Multiple sequence alignment - TraesCS5B01G214200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G214200 chr5B 100.000 3387 0 0 1 3387 387093317 387096703 0.000000e+00 6255.0
1 TraesCS5B01G214200 chr5B 80.562 427 36 22 512 911 386843285 386843691 5.530000e-73 285.0
2 TraesCS5B01G214200 chr5B 82.759 232 26 7 23 252 386842656 386842875 9.590000e-46 195.0
3 TraesCS5B01G214200 chr5D 89.839 1555 101 22 500 2021 331319802 331321332 0.000000e+00 1943.0
4 TraesCS5B01G214200 chr5D 87.169 491 34 8 1 471 331262713 331263194 6.440000e-147 531.0
5 TraesCS5B01G214200 chr5D 87.983 233 25 2 2180 2412 331321591 331321820 4.310000e-69 272.0
6 TraesCS5B01G214200 chr5D 83.117 231 29 4 23 252 331260867 331261088 5.730000e-48 202.0
7 TraesCS5B01G214200 chr5D 89.032 155 11 2 512 666 331261195 331261343 1.600000e-43 187.0
8 TraesCS5B01G214200 chr5D 88.571 140 16 0 2540 2679 76219904 76220043 1.620000e-38 171.0
9 TraesCS5B01G214200 chr5D 88.235 51 2 3 1 51 440170273 440170319 1.310000e-04 58.4
10 TraesCS5B01G214200 chr5A 93.029 832 41 6 872 1696 431914858 431915679 0.000000e+00 1199.0
11 TraesCS5B01G214200 chr5A 87.711 415 36 8 7 410 431907134 431907544 1.420000e-128 470.0
12 TraesCS5B01G214200 chr5A 90.030 331 20 6 1693 2021 431915731 431916050 1.880000e-112 416.0
13 TraesCS5B01G214200 chr5A 84.275 407 36 13 512 911 431896171 431896556 4.130000e-99 372.0
14 TraesCS5B01G214200 chr5A 89.637 193 18 1 2183 2375 431916321 431916511 9.390000e-61 244.0
15 TraesCS5B01G214200 chr5A 85.652 230 24 3 21 250 431895838 431896058 2.030000e-57 233.0
16 TraesCS5B01G214200 chr5A 87.356 174 14 5 713 879 431907571 431907743 3.450000e-45 193.0
17 TraesCS5B01G214200 chr5A 84.043 94 14 1 283 375 431895751 431895844 4.650000e-14 89.8
18 TraesCS5B01G214200 chr5A 100.000 29 0 0 346 374 7714108 7714080 2.000000e-03 54.7
19 TraesCS5B01G214200 chrUn 89.661 619 57 7 2776 3387 78924498 78925116 0.000000e+00 782.0
20 TraesCS5B01G214200 chrUn 94.574 129 6 1 2552 2679 88207848 88207976 7.410000e-47 198.0
21 TraesCS5B01G214200 chrUn 89.510 143 14 1 2537 2679 35318279 35318138 2.690000e-41 180.0
22 TraesCS5B01G214200 chr2D 88.245 587 62 7 2808 3387 636191664 636192250 0.000000e+00 695.0
23 TraesCS5B01G214200 chr2D 95.000 80 4 0 2680 2759 479952604 479952683 3.550000e-25 126.0
24 TraesCS5B01G214200 chr7D 85.366 205 23 5 49 253 13688437 13688634 4.430000e-49 206.0
25 TraesCS5B01G214200 chr7D 89.076 119 12 1 135 253 13692329 13692446 2.720000e-31 147.0
26 TraesCS5B01G214200 chr7D 86.992 123 14 2 131 253 13691056 13691176 1.640000e-28 137.0
27 TraesCS5B01G214200 chr7D 87.395 119 14 1 135 253 13689787 13689904 5.900000e-28 135.0
28 TraesCS5B01G214200 chr7D 95.062 81 4 0 2680 2760 218418310 218418390 9.860000e-26 128.0
29 TraesCS5B01G214200 chr6D 91.549 142 12 0 2542 2683 323285671 323285530 2.670000e-46 196.0
30 TraesCS5B01G214200 chr6D 81.657 169 27 4 47 213 2855965 2855799 1.640000e-28 137.0
31 TraesCS5B01G214200 chr6D 85.149 101 14 1 282 381 1935902 1935802 5.980000e-18 102.0
32 TraesCS5B01G214200 chr2B 91.429 140 10 2 2542 2680 167474897 167475035 1.240000e-44 191.0
33 TraesCS5B01G214200 chr2B 87.234 94 9 3 283 374 777125153 777125245 1.660000e-18 104.0
34 TraesCS5B01G214200 chr2B 92.537 67 4 1 2776 2842 298290465 298290530 1.000000e-15 95.3
35 TraesCS5B01G214200 chr7B 91.367 139 10 2 2545 2682 744645832 744645695 4.460000e-44 189.0
36 TraesCS5B01G214200 chr7B 85.556 180 22 4 2535 2712 679795286 679795463 5.770000e-43 185.0
37 TraesCS5B01G214200 chr7B 90.551 127 12 0 2553 2679 336723517 336723391 5.810000e-38 169.0
38 TraesCS5B01G214200 chr7B 87.500 104 10 2 2659 2759 405051424 405051321 2.140000e-22 117.0
39 TraesCS5B01G214200 chr7B 94.000 50 3 0 2776 2825 100020559 100020608 3.620000e-10 76.8
40 TraesCS5B01G214200 chr4A 91.367 139 10 2 2553 2691 589667168 589667304 4.460000e-44 189.0
41 TraesCS5B01G214200 chr3B 90.210 143 14 0 2537 2679 823500066 823500208 1.600000e-43 187.0
42 TraesCS5B01G214200 chr3B 92.188 128 10 0 2552 2679 823560852 823560725 7.470000e-42 182.0
43 TraesCS5B01G214200 chr3B 84.444 90 11 3 286 373 820287216 820287304 6.020000e-13 86.1
44 TraesCS5B01G214200 chr1B 91.304 138 10 2 2543 2679 623397426 623397562 1.600000e-43 187.0
45 TraesCS5B01G214200 chr1B 80.676 207 38 2 47 251 670391781 670391987 3.500000e-35 159.0
46 TraesCS5B01G214200 chr1B 83.429 175 24 3 79 251 642667954 642668125 1.260000e-34 158.0
47 TraesCS5B01G214200 chr6B 90.141 142 13 1 2540 2680 160917233 160917374 2.080000e-42 183.0
48 TraesCS5B01G214200 chr6B 92.727 55 3 1 2776 2829 505885677 505885731 1.010000e-10 78.7
49 TraesCS5B01G214200 chr4B 83.590 195 30 2 53 246 522676235 522676042 7.470000e-42 182.0
50 TraesCS5B01G214200 chr4B 87.333 150 15 4 2534 2682 660689352 660689498 5.810000e-38 169.0
51 TraesCS5B01G214200 chr6A 88.732 142 14 2 2541 2680 116945533 116945392 4.490000e-39 172.0
52 TraesCS5B01G214200 chr6A 91.765 85 7 0 2680 2764 496842258 496842342 5.940000e-23 119.0
53 TraesCS5B01G214200 chr6A 87.755 49 3 2 3 51 90028925 90028880 2.000000e-03 54.7
54 TraesCS5B01G214200 chr3D 80.392 204 37 2 50 251 500654080 500653878 5.850000e-33 152.0
55 TraesCS5B01G214200 chr3D 85.859 99 12 2 140 238 608404764 608404668 1.660000e-18 104.0
56 TraesCS5B01G214200 chr7A 83.432 169 16 8 76 240 689839112 689839272 2.720000e-31 147.0
57 TraesCS5B01G214200 chr4D 85.915 142 12 3 2776 2909 35741051 35741192 9.800000e-31 145.0
58 TraesCS5B01G214200 chr4D 79.874 159 29 3 55 212 71446497 71446341 2.760000e-21 113.0
59 TraesCS5B01G214200 chr3A 93.976 83 5 0 2680 2762 99426264 99426182 3.550000e-25 126.0
60 TraesCS5B01G214200 chr3A 83.168 101 16 1 282 381 126294216 126294116 1.290000e-14 91.6
61 TraesCS5B01G214200 chr3A 82.979 94 11 3 286 374 687063133 687063226 2.800000e-11 80.5
62 TraesCS5B01G214200 chr3A 83.333 84 13 1 290 372 12159908 12159825 3.620000e-10 76.8
63 TraesCS5B01G214200 chr2A 95.000 80 4 0 2680 2759 19379126 19379047 3.550000e-25 126.0
64 TraesCS5B01G214200 chr2A 92.857 84 5 1 2680 2763 572054294 572054212 1.650000e-23 121.0
65 TraesCS5B01G214200 chr1A 95.000 80 4 0 2680 2759 67222681 67222602 3.550000e-25 126.0
66 TraesCS5B01G214200 chr1A 91.667 60 3 2 2784 2841 496168206 496168147 7.790000e-12 82.4
67 TraesCS5B01G214200 chr1D 90.110 91 9 0 2680 2770 64325923 64326013 5.940000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G214200 chr5B 387093317 387096703 3386 False 6255.000000 6255 100.000000 1 3387 1 chr5B.!!$F1 3386
1 TraesCS5B01G214200 chr5B 386842656 386843691 1035 False 240.000000 285 81.660500 23 911 2 chr5B.!!$F2 888
2 TraesCS5B01G214200 chr5D 331319802 331321820 2018 False 1107.500000 1943 88.911000 500 2412 2 chr5D.!!$F4 1912
3 TraesCS5B01G214200 chr5D 331260867 331263194 2327 False 306.666667 531 86.439333 1 666 3 chr5D.!!$F3 665
4 TraesCS5B01G214200 chr5A 431914858 431916511 1653 False 619.666667 1199 90.898667 872 2375 3 chr5A.!!$F3 1503
5 TraesCS5B01G214200 chr5A 431907134 431907743 609 False 331.500000 470 87.533500 7 879 2 chr5A.!!$F2 872
6 TraesCS5B01G214200 chr5A 431895751 431896556 805 False 231.600000 372 84.656667 21 911 3 chr5A.!!$F1 890
7 TraesCS5B01G214200 chrUn 78924498 78925116 618 False 782.000000 782 89.661000 2776 3387 1 chrUn.!!$F1 611
8 TraesCS5B01G214200 chr2D 636191664 636192250 586 False 695.000000 695 88.245000 2808 3387 1 chr2D.!!$F2 579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
985 1298 0.106918 ACTTCCTTTCACCCACGCAA 60.107 50.0 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2418 3277 0.030101 CGTCAGCCCGCAAAAGAAAA 59.97 50.0 0.0 0.0 0.0 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
258 345 9.482627 CTATATATCTGGTCCAACTTTTGACTC 57.517 37.037 0.00 0.00 0.00 3.36
265 352 5.355910 TGGTCCAACTTTTGACTCAACTTAC 59.644 40.000 0.00 0.00 0.00 2.34
295 393 7.438564 GGACAGAGGGAATAGATAGTTTTCTC 58.561 42.308 0.00 0.00 0.00 2.87
312 410 8.073467 AGTTTTCTCCATAAACTTGGTCAAAA 57.927 30.769 0.00 0.00 41.69 2.44
316 414 8.885494 TTCTCCATAAACTTGGTCAAAATTTG 57.115 30.769 0.00 0.00 38.01 2.32
321 437 7.331687 CCATAAACTTGGTCAAAATTTGCTAGG 59.668 37.037 0.00 0.00 31.74 3.02
322 438 4.257267 ACTTGGTCAAAATTTGCTAGGC 57.743 40.909 0.00 0.00 0.00 3.93
325 441 4.255833 TGGTCAAAATTTGCTAGGCTTG 57.744 40.909 0.00 0.00 0.00 4.01
326 442 3.894427 TGGTCAAAATTTGCTAGGCTTGA 59.106 39.130 0.00 0.00 0.00 3.02
327 443 4.237724 GGTCAAAATTTGCTAGGCTTGAC 58.762 43.478 0.00 10.83 37.72 3.18
331 447 7.145323 GTCAAAATTTGCTAGGCTTGACTTTA 58.855 34.615 0.00 0.00 36.49 1.85
365 482 9.719355 TTATATGCACTACATTATGAAACGGAT 57.281 29.630 0.00 0.00 40.38 4.18
380 498 4.431416 AACGGATGGAGTATTGCCATTA 57.569 40.909 0.00 0.00 45.81 1.90
381 499 3.740115 ACGGATGGAGTATTGCCATTAC 58.260 45.455 0.00 0.00 45.81 1.89
412 530 3.054287 TGGTGAGTTTGTAACAGGTCCAA 60.054 43.478 0.00 0.00 0.00 3.53
418 536 3.655615 TTGTAACAGGTCCAAACTGGT 57.344 42.857 0.00 0.00 40.23 4.00
420 538 2.158726 TGTAACAGGTCCAAACTGGTCC 60.159 50.000 1.15 1.15 44.59 4.46
423 541 4.821935 GGTCCAAACTGGTCCTGG 57.178 61.111 0.33 0.00 41.62 4.45
424 542 1.844130 GGTCCAAACTGGTCCTGGT 59.156 57.895 0.33 0.00 41.62 4.00
426 544 0.602905 GTCCAAACTGGTCCTGGTCG 60.603 60.000 0.33 0.00 39.03 4.79
428 546 1.752198 CAAACTGGTCCTGGTCGGA 59.248 57.895 0.33 0.00 40.30 4.55
429 547 0.324943 CAAACTGGTCCTGGTCGGAT 59.675 55.000 0.33 0.00 45.44 4.18
430 548 0.324943 AAACTGGTCCTGGTCGGATG 59.675 55.000 0.33 0.00 45.44 3.51
431 549 2.185310 AACTGGTCCTGGTCGGATGC 62.185 60.000 0.33 0.00 45.44 3.91
432 550 2.606213 TGGTCCTGGTCGGATGCA 60.606 61.111 0.00 0.00 45.44 3.96
433 551 1.976132 CTGGTCCTGGTCGGATGCAT 61.976 60.000 0.00 0.00 45.44 3.96
434 552 1.524621 GGTCCTGGTCGGATGCATG 60.525 63.158 2.46 0.00 45.44 4.06
435 553 1.221840 GTCCTGGTCGGATGCATGT 59.778 57.895 2.46 0.00 45.44 3.21
436 554 1.091771 GTCCTGGTCGGATGCATGTG 61.092 60.000 2.46 0.00 45.44 3.21
447 565 3.367190 CGGATGCATGTGTTTGGATGAAA 60.367 43.478 2.46 0.00 0.00 2.69
466 584 7.013655 GGATGAAATTCAGCACATACCACTAAT 59.986 37.037 13.45 0.00 33.81 1.73
488 606 1.176527 TTTGCTCATAGGCTTGGTGC 58.823 50.000 0.00 0.00 41.94 5.01
489 607 1.026182 TTGCTCATAGGCTTGGTGCG 61.026 55.000 0.00 0.00 44.05 5.34
492 610 0.531532 CTCATAGGCTTGGTGCGGAG 60.532 60.000 0.00 0.00 44.05 4.63
494 612 1.995626 ATAGGCTTGGTGCGGAGGT 60.996 57.895 0.00 0.00 44.05 3.85
498 616 1.285950 GCTTGGTGCGGAGGTTTTC 59.714 57.895 0.00 0.00 0.00 2.29
530 777 7.491372 TCTTAGGTACAAATTCTGCGAAGTATG 59.509 37.037 0.00 0.00 0.00 2.39
553 800 2.858622 CCGTGCAGGTCAACATCAT 58.141 52.632 5.57 0.00 34.51 2.45
554 801 2.022764 CCGTGCAGGTCAACATCATA 57.977 50.000 5.57 0.00 34.51 2.15
555 802 2.564771 CCGTGCAGGTCAACATCATAT 58.435 47.619 5.57 0.00 34.51 1.78
556 803 2.288729 CCGTGCAGGTCAACATCATATG 59.711 50.000 5.57 0.00 34.51 1.78
590 845 1.000607 TCGAGAGAAGAACACAACCGG 60.001 52.381 0.00 0.00 37.03 5.28
609 864 1.270147 GGGACAAGATATTCCGGACCG 60.270 57.143 1.83 6.99 32.00 4.79
610 865 1.411612 GGACAAGATATTCCGGACCGT 59.588 52.381 13.94 0.00 0.00 4.83
611 866 2.545322 GGACAAGATATTCCGGACCGTC 60.545 54.545 13.94 1.82 0.00 4.79
756 1045 7.996644 ACCTTGAAGTTTATGTTTTCTGTCCTA 59.003 33.333 0.00 0.00 0.00 2.94
766 1055 7.823745 ATGTTTTCTGTCCTAGTTGTGATTT 57.176 32.000 0.00 0.00 0.00 2.17
825 1122 1.272092 TGACTCATCCTTGGCCCTTTG 60.272 52.381 0.00 0.00 0.00 2.77
826 1123 0.779997 ACTCATCCTTGGCCCTTTGT 59.220 50.000 0.00 0.00 0.00 2.83
827 1124 1.180029 CTCATCCTTGGCCCTTTGTG 58.820 55.000 0.00 0.00 0.00 3.33
902 1206 0.810031 CTTACTCGCCAATCCACCGG 60.810 60.000 0.00 0.00 0.00 5.28
942 1247 0.734942 AAATTGCGACCGACGACGAT 60.735 50.000 9.28 0.00 45.77 3.73
965 1278 2.306384 CCCACCTCCCCACTAACCC 61.306 68.421 0.00 0.00 0.00 4.11
968 1281 0.840722 CACCTCCCCACTAACCCACT 60.841 60.000 0.00 0.00 0.00 4.00
985 1298 0.106918 ACTTCCTTTCACCCACGCAA 60.107 50.000 0.00 0.00 0.00 4.85
988 1301 0.608035 TCCTTTCACCCACGCAATCC 60.608 55.000 0.00 0.00 0.00 3.01
991 1304 1.511318 TTTCACCCACGCAATCCACG 61.511 55.000 0.00 0.00 0.00 4.94
994 1307 2.358125 CCCACGCAATCCACGACA 60.358 61.111 0.00 0.00 0.00 4.35
995 1308 2.677003 CCCACGCAATCCACGACAC 61.677 63.158 0.00 0.00 0.00 3.67
996 1309 1.958715 CCACGCAATCCACGACACA 60.959 57.895 0.00 0.00 0.00 3.72
997 1310 1.502990 CCACGCAATCCACGACACAA 61.503 55.000 0.00 0.00 0.00 3.33
1035 1348 1.388065 CGGAGCTCGACCTTCAGGAT 61.388 60.000 7.83 0.00 42.43 3.24
1138 1451 4.189188 ACGAGATCGGCCGGTTCG 62.189 66.667 30.80 30.80 44.95 3.95
1366 1730 4.228567 TGTTCGACGCCTGGTGCA 62.229 61.111 7.27 0.00 41.33 4.57
1446 1810 2.258591 GAGCTCGTGGTGCTCGAA 59.741 61.111 0.00 0.00 45.73 3.71
1545 1909 3.151022 GAGGAGCCCTGGGACGAG 61.151 72.222 19.27 0.00 31.76 4.18
1683 2052 1.270199 TGCAGGTAAAACTAACCGCGA 60.270 47.619 8.23 0.00 42.15 5.87
1770 2377 5.835113 TGCTTAAGATTATGAACCAAGGC 57.165 39.130 6.67 0.00 0.00 4.35
1784 2391 1.600413 CCAAGGCTTGTGCGACTTTTC 60.600 52.381 24.57 0.00 40.82 2.29
1788 2395 0.040067 GCTTGTGCGACTTTTCCTGG 60.040 55.000 0.00 0.00 0.00 4.45
1821 2428 6.012113 TCAAACAATGAAGGAGGATTGTCAT 58.988 36.000 0.00 0.00 41.00 3.06
1823 2430 7.337689 TCAAACAATGAAGGAGGATTGTCATAG 59.662 37.037 0.00 0.00 41.00 2.23
1850 2458 6.875926 GCTGTTGCTTAGAATTTGGTTATG 57.124 37.500 0.00 0.00 36.03 1.90
1861 2469 7.671495 AGAATTTGGTTATGCAATTTTGGAC 57.329 32.000 0.00 0.00 0.00 4.02
1902 2510 4.105697 AGTCCCTTTTCCTGTGAACCATTA 59.894 41.667 0.00 0.00 0.00 1.90
1913 2521 7.377398 TCCTGTGAACCATTAATTGTGAAATG 58.623 34.615 0.00 0.00 33.72 2.32
1915 2523 8.303156 CCTGTGAACCATTAATTGTGAAATGTA 58.697 33.333 0.00 0.00 32.34 2.29
1916 2524 9.345517 CTGTGAACCATTAATTGTGAAATGTAG 57.654 33.333 0.00 0.00 32.34 2.74
1917 2525 9.072375 TGTGAACCATTAATTGTGAAATGTAGA 57.928 29.630 0.00 0.00 32.34 2.59
1918 2526 9.341899 GTGAACCATTAATTGTGAAATGTAGAC 57.658 33.333 0.00 0.00 32.34 2.59
1920 2528 7.404671 ACCATTAATTGTGAAATGTAGACCC 57.595 36.000 0.00 0.00 32.34 4.46
1945 2553 2.871022 GTCTTCGTCGGAGCATCTAGTA 59.129 50.000 0.00 0.00 33.73 1.82
1954 2562 6.400091 CGTCGGAGCATCTAGTATAAATTTGC 60.400 42.308 0.00 0.00 33.73 3.68
1985 2594 6.826231 TGAGTTGACTAATGACTGAAAAACCA 59.174 34.615 0.00 0.00 0.00 3.67
1999 2608 4.142049 TGAAAAACCATGTTGACTTGACCC 60.142 41.667 0.00 0.00 0.00 4.46
2000 2609 1.604604 AACCATGTTGACTTGACCCG 58.395 50.000 0.00 0.00 0.00 5.28
2021 2630 1.003866 CGACGACGACAGCATATGAGA 60.004 52.381 6.97 0.00 42.66 3.27
2022 2631 2.538939 CGACGACGACAGCATATGAGAA 60.539 50.000 6.97 0.00 42.66 2.87
2023 2632 3.633235 GACGACGACAGCATATGAGAAT 58.367 45.455 6.97 0.00 0.00 2.40
2024 2633 3.375642 ACGACGACAGCATATGAGAATG 58.624 45.455 6.97 1.68 0.00 2.67
2025 2634 3.066760 ACGACGACAGCATATGAGAATGA 59.933 43.478 6.97 0.00 0.00 2.57
2026 2635 3.667726 CGACGACAGCATATGAGAATGAG 59.332 47.826 6.97 2.61 0.00 2.90
2027 2636 4.555511 CGACGACAGCATATGAGAATGAGA 60.556 45.833 6.97 0.00 0.00 3.27
2028 2637 4.869215 ACGACAGCATATGAGAATGAGAG 58.131 43.478 6.97 0.22 0.00 3.20
2029 2638 4.236147 CGACAGCATATGAGAATGAGAGG 58.764 47.826 6.97 0.00 0.00 3.69
2030 2639 4.261952 CGACAGCATATGAGAATGAGAGGT 60.262 45.833 6.97 0.00 0.00 3.85
2031 2640 5.609423 GACAGCATATGAGAATGAGAGGTT 58.391 41.667 6.97 0.00 0.00 3.50
2032 2641 5.609423 ACAGCATATGAGAATGAGAGGTTC 58.391 41.667 6.97 0.00 0.00 3.62
2033 2642 4.685165 CAGCATATGAGAATGAGAGGTTCG 59.315 45.833 6.97 0.00 0.00 3.95
2034 2643 4.586421 AGCATATGAGAATGAGAGGTTCGA 59.414 41.667 6.97 0.00 0.00 3.71
2035 2644 5.069648 AGCATATGAGAATGAGAGGTTCGAA 59.930 40.000 6.97 0.00 0.00 3.71
2036 2645 5.404968 GCATATGAGAATGAGAGGTTCGAAG 59.595 44.000 6.97 0.00 0.00 3.79
2037 2646 3.238108 TGAGAATGAGAGGTTCGAAGC 57.762 47.619 19.40 19.40 0.00 3.86
2038 2647 2.562738 TGAGAATGAGAGGTTCGAAGCA 59.437 45.455 27.46 8.77 0.00 3.91
2039 2648 3.186119 GAGAATGAGAGGTTCGAAGCAG 58.814 50.000 27.46 0.00 0.00 4.24
2040 2649 2.564947 AGAATGAGAGGTTCGAAGCAGT 59.435 45.455 27.46 14.84 0.00 4.40
2041 2650 3.007398 AGAATGAGAGGTTCGAAGCAGTT 59.993 43.478 27.46 13.16 0.00 3.16
2042 2651 2.910688 TGAGAGGTTCGAAGCAGTTT 57.089 45.000 27.46 8.31 0.00 2.66
2052 2661 5.518487 GGTTCGAAGCAGTTTCATTTTTCAA 59.482 36.000 21.83 0.00 35.43 2.69
2059 2668 6.050432 AGCAGTTTCATTTTTCAAATCAGCA 58.950 32.000 0.00 0.00 0.00 4.41
2064 2673 5.804944 TCATTTTTCAAATCAGCAGGGAA 57.195 34.783 0.00 0.00 0.00 3.97
2067 2676 2.559698 TTCAAATCAGCAGGGAACGA 57.440 45.000 0.00 0.00 0.00 3.85
2088 2697 3.290948 TTCCCCGGTTCCATTTCATAG 57.709 47.619 0.00 0.00 0.00 2.23
2091 2700 3.267291 TCCCCGGTTCCATTTCATAGAAA 59.733 43.478 0.00 0.00 0.00 2.52
2093 2702 4.142249 CCCCGGTTCCATTTCATAGAAAAC 60.142 45.833 0.00 0.00 0.00 2.43
2094 2703 4.705023 CCCGGTTCCATTTCATAGAAAACT 59.295 41.667 0.00 0.00 0.00 2.66
2095 2704 5.163652 CCCGGTTCCATTTCATAGAAAACTC 60.164 44.000 0.00 0.00 0.00 3.01
2096 2705 5.414454 CCGGTTCCATTTCATAGAAAACTCA 59.586 40.000 0.00 0.00 0.00 3.41
2124 2750 4.547671 TCAGAACCCCAACCAAAAACATA 58.452 39.130 0.00 0.00 0.00 2.29
2133 2759 5.008514 CCCAACCAAAAACATAAAGGCAAAG 59.991 40.000 0.00 0.00 0.00 2.77
2134 2760 5.505489 CCAACCAAAAACATAAAGGCAAAGC 60.505 40.000 0.00 0.00 0.00 3.51
2136 2762 4.815846 ACCAAAAACATAAAGGCAAAGCTG 59.184 37.500 0.00 0.00 0.00 4.24
2138 2764 5.296531 CCAAAAACATAAAGGCAAAGCTGTT 59.703 36.000 0.00 0.00 0.00 3.16
2139 2765 5.989551 AAAACATAAAGGCAAAGCTGTTG 57.010 34.783 0.00 0.00 0.00 3.33
2140 2766 4.670896 AACATAAAGGCAAAGCTGTTGT 57.329 36.364 9.40 0.00 0.00 3.32
2141 2767 4.670896 ACATAAAGGCAAAGCTGTTGTT 57.329 36.364 9.40 1.59 0.00 2.83
2142 2768 5.022282 ACATAAAGGCAAAGCTGTTGTTT 57.978 34.783 9.40 6.52 0.00 2.83
2143 2769 6.155475 ACATAAAGGCAAAGCTGTTGTTTA 57.845 33.333 9.40 7.93 0.00 2.01
2146 2772 5.845391 AAAGGCAAAGCTGTTGTTTACTA 57.155 34.783 9.40 0.00 0.00 1.82
2149 2775 5.316987 AGGCAAAGCTGTTGTTTACTATCT 58.683 37.500 9.40 0.00 0.00 1.98
2150 2776 5.182001 AGGCAAAGCTGTTGTTTACTATCTG 59.818 40.000 9.40 0.00 0.00 2.90
2151 2777 4.853743 GCAAAGCTGTTGTTTACTATCTGC 59.146 41.667 9.40 0.00 0.00 4.26
2152 2778 5.393962 CAAAGCTGTTGTTTACTATCTGCC 58.606 41.667 0.00 0.00 0.00 4.85
2153 2779 4.286297 AGCTGTTGTTTACTATCTGCCA 57.714 40.909 0.00 0.00 0.00 4.92
2159 2785 7.042658 GCTGTTGTTTACTATCTGCCATACTAC 60.043 40.741 0.00 0.00 0.00 2.73
2171 2797 6.711277 TCTGCCATACTACTGACAATTTCTT 58.289 36.000 0.00 0.00 0.00 2.52
2172 2798 6.818644 TCTGCCATACTACTGACAATTTCTTC 59.181 38.462 0.00 0.00 0.00 2.87
2174 2800 5.006746 GCCATACTACTGACAATTTCTTCGG 59.993 44.000 0.00 0.00 0.00 4.30
2177 2803 4.566987 ACTACTGACAATTTCTTCGGGTC 58.433 43.478 0.00 0.00 0.00 4.46
2181 3040 3.138304 TGACAATTTCTTCGGGTCTGTG 58.862 45.455 0.00 0.00 0.00 3.66
2190 3049 0.532573 TCGGGTCTGTGCTGAATCTC 59.467 55.000 0.00 0.00 0.00 2.75
2191 3050 0.460987 CGGGTCTGTGCTGAATCTCC 60.461 60.000 0.00 0.00 0.00 3.71
2195 3054 1.203523 GTCTGTGCTGAATCTCCGTCT 59.796 52.381 0.00 0.00 0.00 4.18
2207 3066 1.203287 TCTCCGTCTGCTCTTGTGATG 59.797 52.381 0.00 0.00 0.00 3.07
2208 3067 1.203287 CTCCGTCTGCTCTTGTGATGA 59.797 52.381 0.00 0.00 0.00 2.92
2209 3068 1.827344 TCCGTCTGCTCTTGTGATGAT 59.173 47.619 0.00 0.00 0.00 2.45
2210 3069 2.159184 TCCGTCTGCTCTTGTGATGATC 60.159 50.000 0.00 0.00 0.00 2.92
2211 3070 2.200067 CGTCTGCTCTTGTGATGATCC 58.800 52.381 0.00 0.00 0.00 3.36
2297 3156 2.026301 CTTCGCGACGGGAGGATC 59.974 66.667 17.52 0.00 0.00 3.36
2311 3170 2.817258 GGAGGATCTCATACCACTCGAG 59.183 54.545 11.84 11.84 33.73 4.04
2323 3182 2.047274 CTCGAGGCCGGCTTTGAA 60.047 61.111 26.87 12.64 36.24 2.69
2364 3223 1.355066 GCTTGCCTTTCCTCGACTCG 61.355 60.000 0.00 0.00 0.00 4.18
2365 3224 0.038159 CTTGCCTTTCCTCGACTCGT 60.038 55.000 0.00 0.00 0.00 4.18
2389 3248 4.713824 CAAGGATGCAGTCATGTGAATT 57.286 40.909 0.00 0.00 31.96 2.17
2394 3253 5.479375 AGGATGCAGTCATGTGAATTCTTTT 59.521 36.000 7.05 0.00 31.96 2.27
2395 3254 5.803967 GGATGCAGTCATGTGAATTCTTTTC 59.196 40.000 7.05 0.00 31.96 2.29
2396 3255 5.771153 TGCAGTCATGTGAATTCTTTTCA 57.229 34.783 7.05 1.85 0.00 2.69
2397 3256 5.765176 TGCAGTCATGTGAATTCTTTTCAG 58.235 37.500 7.05 0.00 0.00 3.02
2398 3257 5.300034 TGCAGTCATGTGAATTCTTTTCAGT 59.700 36.000 7.05 0.00 0.00 3.41
2399 3258 5.855395 GCAGTCATGTGAATTCTTTTCAGTC 59.145 40.000 7.05 0.00 0.00 3.51
2400 3259 6.075918 CAGTCATGTGAATTCTTTTCAGTCG 58.924 40.000 7.05 0.00 0.00 4.18
2401 3260 5.180117 AGTCATGTGAATTCTTTTCAGTCGG 59.820 40.000 7.05 0.00 0.00 4.79
2402 3261 5.049405 GTCATGTGAATTCTTTTCAGTCGGT 60.049 40.000 7.05 0.00 0.00 4.69
2403 3262 4.811555 TGTGAATTCTTTTCAGTCGGTG 57.188 40.909 7.05 0.00 0.00 4.94
2404 3263 3.003275 TGTGAATTCTTTTCAGTCGGTGC 59.997 43.478 7.05 0.00 0.00 5.01
2405 3264 3.251004 GTGAATTCTTTTCAGTCGGTGCT 59.749 43.478 7.05 0.00 0.00 4.40
2406 3265 3.882888 TGAATTCTTTTCAGTCGGTGCTT 59.117 39.130 7.05 0.00 0.00 3.91
2407 3266 3.904136 ATTCTTTTCAGTCGGTGCTTG 57.096 42.857 0.00 0.00 0.00 4.01
2408 3267 2.325583 TCTTTTCAGTCGGTGCTTGT 57.674 45.000 0.00 0.00 0.00 3.16
2409 3268 2.639065 TCTTTTCAGTCGGTGCTTGTT 58.361 42.857 0.00 0.00 0.00 2.83
2410 3269 2.354510 TCTTTTCAGTCGGTGCTTGTTG 59.645 45.455 0.00 0.00 0.00 3.33
2411 3270 2.031258 TTTCAGTCGGTGCTTGTTGA 57.969 45.000 0.00 0.00 0.00 3.18
2412 3271 2.254546 TTCAGTCGGTGCTTGTTGAT 57.745 45.000 0.00 0.00 0.00 2.57
2413 3272 2.254546 TCAGTCGGTGCTTGTTGATT 57.745 45.000 0.00 0.00 0.00 2.57
2414 3273 2.571212 TCAGTCGGTGCTTGTTGATTT 58.429 42.857 0.00 0.00 0.00 2.17
2415 3274 2.948979 TCAGTCGGTGCTTGTTGATTTT 59.051 40.909 0.00 0.00 0.00 1.82
2416 3275 3.003275 TCAGTCGGTGCTTGTTGATTTTC 59.997 43.478 0.00 0.00 0.00 2.29
2417 3276 3.003689 CAGTCGGTGCTTGTTGATTTTCT 59.996 43.478 0.00 0.00 0.00 2.52
2418 3277 3.632145 AGTCGGTGCTTGTTGATTTTCTT 59.368 39.130 0.00 0.00 0.00 2.52
2419 3278 4.097892 AGTCGGTGCTTGTTGATTTTCTTT 59.902 37.500 0.00 0.00 0.00 2.52
2420 3279 4.803613 GTCGGTGCTTGTTGATTTTCTTTT 59.196 37.500 0.00 0.00 0.00 2.27
2421 3280 5.290885 GTCGGTGCTTGTTGATTTTCTTTTT 59.709 36.000 0.00 0.00 0.00 1.94
2422 3281 5.518487 TCGGTGCTTGTTGATTTTCTTTTTC 59.482 36.000 0.00 0.00 0.00 2.29
2423 3282 5.519927 CGGTGCTTGTTGATTTTCTTTTTCT 59.480 36.000 0.00 0.00 0.00 2.52
2424 3283 6.035975 CGGTGCTTGTTGATTTTCTTTTTCTT 59.964 34.615 0.00 0.00 0.00 2.52
2425 3284 7.412891 CGGTGCTTGTTGATTTTCTTTTTCTTT 60.413 33.333 0.00 0.00 0.00 2.52
2426 3285 8.236586 GGTGCTTGTTGATTTTCTTTTTCTTTT 58.763 29.630 0.00 0.00 0.00 2.27
2427 3286 9.054191 GTGCTTGTTGATTTTCTTTTTCTTTTG 57.946 29.630 0.00 0.00 0.00 2.44
2428 3287 7.750014 TGCTTGTTGATTTTCTTTTTCTTTTGC 59.250 29.630 0.00 0.00 0.00 3.68
2429 3288 7.045419 GCTTGTTGATTTTCTTTTTCTTTTGCG 60.045 33.333 0.00 0.00 0.00 4.85
2430 3289 6.770076 TGTTGATTTTCTTTTTCTTTTGCGG 58.230 32.000 0.00 0.00 0.00 5.69
2431 3290 5.982465 TGATTTTCTTTTTCTTTTGCGGG 57.018 34.783 0.00 0.00 0.00 6.13
2432 3291 4.272261 TGATTTTCTTTTTCTTTTGCGGGC 59.728 37.500 0.00 0.00 0.00 6.13
2433 3292 3.535280 TTTCTTTTTCTTTTGCGGGCT 57.465 38.095 0.00 0.00 0.00 5.19
2438 3297 0.816018 TTTCTTTTGCGGGCTGACGA 60.816 50.000 0.00 0.00 35.47 4.20
2446 3305 1.573829 GCGGGCTGACGATTGTTGAA 61.574 55.000 0.00 0.00 35.47 2.69
2447 3306 1.086696 CGGGCTGACGATTGTTGAAT 58.913 50.000 0.00 0.00 35.47 2.57
2448 3307 1.062587 CGGGCTGACGATTGTTGAATC 59.937 52.381 0.00 0.00 35.51 2.52
2463 3322 9.784824 GATTGTTGAATCGATCGAGTTAATTAG 57.215 33.333 22.61 0.00 0.00 1.73
2464 3323 7.161829 TGTTGAATCGATCGAGTTAATTAGC 57.838 36.000 22.61 12.19 0.00 3.09
2465 3324 6.978659 TGTTGAATCGATCGAGTTAATTAGCT 59.021 34.615 22.61 0.90 0.00 3.32
2466 3325 8.132995 TGTTGAATCGATCGAGTTAATTAGCTA 58.867 33.333 22.61 2.70 0.00 3.32
2467 3326 8.418681 GTTGAATCGATCGAGTTAATTAGCTAC 58.581 37.037 22.61 10.47 0.00 3.58
2468 3327 7.082602 TGAATCGATCGAGTTAATTAGCTACC 58.917 38.462 23.84 4.86 0.00 3.18
2469 3328 6.821031 ATCGATCGAGTTAATTAGCTACCT 57.179 37.500 23.84 0.00 0.00 3.08
2470 3329 6.630444 TCGATCGAGTTAATTAGCTACCTT 57.370 37.500 15.15 0.00 0.00 3.50
2471 3330 7.734924 TCGATCGAGTTAATTAGCTACCTTA 57.265 36.000 15.15 0.00 0.00 2.69
2472 3331 8.158169 TCGATCGAGTTAATTAGCTACCTTAA 57.842 34.615 15.15 0.00 0.00 1.85
2473 3332 8.072567 TCGATCGAGTTAATTAGCTACCTTAAC 58.927 37.037 15.15 20.58 36.20 2.01
2474 3333 7.859377 CGATCGAGTTAATTAGCTACCTTAACA 59.141 37.037 25.50 14.39 37.66 2.41
2475 3334 9.182933 GATCGAGTTAATTAGCTACCTTAACAG 57.817 37.037 25.50 20.99 37.66 3.16
2476 3335 8.059798 TCGAGTTAATTAGCTACCTTAACAGT 57.940 34.615 25.50 14.66 37.66 3.55
2477 3336 7.972277 TCGAGTTAATTAGCTACCTTAACAGTG 59.028 37.037 25.50 18.65 37.66 3.66
2478 3337 7.972277 CGAGTTAATTAGCTACCTTAACAGTGA 59.028 37.037 25.50 0.00 37.66 3.41
2479 3338 8.999220 AGTTAATTAGCTACCTTAACAGTGAC 57.001 34.615 25.50 7.06 37.66 3.67
2480 3339 8.591072 AGTTAATTAGCTACCTTAACAGTGACA 58.409 33.333 25.50 0.00 37.66 3.58
2481 3340 9.211485 GTTAATTAGCTACCTTAACAGTGACAA 57.789 33.333 22.00 0.00 36.07 3.18
2482 3341 9.781633 TTAATTAGCTACCTTAACAGTGACAAA 57.218 29.630 0.00 0.00 0.00 2.83
2483 3342 8.685838 AATTAGCTACCTTAACAGTGACAAAA 57.314 30.769 0.00 0.00 0.00 2.44
2484 3343 8.685838 ATTAGCTACCTTAACAGTGACAAAAA 57.314 30.769 0.00 0.00 0.00 1.94
2537 3396 9.809096 ACATCATGTATTAAGTTACAGAGTGAG 57.191 33.333 0.00 0.00 35.65 3.51
2551 3410 9.913451 GTTACAGAGTGAGTATTTACTACTACG 57.087 37.037 0.00 0.00 40.88 3.51
2556 3483 9.528018 AGAGTGAGTATTTACTACTACGTACTC 57.472 37.037 0.00 0.00 40.88 2.59
2566 3493 1.153369 TACGTACTCCCTCCGTCCG 60.153 63.158 0.00 0.00 36.12 4.79
2567 3494 2.593468 TACGTACTCCCTCCGTCCGG 62.593 65.000 0.00 0.00 36.12 5.14
2570 3497 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
2573 3500 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2574 3501 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2577 3504 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2578 3505 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2579 3506 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2581 3508 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
2582 3509 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
2587 3514 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
2588 3515 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
2590 3517 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
2598 3525 8.869109 ACTTGTCATCAAAATGAATAAAAGGGA 58.131 29.630 0.00 0.00 43.42 4.20
2599 3526 9.709495 CTTGTCATCAAAATGAATAAAAGGGAA 57.291 29.630 0.00 0.00 43.42 3.97
2601 3528 7.812191 TGTCATCAAAATGAATAAAAGGGAACG 59.188 33.333 0.00 0.00 43.42 3.95
2602 3529 7.812669 GTCATCAAAATGAATAAAAGGGAACGT 59.187 33.333 0.00 0.00 43.42 3.99
2603 3530 9.015367 TCATCAAAATGAATAAAAGGGAACGTA 57.985 29.630 0.00 0.00 38.97 3.57
2604 3531 9.801873 CATCAAAATGAATAAAAGGGAACGTAT 57.198 29.630 0.00 0.00 34.61 3.06
2607 3534 9.289303 CAAAATGAATAAAAGGGAACGTATCTG 57.711 33.333 0.00 0.00 0.00 2.90
2654 3655 9.260002 ACATTACTTTTTGTCCATTTTGATGAC 57.740 29.630 0.00 0.00 0.00 3.06
2655 3656 9.258826 CATTACTTTTTGTCCATTTTGATGACA 57.741 29.630 0.00 0.00 0.00 3.58
2656 3657 8.870160 TTACTTTTTGTCCATTTTGATGACAG 57.130 30.769 0.00 0.00 0.00 3.51
2657 3658 6.282930 ACTTTTTGTCCATTTTGATGACAGG 58.717 36.000 0.00 0.00 0.00 4.00
2658 3659 5.867903 TTTTGTCCATTTTGATGACAGGT 57.132 34.783 0.00 0.00 0.00 4.00
2659 3660 6.968263 TTTTGTCCATTTTGATGACAGGTA 57.032 33.333 0.00 0.00 0.00 3.08
2660 3661 7.537596 TTTTGTCCATTTTGATGACAGGTAT 57.462 32.000 0.00 0.00 0.00 2.73
2661 3662 7.537596 TTTGTCCATTTTGATGACAGGTATT 57.462 32.000 0.00 0.00 0.00 1.89
2662 3663 7.537596 TTGTCCATTTTGATGACAGGTATTT 57.462 32.000 0.00 0.00 0.00 1.40
2663 3664 7.537596 TGTCCATTTTGATGACAGGTATTTT 57.462 32.000 0.00 0.00 0.00 1.82
2664 3665 7.601856 TGTCCATTTTGATGACAGGTATTTTC 58.398 34.615 0.00 0.00 0.00 2.29
2665 3666 6.747280 GTCCATTTTGATGACAGGTATTTTCG 59.253 38.462 0.00 0.00 0.00 3.46
2666 3667 6.035843 CCATTTTGATGACAGGTATTTTCGG 58.964 40.000 0.00 0.00 0.00 4.30
2667 3668 6.127758 CCATTTTGATGACAGGTATTTTCGGA 60.128 38.462 0.00 0.00 0.00 4.55
2668 3669 5.873179 TTTGATGACAGGTATTTTCGGAC 57.127 39.130 0.00 0.00 0.00 4.79
2669 3670 3.517602 TGATGACAGGTATTTTCGGACG 58.482 45.455 0.00 0.00 0.00 4.79
2670 3671 2.373540 TGACAGGTATTTTCGGACGG 57.626 50.000 0.00 0.00 0.00 4.79
2671 3672 1.894466 TGACAGGTATTTTCGGACGGA 59.106 47.619 0.00 0.00 0.00 4.69
2672 3673 2.094390 TGACAGGTATTTTCGGACGGAG 60.094 50.000 0.00 0.00 0.00 4.63
2673 3674 1.206371 ACAGGTATTTTCGGACGGAGG 59.794 52.381 0.00 0.00 0.00 4.30
2674 3675 0.828677 AGGTATTTTCGGACGGAGGG 59.171 55.000 0.00 0.00 0.00 4.30
2675 3676 0.826062 GGTATTTTCGGACGGAGGGA 59.174 55.000 0.00 0.00 0.00 4.20
2676 3677 1.202498 GGTATTTTCGGACGGAGGGAG 60.202 57.143 0.00 0.00 0.00 4.30
2677 3678 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
2678 3679 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
2679 3680 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
2680 3681 0.967380 TTTCGGACGGAGGGAGTACC 60.967 60.000 0.00 0.00 40.67 3.34
2698 3699 9.543783 GGGAGTACCTCTGTAAACAAATATAAG 57.456 37.037 0.00 0.00 35.85 1.73
2756 3757 9.886132 TGTTCTTATATTTCTTTACAGAGGGAC 57.114 33.333 0.00 0.00 0.00 4.46
2760 3761 9.699703 CTTATATTTCTTTACAGAGGGACTAGC 57.300 37.037 0.00 0.00 41.55 3.42
2761 3762 7.676683 ATATTTCTTTACAGAGGGACTAGCA 57.323 36.000 0.00 0.00 41.55 3.49
2762 3763 5.818678 TTTCTTTACAGAGGGACTAGCAA 57.181 39.130 0.00 0.00 41.55 3.91
2766 3767 5.186021 TCTTTACAGAGGGACTAGCAAGAAG 59.814 44.000 0.00 0.00 41.55 2.85
2767 3768 1.552792 ACAGAGGGACTAGCAAGAAGC 59.447 52.381 0.00 0.00 41.55 3.86
2768 3769 1.552337 CAGAGGGACTAGCAAGAAGCA 59.448 52.381 0.00 0.00 44.12 3.91
2769 3770 2.170187 CAGAGGGACTAGCAAGAAGCAT 59.830 50.000 0.00 0.00 44.12 3.79
2770 3771 2.170187 AGAGGGACTAGCAAGAAGCATG 59.830 50.000 0.00 0.00 44.12 4.06
2771 3772 2.093235 GAGGGACTAGCAAGAAGCATGT 60.093 50.000 0.00 0.00 44.12 3.21
2772 3773 4.234180 GAGGGACTAGCAAGAAGCATGTG 61.234 52.174 0.00 0.00 44.12 3.21
2792 3793 1.728502 GCGTTTTCTCGAGAGTACGCT 60.729 52.381 39.68 0.00 43.65 5.07
2797 3798 5.330295 GTTTTCTCGAGAGTACGCTAATGA 58.670 41.667 15.94 0.00 0.00 2.57
2846 3847 8.087982 AGAATATATGTACATGAAGTTTGGCG 57.912 34.615 18.81 0.00 0.00 5.69
2849 3850 8.896320 ATATATGTACATGAAGTTTGGCGTAA 57.104 30.769 18.81 0.00 0.00 3.18
2865 3866 1.795872 CGTAATGCGAACACAAGACCA 59.204 47.619 0.00 0.00 44.77 4.02
2870 3871 1.131504 TGCGAACACAAGACCAAACAC 59.868 47.619 0.00 0.00 0.00 3.32
2871 3872 1.131504 GCGAACACAAGACCAAACACA 59.868 47.619 0.00 0.00 0.00 3.72
2873 3874 3.827625 CGAACACAAGACCAAACACAAA 58.172 40.909 0.00 0.00 0.00 2.83
2874 3875 3.851403 CGAACACAAGACCAAACACAAAG 59.149 43.478 0.00 0.00 0.00 2.77
2882 3883 1.892474 ACCAAACACAAAGCACACACT 59.108 42.857 0.00 0.00 0.00 3.55
2885 3886 4.104776 CCAAACACAAAGCACACACTAAG 58.895 43.478 0.00 0.00 0.00 2.18
2886 3887 4.104776 CAAACACAAAGCACACACTAAGG 58.895 43.478 0.00 0.00 0.00 2.69
2887 3888 2.297701 ACACAAAGCACACACTAAGGG 58.702 47.619 0.00 0.00 0.00 3.95
2892 3900 1.358152 AGCACACACTAAGGGCCTAA 58.642 50.000 6.41 0.00 0.00 2.69
2910 3918 5.240844 GGCCTAAAGCTAACTTCTCACAAAA 59.759 40.000 0.00 0.00 43.05 2.44
2926 3934 1.264826 CAAAACGTTGTAACCCTCCCG 59.735 52.381 0.00 0.00 0.00 5.14
2931 3939 2.148052 TTGTAACCCTCCCGCACCA 61.148 57.895 0.00 0.00 0.00 4.17
2934 3942 3.242897 TAACCCTCCCGCACCAACG 62.243 63.158 0.00 0.00 0.00 4.10
2952 3960 1.372087 CGCCTGCAAGTCTCCATTCC 61.372 60.000 0.00 0.00 0.00 3.01
2961 3969 2.938838 AGTCTCCATTCCTCTACCTCG 58.061 52.381 0.00 0.00 0.00 4.63
2976 3984 3.573772 CTCGGCGAGCACCTTGTCA 62.574 63.158 25.31 0.00 0.00 3.58
2981 3989 2.031516 CGAGCACCTTGTCAGCCAG 61.032 63.158 0.00 0.00 0.00 4.85
2986 3994 1.228063 ACCTTGTCAGCCAGTGCAG 60.228 57.895 0.00 0.00 41.13 4.41
2991 3999 1.121407 TGTCAGCCAGTGCAGTAGGT 61.121 55.000 0.00 0.00 41.13 3.08
3039 4047 1.073923 ACCCGAGCATTCCTCTGTTTT 59.926 47.619 0.00 0.00 38.49 2.43
3051 4059 4.739793 TCCTCTGTTTTCAAATGGACCAT 58.260 39.130 0.00 0.00 0.00 3.55
3054 4062 5.221501 CCTCTGTTTTCAAATGGACCATGTT 60.222 40.000 8.02 2.04 0.00 2.71
3057 4065 6.322456 TCTGTTTTCAAATGGACCATGTTGTA 59.678 34.615 8.02 6.24 0.00 2.41
3102 4110 1.142870 CTTCTATCCCGCCCATGGAAA 59.857 52.381 15.22 0.00 35.03 3.13
3146 4154 5.221581 ACCAATCAGTTAAAGTGTCCGTAGT 60.222 40.000 0.00 0.00 0.00 2.73
3186 4194 5.296151 TGATTCTCAGGTGTTCCCATATC 57.704 43.478 0.00 0.00 34.66 1.63
3246 4254 2.388310 TGTGGTTCACGTTGTCTTCA 57.612 45.000 0.00 0.00 37.14 3.02
3250 4258 3.184581 GTGGTTCACGTTGTCTTCATCTC 59.815 47.826 0.00 0.00 0.00 2.75
3330 4338 4.115516 CTGACGTCCAGATTCTGTATTGG 58.884 47.826 14.12 0.00 45.78 3.16
3349 4357 3.300388 TGGACAGCCAACCACATAAAAA 58.700 40.909 0.00 0.00 42.49 1.94
3351 4359 4.021544 TGGACAGCCAACCACATAAAAATC 60.022 41.667 0.00 0.00 42.49 2.17
3362 4370 8.557864 CAACCACATAAAAATCTTGCATTTCAA 58.442 29.630 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
240 311 3.947834 AGTTGAGTCAAAAGTTGGACCAG 59.052 43.478 7.25 0.00 34.58 4.00
246 318 5.263185 CCGTGTAAGTTGAGTCAAAAGTTG 58.737 41.667 7.25 0.00 0.00 3.16
258 345 1.337823 CCTCTGTCCCCGTGTAAGTTG 60.338 57.143 0.00 0.00 0.00 3.16
265 352 0.753262 CTATTCCCTCTGTCCCCGTG 59.247 60.000 0.00 0.00 0.00 4.94
295 393 7.331687 CCTAGCAAATTTTGACCAAGTTTATGG 59.668 37.037 13.26 0.00 46.38 2.74
339 455 9.719355 ATCCGTTTCATAATGTAGTGCATATAA 57.281 29.630 0.00 0.00 36.67 0.98
365 482 3.741075 CGCTGAGTAATGGCAATACTCCA 60.741 47.826 30.19 20.37 45.60 3.86
381 499 2.146342 ACAAACTCACCATTCGCTGAG 58.854 47.619 0.00 0.00 39.95 3.35
420 538 1.135603 CAAACACATGCATCCGACCAG 60.136 52.381 0.00 0.00 0.00 4.00
421 539 0.880441 CAAACACATGCATCCGACCA 59.120 50.000 0.00 0.00 0.00 4.02
422 540 0.171007 CCAAACACATGCATCCGACC 59.829 55.000 0.00 0.00 0.00 4.79
423 541 1.164411 TCCAAACACATGCATCCGAC 58.836 50.000 0.00 0.00 0.00 4.79
424 542 1.744522 CATCCAAACACATGCATCCGA 59.255 47.619 0.00 0.00 0.00 4.55
426 544 3.872511 TTCATCCAAACACATGCATCC 57.127 42.857 0.00 0.00 0.00 3.51
428 546 5.795972 TGAATTTCATCCAAACACATGCAT 58.204 33.333 0.00 0.00 0.00 3.96
429 547 5.211174 TGAATTTCATCCAAACACATGCA 57.789 34.783 0.00 0.00 0.00 3.96
430 548 4.092383 GCTGAATTTCATCCAAACACATGC 59.908 41.667 0.00 0.00 0.00 4.06
431 549 5.119588 GTGCTGAATTTCATCCAAACACATG 59.880 40.000 0.00 0.00 0.00 3.21
432 550 5.221481 TGTGCTGAATTTCATCCAAACACAT 60.221 36.000 0.00 0.00 30.03 3.21
433 551 4.099113 TGTGCTGAATTTCATCCAAACACA 59.901 37.500 0.00 5.72 32.37 3.72
434 552 4.619973 TGTGCTGAATTTCATCCAAACAC 58.380 39.130 0.00 3.50 0.00 3.32
435 553 4.933505 TGTGCTGAATTTCATCCAAACA 57.066 36.364 0.00 0.00 0.00 2.83
436 554 5.807011 GGTATGTGCTGAATTTCATCCAAAC 59.193 40.000 0.00 1.47 0.00 2.93
447 565 8.137437 GCAAATTATTAGTGGTATGTGCTGAAT 58.863 33.333 0.00 0.00 0.00 2.57
466 584 3.381272 GCACCAAGCCTATGAGCAAATTA 59.619 43.478 0.00 0.00 37.23 1.40
479 597 2.142357 GAAAACCTCCGCACCAAGCC 62.142 60.000 0.00 0.00 41.38 4.35
488 606 4.694037 ACCTAAGAAATTCGAAAACCTCCG 59.306 41.667 0.00 0.00 0.00 4.63
489 607 6.652062 TGTACCTAAGAAATTCGAAAACCTCC 59.348 38.462 0.00 0.00 0.00 4.30
492 610 9.687210 AATTTGTACCTAAGAAATTCGAAAACC 57.313 29.630 0.00 0.00 0.00 3.27
498 616 6.682863 CGCAGAATTTGTACCTAAGAAATTCG 59.317 38.462 16.48 13.74 44.97 3.34
553 800 3.138468 TCTCGACTTCTCCCTCCATCATA 59.862 47.826 0.00 0.00 0.00 2.15
554 801 2.091610 TCTCGACTTCTCCCTCCATCAT 60.092 50.000 0.00 0.00 0.00 2.45
555 802 1.285078 TCTCGACTTCTCCCTCCATCA 59.715 52.381 0.00 0.00 0.00 3.07
556 803 1.953686 CTCTCGACTTCTCCCTCCATC 59.046 57.143 0.00 0.00 0.00 3.51
560 807 2.993937 TCTTCTCTCGACTTCTCCCTC 58.006 52.381 0.00 0.00 0.00 4.30
590 845 1.411612 ACGGTCCGGAATATCTTGTCC 59.588 52.381 17.28 0.00 0.00 4.02
609 864 3.819877 AACCCGACGGCACTTGGAC 62.820 63.158 8.86 0.00 0.00 4.02
610 865 3.524648 GAACCCGACGGCACTTGGA 62.525 63.158 8.86 0.00 0.00 3.53
611 866 3.047877 GAACCCGACGGCACTTGG 61.048 66.667 8.86 0.00 0.00 3.61
756 1045 5.772521 CCTCGGAAATTCAAAATCACAACT 58.227 37.500 0.00 0.00 0.00 3.16
766 1055 0.611200 TCCTCGCCTCGGAAATTCAA 59.389 50.000 0.00 0.00 0.00 2.69
794 1083 3.947868 AGGATGAGTCATGTTTCCACAG 58.052 45.455 11.20 0.00 35.94 3.66
825 1122 2.329379 GATCGTGACAGACCAGAACAC 58.671 52.381 0.00 0.00 0.00 3.32
826 1123 1.272490 GGATCGTGACAGACCAGAACA 59.728 52.381 0.00 0.00 0.00 3.18
827 1124 1.272490 TGGATCGTGACAGACCAGAAC 59.728 52.381 0.00 0.00 0.00 3.01
912 1216 0.036448 TCGCAATTTTGTACGGGGGA 59.964 50.000 0.00 0.00 0.00 4.81
942 1247 0.103823 TAGTGGGGAGGTGGGGAAAA 60.104 55.000 0.00 0.00 0.00 2.29
965 1278 0.817634 TGCGTGGGTGAAAGGAAGTG 60.818 55.000 0.00 0.00 0.00 3.16
968 1281 1.243902 GATTGCGTGGGTGAAAGGAA 58.756 50.000 0.00 0.00 0.00 3.36
985 1298 0.960364 GCCATGGTTGTGTCGTGGAT 60.960 55.000 14.67 0.00 42.36 3.41
988 1301 1.900585 CTCGCCATGGTTGTGTCGTG 61.901 60.000 14.67 4.30 0.00 4.35
991 1304 2.870372 GCTCGCCATGGTTGTGTC 59.130 61.111 14.67 0.00 0.00 3.67
1138 1451 3.857854 CATGCAGACCGCGCAGTC 61.858 66.667 16.02 16.02 46.97 3.51
1197 1510 4.415501 CAGAAGTCGTGCGCGCAC 62.416 66.667 45.38 45.38 43.01 5.34
1595 1959 3.058160 GGCAGCGCATCCAGTTGT 61.058 61.111 11.47 0.00 0.00 3.32
1636 2000 1.949847 CTCTTGCACCCGTCGATCCT 61.950 60.000 0.00 0.00 0.00 3.24
1770 2377 1.002468 CACCAGGAAAAGTCGCACAAG 60.002 52.381 0.00 0.00 0.00 3.16
1784 2391 1.047002 TGTTTGAAATGGCCACCAGG 58.953 50.000 8.16 0.00 36.75 4.45
1788 2395 3.747529 CCTTCATTGTTTGAAATGGCCAC 59.252 43.478 8.16 0.00 43.64 5.01
1850 2458 2.290641 AGACAGTGTCGTCCAAAATTGC 59.709 45.455 17.40 0.00 37.67 3.56
1861 2469 2.138320 ACTGCAATTCAGACAGTGTCG 58.862 47.619 17.40 12.33 45.72 4.35
1902 2510 5.801380 ACTACGGGTCTACATTTCACAATT 58.199 37.500 0.00 0.00 0.00 2.32
1916 2524 1.021390 TCCGACGAAGACTACGGGTC 61.021 60.000 0.00 3.13 44.57 4.46
1917 2525 1.003355 TCCGACGAAGACTACGGGT 60.003 57.895 0.00 0.00 44.57 5.28
1918 2526 1.720301 CTCCGACGAAGACTACGGG 59.280 63.158 0.00 0.00 44.57 5.28
1920 2528 0.377554 ATGCTCCGACGAAGACTACG 59.622 55.000 0.00 0.00 0.00 3.51
1945 2553 7.516198 AGTCAACTCAAGTCTGCAAATTTAT 57.484 32.000 0.00 0.00 0.00 1.40
1954 2562 6.450545 TCAGTCATTAGTCAACTCAAGTCTG 58.549 40.000 0.00 0.00 0.00 3.51
1985 2594 0.949105 GTCGCGGGTCAAGTCAACAT 60.949 55.000 6.13 0.00 0.00 2.71
1999 2608 1.654440 ATATGCTGTCGTCGTCGCG 60.654 57.895 0.00 0.00 36.96 5.87
2000 2609 0.591488 TCATATGCTGTCGTCGTCGC 60.591 55.000 0.00 0.00 36.96 5.19
2021 2630 3.409026 AACTGCTTCGAACCTCTCATT 57.591 42.857 0.00 0.00 0.00 2.57
2022 2631 3.244215 TGAAACTGCTTCGAACCTCTCAT 60.244 43.478 0.00 0.00 36.78 2.90
2023 2632 2.102420 TGAAACTGCTTCGAACCTCTCA 59.898 45.455 0.00 0.00 36.78 3.27
2024 2633 2.755650 TGAAACTGCTTCGAACCTCTC 58.244 47.619 0.00 0.00 36.78 3.20
2025 2634 2.910688 TGAAACTGCTTCGAACCTCT 57.089 45.000 0.00 0.00 36.78 3.69
2026 2635 4.489679 AAATGAAACTGCTTCGAACCTC 57.510 40.909 0.00 0.00 36.78 3.85
2027 2636 4.918810 AAAATGAAACTGCTTCGAACCT 57.081 36.364 0.00 0.00 36.78 3.50
2028 2637 5.040635 TGAAAAATGAAACTGCTTCGAACC 58.959 37.500 0.00 0.00 36.78 3.62
2029 2638 6.567769 TTGAAAAATGAAACTGCTTCGAAC 57.432 33.333 0.00 0.00 36.78 3.95
2030 2639 7.490725 TGATTTGAAAAATGAAACTGCTTCGAA 59.509 29.630 0.00 0.00 36.78 3.71
2031 2640 6.977502 TGATTTGAAAAATGAAACTGCTTCGA 59.022 30.769 0.00 0.00 36.78 3.71
2032 2641 7.164226 TGATTTGAAAAATGAAACTGCTTCG 57.836 32.000 0.00 0.00 36.78 3.79
2033 2642 7.067728 GCTGATTTGAAAAATGAAACTGCTTC 58.932 34.615 0.00 0.00 34.31 3.86
2034 2643 6.539464 TGCTGATTTGAAAAATGAAACTGCTT 59.461 30.769 0.00 0.00 0.00 3.91
2035 2644 6.050432 TGCTGATTTGAAAAATGAAACTGCT 58.950 32.000 0.00 0.00 0.00 4.24
2036 2645 6.289745 TGCTGATTTGAAAAATGAAACTGC 57.710 33.333 0.00 0.00 0.00 4.40
2037 2646 6.073440 CCCTGCTGATTTGAAAAATGAAACTG 60.073 38.462 0.00 0.00 0.00 3.16
2038 2647 5.993441 CCCTGCTGATTTGAAAAATGAAACT 59.007 36.000 0.00 0.00 0.00 2.66
2039 2648 5.990996 TCCCTGCTGATTTGAAAAATGAAAC 59.009 36.000 0.00 0.00 0.00 2.78
2040 2649 6.172136 TCCCTGCTGATTTGAAAAATGAAA 57.828 33.333 0.00 0.00 0.00 2.69
2041 2650 5.804944 TCCCTGCTGATTTGAAAAATGAA 57.195 34.783 0.00 0.00 0.00 2.57
2042 2651 5.540911 GTTCCCTGCTGATTTGAAAAATGA 58.459 37.500 0.00 0.00 0.00 2.57
2052 2661 2.044123 GGAATCGTTCCCTGCTGATT 57.956 50.000 5.71 0.00 44.30 2.57
2064 2673 0.330267 AAATGGAACCGGGGAATCGT 59.670 50.000 6.32 0.00 0.00 3.73
2067 2676 2.846665 ATGAAATGGAACCGGGGAAT 57.153 45.000 6.32 0.00 0.00 3.01
2088 2697 5.301805 TGGGGTTCTGAATCTTTGAGTTTTC 59.698 40.000 0.02 0.00 0.00 2.29
2091 2700 4.453480 TGGGGTTCTGAATCTTTGAGTT 57.547 40.909 0.02 0.00 0.00 3.01
2093 2702 3.507622 GGTTGGGGTTCTGAATCTTTGAG 59.492 47.826 0.02 0.00 0.00 3.02
2094 2703 3.117322 TGGTTGGGGTTCTGAATCTTTGA 60.117 43.478 0.02 0.00 0.00 2.69
2095 2704 3.230134 TGGTTGGGGTTCTGAATCTTTG 58.770 45.455 0.02 0.00 0.00 2.77
2096 2705 3.611025 TGGTTGGGGTTCTGAATCTTT 57.389 42.857 0.02 0.00 0.00 2.52
2124 2750 4.736126 AGTAAACAACAGCTTTGCCTTT 57.264 36.364 8.09 5.87 0.00 3.11
2133 2759 5.817816 AGTATGGCAGATAGTAAACAACAGC 59.182 40.000 0.00 0.00 0.00 4.40
2134 2760 8.198109 AGTAGTATGGCAGATAGTAAACAACAG 58.802 37.037 0.00 0.00 0.00 3.16
2136 2762 8.195436 TCAGTAGTATGGCAGATAGTAAACAAC 58.805 37.037 0.00 0.00 0.00 3.32
2138 2764 7.340999 TGTCAGTAGTATGGCAGATAGTAAACA 59.659 37.037 0.00 0.00 29.73 2.83
2139 2765 7.713750 TGTCAGTAGTATGGCAGATAGTAAAC 58.286 38.462 0.00 0.00 29.73 2.01
2140 2766 7.891498 TGTCAGTAGTATGGCAGATAGTAAA 57.109 36.000 0.00 0.00 29.73 2.01
2141 2767 7.891498 TTGTCAGTAGTATGGCAGATAGTAA 57.109 36.000 0.00 0.00 35.92 2.24
2142 2768 8.478775 AATTGTCAGTAGTATGGCAGATAGTA 57.521 34.615 0.00 0.00 35.92 1.82
2143 2769 6.985653 ATTGTCAGTAGTATGGCAGATAGT 57.014 37.500 0.00 0.00 35.92 2.12
2146 2772 6.893583 AGAAATTGTCAGTAGTATGGCAGAT 58.106 36.000 0.00 0.00 35.92 2.90
2149 2775 5.580691 CGAAGAAATTGTCAGTAGTATGGCA 59.419 40.000 0.00 0.00 31.66 4.92
2150 2776 5.006746 CCGAAGAAATTGTCAGTAGTATGGC 59.993 44.000 0.00 0.00 0.00 4.40
2151 2777 5.523916 CCCGAAGAAATTGTCAGTAGTATGG 59.476 44.000 0.00 0.00 0.00 2.74
2152 2778 6.106673 ACCCGAAGAAATTGTCAGTAGTATG 58.893 40.000 0.00 0.00 0.00 2.39
2153 2779 6.154706 AGACCCGAAGAAATTGTCAGTAGTAT 59.845 38.462 0.00 0.00 0.00 2.12
2159 2785 3.187227 CACAGACCCGAAGAAATTGTCAG 59.813 47.826 0.00 0.00 0.00 3.51
2171 2797 0.532573 GAGATTCAGCACAGACCCGA 59.467 55.000 0.00 0.00 0.00 5.14
2172 2798 0.460987 GGAGATTCAGCACAGACCCG 60.461 60.000 0.00 0.00 0.00 5.28
2174 2800 0.247736 ACGGAGATTCAGCACAGACC 59.752 55.000 0.00 0.00 0.00 3.85
2177 2803 1.638133 CAGACGGAGATTCAGCACAG 58.362 55.000 0.00 0.00 0.00 3.66
2181 3040 0.459489 AGAGCAGACGGAGATTCAGC 59.541 55.000 0.00 0.00 0.00 4.26
2190 3049 2.200067 GATCATCACAAGAGCAGACGG 58.800 52.381 0.00 0.00 0.00 4.79
2191 3050 2.200067 GGATCATCACAAGAGCAGACG 58.800 52.381 0.00 0.00 0.00 4.18
2195 3054 1.211212 CCTGGGATCATCACAAGAGCA 59.789 52.381 0.00 0.00 0.00 4.26
2207 3066 2.592308 GGAGCCACACCTGGGATC 59.408 66.667 0.00 0.00 40.08 3.36
2208 3067 3.402681 CGGAGCCACACCTGGGAT 61.403 66.667 0.00 0.00 38.13 3.85
2209 3068 4.954118 ACGGAGCCACACCTGGGA 62.954 66.667 0.00 0.00 38.13 4.37
2210 3069 4.394712 GACGGAGCCACACCTGGG 62.395 72.222 0.00 0.00 38.13 4.45
2211 3070 2.788191 GAAGACGGAGCCACACCTGG 62.788 65.000 0.00 0.00 41.13 4.45
2253 3112 4.100084 TGCACATCCCCTCTGCCG 62.100 66.667 0.00 0.00 0.00 5.69
2297 3156 1.360551 CGGCCTCGAGTGGTATGAG 59.639 63.158 12.31 0.00 39.00 2.90
2311 3170 2.668550 ACGAGTTCAAAGCCGGCC 60.669 61.111 26.15 6.38 0.00 6.13
2338 3197 2.564721 GGAAAGGCAAGCGCTTGGT 61.565 57.895 41.83 13.61 40.74 3.67
2348 3207 1.289066 CACGAGTCGAGGAAAGGCA 59.711 57.895 21.50 0.00 0.00 4.75
2377 3236 5.180117 CCGACTGAAAAGAATTCACATGACT 59.820 40.000 8.44 0.00 0.00 3.41
2385 3244 4.222114 CAAGCACCGACTGAAAAGAATTC 58.778 43.478 0.00 0.00 0.00 2.17
2389 3248 2.325583 ACAAGCACCGACTGAAAAGA 57.674 45.000 0.00 0.00 0.00 2.52
2394 3253 2.254546 AATCAACAAGCACCGACTGA 57.745 45.000 0.00 0.00 0.00 3.41
2395 3254 3.003689 AGAAAATCAACAAGCACCGACTG 59.996 43.478 0.00 0.00 0.00 3.51
2396 3255 3.214328 AGAAAATCAACAAGCACCGACT 58.786 40.909 0.00 0.00 0.00 4.18
2397 3256 3.626028 AGAAAATCAACAAGCACCGAC 57.374 42.857 0.00 0.00 0.00 4.79
2398 3257 4.647424 AAAGAAAATCAACAAGCACCGA 57.353 36.364 0.00 0.00 0.00 4.69
2399 3258 5.519927 AGAAAAAGAAAATCAACAAGCACCG 59.480 36.000 0.00 0.00 0.00 4.94
2400 3259 6.908870 AGAAAAAGAAAATCAACAAGCACC 57.091 33.333 0.00 0.00 0.00 5.01
2401 3260 9.054191 CAAAAGAAAAAGAAAATCAACAAGCAC 57.946 29.630 0.00 0.00 0.00 4.40
2402 3261 7.750014 GCAAAAGAAAAAGAAAATCAACAAGCA 59.250 29.630 0.00 0.00 0.00 3.91
2403 3262 7.045419 CGCAAAAGAAAAAGAAAATCAACAAGC 60.045 33.333 0.00 0.00 0.00 4.01
2404 3263 7.426169 CCGCAAAAGAAAAAGAAAATCAACAAG 59.574 33.333 0.00 0.00 0.00 3.16
2405 3264 7.239972 CCGCAAAAGAAAAAGAAAATCAACAA 58.760 30.769 0.00 0.00 0.00 2.83
2406 3265 6.183360 CCCGCAAAAGAAAAAGAAAATCAACA 60.183 34.615 0.00 0.00 0.00 3.33
2407 3266 6.191661 CCCGCAAAAGAAAAAGAAAATCAAC 58.808 36.000 0.00 0.00 0.00 3.18
2408 3267 5.220758 GCCCGCAAAAGAAAAAGAAAATCAA 60.221 36.000 0.00 0.00 0.00 2.57
2409 3268 4.272261 GCCCGCAAAAGAAAAAGAAAATCA 59.728 37.500 0.00 0.00 0.00 2.57
2410 3269 4.511454 AGCCCGCAAAAGAAAAAGAAAATC 59.489 37.500 0.00 0.00 0.00 2.17
2411 3270 4.273235 CAGCCCGCAAAAGAAAAAGAAAAT 59.727 37.500 0.00 0.00 0.00 1.82
2412 3271 3.620821 CAGCCCGCAAAAGAAAAAGAAAA 59.379 39.130 0.00 0.00 0.00 2.29
2413 3272 3.118956 TCAGCCCGCAAAAGAAAAAGAAA 60.119 39.130 0.00 0.00 0.00 2.52
2414 3273 2.428890 TCAGCCCGCAAAAGAAAAAGAA 59.571 40.909 0.00 0.00 0.00 2.52
2415 3274 2.028130 TCAGCCCGCAAAAGAAAAAGA 58.972 42.857 0.00 0.00 0.00 2.52
2416 3275 2.127251 GTCAGCCCGCAAAAGAAAAAG 58.873 47.619 0.00 0.00 0.00 2.27
2417 3276 1.535015 CGTCAGCCCGCAAAAGAAAAA 60.535 47.619 0.00 0.00 0.00 1.94
2418 3277 0.030101 CGTCAGCCCGCAAAAGAAAA 59.970 50.000 0.00 0.00 0.00 2.29
2419 3278 0.816018 TCGTCAGCCCGCAAAAGAAA 60.816 50.000 0.00 0.00 0.00 2.52
2420 3279 0.605319 ATCGTCAGCCCGCAAAAGAA 60.605 50.000 0.00 0.00 0.00 2.52
2421 3280 0.605319 AATCGTCAGCCCGCAAAAGA 60.605 50.000 0.00 0.00 0.00 2.52
2422 3281 0.454957 CAATCGTCAGCCCGCAAAAG 60.455 55.000 0.00 0.00 0.00 2.27
2423 3282 1.169661 ACAATCGTCAGCCCGCAAAA 61.170 50.000 0.00 0.00 0.00 2.44
2424 3283 1.169661 AACAATCGTCAGCCCGCAAA 61.170 50.000 0.00 0.00 0.00 3.68
2425 3284 1.599518 AACAATCGTCAGCCCGCAA 60.600 52.632 0.00 0.00 0.00 4.85
2426 3285 2.031919 AACAATCGTCAGCCCGCA 59.968 55.556 0.00 0.00 0.00 5.69
2427 3286 1.573829 TTCAACAATCGTCAGCCCGC 61.574 55.000 0.00 0.00 0.00 6.13
2428 3287 1.062587 GATTCAACAATCGTCAGCCCG 59.937 52.381 0.00 0.00 29.20 6.13
2429 3288 2.832672 GATTCAACAATCGTCAGCCC 57.167 50.000 0.00 0.00 29.20 5.19
2438 3297 8.276325 GCTAATTAACTCGATCGATTCAACAAT 58.724 33.333 19.78 9.47 0.00 2.71
2446 3305 6.821031 AGGTAGCTAATTAACTCGATCGAT 57.179 37.500 19.78 7.42 0.00 3.59
2447 3306 6.630444 AAGGTAGCTAATTAACTCGATCGA 57.370 37.500 18.32 18.32 0.00 3.59
2448 3307 7.859377 TGTTAAGGTAGCTAATTAACTCGATCG 59.141 37.037 26.99 9.36 39.20 3.69
2449 3308 9.182933 CTGTTAAGGTAGCTAATTAACTCGATC 57.817 37.037 26.99 12.44 39.20 3.69
2450 3309 8.693625 ACTGTTAAGGTAGCTAATTAACTCGAT 58.306 33.333 26.99 15.76 39.20 3.59
2451 3310 7.972277 CACTGTTAAGGTAGCTAATTAACTCGA 59.028 37.037 26.99 15.73 39.20 4.04
2452 3311 7.972277 TCACTGTTAAGGTAGCTAATTAACTCG 59.028 37.037 26.99 22.42 39.20 4.18
2453 3312 9.085250 GTCACTGTTAAGGTAGCTAATTAACTC 57.915 37.037 26.99 13.80 39.20 3.01
2454 3313 8.591072 TGTCACTGTTAAGGTAGCTAATTAACT 58.409 33.333 26.99 15.34 39.20 2.24
2455 3314 8.767478 TGTCACTGTTAAGGTAGCTAATTAAC 57.233 34.615 23.56 23.56 39.01 2.01
2456 3315 9.781633 TTTGTCACTGTTAAGGTAGCTAATTAA 57.218 29.630 0.00 1.63 0.00 1.40
2457 3316 9.781633 TTTTGTCACTGTTAAGGTAGCTAATTA 57.218 29.630 0.00 0.00 0.00 1.40
2458 3317 8.685838 TTTTGTCACTGTTAAGGTAGCTAATT 57.314 30.769 0.00 0.00 0.00 1.40
2459 3318 8.685838 TTTTTGTCACTGTTAAGGTAGCTAAT 57.314 30.769 0.00 0.00 0.00 1.73
2511 3370 9.809096 CTCACTCTGTAACTTAATACATGATGT 57.191 33.333 2.65 2.65 35.37 3.06
2512 3371 9.809096 ACTCACTCTGTAACTTAATACATGATG 57.191 33.333 0.00 0.00 35.37 3.07
2526 3385 9.658799 ACGTAGTAGTAAATACTCACTCTGTAA 57.341 33.333 0.00 0.00 43.90 2.41
2545 3404 1.139058 GGACGGAGGGAGTACGTAGTA 59.861 57.143 2.11 0.00 45.11 1.82
2547 3406 1.156645 CGGACGGAGGGAGTACGTAG 61.157 65.000 0.00 0.00 40.75 3.51
2548 3407 1.153369 CGGACGGAGGGAGTACGTA 60.153 63.158 0.00 0.00 40.75 3.57
2549 3408 2.437359 CGGACGGAGGGAGTACGT 60.437 66.667 0.00 0.00 40.75 3.57
2551 3410 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
2556 3483 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2573 3500 9.709495 TTCCCTTTTATTCATTTTGATGACAAG 57.291 29.630 0.00 0.00 37.32 3.16
2574 3501 9.487790 GTTCCCTTTTATTCATTTTGATGACAA 57.512 29.630 0.00 0.00 0.00 3.18
2577 3504 7.891561 ACGTTCCCTTTTATTCATTTTGATGA 58.108 30.769 0.00 0.00 0.00 2.92
2578 3505 9.801873 ATACGTTCCCTTTTATTCATTTTGATG 57.198 29.630 0.00 0.00 0.00 3.07
2581 3508 9.289303 CAGATACGTTCCCTTTTATTCATTTTG 57.711 33.333 0.00 0.00 0.00 2.44
2582 3509 9.238368 TCAGATACGTTCCCTTTTATTCATTTT 57.762 29.630 0.00 0.00 0.00 1.82
2628 3629 9.260002 GTCATCAAAATGGACAAAAAGTAATGT 57.740 29.630 0.00 0.00 33.42 2.71
2629 3630 9.258826 TGTCATCAAAATGGACAAAAAGTAATG 57.741 29.630 0.00 0.00 33.42 1.90
2632 3633 7.069331 ACCTGTCATCAAAATGGACAAAAAGTA 59.931 33.333 0.00 0.00 33.42 2.24
2633 3634 6.127083 ACCTGTCATCAAAATGGACAAAAAGT 60.127 34.615 0.00 0.00 33.42 2.66
2634 3635 6.282930 ACCTGTCATCAAAATGGACAAAAAG 58.717 36.000 0.00 0.00 33.42 2.27
2635 3636 6.232581 ACCTGTCATCAAAATGGACAAAAA 57.767 33.333 0.00 0.00 33.42 1.94
2636 3637 5.867903 ACCTGTCATCAAAATGGACAAAA 57.132 34.783 0.00 0.00 33.42 2.44
2637 3638 7.537596 AATACCTGTCATCAAAATGGACAAA 57.462 32.000 0.00 0.00 33.42 2.83
2638 3639 7.537596 AAATACCTGTCATCAAAATGGACAA 57.462 32.000 0.00 0.00 33.42 3.18
2639 3640 7.537596 AAAATACCTGTCATCAAAATGGACA 57.462 32.000 0.00 0.00 33.42 4.02
2640 3641 6.747280 CGAAAATACCTGTCATCAAAATGGAC 59.253 38.462 0.00 0.00 33.42 4.02
2641 3642 6.127758 CCGAAAATACCTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
2642 3643 6.035843 CCGAAAATACCTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
2643 3644 6.747280 GTCCGAAAATACCTGTCATCAAAATG 59.253 38.462 0.00 0.00 0.00 2.32
2644 3645 6.403200 CGTCCGAAAATACCTGTCATCAAAAT 60.403 38.462 0.00 0.00 0.00 1.82
2645 3646 5.106869 CGTCCGAAAATACCTGTCATCAAAA 60.107 40.000 0.00 0.00 0.00 2.44
2646 3647 4.390603 CGTCCGAAAATACCTGTCATCAAA 59.609 41.667 0.00 0.00 0.00 2.69
2647 3648 3.930229 CGTCCGAAAATACCTGTCATCAA 59.070 43.478 0.00 0.00 0.00 2.57
2648 3649 3.517602 CGTCCGAAAATACCTGTCATCA 58.482 45.455 0.00 0.00 0.00 3.07
2649 3650 2.864343 CCGTCCGAAAATACCTGTCATC 59.136 50.000 0.00 0.00 0.00 2.92
2650 3651 2.498481 TCCGTCCGAAAATACCTGTCAT 59.502 45.455 0.00 0.00 0.00 3.06
2651 3652 1.894466 TCCGTCCGAAAATACCTGTCA 59.106 47.619 0.00 0.00 0.00 3.58
2652 3653 2.537401 CTCCGTCCGAAAATACCTGTC 58.463 52.381 0.00 0.00 0.00 3.51
2653 3654 1.206371 CCTCCGTCCGAAAATACCTGT 59.794 52.381 0.00 0.00 0.00 4.00
2654 3655 1.472728 CCCTCCGTCCGAAAATACCTG 60.473 57.143 0.00 0.00 0.00 4.00
2655 3656 0.828677 CCCTCCGTCCGAAAATACCT 59.171 55.000 0.00 0.00 0.00 3.08
2656 3657 0.826062 TCCCTCCGTCCGAAAATACC 59.174 55.000 0.00 0.00 0.00 2.73
2657 3658 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2658 3659 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2659 3660 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
2660 3661 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
2661 3662 0.967380 GGTACTCCCTCCGTCCGAAA 60.967 60.000 0.00 0.00 0.00 3.46
2662 3663 1.379044 GGTACTCCCTCCGTCCGAA 60.379 63.158 0.00 0.00 0.00 4.30
2663 3664 2.273449 GGTACTCCCTCCGTCCGA 59.727 66.667 0.00 0.00 0.00 4.55
2664 3665 2.274760 AGGTACTCCCTCCGTCCG 59.725 66.667 0.00 0.00 40.71 4.79
2737 3738 7.676683 TGCTAGTCCCTCTGTAAAGAAATAT 57.323 36.000 0.00 0.00 0.00 1.28
2741 3742 5.084519 TCTTGCTAGTCCCTCTGTAAAGAA 58.915 41.667 0.00 0.00 0.00 2.52
2743 3744 5.407407 TTCTTGCTAGTCCCTCTGTAAAG 57.593 43.478 0.00 0.00 0.00 1.85
2747 3748 1.552792 GCTTCTTGCTAGTCCCTCTGT 59.447 52.381 0.00 0.00 38.95 3.41
2748 3749 1.552337 TGCTTCTTGCTAGTCCCTCTG 59.448 52.381 0.00 0.00 43.37 3.35
2749 3750 1.944177 TGCTTCTTGCTAGTCCCTCT 58.056 50.000 0.00 0.00 43.37 3.69
2750 3751 2.093235 ACATGCTTCTTGCTAGTCCCTC 60.093 50.000 0.00 0.00 43.37 4.30
2752 3753 2.012673 CACATGCTTCTTGCTAGTCCC 58.987 52.381 0.00 0.00 43.37 4.46
2753 3754 1.399791 GCACATGCTTCTTGCTAGTCC 59.600 52.381 0.00 0.00 43.37 3.85
2754 3755 1.061711 CGCACATGCTTCTTGCTAGTC 59.938 52.381 1.82 0.00 43.37 2.59
2755 3756 1.081892 CGCACATGCTTCTTGCTAGT 58.918 50.000 1.82 0.00 43.37 2.57
2756 3757 1.081892 ACGCACATGCTTCTTGCTAG 58.918 50.000 1.82 0.00 43.37 3.42
2757 3758 1.522668 AACGCACATGCTTCTTGCTA 58.477 45.000 1.82 0.00 43.37 3.49
2758 3759 0.670162 AAACGCACATGCTTCTTGCT 59.330 45.000 1.82 0.00 43.37 3.91
2760 3761 2.975851 GAGAAAACGCACATGCTTCTTG 59.024 45.455 7.91 0.00 34.55 3.02
2761 3762 2.349817 CGAGAAAACGCACATGCTTCTT 60.350 45.455 7.91 0.00 34.55 2.52
2762 3763 1.195448 CGAGAAAACGCACATGCTTCT 59.805 47.619 6.56 6.56 36.29 2.85
2766 3767 0.790207 TCTCGAGAAAACGCACATGC 59.210 50.000 14.01 0.00 37.78 4.06
2767 3768 2.061773 ACTCTCGAGAAAACGCACATG 58.938 47.619 17.36 3.02 0.00 3.21
2768 3769 2.440539 ACTCTCGAGAAAACGCACAT 57.559 45.000 17.36 0.00 0.00 3.21
2769 3770 2.658285 GTACTCTCGAGAAAACGCACA 58.342 47.619 17.36 0.00 0.00 4.57
2770 3771 1.642843 CGTACTCTCGAGAAAACGCAC 59.357 52.381 26.52 12.54 0.00 5.34
2771 3772 1.959747 CGTACTCTCGAGAAAACGCA 58.040 50.000 26.52 2.83 0.00 5.24
2772 3773 0.634232 GCGTACTCTCGAGAAAACGC 59.366 55.000 37.07 37.07 44.10 4.84
2773 3774 2.244281 AGCGTACTCTCGAGAAAACG 57.756 50.000 30.39 30.39 36.49 3.60
2774 3775 5.227598 GTCATTAGCGTACTCTCGAGAAAAC 59.772 44.000 17.36 15.43 0.00 2.43
2779 3780 2.284684 ACGTCATTAGCGTACTCTCGAG 59.715 50.000 5.93 5.93 41.06 4.04
2826 3827 7.639039 CATTACGCCAAACTTCATGTACATAT 58.361 34.615 8.32 0.00 0.00 1.78
2835 3836 1.514003 TCGCATTACGCCAAACTTCA 58.486 45.000 0.00 0.00 43.23 3.02
2842 3843 0.515127 CTTGTGTTCGCATTACGCCA 59.485 50.000 0.00 0.00 43.23 5.69
2846 3847 3.889196 TTGGTCTTGTGTTCGCATTAC 57.111 42.857 0.00 0.00 0.00 1.89
2849 3850 2.020720 TGTTTGGTCTTGTGTTCGCAT 58.979 42.857 0.00 0.00 0.00 4.73
2862 3863 1.892474 AGTGTGTGCTTTGTGTTTGGT 59.108 42.857 0.00 0.00 0.00 3.67
2865 3866 3.130340 CCCTTAGTGTGTGCTTTGTGTTT 59.870 43.478 0.00 0.00 0.00 2.83
2870 3871 0.598065 GGCCCTTAGTGTGTGCTTTG 59.402 55.000 0.00 0.00 0.00 2.77
2871 3872 0.478507 AGGCCCTTAGTGTGTGCTTT 59.521 50.000 0.00 0.00 0.00 3.51
2873 3874 1.358152 TTAGGCCCTTAGTGTGTGCT 58.642 50.000 0.00 0.00 0.00 4.40
2874 3875 2.084546 CTTTAGGCCCTTAGTGTGTGC 58.915 52.381 0.00 0.00 0.00 4.57
2882 3883 4.781087 TGAGAAGTTAGCTTTAGGCCCTTA 59.219 41.667 0.00 0.00 43.05 2.69
2885 3886 3.271729 GTGAGAAGTTAGCTTTAGGCCC 58.728 50.000 0.00 0.00 43.05 5.80
2886 3887 3.939066 TGTGAGAAGTTAGCTTTAGGCC 58.061 45.455 0.00 0.00 43.05 5.19
2887 3888 5.941948 TTTGTGAGAAGTTAGCTTTAGGC 57.058 39.130 0.00 0.00 42.19 3.93
2892 3900 5.123344 ACAACGTTTTGTGAGAAGTTAGCTT 59.877 36.000 0.00 0.00 44.66 3.74
2910 3918 2.344872 GCGGGAGGGTTACAACGT 59.655 61.111 0.00 0.00 0.00 3.99
2926 3934 3.542629 GACTTGCAGGCGTTGGTGC 62.543 63.158 0.00 0.00 40.29 5.01
2931 3939 0.250901 AATGGAGACTTGCAGGCGTT 60.251 50.000 0.00 0.00 0.00 4.84
2934 3942 0.034670 AGGAATGGAGACTTGCAGGC 60.035 55.000 0.00 0.00 0.00 4.85
2952 3960 2.409651 GTGCTCGCCGAGGTAGAG 59.590 66.667 16.95 10.74 35.28 2.43
2961 3969 3.426568 GCTGACAAGGTGCTCGCC 61.427 66.667 0.00 0.00 0.00 5.54
2976 3984 1.121407 TGACACCTACTGCACTGGCT 61.121 55.000 0.00 0.00 41.91 4.75
2981 3989 2.240493 ACAAGTGACACCTACTGCAC 57.760 50.000 0.84 0.00 0.00 4.57
3015 4023 0.693049 AGAGGAATGCTCGGGTGTTT 59.307 50.000 0.00 0.00 0.00 2.83
3039 4047 3.088532 GGCTACAACATGGTCCATTTGA 58.911 45.455 22.83 12.08 0.00 2.69
3051 4059 1.134340 ACTTTGGTCACGGCTACAACA 60.134 47.619 0.00 0.00 0.00 3.33
3054 4062 0.466543 ACACTTTGGTCACGGCTACA 59.533 50.000 0.00 0.00 0.00 2.74
3057 4065 1.594293 CGACACTTTGGTCACGGCT 60.594 57.895 0.00 0.00 37.66 5.52
3102 4110 1.203440 TGGCTTAGGGAAAGGAGGAGT 60.203 52.381 0.00 0.00 35.58 3.85
3146 4154 1.902918 AATGTGCAAGCGCCCTCAA 60.903 52.632 2.29 0.00 37.32 3.02
3186 4194 1.659794 CAAGGAAGTTTGGCACCGG 59.340 57.895 0.00 0.00 0.00 5.28
3246 4254 1.142748 CTTCGCCTGCCTTCGAGAT 59.857 57.895 0.00 0.00 36.02 2.75
3250 4258 3.031964 CTTGCTTCGCCTGCCTTCG 62.032 63.158 0.00 0.00 0.00 3.79
3330 4338 5.391312 AGATTTTTATGTGGTTGGCTGTC 57.609 39.130 0.00 0.00 0.00 3.51
3333 4341 4.040217 TGCAAGATTTTTATGTGGTTGGCT 59.960 37.500 0.00 0.00 0.00 4.75
3338 4346 7.095691 CGTTGAAATGCAAGATTTTTATGTGGT 60.096 33.333 0.00 0.00 37.12 4.16
3349 4357 2.610232 GGGCAACGTTGAAATGCAAGAT 60.610 45.455 31.62 0.00 41.80 2.40
3351 4359 1.139163 GGGCAACGTTGAAATGCAAG 58.861 50.000 31.62 2.06 41.80 4.01
3362 4370 2.032681 GGAGAAGCTGGGCAACGT 59.967 61.111 0.00 0.00 37.60 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.