Multiple sequence alignment - TraesCS5B01G214400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G214400 chr5B 100.000 4715 0 0 1 4715 387177452 387172738 0.000000e+00 8708
1 TraesCS5B01G214400 chr5A 86.846 2562 191 68 2232 4715 432035345 432032852 0.000000e+00 2730
2 TraesCS5B01G214400 chr5A 78.166 1287 124 80 380 1608 432037267 432036080 0.000000e+00 675
3 TraesCS5B01G214400 chr5A 86.935 199 20 3 1771 1969 432035922 432035730 7.940000e-53 219
4 TraesCS5B01G214400 chr5A 79.257 323 27 14 6 306 432037594 432037290 6.230000e-44 189
5 TraesCS5B01G214400 chr5A 83.721 172 13 6 6 166 432046091 432045924 1.060000e-31 148
6 TraesCS5B01G214400 chr5A 88.889 117 13 0 1668 1784 432036057 432035941 1.370000e-30 145
7 TraesCS5B01G214400 chr5D 92.943 1162 61 9 2630 3771 331403975 331402815 0.000000e+00 1672
8 TraesCS5B01G214400 chr5D 87.508 1481 88 37 469 1918 331406461 331405047 0.000000e+00 1620
9 TraesCS5B01G214400 chr5D 91.028 535 30 11 3805 4329 331402754 331402228 0.000000e+00 706
10 TraesCS5B01G214400 chr5D 89.414 444 26 15 10 446 331406963 331406534 1.490000e-149 540
11 TraesCS5B01G214400 chr5D 90.080 373 27 3 4352 4715 331402154 331401783 4.270000e-130 475
12 TraesCS5B01G214400 chr2B 95.238 84 4 0 2098 2181 655006821 655006904 2.960000e-27 134
13 TraesCS5B01G214400 chr2B 91.209 91 8 0 2097 2187 407234044 407233954 1.780000e-24 124
14 TraesCS5B01G214400 chr2B 90.526 95 7 2 2087 2181 701494143 701494051 1.780000e-24 124
15 TraesCS5B01G214400 chr2B 89.583 96 9 1 2086 2181 107224896 107224802 2.300000e-23 121
16 TraesCS5B01G214400 chr3A 94.118 85 5 0 2097 2181 154641505 154641421 3.830000e-26 130
17 TraesCS5B01G214400 chr3A 91.209 91 8 0 2097 2187 52198987 52198897 1.780000e-24 124
18 TraesCS5B01G214400 chr4A 92.308 91 6 1 2092 2181 86910396 86910486 1.380000e-25 128
19 TraesCS5B01G214400 chr7B 89.583 96 8 2 2087 2181 305124055 305124149 2.300000e-23 121
20 TraesCS5B01G214400 chr7B 79.042 167 35 0 2936 3102 577201815 577201981 1.070000e-21 115
21 TraesCS5B01G214400 chr1B 90.805 87 8 0 2101 2187 286320077 286319991 2.980000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G214400 chr5B 387172738 387177452 4714 True 8708.0 8708 100.0000 1 4715 1 chr5B.!!$R1 4714
1 TraesCS5B01G214400 chr5A 432032852 432037594 4742 True 791.6 2730 84.0186 6 4715 5 chr5A.!!$R2 4709
2 TraesCS5B01G214400 chr5D 331401783 331406963 5180 True 1002.6 1672 90.1946 10 4715 5 chr5D.!!$R1 4705

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
550 643 0.032813 TAGGGTTGGGTCCTCGTAGG 60.033 60.0 0.0 0.0 35.92 3.18 F
556 649 0.107508 TGGGTCCTCGTAGGTCGTAG 60.108 60.0 0.0 0.0 40.80 3.51 F
2069 2443 0.036010 CCGAGGAAACACATCAGCCT 60.036 55.0 0.0 0.0 0.00 4.58 F
2899 3520 0.040058 TGATGGACCTGCTGCCAAAT 59.960 50.0 0.0 0.0 37.78 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2050 2424 0.036010 AGGCTGATGTGTTTCCTCGG 60.036 55.0 0.00 0.00 0.00 4.63 R
2098 2472 0.549950 TTCGGACGGAGGGAGTATCT 59.450 55.0 0.00 0.00 33.73 1.98 R
2904 3525 0.025128 GATTCTTCCGAACGCGCTTC 59.975 55.0 5.73 8.71 35.83 3.86 R
4455 5185 0.723981 GTTGCAGGAGCGCTAAAGAG 59.276 55.0 11.50 0.00 46.23 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 6.128090 CCGAGACACTAAATATAGCCGACATA 60.128 42.308 0.00 0.00 31.96 2.29
52 54 3.057104 CCGACATAGTGTACAGTTGGACA 60.057 47.826 8.85 0.00 37.67 4.02
57 59 2.116238 AGTGTACAGTTGGACACAGGT 58.884 47.619 25.09 6.27 46.83 4.00
90 92 2.286418 CCGATTTAAATGCGTCAGAGCC 60.286 50.000 5.17 0.00 36.02 4.70
149 168 3.655211 CCACCCTTGAGCCTGCCT 61.655 66.667 0.00 0.00 0.00 4.75
150 169 2.360852 CACCCTTGAGCCTGCCTG 60.361 66.667 0.00 0.00 0.00 4.85
151 170 4.357279 ACCCTTGAGCCTGCCTGC 62.357 66.667 0.00 0.00 0.00 4.85
252 272 1.937359 CTCGTAACGCAAGCACTTTG 58.063 50.000 0.00 0.00 45.62 2.77
262 285 1.756538 CAAGCACTTTGGTTTGTCCCT 59.243 47.619 0.00 0.00 35.69 4.20
265 288 1.754226 GCACTTTGGTTTGTCCCTTCA 59.246 47.619 0.00 0.00 34.77 3.02
316 340 3.405592 GACGCTATGGACGGACGCA 62.406 63.158 0.00 0.00 34.00 5.24
317 341 2.027605 CGCTATGGACGGACGCAT 59.972 61.111 0.00 0.00 0.00 4.73
318 342 2.016704 CGCTATGGACGGACGCATC 61.017 63.158 0.00 0.00 0.00 3.91
319 343 1.067416 GCTATGGACGGACGCATCA 59.933 57.895 0.00 0.00 0.00 3.07
320 344 1.215655 GCTATGGACGGACGCATCAC 61.216 60.000 0.00 0.00 0.00 3.06
370 394 1.893786 GGCACACCCAACAACACAA 59.106 52.632 0.00 0.00 0.00 3.33
371 395 0.179113 GGCACACCCAACAACACAAG 60.179 55.000 0.00 0.00 0.00 3.16
372 396 0.179113 GCACACCCAACAACACAAGG 60.179 55.000 0.00 0.00 0.00 3.61
439 463 1.391157 AAAAGCAGCTTTGACGGCCA 61.391 50.000 21.30 0.00 33.64 5.36
440 464 1.181098 AAAGCAGCTTTGACGGCCAT 61.181 50.000 19.98 0.00 31.98 4.40
441 465 1.589716 AAGCAGCTTTGACGGCCATC 61.590 55.000 0.21 0.00 0.00 3.51
442 466 3.056313 GCAGCTTTGACGGCCATCC 62.056 63.158 2.24 0.00 0.00 3.51
443 467 1.377725 CAGCTTTGACGGCCATCCT 60.378 57.895 2.24 0.00 0.00 3.24
444 468 0.107703 CAGCTTTGACGGCCATCCTA 60.108 55.000 2.24 0.00 0.00 2.94
445 469 0.618458 AGCTTTGACGGCCATCCTAA 59.382 50.000 2.24 0.00 0.00 2.69
446 470 1.212935 AGCTTTGACGGCCATCCTAAT 59.787 47.619 2.24 0.00 0.00 1.73
447 471 1.604278 GCTTTGACGGCCATCCTAATC 59.396 52.381 2.24 0.00 0.00 1.75
448 472 1.867233 CTTTGACGGCCATCCTAATCG 59.133 52.381 2.24 0.00 0.00 3.34
449 473 0.531974 TTGACGGCCATCCTAATCGC 60.532 55.000 2.24 0.00 0.00 4.58
450 474 1.668151 GACGGCCATCCTAATCGCC 60.668 63.158 2.24 0.00 35.94 5.54
454 478 1.003233 GCCATCCTAATCGCCCTCC 60.003 63.158 0.00 0.00 0.00 4.30
456 480 0.987294 CCATCCTAATCGCCCTCCAT 59.013 55.000 0.00 0.00 0.00 3.41
466 531 0.602638 CGCCCTCCATAGCGCATTTA 60.603 55.000 11.47 0.00 46.50 1.40
472 565 2.607635 CTCCATAGCGCATTTACACGTT 59.392 45.455 11.47 0.00 0.00 3.99
490 583 0.899717 TTACACTAGCCCGTTCCCGT 60.900 55.000 0.00 0.00 0.00 5.28
491 584 1.597797 TACACTAGCCCGTTCCCGTG 61.598 60.000 0.00 0.00 0.00 4.94
492 585 4.078516 ACTAGCCCGTTCCCGTGC 62.079 66.667 0.00 0.00 37.76 5.34
493 586 4.832608 CTAGCCCGTTCCCGTGCC 62.833 72.222 0.00 0.00 38.29 5.01
510 603 1.455959 CCCGGACCCCAAACACAAA 60.456 57.895 0.73 0.00 0.00 2.83
511 604 1.737201 CCGGACCCCAAACACAAAC 59.263 57.895 0.00 0.00 0.00 2.93
512 605 0.753848 CCGGACCCCAAACACAAACT 60.754 55.000 0.00 0.00 0.00 2.66
513 606 0.383949 CGGACCCCAAACACAAACTG 59.616 55.000 0.00 0.00 0.00 3.16
514 607 1.480789 GGACCCCAAACACAAACTGT 58.519 50.000 0.00 0.00 32.89 3.55
536 629 6.487828 TGTACTGTACTGTATCTTGTAGGGT 58.512 40.000 17.98 0.00 0.00 4.34
547 640 0.472352 TTGTAGGGTTGGGTCCTCGT 60.472 55.000 0.00 0.00 35.92 4.18
548 641 0.409092 TGTAGGGTTGGGTCCTCGTA 59.591 55.000 0.00 0.00 35.92 3.43
550 643 0.032813 TAGGGTTGGGTCCTCGTAGG 60.033 60.000 0.00 0.00 35.92 3.18
551 644 1.611556 GGGTTGGGTCCTCGTAGGT 60.612 63.158 0.00 0.00 36.53 3.08
553 646 1.509923 GTTGGGTCCTCGTAGGTCG 59.490 63.158 0.00 0.00 36.53 4.79
554 647 1.075482 TTGGGTCCTCGTAGGTCGT 59.925 57.895 0.00 0.00 40.80 4.34
555 648 0.327924 TTGGGTCCTCGTAGGTCGTA 59.672 55.000 0.00 0.00 40.80 3.43
556 649 0.107508 TGGGTCCTCGTAGGTCGTAG 60.108 60.000 0.00 0.00 40.80 3.51
557 650 1.443322 GGGTCCTCGTAGGTCGTAGC 61.443 65.000 0.00 0.00 40.80 3.58
568 661 1.537638 AGGTCGTAGCAGCTATCATCG 59.462 52.381 5.14 4.60 0.00 3.84
686 801 1.443872 GTACGTGCACTGACTCGGG 60.444 63.158 16.19 0.00 0.00 5.14
687 802 1.601477 TACGTGCACTGACTCGGGA 60.601 57.895 16.19 0.00 0.00 5.14
688 803 0.963856 TACGTGCACTGACTCGGGAT 60.964 55.000 16.19 0.00 0.00 3.85
689 804 1.079819 CGTGCACTGACTCGGGATT 60.080 57.895 16.19 0.00 0.00 3.01
739 865 2.227149 GTGACCAACGGATTGTTTACCC 59.773 50.000 0.00 0.00 39.29 3.69
744 870 3.126729 CGGATTGTTTACCCGTCGT 57.873 52.632 0.00 0.00 38.55 4.34
993 1129 2.109799 CCTCGCCTTGATCCGCAT 59.890 61.111 0.00 0.00 0.00 4.73
1090 1235 2.567049 CCAAGAAGCAGCAGCAGC 59.433 61.111 3.17 0.46 45.49 5.25
1091 1236 2.265904 CCAAGAAGCAGCAGCAGCA 61.266 57.895 12.92 0.00 45.49 4.41
1092 1237 1.210413 CAAGAAGCAGCAGCAGCAG 59.790 57.895 12.92 0.00 45.49 4.24
1208 1353 1.874345 GACTTCGAGCGGGACTCCAA 61.874 60.000 0.00 0.00 43.01 3.53
1220 1365 2.162921 GACTCCAACGACGACGACGA 62.163 60.000 25.15 2.84 42.66 4.20
1323 1468 2.490217 CGCCTAGGTGAGACACGG 59.510 66.667 17.96 0.00 34.83 4.94
1324 1469 2.184579 GCCTAGGTGAGACACGGC 59.815 66.667 11.31 0.00 34.83 5.68
1360 1505 2.569404 TGCCTTCCTCCTCTTCTCTTTC 59.431 50.000 0.00 0.00 0.00 2.62
1361 1506 2.093181 GCCTTCCTCCTCTTCTCTTTCC 60.093 54.545 0.00 0.00 0.00 3.13
1379 1524 9.609346 TCTCTTTCCCTTTATTTATTTACGAGG 57.391 33.333 0.00 0.00 0.00 4.63
1420 1571 1.210545 TTTGCGTCGACGTTGAGGAC 61.211 55.000 35.48 19.31 42.22 3.85
1422 1573 1.659335 GCGTCGACGTTGAGGACAA 60.659 57.895 35.48 0.00 42.22 3.18
1453 1607 2.213499 CAGTATCTGCCCAACGAATCC 58.787 52.381 0.00 0.00 0.00 3.01
1495 1652 8.208903 GCCTGGTACTAGATTTAATCTTTGGTA 58.791 37.037 13.00 10.71 40.76 3.25
1502 1679 9.225682 ACTAGATTTAATCTTTGGTATGAGGGA 57.774 33.333 13.00 0.00 40.76 4.20
1530 1711 3.738982 TCGCTTGTTTCTCCAAATCTGA 58.261 40.909 0.00 0.00 0.00 3.27
1616 1798 9.353999 GAACCTGCTATTTATTTTTAACACTGG 57.646 33.333 0.00 0.00 0.00 4.00
1618 1800 9.084533 ACCTGCTATTTATTTTTAACACTGGAA 57.915 29.630 0.00 0.00 0.00 3.53
1696 1878 3.138283 TGGGGGATTAATGAGCTTCGAAT 59.862 43.478 0.00 0.00 0.00 3.34
1725 1907 4.279671 TGAGTTTTTGTGGTTGTTGAGTGT 59.720 37.500 0.00 0.00 0.00 3.55
1824 2035 3.652055 ACCTATCTCTGGTGATGCTCTT 58.348 45.455 0.00 0.00 36.30 2.85
1829 2040 7.039363 ACCTATCTCTGGTGATGCTCTTATAAC 60.039 40.741 0.00 0.00 36.30 1.89
1836 2047 6.653020 TGGTGATGCTCTTATAACATGTCTT 58.347 36.000 0.00 0.00 0.00 3.01
1845 2056 9.982651 GCTCTTATAACATGTCTTTCTATGGTA 57.017 33.333 0.00 0.00 31.63 3.25
1913 2124 5.533528 TCATTGATGTATTGCCATCTTGAGG 59.466 40.000 0.00 0.00 41.47 3.86
1988 2362 8.603242 TTGTACTACCTCATTTCAGTTTCTTC 57.397 34.615 0.00 0.00 0.00 2.87
1992 2366 7.162082 ACTACCTCATTTCAGTTTCTTCGATT 58.838 34.615 0.00 0.00 0.00 3.34
1996 2370 7.824289 ACCTCATTTCAGTTTCTTCGATTCATA 59.176 33.333 0.00 0.00 0.00 2.15
2027 2401 8.566008 AAAAGAATCTTGTGACTTCAAATTCG 57.434 30.769 0.00 0.00 0.00 3.34
2028 2402 5.693814 AGAATCTTGTGACTTCAAATTCGC 58.306 37.500 0.00 0.00 0.00 4.70
2029 2403 5.239306 AGAATCTTGTGACTTCAAATTCGCA 59.761 36.000 0.00 0.00 0.00 5.10
2030 2404 5.633830 ATCTTGTGACTTCAAATTCGCAT 57.366 34.783 0.00 0.00 32.46 4.73
2031 2405 5.034554 TCTTGTGACTTCAAATTCGCATC 57.965 39.130 0.00 0.00 32.46 3.91
2032 2406 4.514816 TCTTGTGACTTCAAATTCGCATCA 59.485 37.500 0.00 0.00 32.46 3.07
2033 2407 4.408993 TGTGACTTCAAATTCGCATCAG 57.591 40.909 0.00 0.00 0.00 2.90
2034 2408 3.166657 GTGACTTCAAATTCGCATCAGC 58.833 45.455 0.00 0.00 37.42 4.26
2035 2409 3.076621 TGACTTCAAATTCGCATCAGCT 58.923 40.909 0.00 0.00 39.10 4.24
2036 2410 3.503363 TGACTTCAAATTCGCATCAGCTT 59.497 39.130 0.00 0.00 39.10 3.74
2037 2411 4.694982 TGACTTCAAATTCGCATCAGCTTA 59.305 37.500 0.00 0.00 39.10 3.09
2038 2412 5.181056 TGACTTCAAATTCGCATCAGCTTAA 59.819 36.000 0.00 0.00 39.10 1.85
2039 2413 6.127925 TGACTTCAAATTCGCATCAGCTTAAT 60.128 34.615 0.00 0.00 39.10 1.40
2040 2414 6.624423 ACTTCAAATTCGCATCAGCTTAATT 58.376 32.000 0.00 0.00 39.10 1.40
2041 2415 6.749118 ACTTCAAATTCGCATCAGCTTAATTC 59.251 34.615 0.00 0.00 39.10 2.17
2042 2416 6.441093 TCAAATTCGCATCAGCTTAATTCT 57.559 33.333 0.00 0.00 39.10 2.40
2043 2417 6.855836 TCAAATTCGCATCAGCTTAATTCTT 58.144 32.000 0.00 0.00 39.10 2.52
2044 2418 7.315142 TCAAATTCGCATCAGCTTAATTCTTT 58.685 30.769 0.00 0.00 39.10 2.52
2045 2419 7.814107 TCAAATTCGCATCAGCTTAATTCTTTT 59.186 29.630 0.00 0.00 39.10 2.27
2046 2420 7.746526 AATTCGCATCAGCTTAATTCTTTTC 57.253 32.000 0.00 0.00 39.10 2.29
2047 2421 5.235305 TCGCATCAGCTTAATTCTTTTCC 57.765 39.130 0.00 0.00 39.10 3.13
2048 2422 4.096382 TCGCATCAGCTTAATTCTTTTCCC 59.904 41.667 0.00 0.00 39.10 3.97
2049 2423 4.686972 GCATCAGCTTAATTCTTTTCCCC 58.313 43.478 0.00 0.00 37.91 4.81
2050 2424 4.442052 GCATCAGCTTAATTCTTTTCCCCC 60.442 45.833 0.00 0.00 37.91 5.40
2064 2438 4.637771 CCCCCGAGGAAACACATC 57.362 61.111 0.00 0.00 38.24 3.06
2065 2439 1.682849 CCCCCGAGGAAACACATCA 59.317 57.895 0.00 0.00 38.24 3.07
2066 2440 0.392998 CCCCCGAGGAAACACATCAG 60.393 60.000 0.00 0.00 38.24 2.90
2067 2441 1.026718 CCCCGAGGAAACACATCAGC 61.027 60.000 0.00 0.00 33.47 4.26
2068 2442 1.026718 CCCGAGGAAACACATCAGCC 61.027 60.000 0.00 0.00 0.00 4.85
2069 2443 0.036010 CCGAGGAAACACATCAGCCT 60.036 55.000 0.00 0.00 0.00 4.58
2070 2444 1.207089 CCGAGGAAACACATCAGCCTA 59.793 52.381 0.00 0.00 0.00 3.93
2071 2445 2.354704 CCGAGGAAACACATCAGCCTAA 60.355 50.000 0.00 0.00 0.00 2.69
2072 2446 3.535561 CGAGGAAACACATCAGCCTAAT 58.464 45.455 0.00 0.00 0.00 1.73
2073 2447 3.941483 CGAGGAAACACATCAGCCTAATT 59.059 43.478 0.00 0.00 0.00 1.40
2074 2448 4.034510 CGAGGAAACACATCAGCCTAATTC 59.965 45.833 0.00 0.00 0.00 2.17
2075 2449 5.184892 AGGAAACACATCAGCCTAATTCT 57.815 39.130 0.00 0.00 0.00 2.40
2076 2450 4.946157 AGGAAACACATCAGCCTAATTCTG 59.054 41.667 0.00 0.00 0.00 3.02
2077 2451 4.943705 GGAAACACATCAGCCTAATTCTGA 59.056 41.667 0.00 0.00 43.79 3.27
2086 2460 6.983906 TCAGCCTAATTCTGATGTAGATGA 57.016 37.500 0.00 0.00 35.81 2.92
2087 2461 7.365497 TCAGCCTAATTCTGATGTAGATGAA 57.635 36.000 0.00 0.00 35.81 2.57
2088 2462 7.795047 TCAGCCTAATTCTGATGTAGATGAAA 58.205 34.615 0.00 0.00 35.81 2.69
2089 2463 8.267183 TCAGCCTAATTCTGATGTAGATGAAAA 58.733 33.333 0.00 0.00 35.81 2.29
2090 2464 8.341173 CAGCCTAATTCTGATGTAGATGAAAAC 58.659 37.037 0.00 0.00 34.80 2.43
2091 2465 8.049117 AGCCTAATTCTGATGTAGATGAAAACA 58.951 33.333 0.00 0.00 34.80 2.83
2092 2466 8.125448 GCCTAATTCTGATGTAGATGAAAACAC 58.875 37.037 0.00 0.00 34.80 3.32
2093 2467 9.166173 CCTAATTCTGATGTAGATGAAAACACA 57.834 33.333 0.00 0.00 34.80 3.72
2107 2481 8.153550 AGATGAAAACACATCATAGATACTCCC 58.846 37.037 0.00 0.00 46.11 4.30
2108 2482 7.437713 TGAAAACACATCATAGATACTCCCT 57.562 36.000 0.00 0.00 0.00 4.20
2109 2483 7.500992 TGAAAACACATCATAGATACTCCCTC 58.499 38.462 0.00 0.00 0.00 4.30
2110 2484 6.426646 AAACACATCATAGATACTCCCTCC 57.573 41.667 0.00 0.00 0.00 4.30
2111 2485 4.082845 ACACATCATAGATACTCCCTCCG 58.917 47.826 0.00 0.00 0.00 4.63
2112 2486 4.082845 CACATCATAGATACTCCCTCCGT 58.917 47.826 0.00 0.00 0.00 4.69
2113 2487 4.156922 CACATCATAGATACTCCCTCCGTC 59.843 50.000 0.00 0.00 0.00 4.79
2114 2488 3.436577 TCATAGATACTCCCTCCGTCC 57.563 52.381 0.00 0.00 0.00 4.79
2115 2489 2.085320 CATAGATACTCCCTCCGTCCG 58.915 57.143 0.00 0.00 0.00 4.79
2116 2490 1.427809 TAGATACTCCCTCCGTCCGA 58.572 55.000 0.00 0.00 0.00 4.55
2117 2491 0.549950 AGATACTCCCTCCGTCCGAA 59.450 55.000 0.00 0.00 0.00 4.30
2118 2492 1.064166 AGATACTCCCTCCGTCCGAAA 60.064 52.381 0.00 0.00 0.00 3.46
2119 2493 1.753073 GATACTCCCTCCGTCCGAAAA 59.247 52.381 0.00 0.00 0.00 2.29
2120 2494 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
2121 2495 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2122 2496 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2123 2497 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2124 2498 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2125 2499 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2126 2500 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2127 2501 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2128 2502 3.368116 CCTCCGTCCGAAAATACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
2129 2503 4.243270 CTCCGTCCGAAAATACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
2130 2504 4.240096 TCCGTCCGAAAATACTTGTCTTC 58.760 43.478 0.00 0.00 0.00 2.87
2131 2505 3.991773 CCGTCCGAAAATACTTGTCTTCA 59.008 43.478 0.00 0.00 0.00 3.02
2132 2506 4.449743 CCGTCCGAAAATACTTGTCTTCAA 59.550 41.667 0.00 0.00 0.00 2.69
2133 2507 5.049954 CCGTCCGAAAATACTTGTCTTCAAA 60.050 40.000 0.00 0.00 32.87 2.69
2134 2508 6.423862 CGTCCGAAAATACTTGTCTTCAAAA 58.576 36.000 0.00 0.00 32.87 2.44
2135 2509 7.075741 CGTCCGAAAATACTTGTCTTCAAAAT 58.924 34.615 0.00 0.00 32.87 1.82
2136 2510 7.059488 CGTCCGAAAATACTTGTCTTCAAAATG 59.941 37.037 0.00 0.00 32.87 2.32
2137 2511 7.326063 GTCCGAAAATACTTGTCTTCAAAATGG 59.674 37.037 0.00 0.00 32.87 3.16
2138 2512 7.229707 TCCGAAAATACTTGTCTTCAAAATGGA 59.770 33.333 0.00 0.00 32.87 3.41
2139 2513 7.326063 CCGAAAATACTTGTCTTCAAAATGGAC 59.674 37.037 0.00 0.00 32.87 4.02
2140 2514 7.860373 CGAAAATACTTGTCTTCAAAATGGACA 59.140 33.333 0.00 0.00 38.07 4.02
2141 2515 9.528018 GAAAATACTTGTCTTCAAAATGGACAA 57.472 29.630 0.00 0.00 44.35 3.18
2142 2516 9.883142 AAAATACTTGTCTTCAAAATGGACAAA 57.117 25.926 8.67 0.00 45.31 2.83
2143 2517 9.883142 AAATACTTGTCTTCAAAATGGACAAAA 57.117 25.926 8.67 2.16 45.31 2.44
2144 2518 9.883142 AATACTTGTCTTCAAAATGGACAAAAA 57.117 25.926 8.67 1.88 45.31 1.94
2145 2519 7.832503 ACTTGTCTTCAAAATGGACAAAAAG 57.167 32.000 8.67 1.52 45.31 2.27
2146 2520 6.818142 ACTTGTCTTCAAAATGGACAAAAAGG 59.182 34.615 8.67 1.48 45.31 3.11
2147 2521 5.669477 TGTCTTCAAAATGGACAAAAAGGG 58.331 37.500 0.00 0.00 37.10 3.95
2148 2522 5.423610 TGTCTTCAAAATGGACAAAAAGGGA 59.576 36.000 0.00 0.00 37.10 4.20
2149 2523 6.099557 TGTCTTCAAAATGGACAAAAAGGGAT 59.900 34.615 0.00 0.00 37.10 3.85
2150 2524 6.424812 GTCTTCAAAATGGACAAAAAGGGATG 59.575 38.462 0.00 0.00 0.00 3.51
2151 2525 4.640364 TCAAAATGGACAAAAAGGGATGC 58.360 39.130 0.00 0.00 0.00 3.91
2152 2526 4.102210 TCAAAATGGACAAAAAGGGATGCA 59.898 37.500 0.00 0.00 0.00 3.96
2153 2527 4.914177 AAATGGACAAAAAGGGATGCAT 57.086 36.364 0.00 0.00 0.00 3.96
2154 2528 3.899052 ATGGACAAAAAGGGATGCATG 57.101 42.857 2.46 0.00 0.00 4.06
2155 2529 2.607499 TGGACAAAAAGGGATGCATGT 58.393 42.857 2.46 0.00 0.00 3.21
2156 2530 3.772387 TGGACAAAAAGGGATGCATGTA 58.228 40.909 2.46 0.00 0.00 2.29
2157 2531 4.155709 TGGACAAAAAGGGATGCATGTAA 58.844 39.130 2.46 0.00 0.00 2.41
2158 2532 4.590647 TGGACAAAAAGGGATGCATGTAAA 59.409 37.500 2.46 0.00 0.00 2.01
2159 2533 5.070981 TGGACAAAAAGGGATGCATGTAAAA 59.929 36.000 2.46 0.00 0.00 1.52
2160 2534 5.408299 GGACAAAAAGGGATGCATGTAAAAC 59.592 40.000 2.46 0.00 0.00 2.43
2161 2535 6.173427 ACAAAAAGGGATGCATGTAAAACT 57.827 33.333 2.46 0.00 0.00 2.66
2162 2536 7.296628 ACAAAAAGGGATGCATGTAAAACTA 57.703 32.000 2.46 0.00 0.00 2.24
2163 2537 7.731054 ACAAAAAGGGATGCATGTAAAACTAA 58.269 30.769 2.46 0.00 0.00 2.24
2164 2538 7.872483 ACAAAAAGGGATGCATGTAAAACTAAG 59.128 33.333 2.46 0.00 0.00 2.18
2165 2539 7.775053 AAAAGGGATGCATGTAAAACTAAGA 57.225 32.000 2.46 0.00 0.00 2.10
2166 2540 7.961326 AAAGGGATGCATGTAAAACTAAGAT 57.039 32.000 2.46 0.00 0.00 2.40
2167 2541 9.474313 AAAAGGGATGCATGTAAAACTAAGATA 57.526 29.630 2.46 0.00 0.00 1.98
2168 2542 8.451908 AAGGGATGCATGTAAAACTAAGATAC 57.548 34.615 2.46 0.00 0.00 2.24
2169 2543 7.573710 AGGGATGCATGTAAAACTAAGATACA 58.426 34.615 2.46 0.00 34.35 2.29
2170 2544 8.220559 AGGGATGCATGTAAAACTAAGATACAT 58.779 33.333 2.46 0.00 40.04 2.29
2171 2545 8.507249 GGGATGCATGTAAAACTAAGATACATC 58.493 37.037 2.46 0.00 37.99 3.06
2172 2546 9.277783 GGATGCATGTAAAACTAAGATACATCT 57.722 33.333 2.46 0.00 37.99 2.90
2235 2740 8.841444 ATGAAAACATATTCTTAACGACATGC 57.159 30.769 0.00 0.00 0.00 4.06
2274 2798 7.812306 TCATGGATATCATATTGCTGGATGAT 58.188 34.615 4.83 11.03 43.55 2.45
2295 2819 9.440773 GATGATACTTCAAACATGATAGCCATA 57.559 33.333 0.00 0.00 34.96 2.74
2338 2867 9.026121 ACTATCTATTGCTAATCGTAGACCAAT 57.974 33.333 0.00 0.00 42.51 3.16
2345 2881 8.902540 TTGCTAATCGTAGACCAATCAATTAT 57.097 30.769 0.00 0.00 42.51 1.28
2407 2946 7.520451 TGTCTGTTACTTATATATGTCCGCT 57.480 36.000 4.64 0.00 0.00 5.52
2418 2957 2.751166 ATGTCCGCTATAGGCATGTC 57.249 50.000 1.04 0.00 41.91 3.06
2438 2994 5.806818 TGTCGTTCCCAAGGTTAATTGATA 58.193 37.500 0.00 0.00 31.55 2.15
2447 3003 9.403583 TCCCAAGGTTAATTGATATTTCTACAC 57.596 33.333 0.00 0.00 31.55 2.90
2459 3015 9.626045 TTGATATTTCTACACTATGCTCATACG 57.374 33.333 0.00 0.00 0.00 3.06
2464 3020 7.520119 TTCTACACTATGCTCATACGTTTTG 57.480 36.000 0.00 0.00 0.00 2.44
2513 3075 5.763204 GTCAGAAGGAAACACAATTCTGGTA 59.237 40.000 12.40 0.00 45.55 3.25
2517 3079 7.004086 AGAAGGAAACACAATTCTGGTATCAA 58.996 34.615 0.00 0.00 31.00 2.57
2519 3081 6.068010 AGGAAACACAATTCTGGTATCAACA 58.932 36.000 0.00 0.00 0.00 3.33
2538 3100 8.925161 ATCAACATTTTCATTACCGGTTAATG 57.075 30.769 15.04 19.43 46.06 1.90
2539 3101 6.809196 TCAACATTTTCATTACCGGTTAATGC 59.191 34.615 15.04 0.00 44.83 3.56
2559 3121 6.916360 ATGCTCTCCAATTTAACTTTCCAA 57.084 33.333 0.00 0.00 0.00 3.53
2600 3162 7.454260 AGAGATGTATTTTGGAACTGGAAAC 57.546 36.000 0.00 0.00 0.00 2.78
2601 3163 7.234355 AGAGATGTATTTTGGAACTGGAAACT 58.766 34.615 0.00 0.00 0.00 2.66
2664 3263 5.509498 TGGGACATAAGGAAGAATTTCAGG 58.491 41.667 0.00 0.00 34.90 3.86
2689 3294 7.148407 GGTCAAACATATGAATTCGTCTCTTGT 60.148 37.037 10.38 2.06 0.00 3.16
2706 3311 8.021973 CGTCTCTTGTACAACTAGAGTAAACAT 58.978 37.037 18.27 0.00 44.60 2.71
2791 3398 9.683069 ATTCTGAATGATATTATTTTCGGCAAC 57.317 29.630 1.31 0.00 0.00 4.17
2795 3402 8.849168 TGAATGATATTATTTTCGGCAACTCAT 58.151 29.630 0.00 0.00 0.00 2.90
2899 3520 0.040058 TGATGGACCTGCTGCCAAAT 59.960 50.000 0.00 0.00 37.78 2.32
2900 3521 0.743097 GATGGACCTGCTGCCAAATC 59.257 55.000 0.00 0.00 37.78 2.17
2904 3525 0.524862 GACCTGCTGCCAAATCAGTG 59.475 55.000 0.00 0.00 36.49 3.66
3048 3669 1.900498 GGCAGCCAGGGCATATGAC 60.900 63.158 13.63 2.47 44.88 3.06
3102 3723 3.760684 CCAAGGTCAATTTTCCTGAGGAG 59.239 47.826 0.00 0.00 34.07 3.69
3175 3796 1.984570 CTGGCTCCACCTCCGAAGA 60.985 63.158 0.00 0.00 40.22 2.87
3192 3813 3.453070 GACCTGCGAGGATGAGCCC 62.453 68.421 8.91 0.00 37.67 5.19
3201 3822 2.570135 GAGGATGAGCCCTTCAATCAC 58.430 52.381 0.00 0.00 39.77 3.06
3237 3858 4.545610 ACAATGATTTGTTCGCGATGTTT 58.454 34.783 10.88 0.00 43.57 2.83
3297 3918 2.348472 AGTGTGGATTCCCTTCTTCCA 58.652 47.619 0.00 0.00 37.20 3.53
3372 3993 1.206371 AGCAGCAATTCATTTGGCTCC 59.794 47.619 0.00 0.00 35.75 4.70
3436 4057 1.588404 CATCCGTCTTCGTTCCGAATG 59.412 52.381 0.00 0.00 44.85 2.67
3437 4058 0.734942 TCCGTCTTCGTTCCGAATGC 60.735 55.000 0.00 0.00 44.85 3.56
3438 4059 0.736325 CCGTCTTCGTTCCGAATGCT 60.736 55.000 0.00 0.00 44.85 3.79
3513 4137 5.053978 AGAGAATGAGGAACAACTTTGGT 57.946 39.130 0.00 0.00 0.00 3.67
3516 4140 5.690865 AGAATGAGGAACAACTTTGGTGTA 58.309 37.500 0.00 0.00 0.00 2.90
3615 4239 3.815569 GAGCAGCTCGGACGGATCG 62.816 68.421 6.67 0.00 0.00 3.69
3681 4305 0.985490 GTGGGGATCTCTGGAGCCTT 60.985 60.000 0.00 0.00 46.39 4.35
3711 4335 1.453745 CATGGCGGCTGGTGGTTAT 60.454 57.895 11.43 0.00 0.00 1.89
3715 4339 0.751643 GGCGGCTGGTGGTTATTGAT 60.752 55.000 0.00 0.00 0.00 2.57
3792 4417 3.762407 TGGTTTCGTTCTCTTCCATGA 57.238 42.857 0.00 0.00 0.00 3.07
3801 4426 5.091431 CGTTCTCTTCCATGATTTTCTTGC 58.909 41.667 0.00 0.00 0.00 4.01
3845 4507 8.173542 TCTTAAATGGTCTTAACTTTGGGTTC 57.826 34.615 0.00 0.00 39.17 3.62
3882 4551 2.159282 GCATGTGGCCAAGATGAAGAAG 60.159 50.000 24.14 3.16 36.11 2.85
3901 4570 3.376078 GGTGGTGCATGTGGCCAG 61.376 66.667 5.11 0.00 43.89 4.85
3912 4582 1.891933 TGTGGCCAGGATGAAGGATA 58.108 50.000 5.11 0.00 39.69 2.59
3924 4594 4.445448 GGATGAAGGATAGGTTGCATCTGT 60.445 45.833 0.00 0.00 34.22 3.41
3929 4599 4.392940 AGGATAGGTTGCATCTGTTATGC 58.607 43.478 3.05 3.05 44.76 3.14
3932 4602 5.278169 GGATAGGTTGCATCTGTTATGCTTG 60.278 44.000 10.95 0.00 44.79 4.01
4102 4775 4.758674 GTCATATGCCTGATGTAATGTGCT 59.241 41.667 0.00 0.00 0.00 4.40
4177 4851 0.591170 GGCGTTTTGCTGAGTGCTTA 59.409 50.000 0.00 0.00 45.43 3.09
4190 4864 2.739379 GAGTGCTTAGCTTTCGCTTTCT 59.261 45.455 5.60 0.00 46.47 2.52
4194 4868 2.480419 GCTTAGCTTTCGCTTTCTGTGA 59.520 45.455 0.00 0.00 46.47 3.58
4196 4870 2.533266 AGCTTTCGCTTTCTGTGAGA 57.467 45.000 0.00 0.00 46.47 3.27
4236 4910 5.982465 GATCTAAGACCAGATCAACAAGC 57.018 43.478 7.98 0.00 46.84 4.01
4243 4917 4.223700 AGACCAGATCAACAAGCTCACATA 59.776 41.667 0.00 0.00 0.00 2.29
4251 4925 8.627403 AGATCAACAAGCTCACATATTAAATGG 58.373 33.333 0.00 0.00 0.00 3.16
4296 4975 3.610040 TGAGAACGATTAGTGCCATGT 57.390 42.857 0.00 0.00 0.00 3.21
4323 5002 4.402474 AGCATTAGGTTTTGATTGGTAGGC 59.598 41.667 0.00 0.00 0.00 3.93
4333 5012 2.137177 ATTGGTAGGCGGCCACACTT 62.137 55.000 23.09 1.81 35.46 3.16
4345 5060 2.918571 CACACTTGTGGACGCAGAT 58.081 52.632 5.72 0.00 42.10 2.90
4346 5061 1.229428 CACACTTGTGGACGCAGATT 58.771 50.000 5.72 0.00 42.10 2.40
4348 5063 2.805671 CACACTTGTGGACGCAGATTAA 59.194 45.455 5.72 0.00 42.10 1.40
4349 5064 3.249799 CACACTTGTGGACGCAGATTAAA 59.750 43.478 5.72 0.00 42.10 1.52
4350 5065 4.072131 ACACTTGTGGACGCAGATTAAAT 58.928 39.130 5.72 0.00 0.00 1.40
4380 5110 0.818296 ACTGTATCTGGGACGAGTGC 59.182 55.000 0.00 0.00 0.00 4.40
4395 5125 2.210116 GAGTGCGACCTGAAAAACTGA 58.790 47.619 0.00 0.00 0.00 3.41
4396 5126 2.808543 GAGTGCGACCTGAAAAACTGAT 59.191 45.455 0.00 0.00 0.00 2.90
4411 5141 9.219603 TGAAAAACTGATTCTAAAGATGATCGT 57.780 29.630 0.00 0.00 0.00 3.73
4455 5185 8.691797 TCCCTGGTTTTGCTTTATTTATCATAC 58.308 33.333 0.00 0.00 0.00 2.39
4457 5187 9.736023 CCTGGTTTTGCTTTATTTATCATACTC 57.264 33.333 0.00 0.00 0.00 2.59
4470 5200 3.717400 TCATACTCTTTAGCGCTCCTG 57.283 47.619 16.34 4.98 0.00 3.86
4527 5265 0.392595 CCTAGGGGAAAAGTCGGCAC 60.393 60.000 0.00 0.00 33.58 5.01
4531 5269 1.524008 GGGGAAAAGTCGGCACCAAG 61.524 60.000 0.00 0.00 0.00 3.61
4624 5369 4.776435 ATAATTTTGGGGAAATGCAGGG 57.224 40.909 0.00 0.00 37.98 4.45
4647 5392 1.417890 CAGGCCGGGTCTAATTCATCT 59.582 52.381 0.00 0.00 0.00 2.90
4653 5398 3.006967 CCGGGTCTAATTCATCTCCGATT 59.993 47.826 0.00 0.00 38.42 3.34
4659 5404 7.334671 GGGTCTAATTCATCTCCGATTATTTCC 59.665 40.741 0.00 0.00 0.00 3.13
4682 5427 2.033448 ATTTGCTTCCGCCACCGA 59.967 55.556 0.00 0.00 36.29 4.69
4693 5438 0.249073 CGCCACCGATCGAGAAATCT 60.249 55.000 18.66 0.00 36.29 2.40
4694 5439 1.001706 CGCCACCGATCGAGAAATCTA 60.002 52.381 18.66 0.00 36.29 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.889829 AGTGTCTCGGTTTCTCTCCTG 59.110 52.381 0.00 0.00 0.00 3.86
4 5 7.592164 GCTATATTTAGTGTCTCGGTTTCTCTC 59.408 40.741 0.00 0.00 0.00 3.20
8 9 5.401674 CGGCTATATTTAGTGTCTCGGTTTC 59.598 44.000 0.00 0.00 0.00 2.78
37 38 2.102588 GACCTGTGTCCAACTGTACACT 59.897 50.000 12.14 0.00 44.99 3.55
52 54 4.778143 GCATTCCGGCCGACCTGT 62.778 66.667 30.73 4.50 0.00 4.00
151 170 3.185299 TACTGTGGCAACCGGTGGG 62.185 63.158 8.52 4.69 40.11 4.61
152 171 1.964373 GTACTGTGGCAACCGGTGG 60.964 63.158 8.52 6.08 0.00 4.61
166 185 4.894114 ACAAAGGTGTCTCTGTAGTGTACT 59.106 41.667 0.00 0.00 29.49 2.73
252 272 2.488153 CGAGGAAATGAAGGGACAAACC 59.512 50.000 0.00 0.00 38.08 3.27
366 390 0.535780 TGCTGCTCCTTGTCCTTGTG 60.536 55.000 0.00 0.00 0.00 3.33
368 392 0.959372 CCTGCTGCTCCTTGTCCTTG 60.959 60.000 0.00 0.00 0.00 3.61
370 394 1.537397 TCCTGCTGCTCCTTGTCCT 60.537 57.895 0.00 0.00 0.00 3.85
371 395 1.078567 CTCCTGCTGCTCCTTGTCC 60.079 63.158 0.00 0.00 0.00 4.02
372 396 1.744741 GCTCCTGCTGCTCCTTGTC 60.745 63.158 0.00 0.00 36.03 3.18
439 463 1.834263 GCTATGGAGGGCGATTAGGAT 59.166 52.381 0.00 0.00 0.00 3.24
440 464 1.267121 GCTATGGAGGGCGATTAGGA 58.733 55.000 0.00 0.00 0.00 2.94
441 465 3.842869 GCTATGGAGGGCGATTAGG 57.157 57.895 0.00 0.00 0.00 2.69
449 473 1.873591 GTGTAAATGCGCTATGGAGGG 59.126 52.381 9.73 0.00 38.65 4.30
450 474 1.526887 CGTGTAAATGCGCTATGGAGG 59.473 52.381 9.73 0.00 0.00 4.30
454 478 4.032445 AGTGTAACGTGTAAATGCGCTATG 59.968 41.667 9.73 0.00 45.86 2.23
456 480 3.577667 AGTGTAACGTGTAAATGCGCTA 58.422 40.909 9.73 0.00 45.86 4.26
466 531 0.675633 AACGGGCTAGTGTAACGTGT 59.324 50.000 0.00 0.00 45.86 4.49
490 583 4.589675 GTGTTTGGGGTCCGGGCA 62.590 66.667 9.07 0.00 0.00 5.36
491 584 4.589675 TGTGTTTGGGGTCCGGGC 62.590 66.667 0.00 0.00 0.00 6.13
492 585 1.455959 TTTGTGTTTGGGGTCCGGG 60.456 57.895 0.00 0.00 0.00 5.73
493 586 0.753848 AGTTTGTGTTTGGGGTCCGG 60.754 55.000 0.00 0.00 0.00 5.14
510 603 6.602406 CCCTACAAGATACAGTACAGTACAGT 59.398 42.308 13.37 13.11 32.89 3.55
511 604 6.602406 ACCCTACAAGATACAGTACAGTACAG 59.398 42.308 13.37 7.52 0.00 2.74
512 605 6.487828 ACCCTACAAGATACAGTACAGTACA 58.512 40.000 13.37 0.00 0.00 2.90
513 606 7.256286 CAACCCTACAAGATACAGTACAGTAC 58.744 42.308 2.05 2.05 0.00 2.73
514 607 6.379133 CCAACCCTACAAGATACAGTACAGTA 59.621 42.308 0.13 0.13 0.00 2.74
536 629 0.327924 TACGACCTACGAGGACCCAA 59.672 55.000 7.76 0.00 45.77 4.12
547 640 2.742589 CGATGATAGCTGCTACGACCTA 59.257 50.000 12.26 0.00 0.00 3.08
548 641 1.537638 CGATGATAGCTGCTACGACCT 59.462 52.381 12.26 0.00 0.00 3.85
550 643 1.068885 AGCGATGATAGCTGCTACGAC 60.069 52.381 12.26 7.37 44.22 4.34
551 644 1.197949 GAGCGATGATAGCTGCTACGA 59.802 52.381 12.26 1.55 46.13 3.43
553 646 2.030363 AGTGAGCGATGATAGCTGCTAC 60.030 50.000 12.26 6.89 46.13 3.58
554 647 2.227626 GAGTGAGCGATGATAGCTGCTA 59.772 50.000 12.40 12.40 46.13 3.49
555 648 1.000385 GAGTGAGCGATGATAGCTGCT 60.000 52.381 4.38 7.57 46.13 4.24
556 649 1.417372 GAGTGAGCGATGATAGCTGC 58.583 55.000 4.38 0.00 46.13 5.25
557 650 1.665448 CCGAGTGAGCGATGATAGCTG 60.665 57.143 4.38 0.00 46.13 4.24
568 661 2.697761 TACGTGCCTCCGAGTGAGC 61.698 63.158 0.00 0.00 39.98 4.26
625 722 3.924073 GCAGTACATTCGTGTGTGTATCA 59.076 43.478 0.00 0.00 33.78 2.15
627 724 4.188247 AGCAGTACATTCGTGTGTGTAT 57.812 40.909 0.00 0.00 33.78 2.29
636 745 4.634184 ACTAGTGGTAGCAGTACATTCG 57.366 45.455 5.35 0.00 0.00 3.34
667 776 1.579932 CCGAGTCAGTGCACGTACT 59.420 57.895 22.17 22.17 0.00 2.73
668 777 1.443872 CCCGAGTCAGTGCACGTAC 60.444 63.158 12.01 13.52 0.00 3.67
679 794 1.468914 GCCAAAGTGAAATCCCGAGTC 59.531 52.381 0.00 0.00 0.00 3.36
686 801 1.978782 CTTTCGCGCCAAAGTGAAATC 59.021 47.619 18.00 0.00 45.72 2.17
687 802 1.606668 TCTTTCGCGCCAAAGTGAAAT 59.393 42.857 23.79 0.00 45.72 2.17
688 803 1.002900 CTCTTTCGCGCCAAAGTGAAA 60.003 47.619 23.79 14.72 45.03 2.69
689 804 0.586319 CTCTTTCGCGCCAAAGTGAA 59.414 50.000 23.79 8.11 38.66 3.18
727 853 1.362768 GGACGACGGGTAAACAATCC 58.637 55.000 0.00 0.00 0.00 3.01
909 1039 2.286523 ACAGTGAAGGAGGAGGCGG 61.287 63.158 0.00 0.00 0.00 6.13
910 1040 1.079543 CACAGTGAAGGAGGAGGCG 60.080 63.158 0.00 0.00 0.00 5.52
911 1041 1.376553 GCACAGTGAAGGAGGAGGC 60.377 63.158 4.15 0.00 0.00 4.70
913 1043 1.079543 CGGCACAGTGAAGGAGGAG 60.080 63.158 4.15 0.00 0.00 3.69
914 1044 3.059982 CGGCACAGTGAAGGAGGA 58.940 61.111 4.15 0.00 0.00 3.71
915 1045 2.743928 GCGGCACAGTGAAGGAGG 60.744 66.667 4.15 0.00 0.00 4.30
1153 1298 3.839432 GTCCTCCTCTTCGGCCGG 61.839 72.222 27.83 10.69 0.00 6.13
1161 1306 1.380650 GGCCTCGAAGTCCTCCTCT 60.381 63.158 0.00 0.00 0.00 3.69
1299 1444 4.051167 TCACCTAGGCGGGTCGGA 62.051 66.667 9.30 0.00 37.52 4.55
1302 1447 1.681327 TGTCTCACCTAGGCGGGTC 60.681 63.158 9.30 0.00 37.52 4.46
1303 1448 1.982938 GTGTCTCACCTAGGCGGGT 60.983 63.158 9.30 0.00 40.73 5.28
1323 1468 0.387239 GGCAAGTTGAATGTGGTCGC 60.387 55.000 7.16 0.00 0.00 5.19
1324 1469 1.238439 AGGCAAGTTGAATGTGGTCG 58.762 50.000 7.16 0.00 0.00 4.79
1360 1505 6.702716 TTGCCCTCGTAAATAAATAAAGGG 57.297 37.500 0.00 0.00 44.02 3.95
1361 1506 8.463607 TCTTTTGCCCTCGTAAATAAATAAAGG 58.536 33.333 0.00 0.00 0.00 3.11
1379 1524 2.125326 GGCGGGGGTATCTTTTGCC 61.125 63.158 0.00 0.00 0.00 4.52
1410 1561 4.073293 AGAACATCTTTGTCCTCAACGT 57.927 40.909 0.00 0.00 34.06 3.99
1420 1571 5.525378 GGGCAGATACTGTAGAACATCTTTG 59.475 44.000 0.00 0.00 33.43 2.77
1422 1573 4.716784 TGGGCAGATACTGTAGAACATCTT 59.283 41.667 0.00 0.00 33.43 2.40
1453 1607 2.825836 GCCCTGCCATCGGAAGTG 60.826 66.667 0.00 0.00 0.00 3.16
1495 1652 6.378280 AGAAACAAGCGAAATTTATCCCTCAT 59.622 34.615 0.00 0.00 0.00 2.90
1502 1679 8.306761 AGATTTGGAGAAACAAGCGAAATTTAT 58.693 29.630 0.00 0.00 0.00 1.40
1530 1711 6.412362 AGGATCTCACGCATTAGAATTAGT 57.588 37.500 0.00 0.00 0.00 2.24
1540 1721 0.678395 CTGGCTAGGATCTCACGCAT 59.322 55.000 0.00 0.00 0.00 4.73
1608 1790 7.522374 GCAAAAACAAAAACATTCCAGTGTTA 58.478 30.769 0.00 0.00 41.22 2.41
1616 1798 6.464519 GGTTTCTCGCAAAAACAAAAACATTC 59.535 34.615 7.59 0.00 38.16 2.67
1618 1800 5.163804 GGGTTTCTCGCAAAAACAAAAACAT 60.164 36.000 7.59 0.00 38.16 2.71
1625 1807 4.985538 TTTAGGGTTTCTCGCAAAAACA 57.014 36.364 7.59 0.00 38.16 2.83
1665 1847 3.461831 TCATTAATCCCCCACCTTACTGG 59.538 47.826 0.00 0.00 42.93 4.00
1696 1878 5.968528 ACAACCACAAAAACTCAACTACA 57.031 34.783 0.00 0.00 0.00 2.74
1725 1907 7.269316 TGATTAGTTATGGAGACGCACAAATA 58.731 34.615 0.00 0.00 0.00 1.40
1913 2124 5.770162 AGGGCAATAAGGCATACATCTAAAC 59.230 40.000 0.00 0.00 46.44 2.01
1969 2343 7.158697 TGAATCGAAGAAACTGAAATGAGGTA 58.841 34.615 0.00 0.00 43.58 3.08
1970 2344 5.997746 TGAATCGAAGAAACTGAAATGAGGT 59.002 36.000 0.00 0.00 43.58 3.85
1972 2346 9.091784 TCTATGAATCGAAGAAACTGAAATGAG 57.908 33.333 0.00 0.00 43.58 2.90
2018 2392 6.855836 AGAATTAAGCTGATGCGAATTTGAA 58.144 32.000 0.00 0.00 45.42 2.69
2026 2400 4.354587 GGGAAAAGAATTAAGCTGATGCG 58.645 43.478 0.00 0.00 45.42 4.73
2027 2401 4.442052 GGGGGAAAAGAATTAAGCTGATGC 60.442 45.833 0.00 0.00 40.05 3.91
2028 2402 5.268118 GGGGGAAAAGAATTAAGCTGATG 57.732 43.478 0.00 0.00 0.00 3.07
2047 2421 0.392998 CTGATGTGTTTCCTCGGGGG 60.393 60.000 0.00 0.00 0.00 5.40
2048 2422 1.026718 GCTGATGTGTTTCCTCGGGG 61.027 60.000 0.00 0.00 0.00 5.73
2049 2423 1.026718 GGCTGATGTGTTTCCTCGGG 61.027 60.000 0.00 0.00 0.00 5.14
2050 2424 0.036010 AGGCTGATGTGTTTCCTCGG 60.036 55.000 0.00 0.00 0.00 4.63
2051 2425 2.672961 TAGGCTGATGTGTTTCCTCG 57.327 50.000 0.00 0.00 0.00 4.63
2052 2426 5.065731 CAGAATTAGGCTGATGTGTTTCCTC 59.934 44.000 0.00 0.00 35.39 3.71
2053 2427 4.946157 CAGAATTAGGCTGATGTGTTTCCT 59.054 41.667 0.00 0.00 35.39 3.36
2054 2428 4.943705 TCAGAATTAGGCTGATGTGTTTCC 59.056 41.667 0.00 0.00 37.46 3.13
2063 2437 6.983906 TCATCTACATCAGAATTAGGCTGA 57.016 37.500 0.00 0.00 45.52 4.26
2064 2438 8.341173 GTTTTCATCTACATCAGAATTAGGCTG 58.659 37.037 0.00 0.00 36.67 4.85
2065 2439 8.049117 TGTTTTCATCTACATCAGAATTAGGCT 58.951 33.333 0.00 0.00 36.67 4.58
2066 2440 8.125448 GTGTTTTCATCTACATCAGAATTAGGC 58.875 37.037 0.00 0.00 36.67 3.93
2067 2441 9.166173 TGTGTTTTCATCTACATCAGAATTAGG 57.834 33.333 0.00 0.00 36.67 2.69
2081 2455 8.153550 GGGAGTATCTATGATGTGTTTTCATCT 58.846 37.037 7.92 0.00 39.16 2.90
2082 2456 8.153550 AGGGAGTATCTATGATGTGTTTTCATC 58.846 37.037 0.00 0.00 39.02 2.92
2083 2457 8.038862 AGGGAGTATCTATGATGTGTTTTCAT 57.961 34.615 0.00 0.00 37.56 2.57
2084 2458 7.419057 GGAGGGAGTATCTATGATGTGTTTTCA 60.419 40.741 0.00 0.00 33.73 2.69
2085 2459 6.931840 GGAGGGAGTATCTATGATGTGTTTTC 59.068 42.308 0.00 0.00 33.73 2.29
2086 2460 6.463049 CGGAGGGAGTATCTATGATGTGTTTT 60.463 42.308 0.00 0.00 33.73 2.43
2087 2461 5.011125 CGGAGGGAGTATCTATGATGTGTTT 59.989 44.000 0.00 0.00 33.73 2.83
2088 2462 4.524714 CGGAGGGAGTATCTATGATGTGTT 59.475 45.833 0.00 0.00 33.73 3.32
2089 2463 4.082845 CGGAGGGAGTATCTATGATGTGT 58.917 47.826 0.00 0.00 33.73 3.72
2090 2464 4.082845 ACGGAGGGAGTATCTATGATGTG 58.917 47.826 0.00 0.00 33.73 3.21
2091 2465 4.337145 GACGGAGGGAGTATCTATGATGT 58.663 47.826 0.00 0.00 33.73 3.06
2092 2466 3.697045 GGACGGAGGGAGTATCTATGATG 59.303 52.174 0.00 0.00 33.73 3.07
2093 2467 3.622704 CGGACGGAGGGAGTATCTATGAT 60.623 52.174 0.00 0.00 33.73 2.45
2094 2468 2.290134 CGGACGGAGGGAGTATCTATGA 60.290 54.545 0.00 0.00 33.73 2.15
2095 2469 2.085320 CGGACGGAGGGAGTATCTATG 58.915 57.143 0.00 0.00 33.73 2.23
2096 2470 1.983691 TCGGACGGAGGGAGTATCTAT 59.016 52.381 0.00 0.00 33.73 1.98
2097 2471 1.427809 TCGGACGGAGGGAGTATCTA 58.572 55.000 0.00 0.00 33.73 1.98
2098 2472 0.549950 TTCGGACGGAGGGAGTATCT 59.450 55.000 0.00 0.00 33.73 1.98
2099 2473 1.396653 TTTCGGACGGAGGGAGTATC 58.603 55.000 0.00 0.00 0.00 2.24
2100 2474 1.856629 TTTTCGGACGGAGGGAGTAT 58.143 50.000 0.00 0.00 0.00 2.12
2101 2475 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
2102 2476 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
2103 2477 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2104 2478 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2105 2479 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2106 2480 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2107 2481 3.846360 AGACAAGTATTTTCGGACGGAG 58.154 45.455 0.00 0.00 0.00 4.63
2108 2482 3.947910 AGACAAGTATTTTCGGACGGA 57.052 42.857 0.00 0.00 0.00 4.69
2109 2483 3.991773 TGAAGACAAGTATTTTCGGACGG 59.008 43.478 0.00 0.00 0.00 4.79
2110 2484 5.585500 TTGAAGACAAGTATTTTCGGACG 57.415 39.130 0.00 0.00 0.00 4.79
2111 2485 7.326063 CCATTTTGAAGACAAGTATTTTCGGAC 59.674 37.037 0.00 0.00 37.32 4.79
2112 2486 7.229707 TCCATTTTGAAGACAAGTATTTTCGGA 59.770 33.333 0.00 0.00 37.32 4.55
2113 2487 7.326063 GTCCATTTTGAAGACAAGTATTTTCGG 59.674 37.037 0.00 0.00 37.32 4.30
2114 2488 7.860373 TGTCCATTTTGAAGACAAGTATTTTCG 59.140 33.333 0.00 0.00 37.58 3.46
2115 2489 9.528018 TTGTCCATTTTGAAGACAAGTATTTTC 57.472 29.630 0.90 0.00 43.60 2.29
2123 2497 6.070538 TCCCTTTTTGTCCATTTTGAAGACAA 60.071 34.615 0.90 0.90 45.99 3.18
2124 2498 5.423610 TCCCTTTTTGTCCATTTTGAAGACA 59.576 36.000 0.00 0.00 38.70 3.41
2125 2499 5.912892 TCCCTTTTTGTCCATTTTGAAGAC 58.087 37.500 0.00 0.00 0.00 3.01
2126 2500 6.523840 CATCCCTTTTTGTCCATTTTGAAGA 58.476 36.000 0.00 0.00 0.00 2.87
2127 2501 5.179929 GCATCCCTTTTTGTCCATTTTGAAG 59.820 40.000 0.00 0.00 0.00 3.02
2128 2502 5.062528 GCATCCCTTTTTGTCCATTTTGAA 58.937 37.500 0.00 0.00 0.00 2.69
2129 2503 4.102210 TGCATCCCTTTTTGTCCATTTTGA 59.898 37.500 0.00 0.00 0.00 2.69
2130 2504 4.387598 TGCATCCCTTTTTGTCCATTTTG 58.612 39.130 0.00 0.00 0.00 2.44
2131 2505 4.703379 TGCATCCCTTTTTGTCCATTTT 57.297 36.364 0.00 0.00 0.00 1.82
2132 2506 4.041938 ACATGCATCCCTTTTTGTCCATTT 59.958 37.500 0.00 0.00 0.00 2.32
2133 2507 3.583966 ACATGCATCCCTTTTTGTCCATT 59.416 39.130 0.00 0.00 0.00 3.16
2134 2508 3.175594 ACATGCATCCCTTTTTGTCCAT 58.824 40.909 0.00 0.00 0.00 3.41
2135 2509 2.607499 ACATGCATCCCTTTTTGTCCA 58.393 42.857 0.00 0.00 0.00 4.02
2136 2510 4.799564 TTACATGCATCCCTTTTTGTCC 57.200 40.909 0.00 0.00 0.00 4.02
2137 2511 6.223120 AGTTTTACATGCATCCCTTTTTGTC 58.777 36.000 0.00 0.00 0.00 3.18
2138 2512 6.173427 AGTTTTACATGCATCCCTTTTTGT 57.827 33.333 0.00 0.00 0.00 2.83
2139 2513 8.087750 TCTTAGTTTTACATGCATCCCTTTTTG 58.912 33.333 0.00 0.00 0.00 2.44
2140 2514 8.189119 TCTTAGTTTTACATGCATCCCTTTTT 57.811 30.769 0.00 0.00 0.00 1.94
2141 2515 7.775053 TCTTAGTTTTACATGCATCCCTTTT 57.225 32.000 0.00 0.00 0.00 2.27
2142 2516 7.961326 ATCTTAGTTTTACATGCATCCCTTT 57.039 32.000 0.00 0.00 0.00 3.11
2143 2517 8.052748 TGTATCTTAGTTTTACATGCATCCCTT 58.947 33.333 0.00 0.00 0.00 3.95
2144 2518 7.573710 TGTATCTTAGTTTTACATGCATCCCT 58.426 34.615 0.00 0.00 0.00 4.20
2145 2519 7.801716 TGTATCTTAGTTTTACATGCATCCC 57.198 36.000 0.00 0.00 0.00 3.85
2146 2520 9.277783 AGATGTATCTTAGTTTTACATGCATCC 57.722 33.333 0.00 0.00 37.31 3.51
2253 2777 9.270640 GAAGTATCATCCAGCAATATGATATCC 57.729 37.037 14.27 6.50 38.02 2.59
2274 2798 9.679661 TTTCTTATGGCTATCATGTTTGAAGTA 57.320 29.630 0.00 0.00 37.30 2.24
2319 2843 7.807977 AATTGATTGGTCTACGATTAGCAAT 57.192 32.000 10.98 10.98 44.19 3.56
2360 2896 6.070538 ACAAGATGCTACTAGGAACAACATCT 60.071 38.462 0.00 0.00 43.32 2.90
2407 2946 2.104111 CCTTGGGAACGACATGCCTATA 59.896 50.000 0.00 0.00 0.00 1.31
2418 2957 7.996385 AGAAATATCAATTAACCTTGGGAACG 58.004 34.615 0.00 0.00 0.00 3.95
2438 2994 8.604035 CAAAACGTATGAGCATAGTGTAGAAAT 58.396 33.333 0.00 0.00 0.00 2.17
2447 3003 6.036470 TGTCTCTCAAAACGTATGAGCATAG 58.964 40.000 20.74 15.06 43.19 2.23
2459 3015 7.227992 GTATGAGCATACTGTCTCTCAAAAC 57.772 40.000 12.21 7.99 40.28 2.43
2574 3136 9.010029 GTTTCCAGTTCCAAAATACATCTCTAA 57.990 33.333 0.00 0.00 0.00 2.10
2627 3190 9.170890 TCCTTATGTCCCATATAAAGACAGATT 57.829 33.333 8.32 0.00 43.30 2.40
2628 3191 8.742125 TCCTTATGTCCCATATAAAGACAGAT 57.258 34.615 8.32 0.00 43.30 2.90
2664 3263 7.743104 ACAAGAGACGAATTCATATGTTTGAC 58.257 34.615 6.22 0.00 0.00 3.18
2706 3311 4.285003 AGTGCACCCATACTAACAGTACAA 59.715 41.667 14.63 0.00 32.84 2.41
2765 3372 9.683069 GTTGCCGAAAATAATATCATTCAGAAT 57.317 29.630 0.00 0.00 0.00 2.40
2770 3377 9.683069 AATGAGTTGCCGAAAATAATATCATTC 57.317 29.630 0.00 0.00 30.10 2.67
2773 3380 8.854979 CAAATGAGTTGCCGAAAATAATATCA 57.145 30.769 0.00 0.00 0.00 2.15
2791 3398 6.595696 TAGGAAACTGGCGTTAGCAAATGAG 61.596 44.000 0.00 0.00 43.85 2.90
2795 3402 3.128852 TAGGAAACTGGCGTTAGCAAA 57.871 42.857 0.00 0.00 43.85 3.68
2803 3410 5.817816 AGATAACTTGAATAGGAAACTGGCG 59.182 40.000 0.00 0.00 43.88 5.69
2872 3493 3.021695 CAGCAGGTCCATCATGTTGAAT 58.978 45.455 5.30 0.00 40.47 2.57
2899 3520 2.686956 TTCCGAACGCGCTTCACTGA 62.687 55.000 5.73 3.95 35.83 3.41
2900 3521 2.215478 CTTCCGAACGCGCTTCACTG 62.215 60.000 5.73 1.66 35.83 3.66
2904 3525 0.025128 GATTCTTCCGAACGCGCTTC 59.975 55.000 5.73 8.71 35.83 3.86
3048 3669 2.817423 GATCTTGCGGGCTTCAGCG 61.817 63.158 0.00 0.00 43.26 5.18
3102 3723 2.147150 GACTTCTGAACAGTTGGAGCC 58.853 52.381 0.00 0.00 0.00 4.70
3175 3796 3.474570 GGGCTCATCCTCGCAGGT 61.475 66.667 2.68 0.00 36.53 4.00
3192 3813 2.235650 TCCTCTGCTCAGGTGATTGAAG 59.764 50.000 1.89 0.00 34.76 3.02
3201 3822 1.829849 TCATTGTCTCCTCTGCTCAGG 59.170 52.381 0.00 0.00 34.40 3.86
3259 3880 0.956633 CTTTCAGCTGGCTTTGCAGA 59.043 50.000 15.13 0.00 0.00 4.26
3297 3918 0.550914 TGGGCACAAGAGGTTTCACT 59.449 50.000 0.00 0.00 0.00 3.41
3360 3981 2.957402 AGTCAGTGGAGCCAAATGAA 57.043 45.000 7.12 0.00 0.00 2.57
3372 3993 0.884704 CGTCCCACCCAAAGTCAGTG 60.885 60.000 0.00 0.00 0.00 3.66
3681 4305 0.179065 CCGCCATGAAGAGCTCATCA 60.179 55.000 22.73 22.73 43.28 3.07
3711 4335 3.213506 CCACACTGACAAGAACCATCAA 58.786 45.455 0.00 0.00 0.00 2.57
3715 4339 1.837439 AGACCACACTGACAAGAACCA 59.163 47.619 0.00 0.00 0.00 3.67
3792 4417 5.752955 ACAGTTGTATTTTGCGCAAGAAAAT 59.247 32.000 23.68 21.09 46.24 1.82
3801 4426 7.672351 TTAAGAACAACAGTTGTATTTTGCG 57.328 32.000 19.45 0.00 44.59 4.85
3845 4507 3.291611 GCAAGGGACCTGGCAATG 58.708 61.111 12.86 0.00 42.37 2.82
3882 4551 3.683937 GGCCACATGCACCACCAC 61.684 66.667 0.00 0.00 43.89 4.16
3901 4570 4.070716 CAGATGCAACCTATCCTTCATCC 58.929 47.826 0.00 0.00 32.92 3.51
3912 4582 2.756760 CCAAGCATAACAGATGCAACCT 59.243 45.455 11.78 0.00 46.77 3.50
3929 4599 1.065418 AGGGTTTGATCCGCTACCAAG 60.065 52.381 0.00 0.00 32.20 3.61
3932 4602 1.540580 GCTAGGGTTTGATCCGCTACC 60.541 57.143 0.00 0.00 0.00 3.18
4021 4693 2.028112 GCACCCAATCATAGAGGCGATA 60.028 50.000 0.00 0.00 0.00 2.92
4075 4748 6.208007 CACATTACATCAGGCATATGACCAAT 59.792 38.462 4.47 0.00 30.46 3.16
4102 4775 8.515414 CGATCATCATATAGGAGTACTCAACAA 58.485 37.037 23.91 7.37 0.00 2.83
4147 4821 4.332543 TCAGCAAAACGCCATTGTAGATAG 59.667 41.667 0.00 0.00 44.04 2.08
4149 4823 3.081061 TCAGCAAAACGCCATTGTAGAT 58.919 40.909 0.00 0.00 44.04 1.98
4150 4824 2.483877 CTCAGCAAAACGCCATTGTAGA 59.516 45.455 0.00 0.00 44.04 2.59
4151 4825 2.226437 ACTCAGCAAAACGCCATTGTAG 59.774 45.455 0.00 0.00 44.04 2.74
4220 4894 2.369860 TGTGAGCTTGTTGATCTGGTCT 59.630 45.455 0.00 0.00 31.32 3.85
4235 4909 7.559590 AGACAGAACCATTTAATATGTGAGC 57.440 36.000 0.00 0.00 0.00 4.26
4243 4917 7.885399 AGCTGAGTTAAGACAGAACCATTTAAT 59.115 33.333 11.50 0.00 36.38 1.40
4251 4925 5.294552 ACAAACAGCTGAGTTAAGACAGAAC 59.705 40.000 23.35 0.00 36.38 3.01
4296 4975 4.837860 ACCAATCAAAACCTAATGCTGGAA 59.162 37.500 0.00 0.00 0.00 3.53
4333 5012 3.621268 GCAGTATTTAATCTGCGTCCACA 59.379 43.478 11.41 0.00 45.42 4.17
4342 5057 5.738909 ACAGTCAGCTGCAGTATTTAATCT 58.261 37.500 16.64 0.00 46.30 2.40
4345 5060 6.758416 CAGATACAGTCAGCTGCAGTATTTAA 59.242 38.462 16.64 0.00 46.30 1.52
4346 5061 6.276091 CAGATACAGTCAGCTGCAGTATTTA 58.724 40.000 16.64 0.00 46.30 1.40
4348 5063 4.442612 CCAGATACAGTCAGCTGCAGTATT 60.443 45.833 16.64 0.00 46.30 1.89
4349 5064 3.069300 CCAGATACAGTCAGCTGCAGTAT 59.931 47.826 16.64 18.83 46.30 2.12
4350 5065 2.428530 CCAGATACAGTCAGCTGCAGTA 59.571 50.000 16.64 11.76 46.30 2.74
4380 5110 7.421530 TCTTTAGAATCAGTTTTTCAGGTCG 57.578 36.000 0.00 0.00 0.00 4.79
4395 5125 6.372659 AGTGTGCAAACGATCATCTTTAGAAT 59.627 34.615 0.16 0.00 0.00 2.40
4396 5126 5.700832 AGTGTGCAAACGATCATCTTTAGAA 59.299 36.000 0.16 0.00 0.00 2.10
4455 5185 0.723981 GTTGCAGGAGCGCTAAAGAG 59.276 55.000 11.50 0.00 46.23 2.85
4457 5187 0.955428 TGGTTGCAGGAGCGCTAAAG 60.955 55.000 11.50 3.60 46.23 1.85
4459 5189 1.072332 TTGGTTGCAGGAGCGCTAA 59.928 52.632 11.50 0.00 46.23 3.09
4527 5265 7.290842 CGCTAACAGTTATATATGCAACTTGG 58.709 38.462 0.00 0.00 32.72 3.61
4531 5269 6.223138 TGCGCTAACAGTTATATATGCAAC 57.777 37.500 9.73 0.00 0.00 4.17
4639 5384 5.952387 TGGGGAAATAATCGGAGATGAATT 58.048 37.500 0.00 0.00 45.12 2.17
4640 5385 5.582950 TGGGGAAATAATCGGAGATGAAT 57.417 39.130 0.00 0.00 45.12 2.57
4647 5392 4.340950 GCAAATCTTGGGGAAATAATCGGA 59.659 41.667 0.00 0.00 0.00 4.55
4653 5398 3.699038 CGGAAGCAAATCTTGGGGAAATA 59.301 43.478 0.00 0.00 34.56 1.40
4682 5427 4.487714 TTTGCACCCTAGATTTCTCGAT 57.512 40.909 0.00 0.00 0.00 3.59
4693 5438 0.972883 GTTGGCCAATTTGCACCCTA 59.027 50.000 23.66 0.00 0.00 3.53
4694 5439 0.763986 AGTTGGCCAATTTGCACCCT 60.764 50.000 23.66 8.39 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.