Multiple sequence alignment - TraesCS5B01G213600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G213600 chr5B 100.000 5262 0 0 1 5262 386568003 386562742 0.000000e+00 9718.0
1 TraesCS5B01G213600 chr5B 100.000 2596 0 0 5652 8247 386562352 386559757 0.000000e+00 4795.0
2 TraesCS5B01G213600 chr5B 95.935 984 35 5 6652 7634 383521734 383520755 0.000000e+00 1591.0
3 TraesCS5B01G213600 chr5B 96.081 791 29 2 5652 6441 262051913 262051124 0.000000e+00 1288.0
4 TraesCS5B01G213600 chr5B 86.788 772 81 12 1869 2634 383528345 383527589 0.000000e+00 841.0
5 TraesCS5B01G213600 chr5B 82.515 835 95 20 3359 4156 383523636 383522816 0.000000e+00 686.0
6 TraesCS5B01G213600 chr5B 93.822 437 25 2 7741 8177 383514312 383513878 0.000000e+00 656.0
7 TraesCS5B01G213600 chr5B 87.873 536 45 10 4001 4527 383522815 383522291 5.470000e-171 612.0
8 TraesCS5B01G213600 chr5B 86.500 400 35 14 2972 3358 383524090 383523697 9.900000e-114 422.0
9 TraesCS5B01G213600 chr5B 90.343 321 22 5 4633 4953 383522255 383521944 5.960000e-111 412.0
10 TraesCS5B01G213600 chr5B 83.538 407 67 0 1204 1610 383529172 383528766 1.680000e-101 381.0
11 TraesCS5B01G213600 chr5B 81.948 349 35 16 2640 2969 383524576 383524237 3.790000e-68 270.0
12 TraesCS5B01G213600 chr5B 86.829 205 20 5 3160 3357 386644688 386644892 1.080000e-53 222.0
13 TraesCS5B01G213600 chr5B 86.111 144 12 3 6447 6589 383521943 383521807 1.850000e-31 148.0
14 TraesCS5B01G213600 chr5A 91.115 3624 215 48 827 4368 426286511 426290109 0.000000e+00 4809.0
15 TraesCS5B01G213600 chr5A 89.628 1157 72 15 6924 8062 426310503 426311629 0.000000e+00 1428.0
16 TraesCS5B01G213600 chr5A 89.410 661 27 12 168 791 426285847 426286501 0.000000e+00 793.0
17 TraesCS5B01G213600 chr5A 92.510 494 31 3 6439 6928 426309608 426310099 0.000000e+00 702.0
18 TraesCS5B01G213600 chr5A 92.462 199 11 2 4633 4828 426291385 426291582 1.750000e-71 281.0
19 TraesCS5B01G213600 chr5A 88.725 204 17 5 3160 3357 426274249 426274452 2.300000e-60 244.0
20 TraesCS5B01G213600 chr5A 93.243 148 6 3 1 148 426285654 426285797 1.800000e-51 215.0
21 TraesCS5B01G213600 chr5A 94.737 114 4 1 4850 4963 426309511 426309622 8.510000e-40 176.0
22 TraesCS5B01G213600 chr5A 93.913 115 5 2 8022 8136 426311627 426311739 1.100000e-38 172.0
23 TraesCS5B01G213600 chr5A 94.444 90 4 1 4451 4539 426291297 426291386 4.010000e-28 137.0
24 TraesCS5B01G213600 chr5D 94.264 924 42 6 6652 7568 330713141 330714060 0.000000e+00 1402.0
25 TraesCS5B01G213600 chr5D 83.171 1129 131 31 1869 2969 330709593 330710690 0.000000e+00 977.0
26 TraesCS5B01G213600 chr5D 82.635 835 96 19 3359 4156 330711266 330712088 0.000000e+00 693.0
27 TraesCS5B01G213600 chr5D 87.687 536 46 9 4001 4527 330712089 330712613 2.550000e-169 606.0
28 TraesCS5B01G213600 chr5D 93.103 406 23 5 7775 8179 330716700 330717101 2.560000e-164 590.0
29 TraesCS5B01G213600 chr5D 83.178 428 71 1 1180 1607 330708743 330709169 2.790000e-104 390.0
30 TraesCS5B01G213600 chr5D 86.207 348 34 10 2972 3311 330710838 330711179 1.690000e-96 364.0
31 TraesCS5B01G213600 chr5D 89.744 273 19 6 4681 4953 330712661 330712924 2.850000e-89 340.0
32 TraesCS5B01G213600 chr5D 89.583 144 14 1 6447 6589 330712925 330713068 1.830000e-41 182.0
33 TraesCS5B01G213600 chr5D 94.340 106 4 1 7590 7693 330716562 330716667 2.380000e-35 161.0
34 TraesCS5B01G213600 chr1A 96.329 790 27 2 5652 6440 23183552 23184340 0.000000e+00 1297.0
35 TraesCS5B01G213600 chr1A 95.823 790 31 2 5652 6440 300941034 300940246 0.000000e+00 1275.0
36 TraesCS5B01G213600 chr1A 95.911 269 9 2 4985 5252 23183176 23183443 1.270000e-117 435.0
37 TraesCS5B01G213600 chr1A 90.099 101 10 0 4538 4638 347943214 347943314 1.870000e-26 132.0
38 TraesCS5B01G213600 chr1A 89.320 103 11 0 4536 4638 474641675 474641777 6.720000e-26 130.0
39 TraesCS5B01G213600 chr1A 88.679 106 11 1 4532 4637 577690497 577690601 2.420000e-25 128.0
40 TraesCS5B01G213600 chr2B 96.203 790 29 1 5652 6440 9093249 9092460 0.000000e+00 1291.0
41 TraesCS5B01G213600 chr2B 96.419 782 26 2 5652 6432 27623991 27624771 0.000000e+00 1288.0
42 TraesCS5B01G213600 chr2B 95.311 789 36 1 5652 6439 744085370 744086158 0.000000e+00 1251.0
43 TraesCS5B01G213600 chr2B 96.269 268 8 1 4985 5252 765484734 765484999 9.830000e-119 438.0
44 TraesCS5B01G213600 chr7A 95.685 788 32 2 5652 6437 9011517 9010730 0.000000e+00 1266.0
45 TraesCS5B01G213600 chr1B 95.685 788 32 2 5652 6438 27285196 27285982 0.000000e+00 1266.0
46 TraesCS5B01G213600 chr1B 94.776 268 13 1 4985 5252 49616483 49616217 4.600000e-112 416.0
47 TraesCS5B01G213600 chr1B 90.476 105 9 1 4536 4640 679750767 679750870 4.010000e-28 137.0
48 TraesCS5B01G213600 chr1B 90.099 101 10 0 4535 4635 429279006 429278906 1.870000e-26 132.0
49 TraesCS5B01G213600 chr7B 95.316 790 35 2 5652 6440 684078160 684078948 0.000000e+00 1253.0
50 TraesCS5B01G213600 chr6B 96.679 271 8 1 4982 5252 23291781 23291512 4.540000e-122 449.0
51 TraesCS5B01G213600 chr7D 95.941 271 9 2 4984 5252 382651814 382651544 9.830000e-119 438.0
52 TraesCS5B01G213600 chr2A 95.880 267 10 1 4985 5250 578667853 578667587 1.640000e-116 431.0
53 TraesCS5B01G213600 chr2D 95.865 266 10 1 4987 5252 21620792 21620528 5.910000e-116 429.0
54 TraesCS5B01G213600 chr2D 90.099 101 10 0 4535 4635 267347147 267347247 1.870000e-26 132.0
55 TraesCS5B01G213600 chr3A 95.833 264 10 1 4989 5252 725055692 725055954 7.650000e-115 425.0
56 TraesCS5B01G213600 chr3A 94.505 273 11 3 4982 5252 691368780 691368510 1.280000e-112 418.0
57 TraesCS5B01G213600 chr1D 91.000 100 9 0 4537 4636 483907679 483907580 1.440000e-27 135.0
58 TraesCS5B01G213600 chr3B 88.785 107 11 1 4534 4639 548846945 548846839 6.720000e-26 130.0
59 TraesCS5B01G213600 chr3B 86.207 116 16 0 4537 4652 240275332 240275217 8.690000e-25 126.0
60 TraesCS5B01G213600 chr3B 100.000 29 0 0 8219 8247 546059425 546059453 4.000000e-03 54.7
61 TraesCS5B01G213600 chr4A 100.000 30 0 0 8218 8247 726290429 726290400 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G213600 chr5B 386559757 386568003 8246 True 7256.500000 9718 100.0000 1 8247 2 chr5B.!!$R4 8246
1 TraesCS5B01G213600 chr5B 262051124 262051913 789 True 1288.000000 1288 96.0810 5652 6441 1 chr5B.!!$R1 789
2 TraesCS5B01G213600 chr5B 383520755 383529172 8417 True 595.888889 1591 86.8390 1204 7634 9 chr5B.!!$R3 6430
3 TraesCS5B01G213600 chr5A 426285654 426291582 5928 False 1247.000000 4809 92.1348 1 4828 5 chr5A.!!$F2 4827
4 TraesCS5B01G213600 chr5A 426309511 426311739 2228 False 619.500000 1428 92.6970 4850 8136 4 chr5A.!!$F3 3286
5 TraesCS5B01G213600 chr5D 330708743 330717101 8358 False 570.500000 1402 88.3912 1180 8179 10 chr5D.!!$F1 6999
6 TraesCS5B01G213600 chr1A 300940246 300941034 788 True 1275.000000 1275 95.8230 5652 6440 1 chr1A.!!$R1 788
7 TraesCS5B01G213600 chr1A 23183176 23184340 1164 False 866.000000 1297 96.1200 4985 6440 2 chr1A.!!$F4 1455
8 TraesCS5B01G213600 chr2B 9092460 9093249 789 True 1291.000000 1291 96.2030 5652 6440 1 chr2B.!!$R1 788
9 TraesCS5B01G213600 chr2B 27623991 27624771 780 False 1288.000000 1288 96.4190 5652 6432 1 chr2B.!!$F1 780
10 TraesCS5B01G213600 chr2B 744085370 744086158 788 False 1251.000000 1251 95.3110 5652 6439 1 chr2B.!!$F2 787
11 TraesCS5B01G213600 chr7A 9010730 9011517 787 True 1266.000000 1266 95.6850 5652 6437 1 chr7A.!!$R1 785
12 TraesCS5B01G213600 chr1B 27285196 27285982 786 False 1266.000000 1266 95.6850 5652 6438 1 chr1B.!!$F1 786
13 TraesCS5B01G213600 chr7B 684078160 684078948 788 False 1253.000000 1253 95.3160 5652 6440 1 chr7B.!!$F1 788

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
973 1056 0.035915 TCCGGGCAATCACGAATTCA 60.036 50.0 0.00 0.00 0.00 2.57 F
974 1057 0.098728 CCGGGCAATCACGAATTCAC 59.901 55.0 6.22 0.00 0.00 3.18 F
1431 1546 0.107654 GGCGGAGAAATACCACAGCT 60.108 55.0 0.00 0.00 0.00 4.24 F
2350 2646 0.110644 GGAGCTTGAACGTTGCTTCG 60.111 55.0 5.00 0.15 37.16 3.79 F
3905 7476 0.986527 ATCTGATGGTGCACAGGACA 59.013 50.0 20.43 7.64 35.20 4.02 F
4555 9392 0.042131 ATACTCCCTCCGTCCCAACA 59.958 55.0 0.00 0.00 0.00 3.33 F
4758 9598 0.179001 TCAGTCACTCAGGTGGTCGA 60.179 55.0 0.00 0.00 43.17 4.20 F
4979 9819 0.242825 TCCGTAAGTTCTCACTGCGG 59.757 55.0 10.60 10.60 46.11 5.69 F
6490 11348 0.249826 GGGATGCTGCTGCTCTAGAC 60.250 60.0 17.00 1.62 40.48 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2517 2813 0.102300 GGTGTCCAAACAAGGCACAC 59.898 55.000 0.00 0.00 37.08 3.82 R
2787 6097 1.358787 AGGATCCACAAATGGCTTCCA 59.641 47.619 15.82 0.00 46.80 3.53 R
3430 6974 1.067974 GTTTTACACACCTGTTGGCCC 59.932 52.381 0.00 0.00 36.63 5.80 R
4325 8054 0.690762 TTTTTCGGGACCCTCCTCTG 59.309 55.000 9.41 0.00 36.57 3.35 R
4831 9671 0.100682 CATGATGAGCTTGGCAGTGC 59.899 55.000 6.55 6.55 0.00 4.40 R
6529 11387 0.257039 ATGGCCCATGTTCAGAGGAC 59.743 55.000 0.00 0.00 0.00 3.85 R
6586 11444 1.071699 TGAGTTGGAGGAAAAGTCCCG 59.928 52.381 0.00 0.00 46.30 5.14 R
6587 11445 2.951229 TGAGTTGGAGGAAAAGTCCC 57.049 50.000 0.00 0.00 46.30 4.46 R
7692 15495 0.107165 GGGGGTGTCAGGTTCATAGC 60.107 60.000 0.00 0.00 0.00 2.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.674852 AGTGCAAATCGTACATCAGCAG 59.325 45.455 0.00 0.00 31.60 4.24
56 57 1.681327 CATCAGCAGCTGCCCCTTT 60.681 57.895 34.39 13.75 43.38 3.11
97 98 1.881973 GAGCACCTCAATCTGCAACAA 59.118 47.619 0.00 0.00 35.73 2.83
107 108 2.798976 TCTGCAACAAACCAATCAGC 57.201 45.000 0.00 0.00 0.00 4.26
108 109 2.309613 TCTGCAACAAACCAATCAGCT 58.690 42.857 0.00 0.00 0.00 4.24
109 110 3.485394 TCTGCAACAAACCAATCAGCTA 58.515 40.909 0.00 0.00 0.00 3.32
110 111 3.253188 TCTGCAACAAACCAATCAGCTAC 59.747 43.478 0.00 0.00 0.00 3.58
116 117 3.758554 ACAAACCAATCAGCTACCACATC 59.241 43.478 0.00 0.00 0.00 3.06
126 127 4.040339 TCAGCTACCACATCAAGAAACTCA 59.960 41.667 0.00 0.00 0.00 3.41
152 153 9.764363 AGTGAAATAATATTGATAACTCGCAGA 57.236 29.630 0.00 0.00 0.00 4.26
165 166 1.865865 TCGCAGAGAATTAATCGGCC 58.134 50.000 0.00 0.00 34.85 6.13
166 167 1.138069 TCGCAGAGAATTAATCGGCCA 59.862 47.619 2.24 0.00 34.85 5.36
168 169 1.876156 GCAGAGAATTAATCGGCCAGG 59.124 52.381 2.24 0.00 32.56 4.45
169 170 1.876156 CAGAGAATTAATCGGCCAGGC 59.124 52.381 1.26 1.26 0.00 4.85
225 256 1.690283 CGCTGTCGTGCTTCCTGATG 61.690 60.000 0.00 0.00 0.00 3.07
231 262 1.474478 TCGTGCTTCCTGATGAGAGTC 59.526 52.381 0.00 0.00 0.00 3.36
256 287 1.890979 GTCATGATCCAGGCCGCAG 60.891 63.158 0.00 0.00 0.00 5.18
341 372 2.042831 AGCAAGGCAGCAACGGATC 61.043 57.895 4.78 0.00 36.85 3.36
372 403 1.300931 GAGAGGCGAACACACAGCA 60.301 57.895 0.00 0.00 0.00 4.41
373 404 1.287730 GAGAGGCGAACACACAGCAG 61.288 60.000 0.00 0.00 0.00 4.24
374 405 1.300931 GAGGCGAACACACAGCAGA 60.301 57.895 0.00 0.00 0.00 4.26
392 423 1.822990 AGAAGATTGCACAATGCCCAG 59.177 47.619 0.00 0.00 44.23 4.45
405 436 2.113139 CCCAGTTGGTGAAGCCGT 59.887 61.111 0.00 0.00 41.21 5.68
502 533 0.525668 CCTCCTCCGTGAAATCGTCG 60.526 60.000 0.00 0.00 0.00 5.12
514 545 1.306642 AATCGTCGTCGGAGCTGTCT 61.307 55.000 1.55 0.00 37.69 3.41
521 552 1.683707 TCGGAGCTGTCTCTGGCAT 60.684 57.895 0.00 0.00 44.15 4.40
529 560 0.323816 TGTCTCTGGCATCGGAGTCT 60.324 55.000 2.63 0.00 44.66 3.24
530 561 0.383949 GTCTCTGGCATCGGAGTCTC 59.616 60.000 2.63 0.00 44.66 3.36
605 648 1.090052 GCGAAGGCGAATTGCTAGGT 61.090 55.000 0.00 0.00 45.43 3.08
614 657 2.798499 CGAATTGCTAGGTAGGTCACGG 60.798 54.545 0.00 0.00 0.00 4.94
617 660 0.260816 TGCTAGGTAGGTCACGGGAT 59.739 55.000 0.00 0.00 0.00 3.85
625 668 3.196254 GGTAGGTCACGGGATAAACAGAA 59.804 47.826 0.00 0.00 0.00 3.02
627 670 4.360951 AGGTCACGGGATAAACAGAAAA 57.639 40.909 0.00 0.00 0.00 2.29
693 755 0.794473 GGTTGTTGTACTACCTGCGC 59.206 55.000 0.00 0.00 40.18 6.09
716 778 1.903877 CGTCCTTGGGTGGCATCTCT 61.904 60.000 0.00 0.00 0.00 3.10
806 874 4.388499 GGCGGGAACTCGGAGCAA 62.388 66.667 4.58 0.00 0.00 3.91
807 875 2.125106 GCGGGAACTCGGAGCAAT 60.125 61.111 4.58 0.00 0.00 3.56
808 876 2.174319 GCGGGAACTCGGAGCAATC 61.174 63.158 4.58 1.35 0.00 2.67
809 877 1.878522 CGGGAACTCGGAGCAATCG 60.879 63.158 4.58 1.21 0.00 3.34
810 878 1.521681 GGGAACTCGGAGCAATCGG 60.522 63.158 4.58 0.00 0.00 4.18
811 879 1.515954 GGAACTCGGAGCAATCGGA 59.484 57.895 4.58 0.00 0.00 4.55
812 880 0.806492 GGAACTCGGAGCAATCGGAC 60.806 60.000 4.58 0.00 0.00 4.79
813 881 1.140407 GAACTCGGAGCAATCGGACG 61.140 60.000 4.58 0.00 0.00 4.79
814 882 1.592400 AACTCGGAGCAATCGGACGA 61.592 55.000 4.58 0.00 0.00 4.20
815 883 1.298713 CTCGGAGCAATCGGACGAG 60.299 63.158 0.00 0.00 43.85 4.18
816 884 1.747745 TCGGAGCAATCGGACGAGA 60.748 57.895 0.00 0.00 0.00 4.04
817 885 1.138883 CGGAGCAATCGGACGAGAA 59.861 57.895 0.00 0.00 0.00 2.87
818 886 0.457853 CGGAGCAATCGGACGAGAAA 60.458 55.000 0.00 0.00 0.00 2.52
819 887 1.281899 GGAGCAATCGGACGAGAAAG 58.718 55.000 0.00 0.00 0.00 2.62
820 888 1.135083 GGAGCAATCGGACGAGAAAGA 60.135 52.381 0.00 0.00 0.00 2.52
821 889 1.921230 GAGCAATCGGACGAGAAAGAC 59.079 52.381 0.00 0.00 0.00 3.01
822 890 1.000145 GCAATCGGACGAGAAAGACC 59.000 55.000 0.00 0.00 0.00 3.85
823 891 1.641577 CAATCGGACGAGAAAGACCC 58.358 55.000 0.00 0.00 0.00 4.46
824 892 0.535797 AATCGGACGAGAAAGACCCC 59.464 55.000 0.00 0.00 0.00 4.95
825 893 0.613853 ATCGGACGAGAAAGACCCCA 60.614 55.000 0.00 0.00 0.00 4.96
829 897 0.321996 GACGAGAAAGACCCCAAGCT 59.678 55.000 0.00 0.00 0.00 3.74
835 903 2.432174 AAAGACCCCAAGCTGAGGCC 62.432 60.000 0.00 0.00 39.73 5.19
897 965 3.134127 GCCAGCCCGCAAACTAGG 61.134 66.667 0.00 0.00 0.00 3.02
899 967 1.303317 CCAGCCCGCAAACTAGGTT 60.303 57.895 0.00 0.00 0.00 3.50
900 968 0.893727 CCAGCCCGCAAACTAGGTTT 60.894 55.000 0.00 0.00 36.05 3.27
901 969 0.958822 CAGCCCGCAAACTAGGTTTT 59.041 50.000 0.00 0.00 33.10 2.43
938 1019 1.943340 GATCATTTCGTGGCCCTTCTC 59.057 52.381 0.00 0.00 0.00 2.87
940 1021 1.032114 CATTTCGTGGCCCTTCTCCC 61.032 60.000 0.00 0.00 0.00 4.30
969 1052 0.461870 CATCTCCGGGCAATCACGAA 60.462 55.000 0.00 0.00 0.00 3.85
970 1053 0.469917 ATCTCCGGGCAATCACGAAT 59.530 50.000 0.00 0.00 0.00 3.34
971 1054 0.251916 TCTCCGGGCAATCACGAATT 59.748 50.000 0.00 0.00 0.00 2.17
972 1055 0.657840 CTCCGGGCAATCACGAATTC 59.342 55.000 0.00 0.00 0.00 2.17
973 1056 0.035915 TCCGGGCAATCACGAATTCA 60.036 50.000 0.00 0.00 0.00 2.57
974 1057 0.098728 CCGGGCAATCACGAATTCAC 59.901 55.000 6.22 0.00 0.00 3.18
975 1058 0.247655 CGGGCAATCACGAATTCACG 60.248 55.000 6.22 0.00 39.31 4.35
976 1059 1.083489 GGGCAATCACGAATTCACGA 58.917 50.000 6.22 1.13 37.03 4.35
990 1073 5.523916 CGAATTCACGATCAAACCCTAATCT 59.476 40.000 6.22 0.00 35.09 2.40
994 1077 5.800296 TCACGATCAAACCCTAATCTCAAA 58.200 37.500 0.00 0.00 0.00 2.69
1008 1091 4.620589 ATCTCAAATCTCGATGGATGCT 57.379 40.909 0.00 0.00 0.00 3.79
1023 1106 2.747460 GCTGAACCCGAGCATGCA 60.747 61.111 21.98 0.00 36.40 3.96
1051 1140 4.767255 CTCCGGGCCAGCACACTC 62.767 72.222 4.39 0.00 0.00 3.51
1077 1166 3.337605 TGGTAAGTGGTAACCCCTCTCTA 59.662 47.826 0.00 0.00 36.01 2.43
1079 1168 4.588106 GGTAAGTGGTAACCCCTCTCTATC 59.412 50.000 0.00 0.00 36.01 2.08
1080 1169 4.628661 AAGTGGTAACCCCTCTCTATCT 57.371 45.455 0.00 0.00 36.01 1.98
1083 1172 3.892588 GTGGTAACCCCTCTCTATCTCTG 59.107 52.174 0.00 0.00 0.00 3.35
1084 1173 2.894765 GGTAACCCCTCTCTATCTCTGC 59.105 54.545 0.00 0.00 0.00 4.26
1085 1174 2.095604 AACCCCTCTCTATCTCTGCC 57.904 55.000 0.00 0.00 0.00 4.85
1087 1176 0.189574 CCCCTCTCTATCTCTGCCCA 59.810 60.000 0.00 0.00 0.00 5.36
1088 1177 1.631405 CCCTCTCTATCTCTGCCCAG 58.369 60.000 0.00 0.00 0.00 4.45
1115 1225 1.727511 CCCAAATGATCACCGCGCAT 61.728 55.000 8.75 0.00 0.00 4.73
1117 1227 1.536766 CCAAATGATCACCGCGCATAT 59.463 47.619 8.75 0.00 0.00 1.78
1119 1229 3.188254 CCAAATGATCACCGCGCATATAA 59.812 43.478 8.75 0.00 0.00 0.98
1121 1231 4.668576 AATGATCACCGCGCATATAAAG 57.331 40.909 8.75 0.00 0.00 1.85
1122 1232 3.378911 TGATCACCGCGCATATAAAGA 57.621 42.857 8.75 0.00 0.00 2.52
1123 1233 3.317150 TGATCACCGCGCATATAAAGAG 58.683 45.455 8.75 0.00 0.00 2.85
1124 1234 2.148916 TCACCGCGCATATAAAGAGG 57.851 50.000 8.75 0.00 0.00 3.69
1125 1235 1.684450 TCACCGCGCATATAAAGAGGA 59.316 47.619 8.75 0.00 0.00 3.71
1128 1243 2.102588 ACCGCGCATATAAAGAGGAGTT 59.897 45.455 8.75 0.00 0.00 3.01
1147 1262 2.737252 GTTGTGCAGTAACTCTACAGCC 59.263 50.000 6.53 0.00 39.22 4.85
1151 1266 4.221924 TGTGCAGTAACTCTACAGCCATTA 59.778 41.667 0.00 0.00 39.22 1.90
1152 1267 5.175859 GTGCAGTAACTCTACAGCCATTAA 58.824 41.667 0.00 0.00 39.22 1.40
1153 1268 5.817816 GTGCAGTAACTCTACAGCCATTAAT 59.182 40.000 0.00 0.00 39.22 1.40
1155 1270 6.049149 GCAGTAACTCTACAGCCATTAATGA 58.951 40.000 17.23 0.00 35.17 2.57
1156 1271 6.708054 GCAGTAACTCTACAGCCATTAATGAT 59.292 38.462 17.23 2.23 35.17 2.45
1157 1272 7.227512 GCAGTAACTCTACAGCCATTAATGATT 59.772 37.037 17.23 1.58 35.17 2.57
1158 1273 9.113838 CAGTAACTCTACAGCCATTAATGATTT 57.886 33.333 17.23 1.30 0.00 2.17
1159 1274 9.113838 AGTAACTCTACAGCCATTAATGATTTG 57.886 33.333 17.23 13.09 0.00 2.32
1160 1275 9.109393 GTAACTCTACAGCCATTAATGATTTGA 57.891 33.333 17.23 6.39 0.00 2.69
1161 1276 8.757982 AACTCTACAGCCATTAATGATTTGAT 57.242 30.769 17.23 0.00 0.00 2.57
1233 1348 2.605580 GCAAAGGCACGGAAGAAAGAAG 60.606 50.000 0.00 0.00 40.72 2.85
1253 1368 2.904866 CGGAGGGCGAGAGAGGAG 60.905 72.222 0.00 0.00 0.00 3.69
1293 1408 1.154225 CGCATCCAAAACAGACGCC 60.154 57.895 0.00 0.00 0.00 5.68
1300 1415 2.076863 CCAAAACAGACGCCTAAGGAG 58.923 52.381 0.00 0.00 0.00 3.69
1319 1434 5.934781 AGGAGGCAATGTAAGATAAAGGAG 58.065 41.667 0.00 0.00 0.00 3.69
1343 1458 0.550914 AAGAAGTTGTGGACAGGGCA 59.449 50.000 0.00 0.00 0.00 5.36
1344 1459 0.773644 AGAAGTTGTGGACAGGGCAT 59.226 50.000 0.00 0.00 0.00 4.40
1350 1465 0.895100 TGTGGACAGGGCATTCAAGC 60.895 55.000 0.00 0.00 0.00 4.01
1352 1467 0.609957 TGGACAGGGCATTCAAGCTG 60.610 55.000 0.00 0.00 34.17 4.24
1384 1499 1.202463 GCTTCAGAAGAGGCTCGCATA 60.202 52.381 14.86 0.00 43.00 3.14
1421 1536 1.983224 CAAGGAGGAGGCGGAGAAA 59.017 57.895 0.00 0.00 0.00 2.52
1426 1541 1.120530 GAGGAGGCGGAGAAATACCA 58.879 55.000 0.00 0.00 0.00 3.25
1431 1546 0.107654 GGCGGAGAAATACCACAGCT 60.108 55.000 0.00 0.00 0.00 4.24
1481 1596 5.591877 AGTTCCCATTAGTGAGCATTTGATC 59.408 40.000 0.00 0.00 0.00 2.92
1492 1607 3.618351 AGCATTTGATCTCACCCTCTTG 58.382 45.455 0.00 0.00 0.00 3.02
1596 1715 3.440522 GTCACCAGGTTATTTGCTTCTCC 59.559 47.826 0.00 0.00 0.00 3.71
1660 1845 1.202615 GGTTTATCCCGTAGTGCCTCC 60.203 57.143 0.00 0.00 0.00 4.30
1734 1919 4.143389 CCGTACTTTGACGTTGATGAGTTC 60.143 45.833 0.00 0.00 41.31 3.01
1812 1997 0.388659 TTGCTCAATGTGTGGTTGGC 59.611 50.000 0.00 0.00 0.00 4.52
1904 2199 5.106712 GCCACAATGAGTTCGATTTCTGTTA 60.107 40.000 0.00 0.00 0.00 2.41
2039 2334 6.810911 TGAGATAGCTGATAAACTCAAGGTC 58.189 40.000 0.00 0.00 32.07 3.85
2056 2351 6.819284 TCAAGGTCAATGCATTCTTCTTTTT 58.181 32.000 9.53 0.00 0.00 1.94
2098 2393 7.581213 TTATTGTGTCCTTTTGAACAGTGAT 57.419 32.000 0.00 0.00 0.00 3.06
2210 2506 7.283354 TGGACTTTTGTTACAACATATGTGTGA 59.717 33.333 9.63 4.19 43.77 3.58
2218 2514 7.446931 TGTTACAACATATGTGTGATGGAAGTT 59.553 33.333 9.63 0.00 43.77 2.66
2239 2535 1.689959 GTTCAACTTCAATGCTGGCG 58.310 50.000 0.00 0.00 0.00 5.69
2253 2549 1.920272 GCTGGCGACGAAAAAGTTCAC 60.920 52.381 0.00 0.00 32.89 3.18
2281 2577 8.234546 GCGGACAGTAGAATCTTCAATTTTAAA 58.765 33.333 0.00 0.00 0.00 1.52
2350 2646 0.110644 GGAGCTTGAACGTTGCTTCG 60.111 55.000 5.00 0.15 37.16 3.79
2375 2671 2.911484 AGCTAATCCCAAGAAGAAGCG 58.089 47.619 0.00 0.00 32.96 4.68
2396 2692 4.461405 CGAGCTTGATTGTGAAGAACTTG 58.539 43.478 0.00 0.00 0.00 3.16
2550 2846 3.006940 TGGACACCATTCGTAGAATTGC 58.993 45.455 0.00 0.00 45.90 3.56
2678 5981 4.860802 ATGGACACCATGGTTGAAGATA 57.139 40.909 16.84 0.00 43.39 1.98
2687 5990 8.210265 ACACCATGGTTGAAGATATTTTGTTTT 58.790 29.630 16.84 0.00 0.00 2.43
2714 6018 8.955061 ACTTTCTGTGAATTGATACAATTTCG 57.045 30.769 10.35 2.21 0.00 3.46
2787 6097 5.130705 AGGTTTCTTCTTTCTCCAAAGGT 57.869 39.130 0.00 0.00 39.75 3.50
2822 6132 9.489084 TTTGTGGATCCTTCTACATAATAATCG 57.511 33.333 14.23 0.00 42.18 3.34
2825 6135 6.212589 TGGATCCTTCTACATAATAATCGGCA 59.787 38.462 14.23 0.00 0.00 5.69
3048 6519 4.526970 AGTGTCCATGTTGAAGTTTGTCT 58.473 39.130 0.00 0.00 0.00 3.41
3079 6550 9.692749 CTTAACGGATATAAATCTGCTAGAACA 57.307 33.333 0.00 0.00 41.54 3.18
3086 6557 2.285827 ATCTGCTAGAACACGTGCTC 57.714 50.000 17.22 13.88 0.00 4.26
3098 6569 5.989777 AGAACACGTGCTCTATGTTAGTTTT 59.010 36.000 19.51 0.00 36.70 2.43
3147 6618 9.683069 ACAGTGATGAATGTATTTCTTTCAAAC 57.317 29.630 0.00 0.00 41.33 2.93
3203 6674 6.322969 TCCTCTGATGGATTTTGATGGAAATG 59.677 38.462 0.00 0.00 29.75 2.32
3243 6714 2.944129 TGACAGGAAAGAAACCCCTTG 58.056 47.619 0.00 0.00 0.00 3.61
3416 6960 9.190317 GGTAAATCTCCTTGTGGATATTTCTTT 57.810 33.333 10.35 0.00 42.06 2.52
3450 6994 1.067974 GGGCCAACAGGTGTGTAAAAC 59.932 52.381 4.39 0.00 35.08 2.43
3506 7050 2.412870 CACCAACTGAGCATAACACGA 58.587 47.619 0.00 0.00 0.00 4.35
3624 7190 6.371595 TTCATTGCCCTTTAATGGTCAATT 57.628 33.333 12.52 0.00 36.44 2.32
3678 7248 7.605691 GGATAAATACCTGTCTCATGATTGGAG 59.394 40.741 0.00 0.00 0.00 3.86
3681 7251 6.760440 ATACCTGTCTCATGATTGGAGAAT 57.240 37.500 0.00 0.00 42.63 2.40
3780 7351 6.139679 ACTTCATTTTCCCACCTTCTCATA 57.860 37.500 0.00 0.00 0.00 2.15
3868 7439 4.144297 TGGTGCTTCACTTTCTAGCATTT 58.856 39.130 0.00 0.00 45.61 2.32
3869 7440 4.022935 TGGTGCTTCACTTTCTAGCATTTG 60.023 41.667 0.00 0.00 45.61 2.32
3894 7465 9.529325 TGATTAGTAAAACGAACTATCTGATGG 57.471 33.333 0.00 0.00 29.86 3.51
3897 7468 4.946784 AAAACGAACTATCTGATGGTGC 57.053 40.909 7.46 4.72 0.00 5.01
3898 7469 3.610040 AACGAACTATCTGATGGTGCA 57.390 42.857 12.06 0.00 0.00 4.57
3905 7476 0.986527 ATCTGATGGTGCACAGGACA 59.013 50.000 20.43 7.64 35.20 4.02
3917 7488 1.544246 CACAGGACAGTCATACGACCA 59.456 52.381 2.17 0.00 43.73 4.02
3938 7509 5.481200 CATTGCATGGACTGAGAGTTAAG 57.519 43.478 0.00 0.00 0.00 1.85
3985 7556 6.983307 ACTGTACTTGAGAAGATACATCATGC 59.017 38.462 0.00 0.00 30.41 4.06
4016 7587 4.293494 AGATCTGTGGTGTGATAGTGGAT 58.707 43.478 0.00 0.00 0.00 3.41
4069 7640 8.397906 TCTTTCTAGCATTGATCCGTAAAATTG 58.602 33.333 0.00 0.00 0.00 2.32
4087 7814 9.124807 GTAAAATTGGGAGTTCTGTATTTTTCG 57.875 33.333 0.00 0.00 0.00 3.46
4090 7818 3.500680 TGGGAGTTCTGTATTTTTCGTGC 59.499 43.478 0.00 0.00 0.00 5.34
4095 7823 6.093633 GGAGTTCTGTATTTTTCGTGCCTTAT 59.906 38.462 0.00 0.00 0.00 1.73
4303 8032 2.247358 GAGGTGGAAATGGGAAAGCAA 58.753 47.619 0.00 0.00 0.00 3.91
4305 8034 1.338105 GGTGGAAATGGGAAAGCAAGC 60.338 52.381 0.00 0.00 0.00 4.01
4361 8091 6.281405 CCGAAAAACCAGTAGCTGATACTAT 58.719 40.000 5.13 0.00 43.13 2.12
4362 8092 7.431249 CCGAAAAACCAGTAGCTGATACTATA 58.569 38.462 5.13 0.00 43.13 1.31
4363 8093 8.088981 CCGAAAAACCAGTAGCTGATACTATAT 58.911 37.037 5.13 0.00 43.13 0.86
4398 8218 7.857569 TGACAACAAGTTACAACATAGCTAAC 58.142 34.615 0.00 0.00 0.00 2.34
4425 8245 8.207545 ACAGAGATCCCTACTATGAAAAACATC 58.792 37.037 0.00 0.00 40.07 3.06
4539 9376 4.875544 TTCTCGCCATGTTGCTAAATAC 57.124 40.909 0.00 0.00 0.00 1.89
4542 9379 3.202906 TCGCCATGTTGCTAAATACTCC 58.797 45.455 0.00 0.00 0.00 3.85
4546 9383 4.137543 CCATGTTGCTAAATACTCCCTCC 58.862 47.826 0.00 0.00 0.00 4.30
4547 9384 3.536956 TGTTGCTAAATACTCCCTCCG 57.463 47.619 0.00 0.00 0.00 4.63
4548 9385 2.835764 TGTTGCTAAATACTCCCTCCGT 59.164 45.455 0.00 0.00 0.00 4.69
4549 9386 3.118884 TGTTGCTAAATACTCCCTCCGTC 60.119 47.826 0.00 0.00 0.00 4.79
4551 9388 1.343789 GCTAAATACTCCCTCCGTCCC 59.656 57.143 0.00 0.00 0.00 4.46
4552 9389 2.674420 CTAAATACTCCCTCCGTCCCA 58.326 52.381 0.00 0.00 0.00 4.37
4553 9390 1.961133 AAATACTCCCTCCGTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
4554 9391 1.201424 AATACTCCCTCCGTCCCAAC 58.799 55.000 0.00 0.00 0.00 3.77
4555 9392 0.042131 ATACTCCCTCCGTCCCAACA 59.958 55.000 0.00 0.00 0.00 3.33
4557 9394 1.609501 CTCCCTCCGTCCCAACAGA 60.610 63.158 0.00 0.00 0.00 3.41
4558 9395 1.152204 TCCCTCCGTCCCAACAGAA 60.152 57.895 0.00 0.00 0.00 3.02
4559 9396 1.192146 TCCCTCCGTCCCAACAGAAG 61.192 60.000 0.00 0.00 0.00 2.85
4560 9397 1.481056 CCCTCCGTCCCAACAGAAGT 61.481 60.000 0.00 0.00 0.00 3.01
4561 9398 0.320771 CCTCCGTCCCAACAGAAGTG 60.321 60.000 0.00 0.00 0.00 3.16
4562 9399 0.393077 CTCCGTCCCAACAGAAGTGT 59.607 55.000 0.00 0.00 39.19 3.55
4563 9400 0.391597 TCCGTCCCAACAGAAGTGTC 59.608 55.000 0.00 0.00 35.08 3.67
4564 9401 0.393077 CCGTCCCAACAGAAGTGTCT 59.607 55.000 0.00 0.00 35.08 3.41
4565 9402 1.202651 CCGTCCCAACAGAAGTGTCTT 60.203 52.381 0.00 0.00 35.08 3.01
4566 9403 2.036733 CCGTCCCAACAGAAGTGTCTTA 59.963 50.000 0.00 0.00 35.08 2.10
4567 9404 3.493699 CCGTCCCAACAGAAGTGTCTTAA 60.494 47.826 0.00 0.00 35.08 1.85
4568 9405 4.124238 CGTCCCAACAGAAGTGTCTTAAA 58.876 43.478 0.00 0.00 35.08 1.52
4569 9406 4.025145 CGTCCCAACAGAAGTGTCTTAAAC 60.025 45.833 0.00 0.00 35.08 2.01
4570 9407 5.123936 GTCCCAACAGAAGTGTCTTAAACT 58.876 41.667 0.00 0.00 35.08 2.66
4571 9408 5.589050 GTCCCAACAGAAGTGTCTTAAACTT 59.411 40.000 0.00 0.00 40.54 2.66
4572 9409 6.764560 GTCCCAACAGAAGTGTCTTAAACTTA 59.235 38.462 0.00 0.00 37.98 2.24
4573 9410 6.990349 TCCCAACAGAAGTGTCTTAAACTTAG 59.010 38.462 0.00 0.00 37.98 2.18
4574 9411 6.766467 CCCAACAGAAGTGTCTTAAACTTAGT 59.234 38.462 0.00 0.00 37.98 2.24
4575 9412 7.929785 CCCAACAGAAGTGTCTTAAACTTAGTA 59.070 37.037 0.00 0.00 37.98 1.82
4576 9413 8.762426 CCAACAGAAGTGTCTTAAACTTAGTAC 58.238 37.037 0.00 0.00 37.98 2.73
4577 9414 9.309516 CAACAGAAGTGTCTTAAACTTAGTACA 57.690 33.333 0.00 0.00 37.98 2.90
4610 9447 7.723324 ACTAAAGCTAGTACAAAGTTGAGACA 58.277 34.615 0.00 0.00 36.56 3.41
4611 9448 6.846325 AAAGCTAGTACAAAGTTGAGACAC 57.154 37.500 0.00 0.00 0.00 3.67
4612 9449 5.793030 AGCTAGTACAAAGTTGAGACACT 57.207 39.130 0.00 0.00 0.00 3.55
4613 9450 6.163135 AGCTAGTACAAAGTTGAGACACTT 57.837 37.500 0.00 0.00 38.74 3.16
4614 9451 7.286215 AGCTAGTACAAAGTTGAGACACTTA 57.714 36.000 0.00 0.00 35.87 2.24
4615 9452 7.897864 AGCTAGTACAAAGTTGAGACACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
4616 9453 8.368668 AGCTAGTACAAAGTTGAGACACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
4617 9454 8.989980 GCTAGTACAAAGTTGAGACACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
4626 9463 9.832445 AAGTTGAGACACTTATTTTAAGACAGA 57.168 29.630 1.47 0.00 35.10 3.41
4627 9464 9.832445 AGTTGAGACACTTATTTTAAGACAGAA 57.168 29.630 1.47 0.00 0.00 3.02
4629 9466 8.833231 TGAGACACTTATTTTAAGACAGAAGG 57.167 34.615 1.47 0.00 0.00 3.46
4630 9467 8.647796 TGAGACACTTATTTTAAGACAGAAGGA 58.352 33.333 1.47 0.00 0.00 3.36
4631 9468 9.145865 GAGACACTTATTTTAAGACAGAAGGAG 57.854 37.037 1.47 0.00 0.00 3.69
4758 9598 0.179001 TCAGTCACTCAGGTGGTCGA 60.179 55.000 0.00 0.00 43.17 4.20
4829 9669 3.107601 ACTCTCCCTAGCAGCACATAAA 58.892 45.455 0.00 0.00 0.00 1.40
4831 9671 2.159099 TCTCCCTAGCAGCACATAAACG 60.159 50.000 0.00 0.00 0.00 3.60
4833 9673 1.368641 CCTAGCAGCACATAAACGCA 58.631 50.000 0.00 0.00 0.00 5.24
4889 9729 3.244526 CCTTGCCCCTTTATTGCTTTGTT 60.245 43.478 0.00 0.00 0.00 2.83
4924 9764 2.037641 TCGATCTGCCCCTCATGTTATG 59.962 50.000 0.00 0.00 0.00 1.90
4963 9803 3.233355 CCAAACTTGGGAGTCTCCG 57.767 57.895 12.91 1.81 44.70 4.63
4964 9804 0.396811 CCAAACTTGGGAGTCTCCGT 59.603 55.000 12.91 2.47 44.70 4.69
4965 9805 1.621814 CCAAACTTGGGAGTCTCCGTA 59.378 52.381 12.91 1.58 44.70 4.02
4966 9806 2.038033 CCAAACTTGGGAGTCTCCGTAA 59.962 50.000 12.91 9.48 44.70 3.18
4967 9807 3.326747 CAAACTTGGGAGTCTCCGTAAG 58.673 50.000 23.13 23.13 37.43 2.34
4968 9808 2.305858 ACTTGGGAGTCTCCGTAAGT 57.694 50.000 24.07 24.07 38.76 2.24
4969 9809 2.606378 ACTTGGGAGTCTCCGTAAGTT 58.394 47.619 24.07 14.19 39.80 2.66
4970 9810 2.561858 ACTTGGGAGTCTCCGTAAGTTC 59.438 50.000 24.07 7.84 39.80 3.01
4971 9811 2.599408 TGGGAGTCTCCGTAAGTTCT 57.401 50.000 12.91 0.00 37.43 3.01
4972 9812 2.444421 TGGGAGTCTCCGTAAGTTCTC 58.556 52.381 12.91 0.00 37.43 2.87
4973 9813 2.224942 TGGGAGTCTCCGTAAGTTCTCA 60.225 50.000 12.91 0.00 37.43 3.27
4974 9814 2.164017 GGGAGTCTCCGTAAGTTCTCAC 59.836 54.545 12.91 0.00 37.43 3.51
4975 9815 3.083293 GGAGTCTCCGTAAGTTCTCACT 58.917 50.000 2.28 0.00 32.71 3.41
4976 9816 3.119779 GGAGTCTCCGTAAGTTCTCACTG 60.120 52.174 2.28 0.00 31.60 3.66
4977 9817 2.229302 AGTCTCCGTAAGTTCTCACTGC 59.771 50.000 0.00 0.00 31.60 4.40
4978 9818 1.199327 TCTCCGTAAGTTCTCACTGCG 59.801 52.381 0.00 0.00 31.60 5.18
4979 9819 0.242825 TCCGTAAGTTCTCACTGCGG 59.757 55.000 10.60 10.60 46.11 5.69
4980 9820 0.242825 CCGTAAGTTCTCACTGCGGA 59.757 55.000 0.00 0.00 46.97 5.54
4981 9821 1.135083 CCGTAAGTTCTCACTGCGGAT 60.135 52.381 0.00 0.00 46.97 4.18
4982 9822 2.607187 CGTAAGTTCTCACTGCGGATT 58.393 47.619 0.00 0.00 31.60 3.01
4983 9823 2.599082 CGTAAGTTCTCACTGCGGATTC 59.401 50.000 0.00 0.00 31.60 2.52
5201 10042 3.532155 GGATGCTCCTCGGCGACT 61.532 66.667 4.99 0.00 32.53 4.18
5202 10043 2.194212 GGATGCTCCTCGGCGACTA 61.194 63.158 4.99 0.00 32.53 2.59
5736 10591 3.414700 GGTGGCTCGCGTTCTGTG 61.415 66.667 5.77 0.00 0.00 3.66
5738 10593 3.923864 TGGCTCGCGTTCTGTGGT 61.924 61.111 5.77 0.00 0.00 4.16
5969 10825 3.647649 CTGCTCGATCGTGGTGGCA 62.648 63.158 15.94 16.04 0.00 4.92
6000 10856 4.622456 GGTGTGTTTGGTGGCGCG 62.622 66.667 0.00 0.00 0.00 6.86
6180 11037 1.224592 GGAGATGTCCGGGCAACAT 59.775 57.895 15.45 10.41 39.99 2.71
6292 11149 2.668632 GGTTGCGGGTCCTCATCA 59.331 61.111 0.00 0.00 0.00 3.07
6300 11157 1.933853 CGGGTCCTCATCATTTTCGTC 59.066 52.381 0.00 0.00 0.00 4.20
6336 11193 7.147312 TGTTGGCATTATTTTCTCTTCAGTTG 58.853 34.615 0.00 0.00 0.00 3.16
6379 11237 3.177884 TTGTGCTGAGGCCCCAGT 61.178 61.111 16.53 0.00 36.57 4.00
6441 11299 1.958579 GGCAACCCTTTTTCGGTAACT 59.041 47.619 0.00 0.00 31.69 2.24
6442 11300 2.363038 GGCAACCCTTTTTCGGTAACTT 59.637 45.455 0.00 0.00 31.69 2.66
6443 11301 3.569277 GGCAACCCTTTTTCGGTAACTTA 59.431 43.478 0.00 0.00 31.69 2.24
6444 11302 4.320714 GGCAACCCTTTTTCGGTAACTTAG 60.321 45.833 0.00 0.00 31.69 2.18
6445 11303 4.320714 GCAACCCTTTTTCGGTAACTTAGG 60.321 45.833 0.00 0.00 31.69 2.69
6446 11304 4.980339 ACCCTTTTTCGGTAACTTAGGA 57.020 40.909 0.00 0.00 0.00 2.94
6447 11305 4.903054 ACCCTTTTTCGGTAACTTAGGAG 58.097 43.478 0.00 0.00 0.00 3.69
6448 11306 4.349048 ACCCTTTTTCGGTAACTTAGGAGT 59.651 41.667 0.00 0.00 37.87 3.85
6449 11307 4.934001 CCCTTTTTCGGTAACTTAGGAGTC 59.066 45.833 0.00 0.00 34.21 3.36
6490 11348 0.249826 GGGATGCTGCTGCTCTAGAC 60.250 60.000 17.00 1.62 40.48 2.59
6533 11391 3.518998 CGGAGCATCGGTCGTCCT 61.519 66.667 0.00 0.00 34.37 3.85
6542 11400 0.526211 TCGGTCGTCCTCTGAACATG 59.474 55.000 0.00 0.00 0.00 3.21
6586 11444 0.252239 AAAGGGGAAAGGGATGGCAC 60.252 55.000 0.00 0.00 0.00 5.01
6587 11445 2.440247 GGGGAAAGGGATGGCACG 60.440 66.667 0.00 0.00 0.00 5.34
6610 11500 4.218635 GGGACTTTTCCTCCAACTCAAATC 59.781 45.833 0.00 0.00 42.38 2.17
6738 11632 2.227865 ACTGGTAATTTGCGCGATGTTT 59.772 40.909 12.10 0.00 0.00 2.83
6830 11724 1.988107 AGAGAGACAGAAATTGGGCCA 59.012 47.619 0.00 0.00 0.00 5.36
6988 12290 1.527311 GACGTGAAAACACAGAGAGGC 59.473 52.381 0.00 0.00 0.00 4.70
6996 12298 0.957395 ACACAGAGAGGCCGCAAATG 60.957 55.000 9.88 6.65 0.00 2.32
7177 12479 4.137543 GCCGTATTGAGAATGGAATCCTT 58.862 43.478 0.00 0.00 0.00 3.36
7309 12616 9.070179 GGTTGGTTGGAGACTACTTAATTTAAA 57.930 33.333 0.00 0.00 36.27 1.52
7690 15493 2.478831 GATCTCCAAGATCCGCAACTC 58.521 52.381 5.78 0.00 44.08 3.01
7691 15494 1.561643 TCTCCAAGATCCGCAACTCT 58.438 50.000 0.00 0.00 0.00 3.24
7692 15495 1.205655 TCTCCAAGATCCGCAACTCTG 59.794 52.381 0.00 0.00 0.00 3.35
7693 15496 0.391661 TCCAAGATCCGCAACTCTGC 60.392 55.000 0.00 0.00 45.75 4.26
7811 15625 1.538047 TACCTGCGTCTCGGTACTTT 58.462 50.000 0.00 0.00 34.76 2.66
7879 15693 0.521291 CGGTTGACATTGCCGTGAAT 59.479 50.000 5.72 0.00 40.53 2.57
8037 15851 5.303078 GCATCTAGACCTTGAGGATACAAGA 59.697 44.000 3.59 0.36 46.85 3.02
8042 15856 8.478877 TCTAGACCTTGAGGATACAAGAAATTC 58.521 37.037 3.59 0.00 46.85 2.17
8091 15944 3.615496 CGTCAGGGTTTATTCGTACTTGG 59.385 47.826 0.00 0.00 0.00 3.61
8116 15969 8.270744 GGCCTCTGACCATATCTATCATTAAAT 58.729 37.037 0.00 0.00 0.00 1.40
8144 15997 9.825972 CATGATACTCAGTGTTTTCGTTTTATT 57.174 29.630 0.00 0.00 0.00 1.40
8153 16006 4.735822 TGTTTTCGTTTTATTTGTCTGCGG 59.264 37.500 0.00 0.00 0.00 5.69
8162 16015 2.324014 TTTGTCTGCGGTGCCTGAGT 62.324 55.000 0.00 0.00 0.00 3.41
8179 16032 2.158914 TGAGTGCAGAAGCTCTTTGTCA 60.159 45.455 3.97 0.00 44.03 3.58
8180 16033 2.479656 GAGTGCAGAAGCTCTTTGTCAG 59.520 50.000 0.00 0.00 44.03 3.51
8181 16034 2.158842 AGTGCAGAAGCTCTTTGTCAGT 60.159 45.455 0.00 0.00 41.49 3.41
8182 16035 2.032204 GTGCAGAAGCTCTTTGTCAGTG 60.032 50.000 0.00 0.00 42.74 3.66
8183 16036 2.216898 GCAGAAGCTCTTTGTCAGTGT 58.783 47.619 0.00 0.00 37.91 3.55
8184 16037 2.615912 GCAGAAGCTCTTTGTCAGTGTT 59.384 45.455 0.00 0.00 37.91 3.32
8185 16038 3.303659 GCAGAAGCTCTTTGTCAGTGTTC 60.304 47.826 0.00 0.00 37.91 3.18
8186 16039 4.125703 CAGAAGCTCTTTGTCAGTGTTCT 58.874 43.478 0.00 0.00 0.00 3.01
8187 16040 5.292765 CAGAAGCTCTTTGTCAGTGTTCTA 58.707 41.667 0.00 0.00 0.00 2.10
8188 16041 5.755375 CAGAAGCTCTTTGTCAGTGTTCTAA 59.245 40.000 0.00 0.00 0.00 2.10
8189 16042 5.988561 AGAAGCTCTTTGTCAGTGTTCTAAG 59.011 40.000 0.00 0.00 0.00 2.18
8190 16043 5.537300 AGCTCTTTGTCAGTGTTCTAAGA 57.463 39.130 11.44 11.44 0.00 2.10
8191 16044 6.107901 AGCTCTTTGTCAGTGTTCTAAGAT 57.892 37.500 11.99 1.83 0.00 2.40
8192 16045 6.529220 AGCTCTTTGTCAGTGTTCTAAGATT 58.471 36.000 11.99 5.40 0.00 2.40
8193 16046 6.426328 AGCTCTTTGTCAGTGTTCTAAGATTG 59.574 38.462 11.99 6.42 0.00 2.67
8194 16047 6.545504 TCTTTGTCAGTGTTCTAAGATTGC 57.454 37.500 9.30 0.00 0.00 3.56
8195 16048 6.291377 TCTTTGTCAGTGTTCTAAGATTGCT 58.709 36.000 9.30 0.00 0.00 3.91
8196 16049 6.767902 TCTTTGTCAGTGTTCTAAGATTGCTT 59.232 34.615 9.30 0.00 38.15 3.91
8197 16050 5.929697 TGTCAGTGTTCTAAGATTGCTTG 57.070 39.130 0.00 0.00 35.56 4.01
8198 16051 4.214119 TGTCAGTGTTCTAAGATTGCTTGC 59.786 41.667 0.00 0.00 35.56 4.01
8199 16052 4.453819 GTCAGTGTTCTAAGATTGCTTGCT 59.546 41.667 0.00 0.00 35.56 3.91
8200 16053 4.453478 TCAGTGTTCTAAGATTGCTTGCTG 59.547 41.667 0.00 0.00 35.56 4.41
8201 16054 3.190118 AGTGTTCTAAGATTGCTTGCTGC 59.810 43.478 0.00 0.00 43.25 5.25
8202 16055 3.190118 GTGTTCTAAGATTGCTTGCTGCT 59.810 43.478 0.00 0.00 43.37 4.24
8203 16056 3.438087 TGTTCTAAGATTGCTTGCTGCTC 59.562 43.478 0.00 0.00 43.37 4.26
8204 16057 2.636830 TCTAAGATTGCTTGCTGCTCC 58.363 47.619 0.00 0.00 43.37 4.70
8205 16058 1.674962 CTAAGATTGCTTGCTGCTCCC 59.325 52.381 0.00 0.00 43.37 4.30
8206 16059 0.039326 AAGATTGCTTGCTGCTCCCT 59.961 50.000 0.00 0.00 43.37 4.20
8207 16060 0.394080 AGATTGCTTGCTGCTCCCTC 60.394 55.000 0.00 0.00 43.37 4.30
8208 16061 1.379576 ATTGCTTGCTGCTCCCTCC 60.380 57.895 0.00 0.00 43.37 4.30
8209 16062 3.907260 TTGCTTGCTGCTCCCTCCG 62.907 63.158 0.00 0.00 43.37 4.63
8210 16063 4.400961 GCTTGCTGCTCCCTCCGT 62.401 66.667 0.00 0.00 38.95 4.69
8211 16064 2.125350 CTTGCTGCTCCCTCCGTC 60.125 66.667 0.00 0.00 0.00 4.79
8212 16065 3.672295 CTTGCTGCTCCCTCCGTCC 62.672 68.421 0.00 0.00 0.00 4.79
8213 16066 4.704103 TGCTGCTCCCTCCGTCCT 62.704 66.667 0.00 0.00 0.00 3.85
8214 16067 4.154347 GCTGCTCCCTCCGTCCTG 62.154 72.222 0.00 0.00 0.00 3.86
8215 16068 2.681778 CTGCTCCCTCCGTCCTGT 60.682 66.667 0.00 0.00 0.00 4.00
8216 16069 1.379977 CTGCTCCCTCCGTCCTGTA 60.380 63.158 0.00 0.00 0.00 2.74
8217 16070 0.970937 CTGCTCCCTCCGTCCTGTAA 60.971 60.000 0.00 0.00 0.00 2.41
8218 16071 0.325296 TGCTCCCTCCGTCCTGTAAT 60.325 55.000 0.00 0.00 0.00 1.89
8219 16072 1.063492 TGCTCCCTCCGTCCTGTAATA 60.063 52.381 0.00 0.00 0.00 0.98
8220 16073 2.249139 GCTCCCTCCGTCCTGTAATAT 58.751 52.381 0.00 0.00 0.00 1.28
8221 16074 3.181426 TGCTCCCTCCGTCCTGTAATATA 60.181 47.826 0.00 0.00 0.00 0.86
8222 16075 3.193056 GCTCCCTCCGTCCTGTAATATAC 59.807 52.174 0.00 0.00 0.00 1.47
8223 16076 4.404640 CTCCCTCCGTCCTGTAATATACA 58.595 47.826 0.00 0.00 37.13 2.29
8224 16077 4.806892 TCCCTCCGTCCTGTAATATACAA 58.193 43.478 0.00 0.00 38.38 2.41
8225 16078 5.399991 TCCCTCCGTCCTGTAATATACAAT 58.600 41.667 0.00 0.00 38.38 2.71
8226 16079 6.554784 TCCCTCCGTCCTGTAATATACAATA 58.445 40.000 0.00 0.00 38.38 1.90
8227 16080 7.186972 TCCCTCCGTCCTGTAATATACAATAT 58.813 38.462 0.00 0.00 38.38 1.28
8228 16081 7.676893 TCCCTCCGTCCTGTAATATACAATATT 59.323 37.037 0.00 0.00 38.38 1.28
8229 16082 8.319146 CCCTCCGTCCTGTAATATACAATATTT 58.681 37.037 0.00 0.00 38.38 1.40
8230 16083 9.720769 CCTCCGTCCTGTAATATACAATATTTT 57.279 33.333 0.00 0.00 38.38 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.745125 CACTATAATGTCGCCATCGTTTCT 59.255 41.667 0.00 0.00 36.96 2.52
46 47 1.338107 AAAGGTTGTAAAGGGGCAGC 58.662 50.000 0.00 0.00 0.00 5.25
56 57 4.794334 TCCTGCCTAACAAAAAGGTTGTA 58.206 39.130 0.00 0.00 36.43 2.41
97 98 3.719268 TGATGTGGTAGCTGATTGGTT 57.281 42.857 0.00 0.00 0.00 3.67
107 108 5.541845 TCACTGAGTTTCTTGATGTGGTAG 58.458 41.667 0.00 0.00 0.00 3.18
108 109 5.545063 TCACTGAGTTTCTTGATGTGGTA 57.455 39.130 0.00 0.00 0.00 3.25
109 110 4.422073 TCACTGAGTTTCTTGATGTGGT 57.578 40.909 0.00 0.00 0.00 4.16
110 111 5.756195 TTTCACTGAGTTTCTTGATGTGG 57.244 39.130 0.00 0.00 0.00 4.17
126 127 9.764363 TCTGCGAGTTATCAATATTATTTCACT 57.236 29.630 0.00 0.00 0.00 3.41
148 149 1.876156 CCTGGCCGATTAATTCTCTGC 59.124 52.381 0.00 0.00 0.00 4.26
149 150 1.876156 GCCTGGCCGATTAATTCTCTG 59.124 52.381 7.66 0.00 0.00 3.35
152 153 1.490490 TCAGCCTGGCCGATTAATTCT 59.510 47.619 16.57 0.00 0.00 2.40
153 154 1.604278 GTCAGCCTGGCCGATTAATTC 59.396 52.381 16.57 0.00 0.00 2.17
154 155 1.680338 GTCAGCCTGGCCGATTAATT 58.320 50.000 16.57 0.00 0.00 1.40
155 156 0.179018 GGTCAGCCTGGCCGATTAAT 60.179 55.000 16.57 0.00 29.54 1.40
163 164 1.968540 GTGTGAAGGTCAGCCTGGC 60.969 63.158 11.65 11.65 46.33 4.85
165 166 0.604780 CCAGTGTGAAGGTCAGCCTG 60.605 60.000 0.00 0.00 46.33 4.85
168 169 1.876156 CTTTCCAGTGTGAAGGTCAGC 59.124 52.381 0.00 0.00 0.00 4.26
169 170 3.199880 ACTTTCCAGTGTGAAGGTCAG 57.800 47.619 7.41 0.71 29.55 3.51
225 256 1.098869 TCATGACCTCTGCGACTCTC 58.901 55.000 0.00 0.00 0.00 3.20
231 262 0.249784 CCTGGATCATGACCTCTGCG 60.250 60.000 0.00 0.00 0.00 5.18
341 372 1.712977 GCCTCTCGCCTGAGCAATTG 61.713 60.000 0.00 0.00 42.26 2.32
392 423 0.818040 ACCTTCACGGCTTCACCAAC 60.818 55.000 0.00 0.00 39.03 3.77
405 436 0.599558 CTCCGTCGGTAACACCTTCA 59.400 55.000 11.88 0.00 35.66 3.02
480 511 1.521681 GATTTCACGGAGGAGGGCG 60.522 63.158 0.00 0.00 0.00 6.13
502 533 1.954362 ATGCCAGAGACAGCTCCGAC 61.954 60.000 0.00 0.00 42.30 4.79
514 545 3.941081 GGAGACTCCGATGCCAGA 58.059 61.111 5.55 0.00 0.00 3.86
535 566 4.437587 TCCCCCTCGTCGTCCTCC 62.438 72.222 0.00 0.00 0.00 4.30
536 567 3.139469 GTCCCCCTCGTCGTCCTC 61.139 72.222 0.00 0.00 0.00 3.71
537 568 3.641925 GAGTCCCCCTCGTCGTCCT 62.642 68.421 0.00 0.00 0.00 3.85
550 581 3.519930 GACGAGGAGCCGGAGTCC 61.520 72.222 5.05 10.93 0.00 3.85
605 648 5.486735 TTTTCTGTTTATCCCGTGACCTA 57.513 39.130 0.00 0.00 0.00 3.08
627 670 4.886579 CTTGCCTCAAGCTTACCATTTTT 58.113 39.130 0.00 0.00 44.23 1.94
678 737 1.356938 GAAGGCGCAGGTAGTACAAC 58.643 55.000 10.83 0.00 0.00 3.32
693 755 2.359975 GCCACCCAAGGACGAAGG 60.360 66.667 0.00 0.00 0.00 3.46
763 831 2.802719 CTAGGAGGACTAGGATGGAGC 58.197 57.143 0.00 0.00 44.50 4.70
791 859 1.878522 CGATTGCTCCGAGTTCCCG 60.879 63.158 0.00 0.00 0.00 5.14
792 860 1.521681 CCGATTGCTCCGAGTTCCC 60.522 63.158 0.00 0.00 0.00 3.97
795 863 1.153823 CGTCCGATTGCTCCGAGTT 60.154 57.895 0.00 0.00 0.00 3.01
796 864 1.994507 CTCGTCCGATTGCTCCGAGT 61.995 60.000 0.00 0.00 39.96 4.18
797 865 1.298713 CTCGTCCGATTGCTCCGAG 60.299 63.158 0.00 0.00 39.02 4.63
799 867 0.457853 TTTCTCGTCCGATTGCTCCG 60.458 55.000 0.00 0.00 0.00 4.63
800 868 1.135083 TCTTTCTCGTCCGATTGCTCC 60.135 52.381 0.00 0.00 0.00 4.70
801 869 1.921230 GTCTTTCTCGTCCGATTGCTC 59.079 52.381 0.00 0.00 0.00 4.26
802 870 1.404315 GGTCTTTCTCGTCCGATTGCT 60.404 52.381 0.00 0.00 0.00 3.91
803 871 1.000145 GGTCTTTCTCGTCCGATTGC 59.000 55.000 0.00 0.00 0.00 3.56
804 872 1.641577 GGGTCTTTCTCGTCCGATTG 58.358 55.000 0.00 0.00 0.00 2.67
805 873 0.535797 GGGGTCTTTCTCGTCCGATT 59.464 55.000 0.00 0.00 0.00 3.34
806 874 0.613853 TGGGGTCTTTCTCGTCCGAT 60.614 55.000 0.00 0.00 0.00 4.18
807 875 0.828762 TTGGGGTCTTTCTCGTCCGA 60.829 55.000 0.00 0.00 0.00 4.55
808 876 0.389948 CTTGGGGTCTTTCTCGTCCG 60.390 60.000 0.00 0.00 0.00 4.79
809 877 0.673956 GCTTGGGGTCTTTCTCGTCC 60.674 60.000 0.00 0.00 0.00 4.79
810 878 0.321996 AGCTTGGGGTCTTTCTCGTC 59.678 55.000 0.00 0.00 0.00 4.20
811 879 0.035458 CAGCTTGGGGTCTTTCTCGT 59.965 55.000 0.00 0.00 0.00 4.18
812 880 0.321671 TCAGCTTGGGGTCTTTCTCG 59.678 55.000 0.00 0.00 0.00 4.04
813 881 1.339535 CCTCAGCTTGGGGTCTTTCTC 60.340 57.143 0.00 0.00 31.83 2.87
814 882 0.695347 CCTCAGCTTGGGGTCTTTCT 59.305 55.000 0.00 0.00 31.83 2.52
815 883 0.962855 GCCTCAGCTTGGGGTCTTTC 60.963 60.000 4.84 0.00 41.16 2.62
816 884 1.075659 GCCTCAGCTTGGGGTCTTT 59.924 57.895 4.84 0.00 41.16 2.52
817 885 2.759795 GCCTCAGCTTGGGGTCTT 59.240 61.111 4.84 0.00 41.16 3.01
818 886 3.334054 GGCCTCAGCTTGGGGTCT 61.334 66.667 0.00 0.00 40.21 3.85
819 887 4.785453 CGGCCTCAGCTTGGGGTC 62.785 72.222 0.00 1.08 41.16 4.46
821 889 4.033776 TTCGGCCTCAGCTTGGGG 62.034 66.667 0.00 1.59 42.32 4.96
822 890 2.747855 GTTCGGCCTCAGCTTGGG 60.748 66.667 0.00 1.38 39.73 4.12
823 891 2.032528 TGTTCGGCCTCAGCTTGG 59.967 61.111 0.00 0.00 39.73 3.61
824 892 0.603707 TTCTGTTCGGCCTCAGCTTG 60.604 55.000 0.00 0.00 39.73 4.01
825 893 0.603975 GTTCTGTTCGGCCTCAGCTT 60.604 55.000 0.00 0.00 39.73 3.74
829 897 0.396435 ATGTGTTCTGTTCGGCCTCA 59.604 50.000 0.00 0.00 0.00 3.86
835 903 0.708370 CGGTCGATGTGTTCTGTTCG 59.292 55.000 0.00 0.00 0.00 3.95
904 972 5.033507 CGAAATGATCACACACACACAAAA 58.966 37.500 0.00 0.00 0.00 2.44
906 974 3.625313 ACGAAATGATCACACACACACAA 59.375 39.130 0.00 0.00 0.00 3.33
907 975 3.002144 CACGAAATGATCACACACACACA 59.998 43.478 0.00 0.00 0.00 3.72
908 976 3.544651 CACGAAATGATCACACACACAC 58.455 45.455 0.00 0.00 0.00 3.82
909 977 2.547634 CCACGAAATGATCACACACACA 59.452 45.455 0.00 0.00 0.00 3.72
910 978 2.665519 GCCACGAAATGATCACACACAC 60.666 50.000 0.00 0.00 0.00 3.82
911 979 1.535028 GCCACGAAATGATCACACACA 59.465 47.619 0.00 0.00 0.00 3.72
913 981 1.164411 GGCCACGAAATGATCACACA 58.836 50.000 0.00 0.00 0.00 3.72
914 982 0.451783 GGGCCACGAAATGATCACAC 59.548 55.000 4.39 0.00 0.00 3.82
916 984 1.401905 GAAGGGCCACGAAATGATCAC 59.598 52.381 6.18 0.00 0.00 3.06
919 987 1.408822 GGAGAAGGGCCACGAAATGAT 60.409 52.381 6.18 0.00 0.00 2.45
922 1003 1.303282 GGGAGAAGGGCCACGAAAT 59.697 57.895 6.18 0.00 0.00 2.17
938 1019 0.820891 CGGAGATGCAGATTTGGGGG 60.821 60.000 0.00 0.00 0.00 5.40
940 1021 0.820891 CCCGGAGATGCAGATTTGGG 60.821 60.000 0.73 0.00 0.00 4.12
969 1052 5.989477 TGAGATTAGGGTTTGATCGTGAAT 58.011 37.500 0.00 0.00 0.00 2.57
970 1053 5.414789 TGAGATTAGGGTTTGATCGTGAA 57.585 39.130 0.00 0.00 0.00 3.18
971 1054 5.414789 TTGAGATTAGGGTTTGATCGTGA 57.585 39.130 0.00 0.00 0.00 4.35
972 1055 6.540189 AGATTTGAGATTAGGGTTTGATCGTG 59.460 38.462 0.00 0.00 0.00 4.35
973 1056 6.653989 AGATTTGAGATTAGGGTTTGATCGT 58.346 36.000 0.00 0.00 0.00 3.73
974 1057 6.074088 CGAGATTTGAGATTAGGGTTTGATCG 60.074 42.308 0.00 0.00 0.00 3.69
975 1058 6.986817 TCGAGATTTGAGATTAGGGTTTGATC 59.013 38.462 0.00 0.00 0.00 2.92
976 1059 6.889198 TCGAGATTTGAGATTAGGGTTTGAT 58.111 36.000 0.00 0.00 0.00 2.57
990 1073 3.825143 TCAGCATCCATCGAGATTTGA 57.175 42.857 0.00 0.00 0.00 2.69
994 1077 1.071385 GGGTTCAGCATCCATCGAGAT 59.929 52.381 0.00 0.00 0.00 2.75
1008 1091 1.451927 GGATGCATGCTCGGGTTCA 60.452 57.895 20.33 0.00 0.00 3.18
1044 1127 1.873591 CCACTTACCACTTGAGTGTGC 59.126 52.381 10.03 0.00 44.21 4.57
1050 1139 2.372837 GGGGTTACCACTTACCACTTGA 59.627 50.000 2.98 0.00 39.85 3.02
1051 1140 2.374170 AGGGGTTACCACTTACCACTTG 59.626 50.000 0.00 0.00 45.90 3.16
1061 1150 3.892588 CAGAGATAGAGAGGGGTTACCAC 59.107 52.174 2.98 0.00 43.89 4.16
1062 1151 3.691603 GCAGAGATAGAGAGGGGTTACCA 60.692 52.174 2.98 0.00 43.89 3.25
1063 1152 2.894765 GCAGAGATAGAGAGGGGTTACC 59.105 54.545 0.00 0.00 40.67 2.85
1064 1153 2.894765 GGCAGAGATAGAGAGGGGTTAC 59.105 54.545 0.00 0.00 0.00 2.50
1065 1154 2.158295 GGGCAGAGATAGAGAGGGGTTA 60.158 54.545 0.00 0.00 0.00 2.85
1077 1166 0.398381 GAGAGGGTCTGGGCAGAGAT 60.398 60.000 0.00 0.00 38.27 2.75
1079 1168 2.063378 GGAGAGGGTCTGGGCAGAG 61.063 68.421 0.00 0.00 38.27 3.35
1080 1169 2.039624 GGAGAGGGTCTGGGCAGA 59.960 66.667 0.00 0.00 34.56 4.26
1083 1172 1.575447 ATTTGGGAGAGGGTCTGGGC 61.575 60.000 0.00 0.00 0.00 5.36
1084 1173 0.257039 CATTTGGGAGAGGGTCTGGG 59.743 60.000 0.00 0.00 0.00 4.45
1085 1174 1.289160 TCATTTGGGAGAGGGTCTGG 58.711 55.000 0.00 0.00 0.00 3.86
1087 1176 2.507471 GTGATCATTTGGGAGAGGGTCT 59.493 50.000 0.00 0.00 0.00 3.85
1088 1177 2.422093 GGTGATCATTTGGGAGAGGGTC 60.422 54.545 0.00 0.00 0.00 4.46
1115 1225 7.241042 AGTTACTGCACAACTCCTCTTTATA 57.759 36.000 3.59 0.00 30.36 0.98
1117 1227 5.539048 GAGTTACTGCACAACTCCTCTTTA 58.461 41.667 19.28 0.00 43.98 1.85
1119 1229 3.996480 GAGTTACTGCACAACTCCTCTT 58.004 45.455 19.28 0.00 43.98 2.85
1141 1256 7.013559 CCTGTGATCAAATCATTAATGGCTGTA 59.986 37.037 15.36 0.00 42.04 2.74
1144 1259 5.221382 GCCTGTGATCAAATCATTAATGGCT 60.221 40.000 15.36 0.90 42.04 4.75
1147 1262 6.581166 CGATGCCTGTGATCAAATCATTAATG 59.419 38.462 9.29 9.29 42.04 1.90
1151 1266 4.036027 GTCGATGCCTGTGATCAAATCATT 59.964 41.667 0.00 0.00 42.04 2.57
1152 1267 3.562973 GTCGATGCCTGTGATCAAATCAT 59.437 43.478 0.00 0.00 42.04 2.45
1153 1268 2.938451 GTCGATGCCTGTGATCAAATCA 59.062 45.455 0.00 0.00 36.84 2.57
1155 1270 2.292267 GGTCGATGCCTGTGATCAAAT 58.708 47.619 0.00 0.00 0.00 2.32
1156 1271 1.003003 TGGTCGATGCCTGTGATCAAA 59.997 47.619 0.00 0.00 0.00 2.69
1157 1272 0.612744 TGGTCGATGCCTGTGATCAA 59.387 50.000 0.00 0.00 0.00 2.57
1158 1273 0.108186 GTGGTCGATGCCTGTGATCA 60.108 55.000 0.00 0.00 0.00 2.92
1159 1274 0.811616 GGTGGTCGATGCCTGTGATC 60.812 60.000 0.00 0.00 0.00 2.92
1160 1275 1.221840 GGTGGTCGATGCCTGTGAT 59.778 57.895 0.00 0.00 0.00 3.06
1161 1276 2.662596 GGTGGTCGATGCCTGTGA 59.337 61.111 0.00 0.00 0.00 3.58
1222 1337 1.406205 CCCTCCGCTCTTCTTTCTTCC 60.406 57.143 0.00 0.00 0.00 3.46
1233 1348 3.591835 CTCTCTCGCCCTCCGCTC 61.592 72.222 0.00 0.00 36.73 5.03
1253 1368 0.858583 GGCGTTTGTTTTGGATGTGC 59.141 50.000 0.00 0.00 0.00 4.57
1293 1408 7.509546 TCCTTTATCTTACATTGCCTCCTTAG 58.490 38.462 0.00 0.00 0.00 2.18
1300 1415 4.464947 AGCCTCCTTTATCTTACATTGCC 58.535 43.478 0.00 0.00 0.00 4.52
1305 1420 6.213600 ACTTCTTGAGCCTCCTTTATCTTACA 59.786 38.462 0.00 0.00 0.00 2.41
1310 1425 5.123027 CACAACTTCTTGAGCCTCCTTTATC 59.877 44.000 0.00 0.00 0.00 1.75
1312 1427 4.389374 CACAACTTCTTGAGCCTCCTTTA 58.611 43.478 0.00 0.00 0.00 1.85
1314 1429 2.487986 CCACAACTTCTTGAGCCTCCTT 60.488 50.000 0.00 0.00 0.00 3.36
1319 1434 1.876156 CTGTCCACAACTTCTTGAGCC 59.124 52.381 0.00 0.00 0.00 4.70
1343 1458 4.162698 AGCATCTCTTCTCTCAGCTTGAAT 59.837 41.667 0.00 0.00 0.00 2.57
1344 1459 3.514706 AGCATCTCTTCTCTCAGCTTGAA 59.485 43.478 0.00 0.00 0.00 2.69
1384 1499 3.518998 CCTCCGTCGACGCCTCAT 61.519 66.667 31.73 0.00 38.18 2.90
1395 1510 2.685380 CTCCTCCTTGCCCTCCGT 60.685 66.667 0.00 0.00 0.00 4.69
1421 1536 1.384643 GGGAGGGGAGCTGTGGTAT 60.385 63.158 0.00 0.00 0.00 2.73
1426 1541 3.615811 TCCAGGGAGGGGAGCTGT 61.616 66.667 0.00 0.00 38.24 4.40
1431 1546 4.421554 CCAGCTCCAGGGAGGGGA 62.422 72.222 16.70 0.00 42.25 4.81
1481 1596 3.618351 AGAATCAATGCAAGAGGGTGAG 58.382 45.455 0.00 0.00 0.00 3.51
1575 1694 3.330701 AGGAGAAGCAAATAACCTGGTGA 59.669 43.478 0.00 0.00 0.00 4.02
1615 1734 8.840321 CCAAACTTGTTCCTTCATATAGGTATG 58.160 37.037 0.00 0.00 39.25 2.39
1660 1845 0.515564 CAACGCCCTTCACTAAACGG 59.484 55.000 0.00 0.00 0.00 4.44
1734 1919 0.820226 TGAGCACAGATTCTCTCCCG 59.180 55.000 0.00 0.00 0.00 5.14
1752 1937 1.370900 GCTCCAACTTGCGCACTTG 60.371 57.895 11.12 14.86 0.00 3.16
1944 2239 4.704965 ACACCCTCTAGAAACTCAACAAC 58.295 43.478 0.00 0.00 0.00 3.32
2064 2359 8.865090 TCAAAAGGACACAATAATAACACCATT 58.135 29.630 0.00 0.00 0.00 3.16
2218 2514 1.266718 GCCAGCATTGAAGTTGAACGA 59.733 47.619 0.00 0.00 0.00 3.85
2239 2535 1.595794 TCCGCAGTGAACTTTTTCGTC 59.404 47.619 0.00 0.00 34.04 4.20
2281 2577 4.586001 ACAACATCTTTTGAATGGCACTCT 59.414 37.500 0.00 0.00 0.00 3.24
2375 2671 5.429957 ACAAGTTCTTCACAATCAAGCTC 57.570 39.130 0.00 0.00 0.00 4.09
2396 2692 3.626028 AATCCTGCAAGACGAAACAAC 57.374 42.857 0.00 0.00 34.07 3.32
2496 2792 7.594758 GCACACAAAGAAGCAAATCACTAATAA 59.405 33.333 0.00 0.00 0.00 1.40
2517 2813 0.102300 GGTGTCCAAACAAGGCACAC 59.898 55.000 0.00 0.00 37.08 3.82
2550 2846 7.174946 TCCTTAAACCTAAGATCAAAGTTGCTG 59.825 37.037 0.00 0.00 37.32 4.41
2594 2890 3.821033 ACAGTTTACTTCCAATGCCAGTC 59.179 43.478 0.00 0.00 0.00 3.51
2702 6005 7.428282 TTGTTCTTACTGCGAAATTGTATCA 57.572 32.000 0.00 0.00 0.00 2.15
2714 6018 4.756084 AGATGTGCTTTGTTCTTACTGC 57.244 40.909 0.00 0.00 0.00 4.40
2787 6097 1.358787 AGGATCCACAAATGGCTTCCA 59.641 47.619 15.82 0.00 46.80 3.53
2863 6173 4.748102 GTGAACAAACTGACGGTCATCTAA 59.252 41.667 11.86 0.00 0.00 2.10
3048 6519 5.179368 GCAGATTTATATCCGTTAAGCAGCA 59.821 40.000 0.00 0.00 0.00 4.41
3147 6618 5.384063 ACCTCTCTGCATATAGTTGATCG 57.616 43.478 0.00 0.00 0.00 3.69
3158 6629 1.143813 CCCCCAATACCTCTCTGCAT 58.856 55.000 0.00 0.00 0.00 3.96
3203 6674 6.517914 GTCATAGAAGTTCATTCCGATGAC 57.482 41.667 5.50 13.23 45.27 3.06
3243 6714 3.665745 ACACAATGAAACCTGGAATGC 57.334 42.857 0.00 0.00 0.00 3.56
3416 6960 2.627699 GTTGGCCCTGTCTGAAAAATCA 59.372 45.455 0.00 0.00 0.00 2.57
3430 6974 1.067974 GTTTTACACACCTGTTGGCCC 59.932 52.381 0.00 0.00 36.63 5.80
3547 7091 5.714333 AGGTCATATAGTCCTGCTATGTCAG 59.286 44.000 0.00 0.00 40.41 3.51
3548 7092 5.645201 AGGTCATATAGTCCTGCTATGTCA 58.355 41.667 0.00 0.00 40.41 3.58
3624 7190 7.119553 GCAGATAAATCTTTTCAATTTGCCCAA 59.880 33.333 0.00 0.00 34.22 4.12
3754 7325 5.309543 TGAGAAGGTGGGAAAATGAAGTAGA 59.690 40.000 0.00 0.00 0.00 2.59
3780 7351 3.248888 AGGCTGTAGGTTAACTGGAGTT 58.751 45.455 5.42 0.00 41.73 3.01
3868 7439 9.529325 CCATCAGATAGTTCGTTTTACTAATCA 57.471 33.333 0.00 0.00 32.28 2.57
3869 7440 9.530633 ACCATCAGATAGTTCGTTTTACTAATC 57.469 33.333 0.00 0.00 32.28 1.75
3894 7465 1.067846 TCGTATGACTGTCCTGTGCAC 60.068 52.381 10.75 10.75 0.00 4.57
3897 7468 1.544246 TGGTCGTATGACTGTCCTGTG 59.456 52.381 14.61 0.00 44.83 3.66
3898 7469 1.919240 TGGTCGTATGACTGTCCTGT 58.081 50.000 14.61 0.00 44.83 4.00
3917 7488 5.046014 AGTCTTAACTCTCAGTCCATGCAAT 60.046 40.000 0.00 0.00 0.00 3.56
3938 7509 0.787183 GCTGTGCTTCGTGAAGAGTC 59.213 55.000 13.60 3.61 40.79 3.36
3985 7556 2.304180 ACACCACAGATCTCAGGGAAAG 59.696 50.000 13.18 4.48 0.00 2.62
4016 7587 5.163764 CGCAACAGAGAAAATGCATACCTTA 60.164 40.000 0.00 0.00 38.69 2.69
4069 7640 3.119955 GGCACGAAAAATACAGAACTCCC 60.120 47.826 0.00 0.00 0.00 4.30
4087 7814 1.745653 GAAGCAGAACCCATAAGGCAC 59.254 52.381 0.00 0.00 40.58 5.01
4090 7818 2.025887 ACCTGAAGCAGAACCCATAAGG 60.026 50.000 0.00 0.00 35.97 2.69
4095 7823 2.024176 TCTACCTGAAGCAGAACCCA 57.976 50.000 0.00 0.00 32.44 4.51
4226 7954 4.826733 TCAGCAAGTTCTTCATGCCTAAAA 59.173 37.500 0.00 0.00 41.04 1.52
4325 8054 0.690762 TTTTTCGGGACCCTCCTCTG 59.309 55.000 9.41 0.00 36.57 3.35
4398 8218 7.331026 TGTTTTTCATAGTAGGGATCTCTGTG 58.669 38.462 4.99 0.00 0.00 3.66
4425 8245 3.815809 TCTTGTGTAAACAAGGGAGTGG 58.184 45.455 22.85 0.00 45.15 4.00
4539 9376 1.192146 TTCTGTTGGGACGGAGGGAG 61.192 60.000 0.00 0.00 41.95 4.30
4542 9379 0.320771 CACTTCTGTTGGGACGGAGG 60.321 60.000 0.00 0.00 41.95 4.30
4546 9383 2.240493 AAGACACTTCTGTTGGGACG 57.760 50.000 0.00 0.00 29.98 4.79
4547 9384 5.123936 AGTTTAAGACACTTCTGTTGGGAC 58.876 41.667 0.00 0.00 29.98 4.46
4548 9385 5.367945 AGTTTAAGACACTTCTGTTGGGA 57.632 39.130 0.00 0.00 29.98 4.37
4549 9386 6.766467 ACTAAGTTTAAGACACTTCTGTTGGG 59.234 38.462 0.00 0.00 35.95 4.12
4551 9388 9.309516 TGTACTAAGTTTAAGACACTTCTGTTG 57.690 33.333 0.00 0.00 35.95 3.33
4584 9421 8.853126 TGTCTCAACTTTGTACTAGCTTTAGTA 58.147 33.333 0.00 0.00 0.00 1.82
4585 9422 7.652507 GTGTCTCAACTTTGTACTAGCTTTAGT 59.347 37.037 0.00 0.00 0.00 2.24
4586 9423 7.868415 AGTGTCTCAACTTTGTACTAGCTTTAG 59.132 37.037 0.00 0.00 0.00 1.85
4587 9424 7.723324 AGTGTCTCAACTTTGTACTAGCTTTA 58.277 34.615 0.00 0.00 0.00 1.85
4588 9425 6.583562 AGTGTCTCAACTTTGTACTAGCTTT 58.416 36.000 0.00 0.00 0.00 3.51
4589 9426 6.163135 AGTGTCTCAACTTTGTACTAGCTT 57.837 37.500 0.00 0.00 0.00 3.74
4590 9427 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
4591 9428 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
4600 9437 9.832445 TCTGTCTTAAAATAAGTGTCTCAACTT 57.168 29.630 0.00 0.00 42.89 2.66
4601 9438 9.832445 TTCTGTCTTAAAATAAGTGTCTCAACT 57.168 29.630 0.00 0.00 0.00 3.16
4603 9440 9.273016 CCTTCTGTCTTAAAATAAGTGTCTCAA 57.727 33.333 0.00 0.00 0.00 3.02
4604 9441 8.647796 TCCTTCTGTCTTAAAATAAGTGTCTCA 58.352 33.333 0.00 0.00 0.00 3.27
4605 9442 9.145865 CTCCTTCTGTCTTAAAATAAGTGTCTC 57.854 37.037 0.00 0.00 0.00 3.36
4606 9443 8.652290 ACTCCTTCTGTCTTAAAATAAGTGTCT 58.348 33.333 0.00 0.00 0.00 3.41
4607 9444 8.834749 ACTCCTTCTGTCTTAAAATAAGTGTC 57.165 34.615 0.00 0.00 0.00 3.67
4608 9445 9.930693 CTACTCCTTCTGTCTTAAAATAAGTGT 57.069 33.333 0.00 0.00 0.00 3.55
4609 9446 9.930693 ACTACTCCTTCTGTCTTAAAATAAGTG 57.069 33.333 0.00 0.00 0.00 3.16
4612 9449 9.216117 GCAACTACTCCTTCTGTCTTAAAATAA 57.784 33.333 0.00 0.00 0.00 1.40
4613 9450 7.822822 GGCAACTACTCCTTCTGTCTTAAAATA 59.177 37.037 0.00 0.00 0.00 1.40
4614 9451 6.655425 GGCAACTACTCCTTCTGTCTTAAAAT 59.345 38.462 0.00 0.00 0.00 1.82
4615 9452 5.995897 GGCAACTACTCCTTCTGTCTTAAAA 59.004 40.000 0.00 0.00 0.00 1.52
4616 9453 5.548406 GGCAACTACTCCTTCTGTCTTAAA 58.452 41.667 0.00 0.00 0.00 1.52
4617 9454 5.148651 GGCAACTACTCCTTCTGTCTTAA 57.851 43.478 0.00 0.00 0.00 1.85
4618 9455 4.803098 GGCAACTACTCCTTCTGTCTTA 57.197 45.455 0.00 0.00 0.00 2.10
4619 9456 3.686916 GGCAACTACTCCTTCTGTCTT 57.313 47.619 0.00 0.00 0.00 3.01
4758 9598 2.028130 TGCCGTCCAAAAACAAGATGT 58.972 42.857 0.00 0.00 0.00 3.06
4829 9669 2.033141 ATGAGCTTGGCAGTGCGT 59.967 55.556 9.45 0.00 0.00 5.24
4831 9671 0.100682 CATGATGAGCTTGGCAGTGC 59.899 55.000 6.55 6.55 0.00 4.40
4833 9673 3.211865 CATACATGATGAGCTTGGCAGT 58.788 45.455 0.00 0.00 37.82 4.40
4960 9800 0.242825 CCGCAGTGAGAACTTACGGA 59.757 55.000 10.21 0.00 38.46 4.69
4961 9801 0.242825 TCCGCAGTGAGAACTTACGG 59.757 55.000 9.68 9.68 37.89 4.02
4962 9802 2.279582 ATCCGCAGTGAGAACTTACG 57.720 50.000 0.00 0.00 0.00 3.18
4963 9803 2.930682 GGAATCCGCAGTGAGAACTTAC 59.069 50.000 0.00 0.00 0.00 2.34
4964 9804 2.093658 GGGAATCCGCAGTGAGAACTTA 60.094 50.000 0.00 0.00 0.00 2.24
4965 9805 1.339151 GGGAATCCGCAGTGAGAACTT 60.339 52.381 0.00 0.00 0.00 2.66
4966 9806 0.250513 GGGAATCCGCAGTGAGAACT 59.749 55.000 0.00 0.00 0.00 3.01
4967 9807 0.744771 GGGGAATCCGCAGTGAGAAC 60.745 60.000 11.77 0.00 36.42 3.01
4968 9808 1.602237 GGGGAATCCGCAGTGAGAA 59.398 57.895 11.77 0.00 36.42 2.87
4969 9809 2.367202 GGGGGAATCCGCAGTGAGA 61.367 63.158 18.27 0.00 44.52 3.27
4970 9810 2.190578 GGGGGAATCCGCAGTGAG 59.809 66.667 18.27 0.00 44.52 3.51
5186 10027 1.662608 CATAGTCGCCGAGGAGCAT 59.337 57.895 0.00 0.00 0.00 3.79
5829 10684 4.019513 ATCCTCCACCACCCCCGA 62.020 66.667 0.00 0.00 0.00 5.14
5969 10825 2.518349 CACCGCCCACCAACTTGT 60.518 61.111 0.00 0.00 0.00 3.16
6000 10856 1.759459 GACCCCAGACGATCCATCCC 61.759 65.000 0.00 0.00 0.00 3.85
6165 11022 1.429148 GACGATGTTGCCCGGACATC 61.429 60.000 19.82 19.82 46.21 3.06
6300 11157 4.160635 GCCAACAACGGCGGATCG 62.161 66.667 13.24 0.00 43.52 3.69
6379 11237 3.513662 CCACGACCACACGATACAAATA 58.486 45.455 0.00 0.00 37.03 1.40
6441 11299 2.494870 GGCAAGTAACGGAGACTCCTAA 59.505 50.000 19.39 1.73 33.30 2.69
6442 11300 2.097825 GGCAAGTAACGGAGACTCCTA 58.902 52.381 19.39 3.17 33.30 2.94
6443 11301 0.896226 GGCAAGTAACGGAGACTCCT 59.104 55.000 19.39 4.21 33.30 3.69
6444 11302 0.606604 TGGCAAGTAACGGAGACTCC 59.393 55.000 11.87 11.87 0.00 3.85
6445 11303 2.029290 TCTTGGCAAGTAACGGAGACTC 60.029 50.000 25.39 0.00 0.00 3.36
6446 11304 1.968493 TCTTGGCAAGTAACGGAGACT 59.032 47.619 25.39 0.00 0.00 3.24
6447 11305 2.450609 TCTTGGCAAGTAACGGAGAC 57.549 50.000 25.39 0.00 0.00 3.36
6448 11306 2.565391 TGATCTTGGCAAGTAACGGAGA 59.435 45.455 25.39 5.41 0.00 3.71
6449 11307 2.972625 TGATCTTGGCAAGTAACGGAG 58.027 47.619 25.39 0.00 0.00 4.63
6490 11348 1.522668 TGGTGGAAGTTCTTCATGCG 58.477 50.000 13.44 0.00 0.00 4.73
6529 11387 0.257039 ATGGCCCATGTTCAGAGGAC 59.743 55.000 0.00 0.00 0.00 3.85
6533 11391 1.410507 CCATCATGGCCCATGTTCAGA 60.411 52.381 22.70 4.00 41.98 3.27
6586 11444 1.071699 TGAGTTGGAGGAAAAGTCCCG 59.928 52.381 0.00 0.00 46.30 5.14
6587 11445 2.951229 TGAGTTGGAGGAAAAGTCCC 57.049 50.000 0.00 0.00 46.30 4.46
6650 11541 6.654161 ACCAGATCTGATTTTCTATGCTATGC 59.346 38.462 24.62 0.00 0.00 3.14
6760 11654 6.773685 AGCAGTATACCACCAAACTAACAAAA 59.226 34.615 0.00 0.00 0.00 2.44
6830 11724 3.393426 TCTGGTTATAGTCCTCCGGTT 57.607 47.619 0.00 0.00 0.00 4.44
6843 11737 5.874810 GCTTATCACTGTTGACATCTGGTTA 59.125 40.000 0.00 0.00 33.38 2.85
6959 12261 4.191662 GTGTTTTCACGTCGAACTGAAT 57.808 40.909 0.00 0.00 41.13 2.57
6988 12290 2.403259 GTTGTCTTTTCCCATTTGCGG 58.597 47.619 0.00 0.00 0.00 5.69
6996 12298 4.340950 TGATTGTTCTGGTTGTCTTTTCCC 59.659 41.667 0.00 0.00 0.00 3.97
7099 12401 6.431543 TGTGGGTAAACGATATCAAAACACAT 59.568 34.615 3.12 0.00 0.00 3.21
7106 12408 4.509616 CACCTGTGGGTAAACGATATCAA 58.490 43.478 3.12 0.00 45.41 2.57
7177 12479 2.361119 AGCCATATCGCTCTTCGTGTAA 59.639 45.455 0.00 0.00 39.67 2.41
7547 12868 7.935755 AGTGATCCTATTATGAATCACACAAGG 59.064 37.037 14.62 0.00 40.38 3.61
7690 15493 1.407437 GGGGTGTCAGGTTCATAGCAG 60.407 57.143 0.00 0.00 0.00 4.24
7691 15494 0.618458 GGGGTGTCAGGTTCATAGCA 59.382 55.000 0.00 0.00 0.00 3.49
7692 15495 0.107165 GGGGGTGTCAGGTTCATAGC 60.107 60.000 0.00 0.00 0.00 2.97
7693 15496 1.210478 CAGGGGGTGTCAGGTTCATAG 59.790 57.143 0.00 0.00 0.00 2.23
7694 15497 1.285280 CAGGGGGTGTCAGGTTCATA 58.715 55.000 0.00 0.00 0.00 2.15
7695 15498 2.078452 CAGGGGGTGTCAGGTTCAT 58.922 57.895 0.00 0.00 0.00 2.57
7696 15499 2.829384 GCAGGGGGTGTCAGGTTCA 61.829 63.158 0.00 0.00 0.00 3.18
7697 15500 2.034221 GCAGGGGGTGTCAGGTTC 59.966 66.667 0.00 0.00 0.00 3.62
7698 15501 2.450502 AGCAGGGGGTGTCAGGTT 60.451 61.111 0.00 0.00 0.00 3.50
7699 15502 2.930562 GAGCAGGGGGTGTCAGGT 60.931 66.667 0.00 0.00 0.00 4.00
7700 15503 3.721706 GGAGCAGGGGGTGTCAGG 61.722 72.222 0.00 0.00 0.00 3.86
7732 15546 1.339929 ACGAACAAAAGGACCAATGCC 59.660 47.619 0.00 0.00 0.00 4.40
7734 15548 2.884639 AGGACGAACAAAAGGACCAATG 59.115 45.455 0.00 0.00 0.00 2.82
7738 15552 3.064931 CACTAGGACGAACAAAAGGACC 58.935 50.000 0.00 0.00 0.00 4.46
7790 15604 4.720127 TACCGAGACGCAGGTACA 57.280 55.556 0.00 0.00 41.63 2.90
7811 15625 2.653726 AGTTCAAAGGCACACATGACA 58.346 42.857 0.00 0.00 35.60 3.58
7939 15753 7.059202 AGATTTGATTTATTCCAGCAATCCC 57.941 36.000 0.00 0.00 0.00 3.85
8037 15851 6.420604 CGGTTTGCACACTTAAATCTGAATTT 59.579 34.615 2.52 0.00 38.61 1.82
8042 15856 3.974401 CACGGTTTGCACACTTAAATCTG 59.026 43.478 2.52 0.00 0.00 2.90
8091 15944 9.678260 AATTTAATGATAGATATGGTCAGAGGC 57.322 33.333 0.00 0.00 0.00 4.70
8137 15990 2.030274 AGGCACCGCAGACAAATAAAAC 60.030 45.455 0.00 0.00 0.00 2.43
8144 15997 2.031012 CTCAGGCACCGCAGACAA 59.969 61.111 0.00 0.00 0.00 3.18
8153 16006 1.297456 GAGCTTCTGCACTCAGGCAC 61.297 60.000 0.00 0.00 42.74 5.01
8162 16015 2.216046 CACTGACAAAGAGCTTCTGCA 58.784 47.619 0.00 0.00 42.74 4.41
8179 16032 3.190118 GCAGCAAGCAATCTTAGAACACT 59.810 43.478 0.00 0.00 44.79 3.55
8180 16033 3.496155 GCAGCAAGCAATCTTAGAACAC 58.504 45.455 0.00 0.00 44.79 3.32
8181 16034 3.837213 GCAGCAAGCAATCTTAGAACA 57.163 42.857 0.00 0.00 44.79 3.18
8193 16046 4.400961 ACGGAGGGAGCAGCAAGC 62.401 66.667 0.00 0.00 46.19 4.01
8194 16047 2.125350 GACGGAGGGAGCAGCAAG 60.125 66.667 0.00 0.00 0.00 4.01
8195 16048 3.706373 GGACGGAGGGAGCAGCAA 61.706 66.667 0.00 0.00 0.00 3.91
8196 16049 4.704103 AGGACGGAGGGAGCAGCA 62.704 66.667 0.00 0.00 0.00 4.41
8197 16050 4.154347 CAGGACGGAGGGAGCAGC 62.154 72.222 0.00 0.00 0.00 5.25
8198 16051 0.970937 TTACAGGACGGAGGGAGCAG 60.971 60.000 0.00 0.00 0.00 4.24
8199 16052 0.325296 ATTACAGGACGGAGGGAGCA 60.325 55.000 0.00 0.00 0.00 4.26
8200 16053 1.700955 TATTACAGGACGGAGGGAGC 58.299 55.000 0.00 0.00 0.00 4.70
8201 16054 4.404640 TGTATATTACAGGACGGAGGGAG 58.595 47.826 0.00 0.00 34.06 4.30
8202 16055 4.458256 TGTATATTACAGGACGGAGGGA 57.542 45.455 0.00 0.00 34.06 4.20
8203 16056 5.740290 ATTGTATATTACAGGACGGAGGG 57.260 43.478 0.00 0.00 40.24 4.30
8204 16057 9.720769 AAAATATTGTATATTACAGGACGGAGG 57.279 33.333 0.00 0.00 40.24 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.