAGGCAAGAAAACAA | 57.536 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
161 | 162 | 6.273071 | ACACTGAAATAGGCAAGAAAACAAC | 58.727 | 36.000 | 0.00 | 0.00 | 0.00 | 3.32 |
162 | 163 | 6.127479 | ACACTGAAATAGGCAAGAAAACAACA | 60.127 | 34.615 | 0.00 | 0.00 | 0.00 | 3.33 |
163 | 164 | 6.756074 | CACTGAAATAGGCAAGAAAACAACAA | 59.244 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
164 | 165 | 7.439056 | CACTGAAATAGGCAAGAAAACAACAAT | 59.561 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
165 | 166 | 7.986889 | ACTGAAATAGGCAAGAAAACAACAATT | 59.013 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
166 | 167 | 8.729805 | TGAAATAGGCAAGAAAACAACAATTT | 57.270 | 26.923 | 0.00 | 0.00 | 0.00 | 1.82 |
167 | 168 | 8.610896 | TGAAATAGGCAAGAAAACAACAATTTG | 58.389 | 29.630 | 0.00 | 0.00 | 38.83 | 2.32 |
168 | 169 | 7.495135 | AATAGGCAAGAAAACAACAATTTGG | 57.505 | 32.000 | 0.78 | 0.00 | 37.00 | 3.28 |
169 | 170 | 4.198530 | AGGCAAGAAAACAACAATTTGGG | 58.801 | 39.130 | 0.78 | 0.00 | 37.00 | 4.12 |
170 | 171 | 3.944650 | GGCAAGAAAACAACAATTTGGGT | 59.055 | 39.130 | 0.78 | 0.00 | 37.00 | 4.51 |
171 | 172 | 4.397730 | GGCAAGAAAACAACAATTTGGGTT | 59.602 | 37.500 | 0.78 | 2.48 | 37.00 | 4.11 |
176 | 177 | 3.320823 | CAACAATTTGGGTTGGGCC | 57.679 | 52.632 | 0.00 | 0.00 | 41.41 | 5.80 |
177 | 178 | 0.764271 | CAACAATTTGGGTTGGGCCT | 59.236 | 50.000 | 4.53 | 0.00 | 41.41 | 5.19 |
178 | 179 | 1.055849 | AACAATTTGGGTTGGGCCTC | 58.944 | 50.000 | 4.53 | 0.00 | 37.43 | 4.70 |
179 | 180 | 0.835971 | ACAATTTGGGTTGGGCCTCC | 60.836 | 55.000 | 4.53 | 7.48 | 37.43 | 4.30 |
180 | 181 | 1.609210 | AATTTGGGTTGGGCCTCCG | 60.609 | 57.895 | 4.53 | 0.00 | 37.43 | 4.63 |
181 | 182 | 3.600410 | ATTTGGGTTGGGCCTCCGG | 62.600 | 63.158 | 4.53 | 0.00 | 37.43 | 5.14 |
184 | 185 | 3.332385 | GGGTTGGGCCTCCGGTTA | 61.332 | 66.667 | 4.53 | 0.00 | 37.43 | 2.85 |
185 | 186 | 2.758434 | GGTTGGGCCTCCGGTTAA | 59.242 | 61.111 | 4.53 | 0.00 | 35.24 | 2.01 |
186 | 187 | 1.305287 | GGTTGGGCCTCCGGTTAAT | 59.695 | 57.895 | 4.53 | 0.00 | 35.24 | 1.40 |
187 | 188 | 0.547553 | GGTTGGGCCTCCGGTTAATA | 59.452 | 55.000 | 4.53 | 0.00 | 35.24 | 0.98 |
188 | 189 | 1.476291 | GGTTGGGCCTCCGGTTAATAG | 60.476 | 57.143 | 4.53 | 0.00 | 35.24 | 1.73 |
189 | 190 | 0.841289 | TTGGGCCTCCGGTTAATAGG | 59.159 | 55.000 | 4.53 | 0.51 | 35.24 | 2.57 |
190 | 191 | 0.326808 | TGGGCCTCCGGTTAATAGGT | 60.327 | 55.000 | 4.53 | 0.00 | 35.24 | 3.08 |
191 | 192 | 0.841961 | GGGCCTCCGGTTAATAGGTT | 59.158 | 55.000 | 0.84 | 0.00 | 32.67 | 3.50 |
192 | 193 | 2.049372 | GGGCCTCCGGTTAATAGGTTA | 58.951 | 52.381 | 0.84 | 0.00 | 32.67 | 2.85 |
193 | 194 | 2.038164 | GGGCCTCCGGTTAATAGGTTAG | 59.962 | 54.545 | 0.84 | 0.00 | 32.67 | 2.34 |
194 | 195 | 2.702478 | GGCCTCCGGTTAATAGGTTAGT | 59.298 | 50.000 | 0.00 | 0.00 | 32.67 | 2.24 |
195 | 196 | 3.244009 | GGCCTCCGGTTAATAGGTTAGTC | 60.244 | 52.174 | 0.00 | 0.00 | 32.67 | 2.59 |
196 | 197 | 3.244009 | GCCTCCGGTTAATAGGTTAGTCC | 60.244 | 52.174 | 0.00 | 0.00 | 32.67 | 3.85 |
197 | 198 | 3.323115 | CCTCCGGTTAATAGGTTAGTCCC | 59.677 | 52.174 | 0.00 | 0.00 | 36.75 | 4.46 |
198 | 199 | 3.962718 | CTCCGGTTAATAGGTTAGTCCCA | 59.037 | 47.826 | 0.00 | 0.00 | 36.75 | 4.37 |
199 | 200 | 4.360889 | TCCGGTTAATAGGTTAGTCCCAA | 58.639 | 43.478 | 0.00 | 0.00 | 36.75 | 4.12 |
200 | 201 | 4.782156 | TCCGGTTAATAGGTTAGTCCCAAA | 59.218 | 41.667 | 0.00 | 0.00 | 36.75 | 3.28 |
201 | 202 | 5.250313 | TCCGGTTAATAGGTTAGTCCCAAAA | 59.750 | 40.000 | 0.00 | 0.00 | 36.75 | 2.44 |
202 | 203 | 5.945191 | CCGGTTAATAGGTTAGTCCCAAAAA | 59.055 | 40.000 | 0.00 | 0.00 | 36.75 | 1.94 |
203 | 204 | 6.604396 | CCGGTTAATAGGTTAGTCCCAAAAAT | 59.396 | 38.462 | 0.00 | 0.00 | 36.75 | 1.82 |
204 | 205 | 7.415877 | CCGGTTAATAGGTTAGTCCCAAAAATG | 60.416 | 40.741 | 0.00 | 0.00 | 36.75 | 2.32 |
205 | 206 | 7.337436 | CGGTTAATAGGTTAGTCCCAAAAATGA | 59.663 | 37.037 | 0.00 | 0.00 | 36.75 | 2.57 |
206 | 207 | 9.197306 | GGTTAATAGGTTAGTCCCAAAAATGAT | 57.803 | 33.333 | 0.00 | 0.00 | 36.75 | 2.45 |
229 | 230 | 9.742144 | TGATATAAAAGTGTAAAGTAAAGCCCA | 57.258 | 29.630 | 0.00 | 0.00 | 0.00 | 5.36 |
235 | 236 | 7.826918 | AAGTGTAAAGTAAAGCCCATAAACA | 57.173 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
236 | 237 | 8.417273 | AAGTGTAAAGTAAAGCCCATAAACAT | 57.583 | 30.769 | 0.00 | 0.00 | 0.00 | 2.71 |
237 | 238 | 8.051901 | AGTGTAAAGTAAAGCCCATAAACATC | 57.948 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
238 | 239 | 7.122204 | AGTGTAAAGTAAAGCCCATAAACATCC | 59.878 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
239 | 240 | 6.948886 | TGTAAAGTAAAGCCCATAAACATCCA | 59.051 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
240 | 241 | 6.926630 | AAAGTAAAGCCCATAAACATCCAA | 57.073 | 33.333 | 0.00 | 0.00 | 0.00 | 3.53 |
241 | 242 | 6.926630 | AAGTAAAGCCCATAAACATCCAAA | 57.073 | 33.333 | 0.00 | 0.00 | 0.00 | 3.28 |
242 | 243 | 6.926630 | AGTAAAGCCCATAAACATCCAAAA | 57.073 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
243 | 244 | 6.697395 | AGTAAAGCCCATAAACATCCAAAAC | 58.303 | 36.000 | 0.00 | 0.00 | 0.00 | 2.43 |
244 | 245 | 5.559148 | AAAGCCCATAAACATCCAAAACA | 57.441 | 34.783 | 0.00 | 0.00 | 0.00 | 2.83 |
245 | 246 | 5.559148 | AAGCCCATAAACATCCAAAACAA | 57.441 | 34.783 | 0.00 | 0.00 | 0.00 | 2.83 |
246 | 247 | 5.151297 | AGCCCATAAACATCCAAAACAAG | 57.849 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
247 | 248 | 4.592778 | AGCCCATAAACATCCAAAACAAGT | 59.407 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
248 | 249 | 5.777732 | AGCCCATAAACATCCAAAACAAGTA | 59.222 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
249 | 250 | 6.268847 | AGCCCATAAACATCCAAAACAAGTAA | 59.731 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
250 | 251 | 7.038373 | AGCCCATAAACATCCAAAACAAGTAAT | 60.038 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
251 | 252 | 8.254508 | GCCCATAAACATCCAAAACAAGTAATA | 58.745 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
397 | 398 | 1.287815 | GTGGGCGCCTTGGTTTAAC | 59.712 | 57.895 | 28.56 | 6.48 | 0.00 | 2.01 |
403 | 404 | 1.887854 | GCGCCTTGGTTTAACCCTTTA | 59.112 | 47.619 | 12.02 | 0.00 | 37.50 | 1.85 |
490 | 491 | 2.486370 | GCCTATGAGGGGAAGAAGAAGC | 60.486 | 54.545 | 0.00 | 0.00 | 35.37 | 3.86 |
808 | 844 | 1.307084 | GACTAGCCTTGGAGGGGGT | 60.307 | 63.158 | 0.00 | 0.00 | 35.37 | 4.95 |
899 | 935 | 6.206634 | GCTCAATCCGGATGGTTGAAATAATA | 59.793 | 38.462 | 19.95 | 0.00 | 35.94 | 0.98 |
1087 | 1130 | 1.347707 | AGGACGCATCTTTGGACAAGA | 59.652 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
1336 | 1379 | 2.685380 | CAGTCCCCGCCTCCTCTT | 60.685 | 66.667 | 0.00 | 0.00 | 0.00 | 2.85 |
1397 | 1440 | 7.797121 | AAAGATGTCCAAAAGGACCAATATT | 57.203 | 32.000 | 11.79 | 1.48 | 38.04 | 1.28 |
1463 | 1506 | 1.003233 | GGCTTGGAGGAAGAGCGTT | 60.003 | 57.895 | 0.00 | 0.00 | 37.29 | 4.84 |
1613 | 1657 | 2.814097 | CGTGACAAGAAGGGGAAATGGT | 60.814 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
1767 | 1815 | 5.876612 | TTGCCATTTGTATTGAATTTGGC | 57.123 | 34.783 | 5.27 | 5.27 | 40.05 | 4.52 |
1846 | 1894 | 5.978919 | TGATTTGTCTGCAATTTCTGTGAAC | 59.021 | 36.000 | 0.00 | 0.00 | 34.18 | 3.18 |
1891 | 1981 | 7.040686 | GGCAGAACAAAGGATTACTCTGTTTTA | 60.041 | 37.037 | 0.00 | 0.00 | 32.71 | 1.52 |
1902 | 1992 | 9.880064 | GGATTACTCTGTTTTACTCTGTTTTTC | 57.120 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
1953 | 2051 | 1.202313 | GGGCTAAGCTACTGTGACGAG | 60.202 | 57.143 | 0.00 | 0.00 | 0.00 | 4.18 |
1954 | 2052 | 1.743958 | GGCTAAGCTACTGTGACGAGA | 59.256 | 52.381 | 0.00 | 0.00 | 0.00 | 4.04 |
1958 | 2056 | 4.684703 | GCTAAGCTACTGTGACGAGAAAAA | 59.315 | 41.667 | 0.00 | 0.00 | 0.00 | 1.94 |
1962 | 2060 | 4.508124 | AGCTACTGTGACGAGAAAAACAAG | 59.492 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
1963 | 2061 | 4.506654 | GCTACTGTGACGAGAAAAACAAGA | 59.493 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
1964 | 2062 | 5.006358 | GCTACTGTGACGAGAAAAACAAGAA | 59.994 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1966 | 2064 | 4.094442 | ACTGTGACGAGAAAAACAAGAACC | 59.906 | 41.667 | 0.00 | 0.00 | 0.00 | 3.62 |
1998 | 2096 | 2.143129 | GGGACCCTACCACCATAGC | 58.857 | 63.158 | 2.09 | 0.00 | 0.00 | 2.97 |
2000 | 2098 | 0.400093 | GGACCCTACCACCATAGCCT | 60.400 | 60.000 | 0.00 | 0.00 | 0.00 | 4.58 |
2016 | 2114 | 2.662596 | CTCTGGCGGTAGGTTGCA | 59.337 | 61.111 | 0.00 | 0.00 | 0.00 | 4.08 |
2020 | 2118 | 2.257409 | CTGGCGGTAGGTTGCAGGAT | 62.257 | 60.000 | 0.00 | 0.00 | 0.00 | 3.24 |
2032 | 2130 | 3.142393 | CAGGATCCTACCGCCAGG | 58.858 | 66.667 | 15.67 | 0.00 | 45.13 | 4.45 |
2033 | 2131 | 2.122813 | AGGATCCTACCGCCAGGG | 60.123 | 66.667 | 14.27 | 0.00 | 43.47 | 4.45 |
2034 | 2132 | 2.122989 | GGATCCTACCGCCAGGGA | 60.123 | 66.667 | 3.84 | 0.00 | 43.47 | 4.20 |
2067 | 2165 | 2.959465 | GGGGGCTAAGCTATTGTGAT | 57.041 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2069 | 2167 | 2.106511 | GGGGGCTAAGCTATTGTGATGA | 59.893 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 |
2070 | 2168 | 3.406764 | GGGGCTAAGCTATTGTGATGAG | 58.593 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2074 | 2172 | 5.590259 | GGGCTAAGCTATTGTGATGAGAAAA | 59.410 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2076 | 2174 | 7.201857 | GGGCTAAGCTATTGTGATGAGAAAAAT | 60.202 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
2077 | 2175 | 7.646922 | GGCTAAGCTATTGTGATGAGAAAAATG | 59.353 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
2080 | 2178 | 7.934855 | AGCTATTGTGATGAGAAAAATGAGT | 57.065 | 32.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2100 | 2198 | 4.368003 | CCTGGCGGTAGGGTAAGA | 57.632 | 61.111 | 0.00 | 0.00 | 34.06 | 2.10 |
2101 | 2199 | 2.599216 | CCTGGCGGTAGGGTAAGAA | 58.401 | 57.895 | 0.00 | 0.00 | 34.06 | 2.52 |
2102 | 2200 | 0.464452 | CCTGGCGGTAGGGTAAGAAG | 59.536 | 60.000 | 0.00 | 0.00 | 34.06 | 2.85 |
2113 | 2211 | 0.251073 | GGTAAGAAGCCTACCGCCAA | 59.749 | 55.000 | 0.00 | 0.00 | 38.78 | 4.52 |
2114 | 2212 | 1.339342 | GGTAAGAAGCCTACCGCCAAA | 60.339 | 52.381 | 0.00 | 0.00 | 38.78 | 3.28 |
2115 | 2213 | 2.640184 | GTAAGAAGCCTACCGCCAAAT | 58.360 | 47.619 | 0.00 | 0.00 | 38.78 | 2.32 |
2119 | 2217 | 1.315257 | AAGCCTACCGCCAAATGCTG | 61.315 | 55.000 | 0.00 | 0.00 | 38.78 | 4.41 |
2132 | 2230 | 2.536997 | AATGCTGTGGCGGTAGGGTC | 62.537 | 60.000 | 0.00 | 0.00 | 42.25 | 4.46 |
2133 | 2231 | 3.702048 | GCTGTGGCGGTAGGGTCA | 61.702 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
2162 | 2260 | 1.112916 | CCAGGGTGCCCGTTTTTCTT | 61.113 | 55.000 | 0.98 | 0.00 | 41.95 | 2.52 |
2165 | 2263 | 0.031585 | GGGTGCCCGTTTTTCTTGTC | 59.968 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2167 | 2265 | 1.535226 | GGTGCCCGTTTTTCTTGTCAC | 60.535 | 52.381 | 0.00 | 0.00 | 0.00 | 3.67 |
2175 | 2273 | 5.028375 | CCGTTTTTCTTGTCACAGAAACTC | 58.972 | 41.667 | 8.71 | 5.88 | 41.52 | 3.01 |
2205 | 2305 | 2.505982 | CATGGTCCCTGGCGGTAG | 59.494 | 66.667 | 0.00 | 0.00 | 0.00 | 3.18 |
2207 | 2307 | 3.326385 | ATGGTCCCTGGCGGTAGGA | 62.326 | 63.158 | 2.18 | 0.00 | 40.42 | 2.94 |
2211 | 2311 | 2.122813 | CCCTGGCGGTAGGATCCT | 60.123 | 66.667 | 20.48 | 20.48 | 40.42 | 3.24 |
2215 | 2315 | 1.971505 | CTGGCGGTAGGATCCTGCAA | 61.972 | 60.000 | 28.38 | 14.80 | 0.00 | 4.08 |
2226 | 2326 | 2.257409 | ATCCTGCAACCTACCGCCAG | 62.257 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2227 | 2327 | 2.662596 | CTGCAACCTACCGCCAGA | 59.337 | 61.111 | 0.00 | 0.00 | 0.00 | 3.86 |
2229 | 2329 | 2.125106 | GCAACCTACCGCCAGAGG | 60.125 | 66.667 | 0.00 | 0.00 | 38.92 | 3.69 |
2247 | 2347 | 2.038837 | GCTGTGGCGGTAGGGTTTC | 61.039 | 63.158 | 0.00 | 0.00 | 0.00 | 2.78 |
2248 | 2348 | 1.373435 | CTGTGGCGGTAGGGTTTCA | 59.627 | 57.895 | 0.00 | 0.00 | 0.00 | 2.69 |
2249 | 2349 | 0.250553 | CTGTGGCGGTAGGGTTTCAA | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2250 | 2350 | 0.402504 | TGTGGCGGTAGGGTTTCAAT | 59.597 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2251 | 2351 | 1.092348 | GTGGCGGTAGGGTTTCAATC | 58.908 | 55.000 | 0.00 | 0.00 | 0.00 | 2.67 |
2252 | 2352 | 0.034863 | TGGCGGTAGGGTTTCAATCC | 60.035 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2253 | 2353 | 0.255033 | GGCGGTAGGGTTTCAATCCT | 59.745 | 55.000 | 0.00 | 0.00 | 43.47 | 3.24 |
2254 | 2354 | 1.664873 | GCGGTAGGGTTTCAATCCTC | 58.335 | 55.000 | 0.00 | 0.00 | 39.27 | 3.71 |
2255 | 2355 | 1.209747 | GCGGTAGGGTTTCAATCCTCT | 59.790 | 52.381 | 0.00 | 0.00 | 39.27 | 3.69 |
2256 | 2356 | 2.742204 | GCGGTAGGGTTTCAATCCTCTC | 60.742 | 54.545 | 0.00 | 0.00 | 39.27 | 3.20 |
2257 | 2357 | 2.158943 | CGGTAGGGTTTCAATCCTCTCC | 60.159 | 54.545 | 0.00 | 0.00 | 39.27 | 3.71 |
2258 | 2358 | 3.116174 | GGTAGGGTTTCAATCCTCTCCT | 58.884 | 50.000 | 0.00 | 0.00 | 39.27 | 3.69 |
2259 | 2359 | 3.134985 | GGTAGGGTTTCAATCCTCTCCTC | 59.865 | 52.174 | 0.00 | 0.00 | 39.27 | 3.71 |
2260 | 2360 | 2.200955 | AGGGTTTCAATCCTCTCCTCC | 58.799 | 52.381 | 0.00 | 0.00 | 32.95 | 4.30 |
2261 | 2361 | 1.213182 | GGGTTTCAATCCTCTCCTCCC | 59.787 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
2262 | 2362 | 1.213182 | GGTTTCAATCCTCTCCTCCCC | 59.787 | 57.143 | 0.00 | 0.00 | 0.00 | 4.81 |
2263 | 2363 | 2.200955 | GTTTCAATCCTCTCCTCCCCT | 58.799 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
12 | 13 | 3.649277 | CTTCGAGGTGGCCACGAGG | 62.649 | 68.421 | 29.08 | 19.50 | 45.90 | 4.63 |
13 | 14 | 2.125912 | CTTCGAGGTGGCCACGAG | 60.126 | 66.667 | 29.08 | 21.37 | 45.90 | 4.18 |
14 | 15 | 4.373116 | GCTTCGAGGTGGCCACGA | 62.373 | 66.667 | 29.08 | 20.68 | 44.00 | 4.35 |
15 | 16 | 4.379243 | AGCTTCGAGGTGGCCACG | 62.379 | 66.667 | 29.08 | 18.56 | 38.87 | 4.94 |
16 | 17 | 2.435059 | GAGCTTCGAGGTGGCCAC | 60.435 | 66.667 | 28.57 | 28.57 | 0.00 | 5.01 |
17 | 18 | 3.706373 | GGAGCTTCGAGGTGGCCA | 61.706 | 66.667 | 0.00 | 0.00 | 0.00 | 5.36 |
18 | 19 | 4.475135 | GGGAGCTTCGAGGTGGCC | 62.475 | 72.222 | 0.00 | 0.00 | 0.00 | 5.36 |
19 | 20 | 3.394836 | AGGGAGCTTCGAGGTGGC | 61.395 | 66.667 | 0.00 | 0.00 | 0.00 | 5.01 |
20 | 21 | 1.984570 | TCAGGGAGCTTCGAGGTGG | 60.985 | 63.158 | 0.00 | 0.00 | 0.00 | 4.61 |
21 | 22 | 1.216710 | GTCAGGGAGCTTCGAGGTG | 59.783 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
22 | 23 | 2.344203 | CGTCAGGGAGCTTCGAGGT | 61.344 | 63.158 | 0.00 | 0.00 | 0.00 | 3.85 |
23 | 24 | 2.272918 | GACGTCAGGGAGCTTCGAGG | 62.273 | 65.000 | 11.55 | 0.00 | 0.00 | 4.63 |
24 | 25 | 1.137825 | GACGTCAGGGAGCTTCGAG | 59.862 | 63.158 | 11.55 | 0.00 | 0.00 | 4.04 |
25 | 26 | 0.035725 | TAGACGTCAGGGAGCTTCGA | 60.036 | 55.000 | 19.50 | 0.00 | 0.00 | 3.71 |
26 | 27 | 0.099082 | GTAGACGTCAGGGAGCTTCG | 59.901 | 60.000 | 19.50 | 0.00 | 0.00 | 3.79 |
27 | 28 | 1.402613 | GAGTAGACGTCAGGGAGCTTC | 59.597 | 57.143 | 19.50 | 0.00 | 0.00 | 3.86 |
28 | 29 | 1.004979 | AGAGTAGACGTCAGGGAGCTT | 59.995 | 52.381 | 19.50 | 0.00 | 0.00 | 3.74 |
29 | 30 | 0.621609 | AGAGTAGACGTCAGGGAGCT | 59.378 | 55.000 | 19.50 | 5.84 | 0.00 | 4.09 |
30 | 31 | 2.328819 | TAGAGTAGACGTCAGGGAGC | 57.671 | 55.000 | 19.50 | 1.74 | 0.00 | 4.70 |
31 | 32 | 3.872771 | GACTTAGAGTAGACGTCAGGGAG | 59.127 | 52.174 | 19.50 | 8.30 | 0.00 | 4.30 |
32 | 33 | 3.518705 | AGACTTAGAGTAGACGTCAGGGA | 59.481 | 47.826 | 19.50 | 0.00 | 0.00 | 4.20 |
33 | 34 | 3.872771 | GAGACTTAGAGTAGACGTCAGGG | 59.127 | 52.174 | 19.50 | 1.47 | 0.00 | 4.45 |
34 | 35 | 3.872771 | GGAGACTTAGAGTAGACGTCAGG | 59.127 | 52.174 | 19.50 | 0.00 | 0.00 | 3.86 |
35 | 36 | 4.569162 | CAGGAGACTTAGAGTAGACGTCAG | 59.431 | 50.000 | 19.50 | 6.80 | 40.21 | 3.51 |
36 | 37 | 4.505808 | CAGGAGACTTAGAGTAGACGTCA | 58.494 | 47.826 | 19.50 | 0.48 | 40.21 | 4.35 |
37 | 38 | 3.872771 | CCAGGAGACTTAGAGTAGACGTC | 59.127 | 52.174 | 7.70 | 7.70 | 40.21 | 4.34 |
38 | 39 | 3.518705 | TCCAGGAGACTTAGAGTAGACGT | 59.481 | 47.826 | 0.00 | 0.00 | 40.21 | 4.34 |
39 | 40 | 4.139859 | TCCAGGAGACTTAGAGTAGACG | 57.860 | 50.000 | 0.00 | 0.00 | 40.21 | 4.18 |
40 | 41 | 5.221165 | GCAATCCAGGAGACTTAGAGTAGAC | 60.221 | 48.000 | 0.00 | 0.00 | 40.21 | 2.59 |
41 | 42 | 4.890581 | GCAATCCAGGAGACTTAGAGTAGA | 59.109 | 45.833 | 0.00 | 0.00 | 40.21 | 2.59 |
42 | 43 | 4.892934 | AGCAATCCAGGAGACTTAGAGTAG | 59.107 | 45.833 | 0.00 | 0.00 | 40.21 | 2.57 |
43 | 44 | 4.873010 | AGCAATCCAGGAGACTTAGAGTA | 58.127 | 43.478 | 0.00 | 0.00 | 40.21 | 2.59 |
44 | 45 | 3.718723 | AGCAATCCAGGAGACTTAGAGT | 58.281 | 45.455 | 0.00 | 0.00 | 40.21 | 3.24 |
45 | 46 | 4.692228 | GAAGCAATCCAGGAGACTTAGAG | 58.308 | 47.826 | 0.00 | 0.00 | 40.21 | 2.43 |
46 | 47 | 4.744795 | GAAGCAATCCAGGAGACTTAGA | 57.255 | 45.455 | 0.00 | 0.00 | 40.21 | 2.10 |
58 | 59 | 3.378911 | TTTTTGGAACGGAAGCAATCC | 57.621 | 42.857 | 0.00 | 0.00 | 45.57 | 3.01 |
59 | 60 | 6.156519 | AGTTATTTTTGGAACGGAAGCAATC | 58.843 | 36.000 | 0.00 | 0.00 | 0.00 | 2.67 |
60 | 61 | 6.015434 | AGAGTTATTTTTGGAACGGAAGCAAT | 60.015 | 34.615 | 0.00 | 0.00 | 0.00 | 3.56 |
61 | 62 | 5.300792 | AGAGTTATTTTTGGAACGGAAGCAA | 59.699 | 36.000 | 0.00 | 0.00 | 0.00 | 3.91 |
62 | 63 | 4.825085 | AGAGTTATTTTTGGAACGGAAGCA | 59.175 | 37.500 | 0.00 | 0.00 | 0.00 | 3.91 |
63 | 64 | 5.181433 | AGAGAGTTATTTTTGGAACGGAAGC | 59.819 | 40.000 | 0.00 | 0.00 | 0.00 | 3.86 |
64 | 65 | 6.401153 | CGAGAGAGTTATTTTTGGAACGGAAG | 60.401 | 42.308 | 0.00 | 0.00 | 0.00 | 3.46 |
65 | 66 | 5.407387 | CGAGAGAGTTATTTTTGGAACGGAA | 59.593 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
66 | 67 | 4.927425 | CGAGAGAGTTATTTTTGGAACGGA | 59.073 | 41.667 | 0.00 | 0.00 | 0.00 | 4.69 |
67 | 68 | 4.927425 | TCGAGAGAGTTATTTTTGGAACGG | 59.073 | 41.667 | 0.00 | 0.00 | 34.84 | 4.44 |
68 | 69 | 6.401153 | CCTTCGAGAGAGTTATTTTTGGAACG | 60.401 | 42.308 | 0.00 | 0.00 | 43.69 | 3.95 |
69 | 70 | 6.427242 | ACCTTCGAGAGAGTTATTTTTGGAAC | 59.573 | 38.462 | 0.00 | 0.00 | 43.69 | 3.62 |
70 | 71 | 6.531021 | ACCTTCGAGAGAGTTATTTTTGGAA | 58.469 | 36.000 | 0.00 | 0.00 | 43.69 | 3.53 |
71 | 72 | 6.110411 | ACCTTCGAGAGAGTTATTTTTGGA | 57.890 | 37.500 | 0.00 | 0.00 | 43.69 | 3.53 |
72 | 73 | 6.803154 | AACCTTCGAGAGAGTTATTTTTGG | 57.197 | 37.500 | 0.00 | 0.00 | 43.69 | 3.28 |
73 | 74 | 7.861630 | TGAAACCTTCGAGAGAGTTATTTTTG | 58.138 | 34.615 | 0.00 | 0.00 | 43.69 | 2.44 |
74 | 75 | 8.622948 | ATGAAACCTTCGAGAGAGTTATTTTT | 57.377 | 30.769 | 0.00 | 0.00 | 43.69 | 1.94 |
75 | 76 | 8.622948 | AATGAAACCTTCGAGAGAGTTATTTT | 57.377 | 30.769 | 0.00 | 0.00 | 43.69 | 1.82 |
76 | 77 | 7.334671 | GGAATGAAACCTTCGAGAGAGTTATTT | 59.665 | 37.037 | 0.00 | 0.00 | 43.69 | 1.40 |
77 | 78 | 6.819146 | GGAATGAAACCTTCGAGAGAGTTATT | 59.181 | 38.462 | 0.00 | 0.00 | 43.69 | 1.40 |
78 | 79 | 6.342111 | GGAATGAAACCTTCGAGAGAGTTAT | 58.658 | 40.000 | 0.00 | 0.00 | 43.69 | 1.89 |
79 | 80 | 5.621555 | CGGAATGAAACCTTCGAGAGAGTTA | 60.622 | 44.000 | 0.00 | 0.00 | 43.69 | 2.24 |
80 | 81 | 4.570930 | GGAATGAAACCTTCGAGAGAGTT | 58.429 | 43.478 | 0.00 | 0.00 | 43.69 | 3.01 |
81 | 82 | 3.367498 | CGGAATGAAACCTTCGAGAGAGT | 60.367 | 47.826 | 0.00 | 0.00 | 43.69 | 3.24 |
82 | 83 | 3.182967 | CGGAATGAAACCTTCGAGAGAG | 58.817 | 50.000 | 0.00 | 0.00 | 43.69 | 3.20 |
83 | 84 | 2.561419 | ACGGAATGAAACCTTCGAGAGA | 59.439 | 45.455 | 0.00 | 0.00 | 39.20 | 3.10 |
84 | 85 | 2.960819 | ACGGAATGAAACCTTCGAGAG | 58.039 | 47.619 | 0.00 | 0.00 | 0.00 | 3.20 |
85 | 86 | 3.396260 | AACGGAATGAAACCTTCGAGA | 57.604 | 42.857 | 0.00 | 0.00 | 0.00 | 4.04 |
86 | 87 | 3.364964 | CCAAACGGAATGAAACCTTCGAG | 60.365 | 47.826 | 0.00 | 0.00 | 0.00 | 4.04 |
87 | 88 | 2.550606 | CCAAACGGAATGAAACCTTCGA | 59.449 | 45.455 | 0.00 | 0.00 | 0.00 | 3.71 |
88 | 89 | 2.550606 | TCCAAACGGAATGAAACCTTCG | 59.449 | 45.455 | 0.00 | 0.00 | 0.00 | 3.79 |
89 | 90 | 3.568430 | AGTCCAAACGGAATGAAACCTTC | 59.432 | 43.478 | 0.00 | 0.00 | 33.16 | 3.46 |
90 | 91 | 3.562182 | AGTCCAAACGGAATGAAACCTT | 58.438 | 40.909 | 0.00 | 0.00 | 33.16 | 3.50 |
91 | 92 | 3.146847 | GAGTCCAAACGGAATGAAACCT | 58.853 | 45.455 | 0.00 | 0.00 | 33.16 | 3.50 |
92 | 93 | 2.228103 | GGAGTCCAAACGGAATGAAACC | 59.772 | 50.000 | 3.60 | 0.00 | 33.16 | 3.27 |
93 | 94 | 2.095919 | CGGAGTCCAAACGGAATGAAAC | 60.096 | 50.000 | 10.49 | 0.00 | 33.16 | 2.78 |
94 | 95 | 2.147958 | CGGAGTCCAAACGGAATGAAA | 58.852 | 47.619 | 10.49 | 0.00 | 33.16 | 2.69 |
95 | 96 | 1.071071 | ACGGAGTCCAAACGGAATGAA | 59.929 | 47.619 | 10.49 | 0.00 | 29.74 | 2.57 |
96 | 97 | 0.682852 | ACGGAGTCCAAACGGAATGA | 59.317 | 50.000 | 10.49 | 0.00 | 29.74 | 2.57 |
97 | 98 | 1.519408 | AACGGAGTCCAAACGGAATG | 58.481 | 50.000 | 10.49 | 0.00 | 45.00 | 2.67 |
98 | 99 | 1.877443 | CAAACGGAGTCCAAACGGAAT | 59.123 | 47.619 | 10.49 | 0.00 | 45.00 | 3.01 |
99 | 100 | 1.134461 | TCAAACGGAGTCCAAACGGAA | 60.134 | 47.619 | 10.49 | 0.00 | 45.00 | 4.30 |
100 | 101 | 0.464870 | TCAAACGGAGTCCAAACGGA | 59.535 | 50.000 | 10.49 | 0.00 | 45.00 | 4.69 |
101 | 102 | 1.519408 | ATCAAACGGAGTCCAAACGG | 58.481 | 50.000 | 10.49 | 0.00 | 45.00 | 4.44 |
102 | 103 | 4.201783 | GGAATATCAAACGGAGTCCAAACG | 60.202 | 45.833 | 10.49 | 0.00 | 45.00 | 3.60 |
103 | 104 | 4.941873 | AGGAATATCAAACGGAGTCCAAAC | 59.058 | 41.667 | 10.49 | 0.00 | 45.00 | 2.93 |
104 | 105 | 5.174037 | AGGAATATCAAACGGAGTCCAAA | 57.826 | 39.130 | 10.49 | 0.00 | 45.00 | 3.28 |
105 | 106 | 4.837093 | AGGAATATCAAACGGAGTCCAA | 57.163 | 40.909 | 10.49 | 0.00 | 45.00 | 3.53 |
106 | 107 | 4.837093 | AAGGAATATCAAACGGAGTCCA | 57.163 | 40.909 | 10.49 | 0.00 | 45.00 | 4.02 |
107 | 108 | 5.880887 | AGAAAAGGAATATCAAACGGAGTCC | 59.119 | 40.000 | 0.00 | 0.00 | 45.00 | 3.85 |
108 | 109 | 6.986904 | AGAAAAGGAATATCAAACGGAGTC | 57.013 | 37.500 | 0.00 | 0.00 | 45.00 | 3.36 |
110 | 111 | 6.312918 | TCGAAGAAAAGGAATATCAAACGGAG | 59.687 | 38.462 | 0.00 | 0.00 | 0.00 | 4.63 |
111 | 112 | 6.167685 | TCGAAGAAAAGGAATATCAAACGGA | 58.832 | 36.000 | 0.00 | 0.00 | 0.00 | 4.69 |
112 | 113 | 6.417191 | TCGAAGAAAAGGAATATCAAACGG | 57.583 | 37.500 | 0.00 | 0.00 | 0.00 | 4.44 |
113 | 114 | 7.801315 | TGTTTCGAAGAAAAGGAATATCAAACG | 59.199 | 33.333 | 0.00 | 0.00 | 45.90 | 3.60 |
114 | 115 | 8.902735 | GTGTTTCGAAGAAAAGGAATATCAAAC | 58.097 | 33.333 | 0.00 | 0.00 | 45.90 | 2.93 |
115 | 116 | 8.846211 | AGTGTTTCGAAGAAAAGGAATATCAAA | 58.154 | 29.630 | 0.00 | 0.00 | 45.90 | 2.69 |
116 | 117 | 8.289618 | CAGTGTTTCGAAGAAAAGGAATATCAA | 58.710 | 33.333 | 0.00 | 0.00 | 45.90 | 2.57 |
117 | 118 | 7.659799 | TCAGTGTTTCGAAGAAAAGGAATATCA | 59.340 | 33.333 | 0.00 | 0.00 | 45.90 | 2.15 |
118 | 119 | 8.029642 | TCAGTGTTTCGAAGAAAAGGAATATC | 57.970 | 34.615 | 0.00 | 0.00 | 45.90 | 1.63 |
119 | 120 | 7.979444 | TCAGTGTTTCGAAGAAAAGGAATAT | 57.021 | 32.000 | 0.00 | 0.00 | 45.90 | 1.28 |
120 | 121 | 7.795482 | TTCAGTGTTTCGAAGAAAAGGAATA | 57.205 | 32.000 | 0.00 | 0.00 | 45.90 | 1.75 |
121 | 122 | 6.693315 | TTCAGTGTTTCGAAGAAAAGGAAT | 57.307 | 33.333 | 0.00 | 0.00 | 45.90 | 3.01 |
122 | 123 | 6.503589 | TTTCAGTGTTTCGAAGAAAAGGAA | 57.496 | 33.333 | 6.96 | 2.71 | 45.90 | 3.36 |
123 | 124 | 6.693315 | ATTTCAGTGTTTCGAAGAAAAGGA | 57.307 | 33.333 | 11.92 | 0.00 | 45.90 | 3.36 |
124 | 125 | 7.078228 | CCTATTTCAGTGTTTCGAAGAAAAGG | 58.922 | 38.462 | 11.92 | 13.94 | 45.90 | 3.11 |
125 | 126 | 6.578919 | GCCTATTTCAGTGTTTCGAAGAAAAG | 59.421 | 38.462 | 11.92 | 10.48 | 45.90 | 2.27 |
126 | 127 | 6.038825 | TGCCTATTTCAGTGTTTCGAAGAAAA | 59.961 | 34.615 | 11.92 | 3.47 | 45.90 | 2.29 |
127 | 128 | 5.529430 | TGCCTATTTCAGTGTTTCGAAGAAA | 59.471 | 36.000 | 10.72 | 10.72 | 45.90 | 2.52 |
128 | 129 | 5.060506 | TGCCTATTTCAGTGTTTCGAAGAA | 58.939 | 37.500 | 0.00 | 0.00 | 45.90 | 2.52 |
129 | 130 | 4.637276 | TGCCTATTTCAGTGTTTCGAAGA | 58.363 | 39.130 | 0.00 | 0.00 | 0.00 | 2.87 |
130 | 131 | 5.179368 | TCTTGCCTATTTCAGTGTTTCGAAG | 59.821 | 40.000 | 0.00 | 0.00 | 0.00 | 3.79 |
131 | 132 | 5.060506 | TCTTGCCTATTTCAGTGTTTCGAA | 58.939 | 37.500 | 0.00 | 0.00 | 0.00 | 3.71 |
132 | 133 | 4.637276 | TCTTGCCTATTTCAGTGTTTCGA | 58.363 | 39.130 | 0.00 | 0.00 | 0.00 | 3.71 |
133 | 134 | 5.356882 | TTCTTGCCTATTTCAGTGTTTCG | 57.643 | 39.130 | 0.00 | 0.00 | 0.00 | 3.46 |
134 | 135 | 6.978080 | TGTTTTCTTGCCTATTTCAGTGTTTC | 59.022 | 34.615 | 0.00 | 0.00 | 0.00 | 2.78 |
135 | 136 | 6.872920 | TGTTTTCTTGCCTATTTCAGTGTTT | 58.127 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
136 | 137 | 6.463995 | TGTTTTCTTGCCTATTTCAGTGTT | 57.536 | 33.333 | 0.00 | 0.00 | 0.00 | 3.32 |
137 | 138 | 6.127479 | TGTTGTTTTCTTGCCTATTTCAGTGT | 60.127 | 34.615 | 0.00 | 0.00 | 0.00 | 3.55 |
138 | 139 | 6.272318 | TGTTGTTTTCTTGCCTATTTCAGTG | 58.728 | 36.000 | 0.00 | 0.00 | 0.00 | 3.66 |
139 | 140 | 6.463995 | TGTTGTTTTCTTGCCTATTTCAGT | 57.536 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
140 | 141 | 7.951530 | ATTGTTGTTTTCTTGCCTATTTCAG | 57.048 | 32.000 | 0.00 | 0.00 | 0.00 | 3.02 |
141 | 142 | 8.610896 | CAAATTGTTGTTTTCTTGCCTATTTCA | 58.389 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
142 | 143 | 8.069574 | CCAAATTGTTGTTTTCTTGCCTATTTC | 58.930 | 33.333 | 0.00 | 0.00 | 32.40 | 2.17 |
143 | 144 | 7.013178 | CCCAAATTGTTGTTTTCTTGCCTATTT | 59.987 | 33.333 | 0.00 | 0.00 | 32.40 | 1.40 |
144 | 145 | 6.486320 | CCCAAATTGTTGTTTTCTTGCCTATT | 59.514 | 34.615 | 0.00 | 0.00 | 32.40 | 1.73 |
145 | 146 | 5.997129 | CCCAAATTGTTGTTTTCTTGCCTAT | 59.003 | 36.000 | 0.00 | 0.00 | 32.40 | 2.57 |
146 | 147 | 5.104735 | ACCCAAATTGTTGTTTTCTTGCCTA | 60.105 | 36.000 | 0.00 | 0.00 | 32.40 | 3.93 |
147 | 148 | 4.198530 | CCCAAATTGTTGTTTTCTTGCCT | 58.801 | 39.130 | 0.00 | 0.00 | 32.40 | 4.75 |
148 | 149 | 3.944650 | ACCCAAATTGTTGTTTTCTTGCC | 59.055 | 39.130 | 0.00 | 0.00 | 32.40 | 4.52 |
149 | 150 | 5.331098 | CAACCCAAATTGTTGTTTTCTTGC | 58.669 | 37.500 | 0.00 | 0.00 | 38.58 | 4.01 |
150 | 151 | 5.163673 | CCCAACCCAAATTGTTGTTTTCTTG | 60.164 | 40.000 | 6.44 | 0.00 | 41.13 | 3.02 |
151 | 152 | 4.946772 | CCCAACCCAAATTGTTGTTTTCTT | 59.053 | 37.500 | 6.44 | 0.00 | 41.13 | 2.52 |
152 | 153 | 4.522114 | CCCAACCCAAATTGTTGTTTTCT | 58.478 | 39.130 | 6.44 | 0.00 | 41.13 | 2.52 |
153 | 154 | 3.066064 | GCCCAACCCAAATTGTTGTTTTC | 59.934 | 43.478 | 6.44 | 0.00 | 41.13 | 2.29 |
154 | 155 | 3.020274 | GCCCAACCCAAATTGTTGTTTT | 58.980 | 40.909 | 6.44 | 0.00 | 41.13 | 2.43 |
155 | 156 | 2.649190 | GCCCAACCCAAATTGTTGTTT | 58.351 | 42.857 | 6.44 | 0.00 | 41.13 | 2.83 |
156 | 157 | 1.133945 | GGCCCAACCCAAATTGTTGTT | 60.134 | 47.619 | 0.00 | 0.00 | 41.13 | 2.83 |
157 | 158 | 0.472044 | GGCCCAACCCAAATTGTTGT | 59.528 | 50.000 | 0.00 | 0.00 | 41.13 | 3.32 |
158 | 159 | 0.764271 | AGGCCCAACCCAAATTGTTG | 59.236 | 50.000 | 0.00 | 1.17 | 42.11 | 3.33 |
159 | 160 | 1.055849 | GAGGCCCAACCCAAATTGTT | 58.944 | 50.000 | 0.00 | 0.00 | 40.58 | 2.83 |
160 | 161 | 0.835971 | GGAGGCCCAACCCAAATTGT | 60.836 | 55.000 | 0.00 | 0.00 | 40.58 | 2.71 |
161 | 162 | 1.887344 | CGGAGGCCCAACCCAAATTG | 61.887 | 60.000 | 0.00 | 0.00 | 40.58 | 2.32 |
162 | 163 | 1.609210 | CGGAGGCCCAACCCAAATT | 60.609 | 57.895 | 0.00 | 0.00 | 40.58 | 1.82 |
163 | 164 | 2.037208 | CGGAGGCCCAACCCAAAT | 59.963 | 61.111 | 0.00 | 0.00 | 40.58 | 2.32 |
164 | 165 | 4.293671 | CCGGAGGCCCAACCCAAA | 62.294 | 66.667 | 0.00 | 0.00 | 46.14 | 3.28 |
173 | 174 | 6.309757 | GGACTAACCTATTAACCGGAGGCC | 62.310 | 54.167 | 9.46 | 0.00 | 44.44 | 5.19 |
174 | 175 | 3.244009 | GGACTAACCTATTAACCGGAGGC | 60.244 | 52.174 | 9.46 | 0.00 | 44.44 | 4.70 |
175 | 176 | 4.597404 | GGACTAACCTATTAACCGGAGG | 57.403 | 50.000 | 9.46 | 6.51 | 45.59 | 4.30 |
176 | 177 | 3.962718 | TGGGACTAACCTATTAACCGGAG | 59.037 | 47.826 | 9.46 | 0.00 | 38.98 | 4.63 |
177 | 178 | 3.992999 | TGGGACTAACCTATTAACCGGA | 58.007 | 45.455 | 9.46 | 0.00 | 38.98 | 5.14 |
178 | 179 | 4.758773 | TTGGGACTAACCTATTAACCGG | 57.241 | 45.455 | 0.00 | 0.00 | 38.98 | 5.28 |
179 | 180 | 7.337436 | TCATTTTTGGGACTAACCTATTAACCG | 59.663 | 37.037 | 0.00 | 0.00 | 38.98 | 4.44 |
180 | 181 | 8.584063 | TCATTTTTGGGACTAACCTATTAACC | 57.416 | 34.615 | 0.00 | 0.00 | 38.98 | 2.85 |
203 | 204 | 9.742144 | TGGGCTTTACTTTACACTTTTATATCA | 57.258 | 29.630 | 0.00 | 0.00 | 0.00 | 2.15 |
209 | 210 | 8.697292 | TGTTTATGGGCTTTACTTTACACTTTT | 58.303 | 29.630 | 0.00 | 0.00 | 0.00 | 2.27 |
210 | 211 | 8.240267 | TGTTTATGGGCTTTACTTTACACTTT | 57.760 | 30.769 | 0.00 | 0.00 | 0.00 | 2.66 |
211 | 212 | 7.826918 | TGTTTATGGGCTTTACTTTACACTT | 57.173 | 32.000 | 0.00 | 0.00 | 0.00 | 3.16 |
212 | 213 | 7.122204 | GGATGTTTATGGGCTTTACTTTACACT | 59.878 | 37.037 | 0.00 | 0.00 | 0.00 | 3.55 |
213 | 214 | 7.094118 | TGGATGTTTATGGGCTTTACTTTACAC | 60.094 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
214 | 215 | 6.948886 | TGGATGTTTATGGGCTTTACTTTACA | 59.051 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
215 | 216 | 7.399245 | TGGATGTTTATGGGCTTTACTTTAC | 57.601 | 36.000 | 0.00 | 0.00 | 0.00 | 2.01 |
216 | 217 | 8.423906 | TTTGGATGTTTATGGGCTTTACTTTA | 57.576 | 30.769 | 0.00 | 0.00 | 0.00 | 1.85 |
217 | 218 | 6.926630 | TTGGATGTTTATGGGCTTTACTTT | 57.073 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
218 | 219 | 6.926630 | TTTGGATGTTTATGGGCTTTACTT | 57.073 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
219 | 220 | 6.268847 | TGTTTTGGATGTTTATGGGCTTTACT | 59.731 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
220 | 221 | 6.459923 | TGTTTTGGATGTTTATGGGCTTTAC | 58.540 | 36.000 | 0.00 | 0.00 | 0.00 | 2.01 |
221 | 222 | 6.672266 | TGTTTTGGATGTTTATGGGCTTTA | 57.328 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
222 | 223 | 5.559148 | TGTTTTGGATGTTTATGGGCTTT | 57.441 | 34.783 | 0.00 | 0.00 | 0.00 | 3.51 |
223 | 224 | 5.071653 | ACTTGTTTTGGATGTTTATGGGCTT | 59.928 | 36.000 | 0.00 | 0.00 | 0.00 | 4.35 |
224 | 225 | 4.592778 | ACTTGTTTTGGATGTTTATGGGCT | 59.407 | 37.500 | 0.00 | 0.00 | 0.00 | 5.19 |
225 | 226 | 4.893608 | ACTTGTTTTGGATGTTTATGGGC | 58.106 | 39.130 | 0.00 | 0.00 | 0.00 | 5.36 |
275 | 276 | 9.292195 | TGTGATACGTCTCCAACATATCTATAA | 57.708 | 33.333 | 0.00 | 0.00 | 34.78 | 0.98 |
276 | 277 | 8.727910 | GTGTGATACGTCTCCAACATATCTATA | 58.272 | 37.037 | 0.00 | 0.00 | 34.78 | 1.31 |
277 | 278 | 7.594714 | GTGTGATACGTCTCCAACATATCTAT | 58.405 | 38.462 | 0.00 | 0.00 | 34.78 | 1.98 |
278 | 279 | 6.967135 | GTGTGATACGTCTCCAACATATCTA | 58.033 | 40.000 | 0.00 | 0.00 | 34.78 | 1.98 |
279 | 280 | 5.833082 | GTGTGATACGTCTCCAACATATCT | 58.167 | 41.667 | 0.00 | 0.00 | 34.78 | 1.98 |
294 | 295 | 2.423577 | AGTTTCTTGCCCGTGTGATAC | 58.576 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
295 | 296 | 2.811431 | CAAGTTTCTTGCCCGTGTGATA | 59.189 | 45.455 | 0.00 | 0.00 | 0.00 | 2.15 |
296 | 297 | 1.608590 | CAAGTTTCTTGCCCGTGTGAT | 59.391 | 47.619 | 0.00 | 0.00 | 0.00 | 3.06 |
297 | 298 | 1.021202 | CAAGTTTCTTGCCCGTGTGA | 58.979 | 50.000 | 0.00 | 0.00 | 0.00 | 3.58 |
298 | 299 | 0.594796 | GCAAGTTTCTTGCCCGTGTG | 60.595 | 55.000 | 19.68 | 0.00 | 39.38 | 3.82 |
389 | 390 | 4.525100 | GGCATCAAGTAAAGGGTTAAACCA | 59.475 | 41.667 | 13.24 | 0.00 | 41.02 | 3.67 |
397 | 398 | 3.012518 | CTGTGAGGCATCAAGTAAAGGG | 58.987 | 50.000 | 0.92 | 0.00 | 37.14 | 3.95 |
403 | 404 | 3.639099 | CCACTGTGAGGCATCAAGT | 57.361 | 52.632 | 9.86 | 6.51 | 37.14 | 3.16 |
490 | 491 | 3.070159 | TGTCACTCCTGAACCTCTTCTTG | 59.930 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
577 | 578 | 5.336690 | GCATTCTCCACAATTGTTGGTGTAT | 60.337 | 40.000 | 8.77 | 10.73 | 33.19 | 2.29 |
578 | 579 | 4.022416 | GCATTCTCCACAATTGTTGGTGTA | 60.022 | 41.667 | 8.77 | 9.08 | 33.19 | 2.90 |
774 | 775 | 2.285368 | TCCTTCCTCCACGGCCAT | 60.285 | 61.111 | 2.24 | 0.00 | 0.00 | 4.40 |
1087 | 1130 | 6.827762 | GGAATCTTCACATCTTTCTCCTTCAT | 59.172 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
1336 | 1379 | 3.788227 | ATCCAGGTGAAGTACTTGCAA | 57.212 | 42.857 | 14.14 | 0.00 | 35.22 | 4.08 |
1397 | 1440 | 2.741878 | GCTGGCGCCTAAGACAATCTTA | 60.742 | 50.000 | 29.70 | 0.17 | 37.89 | 2.10 |
1426 | 1469 | 4.536765 | AGCCTCTTTGAAACCTTTCTTCA | 58.463 | 39.130 | 0.00 | 0.00 | 38.02 | 3.02 |
1463 | 1506 | 2.499289 | GCTCCATCCTCTCTTTCTGACA | 59.501 | 50.000 | 0.00 | 0.00 | 0.00 | 3.58 |
1565 | 1608 | 1.073722 | CCTCCTCTTGTGCCTTGCA | 59.926 | 57.895 | 0.00 | 0.00 | 35.60 | 4.08 |
1613 | 1657 | 2.429610 | GGCTTTACTGAGTCATACGGGA | 59.570 | 50.000 | 0.00 | 0.00 | 0.00 | 5.14 |
1767 | 1815 | 1.069022 | CACCTTGCAAACATCTCCACG | 60.069 | 52.381 | 0.00 | 0.00 | 0.00 | 4.94 |
1846 | 1894 | 1.610102 | CCCCTCTTCTCAGCACAACAG | 60.610 | 57.143 | 0.00 | 0.00 | 0.00 | 3.16 |
1891 | 1981 | 2.809299 | GCGGTAGGGTGAAAAACAGAGT | 60.809 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 |
1902 | 1992 | 4.778143 | GCCTGTGGCGGTAGGGTG | 62.778 | 72.222 | 4.07 | 0.00 | 39.62 | 4.61 |
1933 | 2031 | 0.815734 | TCGTCACAGTAGCTTAGCCC | 59.184 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
1934 | 2032 | 1.743958 | TCTCGTCACAGTAGCTTAGCC | 59.256 | 52.381 | 0.00 | 0.00 | 0.00 | 3.93 |
1935 | 2033 | 3.489180 | TTCTCGTCACAGTAGCTTAGC | 57.511 | 47.619 | 0.00 | 0.00 | 0.00 | 3.09 |
1936 | 2034 | 5.690409 | TGTTTTTCTCGTCACAGTAGCTTAG | 59.310 | 40.000 | 0.00 | 0.00 | 0.00 | 2.18 |
1937 | 2035 | 5.593968 | TGTTTTTCTCGTCACAGTAGCTTA | 58.406 | 37.500 | 0.00 | 0.00 | 0.00 | 3.09 |
1938 | 2036 | 4.439057 | TGTTTTTCTCGTCACAGTAGCTT | 58.561 | 39.130 | 0.00 | 0.00 | 0.00 | 3.74 |
1939 | 2037 | 4.054780 | TGTTTTTCTCGTCACAGTAGCT | 57.945 | 40.909 | 0.00 | 0.00 | 0.00 | 3.32 |
1940 | 2038 | 4.506654 | TCTTGTTTTTCTCGTCACAGTAGC | 59.493 | 41.667 | 0.00 | 0.00 | 0.00 | 3.58 |
1943 | 2041 | 4.094442 | GGTTCTTGTTTTTCTCGTCACAGT | 59.906 | 41.667 | 0.00 | 0.00 | 0.00 | 3.55 |
1953 | 2051 | 2.469826 | CCGCCAAGGTTCTTGTTTTTC | 58.530 | 47.619 | 6.86 | 0.00 | 34.51 | 2.29 |
1954 | 2052 | 2.595124 | CCGCCAAGGTTCTTGTTTTT | 57.405 | 45.000 | 6.86 | 0.00 | 34.51 | 1.94 |
1978 | 2076 | 0.767060 | CTATGGTGGTAGGGTCCCCC | 60.767 | 65.000 | 3.51 | 0.00 | 45.90 | 5.40 |
1979 | 2077 | 1.416480 | GCTATGGTGGTAGGGTCCCC | 61.416 | 65.000 | 3.51 | 0.00 | 0.00 | 4.81 |
1980 | 2078 | 1.416480 | GGCTATGGTGGTAGGGTCCC | 61.416 | 65.000 | 0.00 | 0.00 | 0.00 | 4.46 |
1981 | 2079 | 0.400093 | AGGCTATGGTGGTAGGGTCC | 60.400 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
1982 | 2080 | 1.049402 | GAGGCTATGGTGGTAGGGTC | 58.951 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
1998 | 2096 | 2.125106 | GCAACCTACCGCCAGAGG | 60.125 | 66.667 | 0.00 | 0.00 | 38.92 | 3.69 |
2000 | 2098 | 2.662596 | CTGCAACCTACCGCCAGA | 59.337 | 61.111 | 0.00 | 0.00 | 0.00 | 3.86 |
2012 | 2110 | 1.971505 | CTGGCGGTAGGATCCTGCAA | 61.972 | 60.000 | 28.38 | 14.80 | 0.00 | 4.08 |
2016 | 2114 | 2.122813 | CCCTGGCGGTAGGATCCT | 60.123 | 66.667 | 20.48 | 20.48 | 40.42 | 3.24 |
2020 | 2118 | 3.326385 | ATGGTCCCTGGCGGTAGGA | 62.326 | 63.158 | 2.18 | 0.00 | 40.42 | 2.94 |
2050 | 2148 | 4.342862 | TCTCATCACAATAGCTTAGCCC | 57.657 | 45.455 | 0.00 | 0.00 | 0.00 | 5.19 |
2052 | 2150 | 8.400947 | TCATTTTTCTCATCACAATAGCTTAGC | 58.599 | 33.333 | 0.00 | 0.00 | 0.00 | 3.09 |
2054 | 2152 | 9.453572 | ACTCATTTTTCTCATCACAATAGCTTA | 57.546 | 29.630 | 0.00 | 0.00 | 0.00 | 3.09 |
2057 | 2155 | 6.471519 | GCACTCATTTTTCTCATCACAATAGC | 59.528 | 38.462 | 0.00 | 0.00 | 0.00 | 2.97 |
2060 | 2158 | 5.337009 | GGGCACTCATTTTTCTCATCACAAT | 60.337 | 40.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2061 | 2159 | 4.022068 | GGGCACTCATTTTTCTCATCACAA | 60.022 | 41.667 | 0.00 | 0.00 | 0.00 | 3.33 |
2065 | 2163 | 3.129988 | CCAGGGCACTCATTTTTCTCATC | 59.870 | 47.826 | 0.00 | 0.00 | 0.00 | 2.92 |
2067 | 2165 | 2.517959 | CCAGGGCACTCATTTTTCTCA | 58.482 | 47.619 | 0.00 | 0.00 | 0.00 | 3.27 |
2069 | 2167 | 1.260544 | GCCAGGGCACTCATTTTTCT | 58.739 | 50.000 | 5.20 | 0.00 | 41.49 | 2.52 |
2070 | 2168 | 0.109132 | CGCCAGGGCACTCATTTTTC | 60.109 | 55.000 | 11.42 | 0.00 | 42.06 | 2.29 |
2074 | 2172 | 2.257409 | CTACCGCCAGGGCACTCATT | 62.257 | 60.000 | 11.42 | 0.00 | 43.47 | 2.57 |
2076 | 2174 | 3.390521 | CTACCGCCAGGGCACTCA | 61.391 | 66.667 | 11.42 | 0.00 | 43.47 | 3.41 |
2077 | 2175 | 4.162690 | CCTACCGCCAGGGCACTC | 62.163 | 72.222 | 11.42 | 0.00 | 43.47 | 3.51 |
2097 | 2195 | 1.463674 | CATTTGGCGGTAGGCTTCTT | 58.536 | 50.000 | 0.00 | 0.00 | 44.18 | 2.52 |
2098 | 2196 | 1.032114 | GCATTTGGCGGTAGGCTTCT | 61.032 | 55.000 | 0.00 | 0.00 | 44.18 | 2.85 |
2099 | 2197 | 1.433471 | GCATTTGGCGGTAGGCTTC | 59.567 | 57.895 | 0.00 | 0.00 | 44.18 | 3.86 |
2100 | 2198 | 3.603365 | GCATTTGGCGGTAGGCTT | 58.397 | 55.556 | 0.00 | 0.00 | 44.18 | 4.35 |
2113 | 2211 | 2.272146 | CCCTACCGCCACAGCATT | 59.728 | 61.111 | 0.00 | 0.00 | 39.83 | 3.56 |
2114 | 2212 | 3.009115 | ACCCTACCGCCACAGCAT | 61.009 | 61.111 | 0.00 | 0.00 | 39.83 | 3.79 |
2115 | 2213 | 3.702048 | GACCCTACCGCCACAGCA | 61.702 | 66.667 | 0.00 | 0.00 | 39.83 | 4.41 |
2119 | 2217 | 2.046604 | GGTTGACCCTACCGCCAC | 60.047 | 66.667 | 0.00 | 0.00 | 0.00 | 5.01 |
2152 | 2250 | 4.981794 | AGTTTCTGTGACAAGAAAAACGG | 58.018 | 39.130 | 10.31 | 0.00 | 45.30 | 4.44 |
2156 | 2254 | 3.951680 | GGGGAGTTTCTGTGACAAGAAAA | 59.048 | 43.478 | 10.31 | 0.00 | 45.30 | 2.29 |
2194 | 2294 | 2.122813 | AGGATCCTACCGCCAGGG | 60.123 | 66.667 | 14.27 | 0.00 | 43.47 | 4.45 |
2205 | 2305 | 1.523938 | GCGGTAGGTTGCAGGATCC | 60.524 | 63.158 | 2.48 | 2.48 | 0.00 | 3.36 |
2207 | 2307 | 2.257409 | CTGGCGGTAGGTTGCAGGAT | 62.257 | 60.000 | 0.00 | 0.00 | 0.00 | 3.24 |
2211 | 2311 | 2.662596 | CTCTGGCGGTAGGTTGCA | 59.337 | 61.111 | 0.00 | 0.00 | 0.00 | 4.08 |
2226 | 2326 | 4.162690 | CCCTACCGCCACAGCCTC | 62.163 | 72.222 | 0.00 | 0.00 | 34.57 | 4.70 |
2229 | 2329 | 2.033602 | AAACCCTACCGCCACAGC | 59.966 | 61.111 | 0.00 | 0.00 | 0.00 | 4.40 |
2232 | 2332 | 1.092348 | GATTGAAACCCTACCGCCAC | 58.908 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.