Multiple sequence alignment - TraesCS5B01G212500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G212500 chr5B 100.000 2690 0 0 1 2690 383034787 383037476 0.000000e+00 4968.0
1 TraesCS5B01G212500 chr5A 90.779 1464 94 22 468 1906 426731236 426729789 0.000000e+00 1917.0
2 TraesCS5B01G212500 chr5A 86.062 452 29 16 1978 2408 426729791 426729353 3.160000e-124 455.0
3 TraesCS5B01G212500 chr5A 87.629 291 36 0 2399 2689 426729331 426729041 3.320000e-89 339.0
4 TraesCS5B01G212500 chr5A 90.826 109 6 1 365 473 426733217 426733113 2.790000e-30 143.0
5 TraesCS5B01G212500 chr5D 91.708 1411 61 19 762 2150 330078113 330079489 0.000000e+00 1906.0
6 TraesCS5B01G212500 chr5D 91.000 400 21 6 365 753 330077676 330078071 2.370000e-145 525.0
7 TraesCS5B01G212500 chr5D 89.971 349 23 6 2349 2689 330079585 330079929 8.840000e-120 440.0
8 TraesCS5B01G212500 chr5D 85.714 105 4 2 2178 2282 330079489 330079582 1.700000e-17 100.0
9 TraesCS5B01G212500 chr5D 91.935 62 5 0 308 369 335759384 335759323 1.330000e-13 87.9
10 TraesCS5B01G212500 chr7A 80.100 201 31 8 1249 1445 609431477 609431282 1.000000e-29 141.0
11 TraesCS5B01G212500 chr7A 90.385 104 9 1 266 369 731738819 731738717 4.670000e-28 135.0
12 TraesCS5B01G212500 chr7D 78.972 214 36 8 1245 1454 529956416 529956208 1.300000e-28 137.0
13 TraesCS5B01G212500 chr7D 77.311 119 20 1 20 131 420766801 420766919 2.240000e-06 63.9
14 TraesCS5B01G212500 chr7B 78.972 214 36 8 1245 1454 568107384 568107176 1.300000e-28 137.0
15 TraesCS5B01G212500 chr3A 87.719 114 10 2 260 369 27798992 27799105 2.170000e-26 130.0
16 TraesCS5B01G212500 chr2A 85.345 116 14 3 256 369 769062985 769062871 1.690000e-22 117.0
17 TraesCS5B01G212500 chr6B 76.166 193 37 6 6 191 437842155 437841965 2.850000e-15 93.5
18 TraesCS5B01G212500 chr6B 97.561 41 1 0 1365 1405 143199939 143199899 1.340000e-08 71.3
19 TraesCS5B01G212500 chr6B 92.105 38 3 0 27 64 542016628 542016665 1.000000e-03 54.7
20 TraesCS5B01G212500 chr6D 78.289 152 22 6 16 160 289210545 289210692 1.330000e-13 87.9
21 TraesCS5B01G212500 chr6D 77.707 157 26 5 20 168 426074918 426074763 1.330000e-13 87.9
22 TraesCS5B01G212500 chr6D 90.909 55 5 0 1365 1419 68098833 68098779 1.030000e-09 75.0
23 TraesCS5B01G212500 chr6D 100.000 28 0 0 38 65 360344865 360344892 5.000000e-03 52.8
24 TraesCS5B01G212500 chr6A 76.471 170 29 10 1255 1419 85586704 85586541 6.170000e-12 82.4
25 TraesCS5B01G212500 chr6A 92.308 39 3 0 27 65 501502828 501502866 3.740000e-04 56.5
26 TraesCS5B01G212500 chr1D 91.304 46 3 1 21 66 9868081 9868125 8.040000e-06 62.1
27 TraesCS5B01G212500 chr3D 100.000 29 0 0 1088 1116 36372572 36372544 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G212500 chr5B 383034787 383037476 2689 False 4968.00 4968 100.00000 1 2690 1 chr5B.!!$F1 2689
1 TraesCS5B01G212500 chr5A 426729041 426733217 4176 True 713.50 1917 88.82400 365 2689 4 chr5A.!!$R1 2324
2 TraesCS5B01G212500 chr5D 330077676 330079929 2253 False 742.75 1906 89.59825 365 2689 4 chr5D.!!$F1 2324

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
255 256 0.03759 ATACTCAGCCGGCAAACCAA 59.962 50.0 31.54 9.7 34.57 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1956 3919 0.107831 ACGGCAGAAAACTACAGCCA 59.892 50.0 0.0 0.0 45.47 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.279741 TGTCGCATCTATTCAAGCACC 58.720 47.619 0.00 0.00 0.00 5.01
21 22 1.258982 GTCGCATCTATTCAAGCACCG 59.741 52.381 0.00 0.00 0.00 4.94
22 23 0.041839 CGCATCTATTCAAGCACCGC 60.042 55.000 0.00 0.00 0.00 5.68
23 24 1.016627 GCATCTATTCAAGCACCGCA 58.983 50.000 0.00 0.00 0.00 5.69
24 25 1.268234 GCATCTATTCAAGCACCGCAC 60.268 52.381 0.00 0.00 0.00 5.34
25 26 1.331756 CATCTATTCAAGCACCGCACC 59.668 52.381 0.00 0.00 0.00 5.01
26 27 0.613260 TCTATTCAAGCACCGCACCT 59.387 50.000 0.00 0.00 0.00 4.00
27 28 0.729116 CTATTCAAGCACCGCACCTG 59.271 55.000 0.00 0.00 0.00 4.00
28 29 1.305219 TATTCAAGCACCGCACCTGC 61.305 55.000 0.00 0.00 37.78 4.85
34 35 4.415150 CACCGCACCTGCCAGGAT 62.415 66.667 19.90 0.00 37.67 3.24
35 36 3.650950 ACCGCACCTGCCAGGATT 61.651 61.111 19.90 0.00 37.67 3.01
36 37 3.136123 CCGCACCTGCCAGGATTG 61.136 66.667 19.90 7.43 37.67 2.67
37 38 2.046023 CGCACCTGCCAGGATTGA 60.046 61.111 19.90 0.00 37.67 2.57
38 39 1.675310 CGCACCTGCCAGGATTGAA 60.675 57.895 19.90 0.00 37.67 2.69
39 40 1.243342 CGCACCTGCCAGGATTGAAA 61.243 55.000 19.90 0.00 37.67 2.69
40 41 0.968405 GCACCTGCCAGGATTGAAAA 59.032 50.000 19.90 0.00 37.67 2.29
41 42 1.344114 GCACCTGCCAGGATTGAAAAA 59.656 47.619 19.90 0.00 37.67 1.94
42 43 2.867647 GCACCTGCCAGGATTGAAAAAC 60.868 50.000 19.90 0.00 37.67 2.43
43 44 2.629617 CACCTGCCAGGATTGAAAAACT 59.370 45.455 19.90 0.00 37.67 2.66
44 45 2.893489 ACCTGCCAGGATTGAAAAACTC 59.107 45.455 19.90 0.00 37.67 3.01
45 46 3.160269 CCTGCCAGGATTGAAAAACTCT 58.840 45.455 4.15 0.00 37.67 3.24
46 47 4.202567 ACCTGCCAGGATTGAAAAACTCTA 60.203 41.667 19.90 0.00 37.67 2.43
47 48 4.766891 CCTGCCAGGATTGAAAAACTCTAA 59.233 41.667 4.15 0.00 37.67 2.10
48 49 5.335976 CCTGCCAGGATTGAAAAACTCTAAC 60.336 44.000 4.15 0.00 37.67 2.34
49 50 4.522789 TGCCAGGATTGAAAAACTCTAACC 59.477 41.667 0.00 0.00 0.00 2.85
50 51 4.767409 GCCAGGATTGAAAAACTCTAACCT 59.233 41.667 0.00 0.00 0.00 3.50
51 52 5.944007 GCCAGGATTGAAAAACTCTAACCTA 59.056 40.000 0.00 0.00 0.00 3.08
52 53 6.433093 GCCAGGATTGAAAAACTCTAACCTAA 59.567 38.462 0.00 0.00 0.00 2.69
53 54 7.039993 GCCAGGATTGAAAAACTCTAACCTAAA 60.040 37.037 0.00 0.00 0.00 1.85
54 55 8.297426 CCAGGATTGAAAAACTCTAACCTAAAC 58.703 37.037 0.00 0.00 0.00 2.01
55 56 9.067986 CAGGATTGAAAAACTCTAACCTAAACT 57.932 33.333 0.00 0.00 0.00 2.66
64 65 9.993454 AAAACTCTAACCTAAACTACTAACCAG 57.007 33.333 0.00 0.00 0.00 4.00
65 66 7.715266 ACTCTAACCTAAACTACTAACCAGG 57.285 40.000 0.00 0.00 0.00 4.45
66 67 6.154192 ACTCTAACCTAAACTACTAACCAGGC 59.846 42.308 0.00 0.00 0.00 4.85
67 68 6.018469 TCTAACCTAAACTACTAACCAGGCA 58.982 40.000 0.00 0.00 0.00 4.75
68 69 4.548451 ACCTAAACTACTAACCAGGCAC 57.452 45.455 0.00 0.00 0.00 5.01
69 70 3.262660 ACCTAAACTACTAACCAGGCACC 59.737 47.826 0.00 0.00 0.00 5.01
70 71 2.467566 AAACTACTAACCAGGCACCG 57.532 50.000 0.00 0.00 0.00 4.94
71 72 0.611714 AACTACTAACCAGGCACCGG 59.388 55.000 0.00 0.00 0.00 5.28
72 73 1.262640 ACTACTAACCAGGCACCGGG 61.263 60.000 6.32 4.11 37.31 5.73
73 74 0.974010 CTACTAACCAGGCACCGGGA 60.974 60.000 13.17 0.00 35.27 5.14
74 75 0.325860 TACTAACCAGGCACCGGGAT 60.326 55.000 13.17 3.22 35.27 3.85
75 76 1.146263 CTAACCAGGCACCGGGATC 59.854 63.158 13.17 0.00 35.27 3.36
76 77 2.325393 CTAACCAGGCACCGGGATCC 62.325 65.000 13.17 1.92 35.27 3.36
88 89 4.843331 GGATCCCCCTCCCTGCCA 62.843 72.222 0.00 0.00 0.00 4.92
89 90 2.451294 GATCCCCCTCCCTGCCAT 60.451 66.667 0.00 0.00 0.00 4.40
90 91 2.451294 ATCCCCCTCCCTGCCATC 60.451 66.667 0.00 0.00 0.00 3.51
93 94 3.866582 CCCCTCCCTGCCATCGAC 61.867 72.222 0.00 0.00 0.00 4.20
94 95 3.866582 CCCTCCCTGCCATCGACC 61.867 72.222 0.00 0.00 0.00 4.79
95 96 4.227134 CCTCCCTGCCATCGACCG 62.227 72.222 0.00 0.00 0.00 4.79
96 97 4.899239 CTCCCTGCCATCGACCGC 62.899 72.222 0.00 0.00 0.00 5.68
115 116 4.741239 GGGGTGGCAGGGAGAGGA 62.741 72.222 0.00 0.00 0.00 3.71
116 117 3.086600 GGGTGGCAGGGAGAGGAG 61.087 72.222 0.00 0.00 0.00 3.69
117 118 2.039624 GGTGGCAGGGAGAGGAGA 59.960 66.667 0.00 0.00 0.00 3.71
118 119 2.063378 GGTGGCAGGGAGAGGAGAG 61.063 68.421 0.00 0.00 0.00 3.20
119 120 2.063378 GTGGCAGGGAGAGGAGAGG 61.063 68.421 0.00 0.00 0.00 3.69
120 121 2.249125 TGGCAGGGAGAGGAGAGGA 61.249 63.158 0.00 0.00 0.00 3.71
121 122 1.002274 GGCAGGGAGAGGAGAGGAA 59.998 63.158 0.00 0.00 0.00 3.36
122 123 0.618968 GGCAGGGAGAGGAGAGGAAA 60.619 60.000 0.00 0.00 0.00 3.13
123 124 1.280457 GCAGGGAGAGGAGAGGAAAA 58.720 55.000 0.00 0.00 0.00 2.29
124 125 1.843206 GCAGGGAGAGGAGAGGAAAAT 59.157 52.381 0.00 0.00 0.00 1.82
125 126 2.158827 GCAGGGAGAGGAGAGGAAAATC 60.159 54.545 0.00 0.00 0.00 2.17
126 127 2.437651 CAGGGAGAGGAGAGGAAAATCC 59.562 54.545 0.00 0.00 36.58 3.01
127 128 2.046447 AGGGAGAGGAGAGGAAAATCCA 59.954 50.000 0.00 0.00 39.61 3.41
128 129 2.171659 GGGAGAGGAGAGGAAAATCCAC 59.828 54.545 0.00 0.00 39.61 4.02
129 130 2.159028 GGAGAGGAGAGGAAAATCCACG 60.159 54.545 0.00 0.00 39.61 4.94
130 131 1.834263 AGAGGAGAGGAAAATCCACGG 59.166 52.381 0.00 0.00 39.61 4.94
131 132 1.831736 GAGGAGAGGAAAATCCACGGA 59.168 52.381 0.00 0.00 39.61 4.69
132 133 1.555533 AGGAGAGGAAAATCCACGGAC 59.444 52.381 0.00 0.00 39.61 4.79
133 134 1.555533 GGAGAGGAAAATCCACGGACT 59.444 52.381 0.00 0.00 39.61 3.85
134 135 2.418884 GGAGAGGAAAATCCACGGACTC 60.419 54.545 0.00 0.00 39.61 3.36
135 136 2.233922 GAGAGGAAAATCCACGGACTCA 59.766 50.000 0.00 0.00 39.61 3.41
136 137 2.028020 AGAGGAAAATCCACGGACTCAC 60.028 50.000 0.00 0.00 39.61 3.51
137 138 1.003233 AGGAAAATCCACGGACTCACC 59.997 52.381 0.00 0.00 39.61 4.02
147 148 3.249687 GGACTCACCGGCAAAATCT 57.750 52.632 0.00 0.00 0.00 2.40
148 149 0.804989 GGACTCACCGGCAAAATCTG 59.195 55.000 0.00 0.00 0.00 2.90
149 150 0.804989 GACTCACCGGCAAAATCTGG 59.195 55.000 0.00 0.00 38.47 3.86
150 151 0.400213 ACTCACCGGCAAAATCTGGA 59.600 50.000 0.00 0.00 36.35 3.86
151 152 1.089920 CTCACCGGCAAAATCTGGAG 58.910 55.000 0.00 0.00 36.35 3.86
152 153 0.322456 TCACCGGCAAAATCTGGAGG 60.322 55.000 0.00 0.00 36.35 4.30
153 154 1.000896 ACCGGCAAAATCTGGAGGG 60.001 57.895 0.00 0.00 36.35 4.30
154 155 1.754234 CCGGCAAAATCTGGAGGGG 60.754 63.158 0.00 0.00 34.34 4.79
155 156 1.302949 CGGCAAAATCTGGAGGGGA 59.697 57.895 0.00 0.00 0.00 4.81
156 157 0.749454 CGGCAAAATCTGGAGGGGAG 60.749 60.000 0.00 0.00 0.00 4.30
157 158 0.625849 GGCAAAATCTGGAGGGGAGA 59.374 55.000 0.00 0.00 0.00 3.71
158 159 1.409381 GGCAAAATCTGGAGGGGAGAG 60.409 57.143 0.00 0.00 0.00 3.20
159 160 1.283321 GCAAAATCTGGAGGGGAGAGT 59.717 52.381 0.00 0.00 0.00 3.24
160 161 2.291217 GCAAAATCTGGAGGGGAGAGTT 60.291 50.000 0.00 0.00 29.24 3.01
161 162 3.815757 GCAAAATCTGGAGGGGAGAGTTT 60.816 47.826 0.00 0.00 38.04 2.66
162 163 3.728385 AAATCTGGAGGGGAGAGTTTG 57.272 47.619 0.00 0.00 0.00 2.93
163 164 1.589414 ATCTGGAGGGGAGAGTTTGG 58.411 55.000 0.00 0.00 0.00 3.28
164 165 1.201429 TCTGGAGGGGAGAGTTTGGC 61.201 60.000 0.00 0.00 0.00 4.52
165 166 2.203549 CTGGAGGGGAGAGTTTGGCC 62.204 65.000 0.00 0.00 0.00 5.36
166 167 1.925972 GGAGGGGAGAGTTTGGCCT 60.926 63.158 3.32 0.00 0.00 5.19
167 168 0.620700 GGAGGGGAGAGTTTGGCCTA 60.621 60.000 3.32 0.00 0.00 3.93
168 169 0.833949 GAGGGGAGAGTTTGGCCTAG 59.166 60.000 3.32 0.00 0.00 3.02
169 170 1.224870 GGGGAGAGTTTGGCCTAGC 59.775 63.158 3.32 0.00 0.00 3.42
194 195 3.416351 GGGGGAGGGAAGGAGTTG 58.584 66.667 0.00 0.00 0.00 3.16
195 196 1.229853 GGGGGAGGGAAGGAGTTGA 60.230 63.158 0.00 0.00 0.00 3.18
196 197 1.275421 GGGGGAGGGAAGGAGTTGAG 61.275 65.000 0.00 0.00 0.00 3.02
197 198 1.275421 GGGGAGGGAAGGAGTTGAGG 61.275 65.000 0.00 0.00 0.00 3.86
198 199 0.252742 GGGAGGGAAGGAGTTGAGGA 60.253 60.000 0.00 0.00 0.00 3.71
199 200 1.199615 GGAGGGAAGGAGTTGAGGAG 58.800 60.000 0.00 0.00 0.00 3.69
200 201 1.199615 GAGGGAAGGAGTTGAGGAGG 58.800 60.000 0.00 0.00 0.00 4.30
201 202 0.793617 AGGGAAGGAGTTGAGGAGGA 59.206 55.000 0.00 0.00 0.00 3.71
202 203 1.199615 GGGAAGGAGTTGAGGAGGAG 58.800 60.000 0.00 0.00 0.00 3.69
203 204 1.199615 GGAAGGAGTTGAGGAGGAGG 58.800 60.000 0.00 0.00 0.00 4.30
204 205 1.273324 GGAAGGAGTTGAGGAGGAGGA 60.273 57.143 0.00 0.00 0.00 3.71
205 206 2.541466 GAAGGAGTTGAGGAGGAGGAA 58.459 52.381 0.00 0.00 0.00 3.36
206 207 2.959421 AGGAGTTGAGGAGGAGGAAT 57.041 50.000 0.00 0.00 0.00 3.01
207 208 4.290942 GAAGGAGTTGAGGAGGAGGAATA 58.709 47.826 0.00 0.00 0.00 1.75
208 209 4.354208 AGGAGTTGAGGAGGAGGAATAA 57.646 45.455 0.00 0.00 0.00 1.40
209 210 4.901927 AGGAGTTGAGGAGGAGGAATAAT 58.098 43.478 0.00 0.00 0.00 1.28
210 211 4.904853 AGGAGTTGAGGAGGAGGAATAATC 59.095 45.833 0.00 0.00 0.00 1.75
211 212 4.041075 GGAGTTGAGGAGGAGGAATAATCC 59.959 50.000 0.00 0.00 46.98 3.01
231 232 3.660865 CCAACTTTGGTACTACTTCGCT 58.339 45.455 0.00 0.00 43.43 4.93
232 233 4.813027 CCAACTTTGGTACTACTTCGCTA 58.187 43.478 0.00 0.00 43.43 4.26
233 234 5.416947 CCAACTTTGGTACTACTTCGCTAT 58.583 41.667 0.00 0.00 43.43 2.97
234 235 5.873164 CCAACTTTGGTACTACTTCGCTATT 59.127 40.000 0.00 0.00 43.43 1.73
235 236 6.035758 CCAACTTTGGTACTACTTCGCTATTC 59.964 42.308 0.00 0.00 43.43 1.75
236 237 6.276832 ACTTTGGTACTACTTCGCTATTCA 57.723 37.500 0.00 0.00 0.00 2.57
237 238 6.875076 ACTTTGGTACTACTTCGCTATTCAT 58.125 36.000 0.00 0.00 0.00 2.57
238 239 8.004087 ACTTTGGTACTACTTCGCTATTCATA 57.996 34.615 0.00 0.00 0.00 2.15
239 240 7.919621 ACTTTGGTACTACTTCGCTATTCATAC 59.080 37.037 0.00 0.00 0.00 2.39
240 241 7.578310 TTGGTACTACTTCGCTATTCATACT 57.422 36.000 0.00 0.00 0.00 2.12
241 242 7.199541 TGGTACTACTTCGCTATTCATACTC 57.800 40.000 0.00 0.00 0.00 2.59
242 243 6.769341 TGGTACTACTTCGCTATTCATACTCA 59.231 38.462 0.00 0.00 0.00 3.41
243 244 7.041303 TGGTACTACTTCGCTATTCATACTCAG 60.041 40.741 0.00 0.00 0.00 3.35
244 245 5.764131 ACTACTTCGCTATTCATACTCAGC 58.236 41.667 0.00 0.00 0.00 4.26
245 246 3.983741 ACTTCGCTATTCATACTCAGCC 58.016 45.455 0.00 0.00 0.00 4.85
246 247 2.706555 TCGCTATTCATACTCAGCCG 57.293 50.000 0.00 0.00 0.00 5.52
247 248 1.269723 TCGCTATTCATACTCAGCCGG 59.730 52.381 0.00 0.00 0.00 6.13
248 249 1.433534 GCTATTCATACTCAGCCGGC 58.566 55.000 21.89 21.89 0.00 6.13
249 250 1.270305 GCTATTCATACTCAGCCGGCA 60.270 52.381 31.54 7.75 0.00 5.69
250 251 2.806745 GCTATTCATACTCAGCCGGCAA 60.807 50.000 31.54 15.79 0.00 4.52
251 252 2.418368 ATTCATACTCAGCCGGCAAA 57.582 45.000 31.54 15.37 0.00 3.68
252 253 1.448985 TTCATACTCAGCCGGCAAAC 58.551 50.000 31.54 0.00 0.00 2.93
253 254 0.392461 TCATACTCAGCCGGCAAACC 60.392 55.000 31.54 0.00 0.00 3.27
254 255 0.676466 CATACTCAGCCGGCAAACCA 60.676 55.000 31.54 11.15 34.57 3.67
255 256 0.037590 ATACTCAGCCGGCAAACCAA 59.962 50.000 31.54 9.70 34.57 3.67
256 257 0.037590 TACTCAGCCGGCAAACCAAT 59.962 50.000 31.54 9.50 34.57 3.16
257 258 1.213537 CTCAGCCGGCAAACCAATG 59.786 57.895 31.54 16.59 34.57 2.82
258 259 2.432972 CAGCCGGCAAACCAATGC 60.433 61.111 31.54 0.00 45.67 3.56
296 297 9.850628 TGAAAGCATCAAGATTTTATTTCTCAG 57.149 29.630 0.00 0.00 35.66 3.35
311 312 9.884636 TTTATTTCTCAGATAATCGAAAGGTCA 57.115 29.630 0.00 0.00 0.00 4.02
313 314 8.970859 ATTTCTCAGATAATCGAAAGGTCATT 57.029 30.769 0.00 0.00 0.00 2.57
314 315 8.792830 TTTCTCAGATAATCGAAAGGTCATTT 57.207 30.769 0.00 0.00 0.00 2.32
315 316 9.884636 TTTCTCAGATAATCGAAAGGTCATTTA 57.115 29.630 0.00 0.00 0.00 1.40
321 322 9.726438 AGATAATCGAAAGGTCATTTATAAGGG 57.274 33.333 0.00 0.00 0.00 3.95
322 323 9.720769 GATAATCGAAAGGTCATTTATAAGGGA 57.279 33.333 0.00 0.00 0.00 4.20
324 325 8.996651 AATCGAAAGGTCATTTATAAGGGAAT 57.003 30.769 0.00 0.00 0.00 3.01
326 327 9.726438 ATCGAAAGGTCATTTATAAGGGAATAG 57.274 33.333 0.00 0.00 0.00 1.73
327 328 8.154856 TCGAAAGGTCATTTATAAGGGAATAGG 58.845 37.037 0.00 0.00 0.00 2.57
328 329 8.154856 CGAAAGGTCATTTATAAGGGAATAGGA 58.845 37.037 0.00 0.00 0.00 2.94
329 330 9.862149 GAAAGGTCATTTATAAGGGAATAGGAA 57.138 33.333 0.00 0.00 0.00 3.36
341 342 9.828691 ATAAGGGAATAGGAAATAAAATCAGGG 57.171 33.333 0.00 0.00 0.00 4.45
342 343 7.480222 AGGGAATAGGAAATAAAATCAGGGA 57.520 36.000 0.00 0.00 0.00 4.20
343 344 7.893482 AGGGAATAGGAAATAAAATCAGGGAA 58.107 34.615 0.00 0.00 0.00 3.97
344 345 7.785028 AGGGAATAGGAAATAAAATCAGGGAAC 59.215 37.037 0.00 0.00 0.00 3.62
345 346 7.255486 GGGAATAGGAAATAAAATCAGGGAACG 60.255 40.741 0.00 0.00 0.00 3.95
346 347 7.284716 GGAATAGGAAATAAAATCAGGGAACGT 59.715 37.037 0.00 0.00 0.00 3.99
347 348 9.333724 GAATAGGAAATAAAATCAGGGAACGTA 57.666 33.333 0.00 0.00 0.00 3.57
348 349 8.904099 ATAGGAAATAAAATCAGGGAACGTAG 57.096 34.615 0.00 0.00 0.00 3.51
349 350 6.954232 AGGAAATAAAATCAGGGAACGTAGA 58.046 36.000 0.00 0.00 0.00 2.59
350 351 7.048512 AGGAAATAAAATCAGGGAACGTAGAG 58.951 38.462 0.00 0.00 0.00 2.43
351 352 6.822170 GGAAATAAAATCAGGGAACGTAGAGT 59.178 38.462 0.00 0.00 0.00 3.24
352 353 7.011202 GGAAATAAAATCAGGGAACGTAGAGTC 59.989 40.741 0.00 0.00 0.00 3.36
353 354 3.889520 AAATCAGGGAACGTAGAGTCC 57.110 47.619 0.00 0.00 35.17 3.85
361 362 4.941325 GGAACGTAGAGTCCCAAAATTC 57.059 45.455 0.00 0.00 30.95 2.17
362 363 4.320870 GGAACGTAGAGTCCCAAAATTCA 58.679 43.478 0.00 0.00 30.95 2.57
363 364 4.392138 GGAACGTAGAGTCCCAAAATTCAG 59.608 45.833 0.00 0.00 30.95 3.02
382 383 8.422577 AATTCAGAAGTTAATTTGCCCTACTT 57.577 30.769 0.00 0.00 0.00 2.24
395 396 2.551071 GCCCTACTTGCTGGCCTAATAG 60.551 54.545 3.32 0.00 39.30 1.73
396 397 2.972713 CCCTACTTGCTGGCCTAATAGA 59.027 50.000 3.32 0.00 0.00 1.98
397 398 3.584848 CCCTACTTGCTGGCCTAATAGAT 59.415 47.826 3.32 0.00 0.00 1.98
398 399 4.777896 CCCTACTTGCTGGCCTAATAGATA 59.222 45.833 3.32 0.00 0.00 1.98
419 420 3.596214 AGATGGATCAAACACACCGTAC 58.404 45.455 0.00 0.00 0.00 3.67
466 2349 2.688507 TCGCTAAGCAAGACCTTCAAG 58.311 47.619 0.00 0.00 0.00 3.02
470 2353 4.143094 CGCTAAGCAAGACCTTCAAGTAAC 60.143 45.833 0.00 0.00 0.00 2.50
483 2366 2.158871 TCAAGTAACCGGCAGTTGACTT 60.159 45.455 18.40 5.03 39.67 3.01
753 2656 5.888161 CCTAATGGCTGGATCAAAGTTAACT 59.112 40.000 1.12 1.12 0.00 2.24
756 2659 4.724399 TGGCTGGATCAAAGTTAACTCAA 58.276 39.130 8.95 0.00 0.00 3.02
757 2660 5.324409 TGGCTGGATCAAAGTTAACTCAAT 58.676 37.500 8.95 2.93 0.00 2.57
759 2662 5.415701 GGCTGGATCAAAGTTAACTCAATGA 59.584 40.000 8.95 13.70 0.00 2.57
770 2708 8.438676 AAGTTAACTCAATGAGAATAATCGGG 57.561 34.615 18.20 0.00 33.32 5.14
907 2854 2.569853 TCGTTTATTCTTCCAGCTCCCA 59.430 45.455 0.00 0.00 0.00 4.37
981 2931 1.883544 CGGTGCCGTGTGTGTGTAA 60.884 57.895 1.93 0.00 34.35 2.41
990 2943 4.618927 GCCGTGTGTGTGTAATAAGTAGGA 60.619 45.833 0.00 0.00 0.00 2.94
1324 3283 2.975536 GGTTCGTGATCCCGACCA 59.024 61.111 0.00 0.00 36.42 4.02
1329 3288 0.467474 TCGTGATCCCGACCAGCTAT 60.467 55.000 0.00 0.00 30.63 2.97
1419 3378 4.559063 CTGGCCATCCCCTGCGAG 62.559 72.222 5.51 0.00 0.00 5.03
1570 3529 5.121380 AGCACAGGATGGATCATTTAACT 57.879 39.130 0.00 0.00 43.62 2.24
1601 3560 9.330063 GATGGATTCATCTGTAACAATGTTCTA 57.670 33.333 6.75 0.00 44.73 2.10
1629 3588 5.158101 TGTTCGTTTGCGTTTTATTCTCA 57.842 34.783 0.00 0.00 39.49 3.27
1630 3589 5.201910 TGTTCGTTTGCGTTTTATTCTCAG 58.798 37.500 0.00 0.00 39.49 3.35
1631 3590 5.006844 TGTTCGTTTGCGTTTTATTCTCAGA 59.993 36.000 0.00 0.00 39.49 3.27
1637 3599 5.283060 TGCGTTTTATTCTCAGAAGAAGC 57.717 39.130 0.00 0.00 44.53 3.86
1672 3634 1.506718 CTAGAGCCAGCGTCGTCAA 59.493 57.895 0.00 0.00 0.00 3.18
1774 3737 9.443283 GATCAAGAATTAAATTGATCCGTCAAG 57.557 33.333 20.00 0.00 46.75 3.02
1775 3738 8.335532 TCAAGAATTAAATTGATCCGTCAAGT 57.664 30.769 0.00 0.00 46.75 3.16
1790 3753 4.212636 CCGTCAAGTTAGTTTGGGTGTAAG 59.787 45.833 0.00 0.00 0.00 2.34
1796 3759 5.128205 AGTTAGTTTGGGTGTAAGTGGTTC 58.872 41.667 0.00 0.00 0.00 3.62
1804 3767 4.222145 TGGGTGTAAGTGGTTCTGATCTAC 59.778 45.833 0.00 0.00 0.00 2.59
1805 3768 4.466726 GGGTGTAAGTGGTTCTGATCTACT 59.533 45.833 0.00 0.00 0.00 2.57
1806 3769 5.655532 GGGTGTAAGTGGTTCTGATCTACTA 59.344 44.000 5.35 0.00 0.00 1.82
1807 3770 6.183360 GGGTGTAAGTGGTTCTGATCTACTAG 60.183 46.154 5.35 0.00 0.00 2.57
1809 3772 7.555554 GGTGTAAGTGGTTCTGATCTACTAGTA 59.444 40.741 1.89 1.89 0.00 1.82
1810 3773 8.397148 GTGTAAGTGGTTCTGATCTACTAGTAC 58.603 40.741 0.00 6.28 0.00 2.73
1814 3777 8.911918 AGTGGTTCTGATCTACTAGTACTATG 57.088 38.462 2.33 0.74 0.00 2.23
1815 3778 8.496088 AGTGGTTCTGATCTACTAGTACTATGT 58.504 37.037 2.33 6.64 0.00 2.29
1816 3779 9.122779 GTGGTTCTGATCTACTAGTACTATGTT 57.877 37.037 2.33 0.00 0.00 2.71
1835 3798 9.813446 ACTATGTTACTAGTAGTTTGTAATGGC 57.187 33.333 8.40 0.00 31.39 4.40
1840 3803 9.983804 GTTACTAGTAGTTTGTAATGGCAATTC 57.016 33.333 8.40 0.00 31.39 2.17
1849 3812 4.854173 TGTAATGGCAATTCTTCTGGCTA 58.146 39.130 0.00 0.00 39.94 3.93
1857 3820 1.583556 TTCTTCTGGCTATGCTGGGA 58.416 50.000 0.00 0.00 0.00 4.37
1862 3825 2.359230 GGCTATGCTGGGATCGCC 60.359 66.667 7.38 2.36 0.00 5.54
1863 3826 2.746359 GCTATGCTGGGATCGCCT 59.254 61.111 7.38 0.00 0.00 5.52
1933 3896 1.884464 GCATTCCGCTCGATCTGCA 60.884 57.895 8.03 0.00 37.77 4.41
1942 3905 0.319727 CTCGATCTGCAGCCTCCATC 60.320 60.000 9.47 5.53 0.00 3.51
1952 3915 3.004951 CCTCCATCTGCTGGGCTT 58.995 61.111 0.00 0.00 45.98 4.35
1953 3916 1.305623 CCTCCATCTGCTGGGCTTT 59.694 57.895 0.00 0.00 45.98 3.51
1954 3917 1.035932 CCTCCATCTGCTGGGCTTTG 61.036 60.000 0.00 0.00 45.98 2.77
1955 3918 0.034767 CTCCATCTGCTGGGCTTTGA 60.035 55.000 0.00 0.00 45.98 2.69
1956 3919 0.627451 TCCATCTGCTGGGCTTTGAT 59.373 50.000 0.00 0.00 45.98 2.57
1957 3920 0.744874 CCATCTGCTGGGCTTTGATG 59.255 55.000 0.00 0.00 41.82 3.07
1958 3921 0.744874 CATCTGCTGGGCTTTGATGG 59.255 55.000 0.00 0.00 32.67 3.51
1959 3922 1.041447 ATCTGCTGGGCTTTGATGGC 61.041 55.000 0.00 0.00 0.00 4.40
1960 3923 1.681327 CTGCTGGGCTTTGATGGCT 60.681 57.895 0.00 0.00 0.00 4.75
1961 3924 1.945354 CTGCTGGGCTTTGATGGCTG 61.945 60.000 0.00 0.00 0.00 4.85
1962 3925 1.980772 GCTGGGCTTTGATGGCTGT 60.981 57.895 0.00 0.00 0.00 4.40
1963 3926 0.680921 GCTGGGCTTTGATGGCTGTA 60.681 55.000 0.00 0.00 0.00 2.74
1964 3927 1.386533 CTGGGCTTTGATGGCTGTAG 58.613 55.000 0.00 0.00 0.00 2.74
1965 3928 0.698238 TGGGCTTTGATGGCTGTAGT 59.302 50.000 0.00 0.00 0.00 2.73
1966 3929 1.075374 TGGGCTTTGATGGCTGTAGTT 59.925 47.619 0.00 0.00 0.00 2.24
1967 3930 2.171003 GGGCTTTGATGGCTGTAGTTT 58.829 47.619 0.00 0.00 0.00 2.66
1968 3931 2.562738 GGGCTTTGATGGCTGTAGTTTT 59.437 45.455 0.00 0.00 0.00 2.43
1969 3932 3.367395 GGGCTTTGATGGCTGTAGTTTTC 60.367 47.826 0.00 0.00 0.00 2.29
1970 3933 3.507622 GGCTTTGATGGCTGTAGTTTTCT 59.492 43.478 0.00 0.00 0.00 2.52
1971 3934 4.479619 GCTTTGATGGCTGTAGTTTTCTG 58.520 43.478 0.00 0.00 0.00 3.02
1972 3935 4.479619 CTTTGATGGCTGTAGTTTTCTGC 58.520 43.478 0.00 0.00 0.00 4.26
1973 3936 2.436417 TGATGGCTGTAGTTTTCTGCC 58.564 47.619 6.83 6.83 45.68 4.85
2038 4001 0.248458 CGCCCGGTTCATTAACATGC 60.248 55.000 0.00 0.00 37.34 4.06
2043 4006 2.614057 CCGGTTCATTAACATGCCTCTC 59.386 50.000 0.00 0.00 37.34 3.20
2052 4015 0.390860 ACATGCCTCTCGCTATGACC 59.609 55.000 0.00 0.00 38.78 4.02
2077 4049 2.354821 GGGAAAACAGATACGCATGTCC 59.645 50.000 0.00 0.00 0.00 4.02
2083 4055 1.598130 GATACGCATGTCCCCTGCC 60.598 63.158 0.00 0.00 36.24 4.85
2173 4152 3.092301 GTCCCCCTCCTTCTGAATTTTG 58.908 50.000 0.00 0.00 0.00 2.44
2208 4187 1.129811 CGCATTTGGTTACTTCCCGTC 59.870 52.381 0.00 0.00 0.00 4.79
2209 4188 1.471287 GCATTTGGTTACTTCCCGTCC 59.529 52.381 0.00 0.00 0.00 4.79
2210 4189 1.735571 CATTTGGTTACTTCCCGTCCG 59.264 52.381 0.00 0.00 0.00 4.79
2211 4190 0.758123 TTTGGTTACTTCCCGTCCGT 59.242 50.000 0.00 0.00 0.00 4.69
2217 4196 1.039068 TACTTCCCGTCCGTTTGACA 58.961 50.000 0.00 0.00 44.71 3.58
2235 4214 3.053019 TGACATCTGATAAAATGCCCCCA 60.053 43.478 0.00 0.00 0.00 4.96
2236 4215 3.569491 ACATCTGATAAAATGCCCCCAG 58.431 45.455 0.00 0.00 0.00 4.45
2237 4216 3.052642 ACATCTGATAAAATGCCCCCAGT 60.053 43.478 0.00 0.00 0.00 4.00
2238 4217 3.756082 TCTGATAAAATGCCCCCAGTT 57.244 42.857 0.00 0.00 0.00 3.16
2239 4218 4.059773 TCTGATAAAATGCCCCCAGTTT 57.940 40.909 0.00 0.00 41.54 2.66
2240 4219 4.424842 TCTGATAAAATGCCCCCAGTTTT 58.575 39.130 0.00 0.00 39.63 2.43
2241 4220 4.466015 TCTGATAAAATGCCCCCAGTTTTC 59.534 41.667 0.00 0.00 39.63 2.29
2293 4272 0.322277 CTGCAGTGCCTCATCAGGTT 60.322 55.000 13.72 0.00 42.74 3.50
2303 4282 2.416747 CTCATCAGGTTGAGCGTTCAA 58.583 47.619 10.92 10.92 40.92 2.69
2321 4304 1.870055 AATTGCTGCCCAAGAGTGCG 61.870 55.000 0.00 0.00 36.76 5.34
2325 4308 2.046023 TGCCCAAGAGTGCGGATG 60.046 61.111 0.00 0.00 0.00 3.51
2349 4332 5.614887 GCTGAATCTTTGTTTGACTACCGTC 60.615 44.000 0.00 0.00 40.64 4.79
2366 4350 0.109342 GTCCGATCAGCCCATCCATT 59.891 55.000 0.00 0.00 0.00 3.16
2370 4354 1.242076 GATCAGCCCATCCATTTCGG 58.758 55.000 0.00 0.00 0.00 4.30
2408 4425 2.586648 TTTCAAAGCCCTCTCCCTTC 57.413 50.000 0.00 0.00 0.00 3.46
2417 4434 2.607750 TCTCCCTTCGGCTTGCCT 60.608 61.111 10.12 0.00 0.00 4.75
2460 4484 2.853914 GAACCAGAGCGCGTTCAC 59.146 61.111 24.99 6.99 38.58 3.18
2566 4590 2.358957 CTCAAGATTGACATTGCCCGA 58.641 47.619 0.00 0.00 32.90 5.14
2590 4614 2.740981 GTTCAACTCAGTCTCATGGCTG 59.259 50.000 0.00 0.00 0.00 4.85
2608 4632 6.560003 TGGCTGTTCCTTCTTCATATTCTA 57.440 37.500 0.00 0.00 35.26 2.10
2665 4689 0.106469 CTCCATCCTCCTCTCCACGA 60.106 60.000 0.00 0.00 0.00 4.35
2689 4713 7.139896 ACATCGACACATTTGCTTGTTAATA 57.860 32.000 0.00 0.00 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.279741 GGTGCTTGAATAGATGCGACA 58.720 47.619 0.00 0.00 0.00 4.35
1 2 1.258982 CGGTGCTTGAATAGATGCGAC 59.741 52.381 0.00 0.00 0.00 5.19
2 3 1.570813 CGGTGCTTGAATAGATGCGA 58.429 50.000 0.00 0.00 0.00 5.10
3 4 0.041839 GCGGTGCTTGAATAGATGCG 60.042 55.000 0.00 0.00 0.00 4.73
4 5 1.016627 TGCGGTGCTTGAATAGATGC 58.983 50.000 0.00 0.00 0.00 3.91
5 6 1.331756 GGTGCGGTGCTTGAATAGATG 59.668 52.381 0.00 0.00 0.00 2.90
6 7 1.210478 AGGTGCGGTGCTTGAATAGAT 59.790 47.619 0.00 0.00 0.00 1.98
7 8 0.613260 AGGTGCGGTGCTTGAATAGA 59.387 50.000 0.00 0.00 0.00 1.98
8 9 0.729116 CAGGTGCGGTGCTTGAATAG 59.271 55.000 0.00 0.00 0.00 1.73
9 10 1.305219 GCAGGTGCGGTGCTTGAATA 61.305 55.000 0.00 0.00 37.96 1.75
10 11 2.629656 GCAGGTGCGGTGCTTGAAT 61.630 57.895 0.00 0.00 37.96 2.57
11 12 3.286751 GCAGGTGCGGTGCTTGAA 61.287 61.111 0.00 0.00 37.96 2.69
17 18 3.925630 AATCCTGGCAGGTGCGGTG 62.926 63.158 31.60 5.87 43.26 4.94
18 19 3.650950 AATCCTGGCAGGTGCGGT 61.651 61.111 31.60 11.74 43.26 5.68
19 20 3.136123 CAATCCTGGCAGGTGCGG 61.136 66.667 31.60 16.45 43.26 5.69
20 21 1.243342 TTTCAATCCTGGCAGGTGCG 61.243 55.000 31.60 20.29 43.26 5.34
21 22 0.968405 TTTTCAATCCTGGCAGGTGC 59.032 50.000 31.60 0.00 36.53 5.01
22 23 2.629617 AGTTTTTCAATCCTGGCAGGTG 59.370 45.455 31.60 23.43 36.53 4.00
23 24 2.893489 GAGTTTTTCAATCCTGGCAGGT 59.107 45.455 31.60 17.12 36.53 4.00
24 25 3.160269 AGAGTTTTTCAATCCTGGCAGG 58.840 45.455 28.01 28.01 36.46 4.85
25 26 5.335976 GGTTAGAGTTTTTCAATCCTGGCAG 60.336 44.000 7.75 7.75 0.00 4.85
26 27 4.522789 GGTTAGAGTTTTTCAATCCTGGCA 59.477 41.667 0.00 0.00 0.00 4.92
27 28 4.767409 AGGTTAGAGTTTTTCAATCCTGGC 59.233 41.667 0.00 0.00 0.00 4.85
28 29 7.996098 TTAGGTTAGAGTTTTTCAATCCTGG 57.004 36.000 0.00 0.00 0.00 4.45
29 30 9.067986 AGTTTAGGTTAGAGTTTTTCAATCCTG 57.932 33.333 0.00 0.00 0.00 3.86
38 39 9.993454 CTGGTTAGTAGTTTAGGTTAGAGTTTT 57.007 33.333 0.00 0.00 0.00 2.43
39 40 8.591940 CCTGGTTAGTAGTTTAGGTTAGAGTTT 58.408 37.037 0.00 0.00 0.00 2.66
40 41 7.310299 GCCTGGTTAGTAGTTTAGGTTAGAGTT 60.310 40.741 0.00 0.00 0.00 3.01
41 42 6.154192 GCCTGGTTAGTAGTTTAGGTTAGAGT 59.846 42.308 0.00 0.00 0.00 3.24
42 43 6.154021 TGCCTGGTTAGTAGTTTAGGTTAGAG 59.846 42.308 0.00 0.00 0.00 2.43
43 44 6.018469 TGCCTGGTTAGTAGTTTAGGTTAGA 58.982 40.000 0.00 0.00 0.00 2.10
44 45 6.104665 GTGCCTGGTTAGTAGTTTAGGTTAG 58.895 44.000 0.00 0.00 0.00 2.34
45 46 5.046376 GGTGCCTGGTTAGTAGTTTAGGTTA 60.046 44.000 0.00 0.00 0.00 2.85
46 47 4.263199 GGTGCCTGGTTAGTAGTTTAGGTT 60.263 45.833 0.00 0.00 0.00 3.50
47 48 3.262660 GGTGCCTGGTTAGTAGTTTAGGT 59.737 47.826 0.00 0.00 0.00 3.08
48 49 3.677976 CGGTGCCTGGTTAGTAGTTTAGG 60.678 52.174 0.00 0.00 0.00 2.69
49 50 3.518590 CGGTGCCTGGTTAGTAGTTTAG 58.481 50.000 0.00 0.00 0.00 1.85
50 51 2.234414 CCGGTGCCTGGTTAGTAGTTTA 59.766 50.000 0.00 0.00 0.00 2.01
51 52 1.002773 CCGGTGCCTGGTTAGTAGTTT 59.997 52.381 0.00 0.00 0.00 2.66
52 53 0.611714 CCGGTGCCTGGTTAGTAGTT 59.388 55.000 0.00 0.00 0.00 2.24
53 54 1.262640 CCCGGTGCCTGGTTAGTAGT 61.263 60.000 0.00 0.00 0.00 2.73
54 55 0.974010 TCCCGGTGCCTGGTTAGTAG 60.974 60.000 0.00 0.00 0.00 2.57
55 56 0.325860 ATCCCGGTGCCTGGTTAGTA 60.326 55.000 0.00 0.00 0.00 1.82
56 57 1.615424 ATCCCGGTGCCTGGTTAGT 60.615 57.895 0.00 0.00 0.00 2.24
57 58 1.146263 GATCCCGGTGCCTGGTTAG 59.854 63.158 0.00 0.00 0.00 2.34
58 59 2.372074 GGATCCCGGTGCCTGGTTA 61.372 63.158 0.00 0.00 0.00 2.85
59 60 3.728373 GGATCCCGGTGCCTGGTT 61.728 66.667 0.00 0.00 0.00 3.67
71 72 4.843331 TGGCAGGGAGGGGGATCC 62.843 72.222 1.92 1.92 38.76 3.36
72 73 2.451294 ATGGCAGGGAGGGGGATC 60.451 66.667 0.00 0.00 0.00 3.36
73 74 2.451294 GATGGCAGGGAGGGGGAT 60.451 66.667 0.00 0.00 0.00 3.85
76 77 3.866582 GTCGATGGCAGGGAGGGG 61.867 72.222 0.00 0.00 0.00 4.79
77 78 3.866582 GGTCGATGGCAGGGAGGG 61.867 72.222 0.00 0.00 0.00 4.30
78 79 4.227134 CGGTCGATGGCAGGGAGG 62.227 72.222 0.00 0.00 0.00 4.30
79 80 4.899239 GCGGTCGATGGCAGGGAG 62.899 72.222 5.86 0.00 0.00 4.30
98 99 4.741239 TCCTCTCCCTGCCACCCC 62.741 72.222 0.00 0.00 0.00 4.95
99 100 3.086600 CTCCTCTCCCTGCCACCC 61.087 72.222 0.00 0.00 0.00 4.61
100 101 2.039624 TCTCCTCTCCCTGCCACC 59.960 66.667 0.00 0.00 0.00 4.61
101 102 2.063378 CCTCTCCTCTCCCTGCCAC 61.063 68.421 0.00 0.00 0.00 5.01
102 103 1.815384 TTCCTCTCCTCTCCCTGCCA 61.815 60.000 0.00 0.00 0.00 4.92
103 104 0.618968 TTTCCTCTCCTCTCCCTGCC 60.619 60.000 0.00 0.00 0.00 4.85
104 105 1.280457 TTTTCCTCTCCTCTCCCTGC 58.720 55.000 0.00 0.00 0.00 4.85
105 106 2.437651 GGATTTTCCTCTCCTCTCCCTG 59.562 54.545 0.00 0.00 32.53 4.45
106 107 2.046447 TGGATTTTCCTCTCCTCTCCCT 59.954 50.000 0.00 0.00 37.46 4.20
107 108 2.171659 GTGGATTTTCCTCTCCTCTCCC 59.828 54.545 0.00 0.00 37.46 4.30
108 109 2.159028 CGTGGATTTTCCTCTCCTCTCC 60.159 54.545 0.00 0.00 37.46 3.71
109 110 2.159028 CCGTGGATTTTCCTCTCCTCTC 60.159 54.545 0.00 0.00 37.46 3.20
110 111 1.834263 CCGTGGATTTTCCTCTCCTCT 59.166 52.381 0.00 0.00 37.46 3.69
111 112 1.831736 TCCGTGGATTTTCCTCTCCTC 59.168 52.381 0.00 0.00 37.46 3.71
112 113 1.555533 GTCCGTGGATTTTCCTCTCCT 59.444 52.381 0.00 0.00 37.46 3.69
113 114 1.555533 AGTCCGTGGATTTTCCTCTCC 59.444 52.381 0.00 0.00 37.46 3.71
114 115 2.233922 TGAGTCCGTGGATTTTCCTCTC 59.766 50.000 0.00 0.00 37.46 3.20
115 116 2.028020 GTGAGTCCGTGGATTTTCCTCT 60.028 50.000 0.00 0.00 37.46 3.69
116 117 2.347731 GTGAGTCCGTGGATTTTCCTC 58.652 52.381 0.00 0.00 37.46 3.71
117 118 1.003233 GGTGAGTCCGTGGATTTTCCT 59.997 52.381 0.00 0.00 37.46 3.36
118 119 1.450025 GGTGAGTCCGTGGATTTTCC 58.550 55.000 0.00 0.00 36.96 3.13
129 130 0.804989 CAGATTTTGCCGGTGAGTCC 59.195 55.000 1.90 0.00 0.00 3.85
130 131 0.804989 CCAGATTTTGCCGGTGAGTC 59.195 55.000 1.90 0.00 0.00 3.36
131 132 0.400213 TCCAGATTTTGCCGGTGAGT 59.600 50.000 1.90 0.00 0.00 3.41
132 133 1.089920 CTCCAGATTTTGCCGGTGAG 58.910 55.000 1.90 0.00 0.00 3.51
133 134 0.322456 CCTCCAGATTTTGCCGGTGA 60.322 55.000 1.90 0.00 0.00 4.02
134 135 1.315257 CCCTCCAGATTTTGCCGGTG 61.315 60.000 1.90 0.00 0.00 4.94
135 136 1.000896 CCCTCCAGATTTTGCCGGT 60.001 57.895 1.90 0.00 0.00 5.28
136 137 1.754234 CCCCTCCAGATTTTGCCGG 60.754 63.158 0.00 0.00 0.00 6.13
137 138 0.749454 CTCCCCTCCAGATTTTGCCG 60.749 60.000 0.00 0.00 0.00 5.69
138 139 0.625849 TCTCCCCTCCAGATTTTGCC 59.374 55.000 0.00 0.00 0.00 4.52
139 140 1.283321 ACTCTCCCCTCCAGATTTTGC 59.717 52.381 0.00 0.00 0.00 3.68
140 141 3.728385 AACTCTCCCCTCCAGATTTTG 57.272 47.619 0.00 0.00 0.00 2.44
141 142 3.245407 CCAAACTCTCCCCTCCAGATTTT 60.245 47.826 0.00 0.00 0.00 1.82
142 143 2.310052 CCAAACTCTCCCCTCCAGATTT 59.690 50.000 0.00 0.00 0.00 2.17
143 144 1.918957 CCAAACTCTCCCCTCCAGATT 59.081 52.381 0.00 0.00 0.00 2.40
144 145 1.589414 CCAAACTCTCCCCTCCAGAT 58.411 55.000 0.00 0.00 0.00 2.90
145 146 1.201429 GCCAAACTCTCCCCTCCAGA 61.201 60.000 0.00 0.00 0.00 3.86
146 147 1.301293 GCCAAACTCTCCCCTCCAG 59.699 63.158 0.00 0.00 0.00 3.86
147 148 2.231380 GGCCAAACTCTCCCCTCCA 61.231 63.158 0.00 0.00 0.00 3.86
148 149 0.620700 TAGGCCAAACTCTCCCCTCC 60.621 60.000 5.01 0.00 0.00 4.30
149 150 0.833949 CTAGGCCAAACTCTCCCCTC 59.166 60.000 5.01 0.00 0.00 4.30
150 151 1.275421 GCTAGGCCAAACTCTCCCCT 61.275 60.000 5.01 0.00 0.00 4.79
151 152 1.224870 GCTAGGCCAAACTCTCCCC 59.775 63.158 5.01 0.00 0.00 4.81
152 153 4.966123 GCTAGGCCAAACTCTCCC 57.034 61.111 5.01 0.00 0.00 4.30
177 178 1.229853 TCAACTCCTTCCCTCCCCC 60.230 63.158 0.00 0.00 0.00 5.40
178 179 1.275421 CCTCAACTCCTTCCCTCCCC 61.275 65.000 0.00 0.00 0.00 4.81
179 180 0.252742 TCCTCAACTCCTTCCCTCCC 60.253 60.000 0.00 0.00 0.00 4.30
180 181 1.199615 CTCCTCAACTCCTTCCCTCC 58.800 60.000 0.00 0.00 0.00 4.30
181 182 1.199615 CCTCCTCAACTCCTTCCCTC 58.800 60.000 0.00 0.00 0.00 4.30
182 183 0.793617 TCCTCCTCAACTCCTTCCCT 59.206 55.000 0.00 0.00 0.00 4.20
183 184 1.199615 CTCCTCCTCAACTCCTTCCC 58.800 60.000 0.00 0.00 0.00 3.97
184 185 1.199615 CCTCCTCCTCAACTCCTTCC 58.800 60.000 0.00 0.00 0.00 3.46
185 186 2.239681 TCCTCCTCCTCAACTCCTTC 57.760 55.000 0.00 0.00 0.00 3.46
186 187 2.723530 TTCCTCCTCCTCAACTCCTT 57.276 50.000 0.00 0.00 0.00 3.36
187 188 2.959421 ATTCCTCCTCCTCAACTCCT 57.041 50.000 0.00 0.00 0.00 3.69
188 189 4.041075 GGATTATTCCTCCTCCTCAACTCC 59.959 50.000 0.00 0.00 39.14 3.85
189 190 4.656112 TGGATTATTCCTCCTCCTCAACTC 59.344 45.833 5.31 0.00 43.07 3.01
190 191 4.635473 TGGATTATTCCTCCTCCTCAACT 58.365 43.478 5.31 0.00 43.07 3.16
191 192 5.104318 AGTTGGATTATTCCTCCTCCTCAAC 60.104 44.000 5.31 0.00 43.07 3.18
192 193 5.039645 AGTTGGATTATTCCTCCTCCTCAA 58.960 41.667 5.31 0.00 43.07 3.02
193 194 4.635473 AGTTGGATTATTCCTCCTCCTCA 58.365 43.478 5.31 0.00 43.07 3.86
194 195 5.638530 AAGTTGGATTATTCCTCCTCCTC 57.361 43.478 5.31 0.00 43.07 3.71
195 196 5.760131 CAAAGTTGGATTATTCCTCCTCCT 58.240 41.667 5.31 0.00 43.07 3.69
211 212 6.588756 TGAATAGCGAAGTAGTACCAAAGTTG 59.411 38.462 0.00 0.00 0.00 3.16
212 213 6.694447 TGAATAGCGAAGTAGTACCAAAGTT 58.306 36.000 0.00 0.00 0.00 2.66
213 214 6.276832 TGAATAGCGAAGTAGTACCAAAGT 57.723 37.500 0.00 0.00 0.00 2.66
214 215 8.136165 AGTATGAATAGCGAAGTAGTACCAAAG 58.864 37.037 0.00 0.00 0.00 2.77
215 216 8.004087 AGTATGAATAGCGAAGTAGTACCAAA 57.996 34.615 0.00 0.00 0.00 3.28
216 217 7.283807 TGAGTATGAATAGCGAAGTAGTACCAA 59.716 37.037 0.00 0.00 0.00 3.67
217 218 6.769341 TGAGTATGAATAGCGAAGTAGTACCA 59.231 38.462 0.00 0.00 0.00 3.25
218 219 7.199541 TGAGTATGAATAGCGAAGTAGTACC 57.800 40.000 0.00 0.00 0.00 3.34
219 220 6.797995 GCTGAGTATGAATAGCGAAGTAGTAC 59.202 42.308 0.00 0.00 0.00 2.73
220 221 6.072618 GGCTGAGTATGAATAGCGAAGTAGTA 60.073 42.308 0.00 0.00 37.05 1.82
221 222 5.278561 GGCTGAGTATGAATAGCGAAGTAGT 60.279 44.000 0.00 0.00 37.05 2.73
222 223 5.157781 GGCTGAGTATGAATAGCGAAGTAG 58.842 45.833 0.00 0.00 37.05 2.57
223 224 4.320275 CGGCTGAGTATGAATAGCGAAGTA 60.320 45.833 0.00 0.00 37.05 2.24
224 225 3.551046 CGGCTGAGTATGAATAGCGAAGT 60.551 47.826 0.00 0.00 37.05 3.01
225 226 2.983136 CGGCTGAGTATGAATAGCGAAG 59.017 50.000 0.00 0.00 37.05 3.79
226 227 2.288213 CCGGCTGAGTATGAATAGCGAA 60.288 50.000 0.00 0.00 37.05 4.70
227 228 1.269723 CCGGCTGAGTATGAATAGCGA 59.730 52.381 0.00 0.00 37.05 4.93
228 229 1.702886 CCGGCTGAGTATGAATAGCG 58.297 55.000 0.00 0.00 37.05 4.26
229 230 1.270305 TGCCGGCTGAGTATGAATAGC 60.270 52.381 29.70 0.00 35.49 2.97
230 231 2.820059 TGCCGGCTGAGTATGAATAG 57.180 50.000 29.70 0.00 0.00 1.73
231 232 3.202906 GTTTGCCGGCTGAGTATGAATA 58.797 45.455 29.70 0.00 0.00 1.75
232 233 2.017049 GTTTGCCGGCTGAGTATGAAT 58.983 47.619 29.70 0.00 0.00 2.57
233 234 1.448985 GTTTGCCGGCTGAGTATGAA 58.551 50.000 29.70 7.86 0.00 2.57
234 235 0.392461 GGTTTGCCGGCTGAGTATGA 60.392 55.000 29.70 0.07 0.00 2.15
235 236 0.676466 TGGTTTGCCGGCTGAGTATG 60.676 55.000 29.70 0.00 37.67 2.39
236 237 0.037590 TTGGTTTGCCGGCTGAGTAT 59.962 50.000 29.70 0.00 37.67 2.12
237 238 0.037590 ATTGGTTTGCCGGCTGAGTA 59.962 50.000 29.70 2.88 37.67 2.59
238 239 1.228552 ATTGGTTTGCCGGCTGAGT 60.229 52.632 29.70 4.12 37.67 3.41
239 240 1.213537 CATTGGTTTGCCGGCTGAG 59.786 57.895 29.70 4.92 37.67 3.35
240 241 2.929903 GCATTGGTTTGCCGGCTGA 61.930 57.895 29.70 13.94 36.60 4.26
241 242 2.432972 GCATTGGTTTGCCGGCTG 60.433 61.111 29.70 16.75 36.60 4.85
242 243 2.438951 CTTGCATTGGTTTGCCGGCT 62.439 55.000 29.70 1.01 42.06 5.52
243 244 2.028733 CTTGCATTGGTTTGCCGGC 61.029 57.895 22.73 22.73 42.06 6.13
244 245 0.249826 AACTTGCATTGGTTTGCCGG 60.250 50.000 0.00 0.00 42.06 6.13
245 246 1.580815 AAACTTGCATTGGTTTGCCG 58.419 45.000 10.66 0.00 42.06 5.69
270 271 9.850628 CTGAGAAATAAAATCTTGATGCTTTCA 57.149 29.630 0.00 0.00 0.00 2.69
285 286 9.884636 TGACCTTTCGATTATCTGAGAAATAAA 57.115 29.630 0.00 0.00 32.97 1.40
288 289 8.970859 AATGACCTTTCGATTATCTGAGAAAT 57.029 30.769 0.00 0.00 32.97 2.17
289 290 8.792830 AAATGACCTTTCGATTATCTGAGAAA 57.207 30.769 0.00 0.00 0.00 2.52
295 296 9.726438 CCCTTATAAATGACCTTTCGATTATCT 57.274 33.333 0.00 0.00 0.00 1.98
296 297 9.720769 TCCCTTATAAATGACCTTTCGATTATC 57.279 33.333 0.00 0.00 0.00 1.75
299 300 8.996651 ATTCCCTTATAAATGACCTTTCGATT 57.003 30.769 0.00 0.00 0.00 3.34
300 301 9.726438 CTATTCCCTTATAAATGACCTTTCGAT 57.274 33.333 0.00 0.00 0.00 3.59
301 302 8.154856 CCTATTCCCTTATAAATGACCTTTCGA 58.845 37.037 0.00 0.00 0.00 3.71
302 303 8.154856 TCCTATTCCCTTATAAATGACCTTTCG 58.845 37.037 0.00 0.00 0.00 3.46
303 304 9.862149 TTCCTATTCCCTTATAAATGACCTTTC 57.138 33.333 0.00 0.00 0.00 2.62
315 316 9.828691 CCCTGATTTTATTTCCTATTCCCTTAT 57.171 33.333 0.00 0.00 0.00 1.73
316 317 9.020644 TCCCTGATTTTATTTCCTATTCCCTTA 57.979 33.333 0.00 0.00 0.00 2.69
317 318 7.893482 TCCCTGATTTTATTTCCTATTCCCTT 58.107 34.615 0.00 0.00 0.00 3.95
318 319 7.480222 TCCCTGATTTTATTTCCTATTCCCT 57.520 36.000 0.00 0.00 0.00 4.20
319 320 7.255486 CGTTCCCTGATTTTATTTCCTATTCCC 60.255 40.741 0.00 0.00 0.00 3.97
320 321 7.284716 ACGTTCCCTGATTTTATTTCCTATTCC 59.715 37.037 0.00 0.00 0.00 3.01
321 322 8.221965 ACGTTCCCTGATTTTATTTCCTATTC 57.778 34.615 0.00 0.00 0.00 1.75
322 323 9.338622 CTACGTTCCCTGATTTTATTTCCTATT 57.661 33.333 0.00 0.00 0.00 1.73
323 324 8.711170 TCTACGTTCCCTGATTTTATTTCCTAT 58.289 33.333 0.00 0.00 0.00 2.57
324 325 8.081517 TCTACGTTCCCTGATTTTATTTCCTA 57.918 34.615 0.00 0.00 0.00 2.94
325 326 6.954232 TCTACGTTCCCTGATTTTATTTCCT 58.046 36.000 0.00 0.00 0.00 3.36
326 327 6.822170 ACTCTACGTTCCCTGATTTTATTTCC 59.178 38.462 0.00 0.00 0.00 3.13
327 328 7.011202 GGACTCTACGTTCCCTGATTTTATTTC 59.989 40.741 0.00 0.00 0.00 2.17
328 329 6.822170 GGACTCTACGTTCCCTGATTTTATTT 59.178 38.462 0.00 0.00 0.00 1.40
329 330 6.346896 GGACTCTACGTTCCCTGATTTTATT 58.653 40.000 0.00 0.00 0.00 1.40
330 331 5.163332 GGGACTCTACGTTCCCTGATTTTAT 60.163 44.000 14.69 0.00 34.94 1.40
331 332 4.161001 GGGACTCTACGTTCCCTGATTTTA 59.839 45.833 14.69 0.00 34.94 1.52
332 333 3.055312 GGGACTCTACGTTCCCTGATTTT 60.055 47.826 14.69 0.00 34.94 1.82
333 334 2.500504 GGGACTCTACGTTCCCTGATTT 59.499 50.000 14.69 0.00 34.94 2.17
334 335 2.108970 GGGACTCTACGTTCCCTGATT 58.891 52.381 14.69 0.00 34.94 2.57
335 336 1.006758 TGGGACTCTACGTTCCCTGAT 59.993 52.381 20.96 0.00 41.01 2.90
336 337 0.406750 TGGGACTCTACGTTCCCTGA 59.593 55.000 20.96 2.28 41.01 3.86
337 338 1.263356 TTGGGACTCTACGTTCCCTG 58.737 55.000 20.96 0.00 41.01 4.45
338 339 2.019807 TTTGGGACTCTACGTTCCCT 57.980 50.000 20.96 0.00 41.01 4.20
339 340 2.845363 TTTTGGGACTCTACGTTCCC 57.155 50.000 15.03 15.03 41.01 3.97
340 341 4.320870 TGAATTTTGGGACTCTACGTTCC 58.679 43.478 0.00 0.00 42.19 3.62
341 342 5.235516 TCTGAATTTTGGGACTCTACGTTC 58.764 41.667 0.00 0.00 0.00 3.95
342 343 5.223449 TCTGAATTTTGGGACTCTACGTT 57.777 39.130 0.00 0.00 0.00 3.99
343 344 4.884668 TCTGAATTTTGGGACTCTACGT 57.115 40.909 0.00 0.00 0.00 3.57
344 345 5.238583 ACTTCTGAATTTTGGGACTCTACG 58.761 41.667 0.00 0.00 0.00 3.51
345 346 8.617290 TTAACTTCTGAATTTTGGGACTCTAC 57.383 34.615 0.00 0.00 0.00 2.59
346 347 9.807921 AATTAACTTCTGAATTTTGGGACTCTA 57.192 29.630 0.00 0.00 0.00 2.43
347 348 8.712228 AATTAACTTCTGAATTTTGGGACTCT 57.288 30.769 0.00 0.00 0.00 3.24
348 349 9.196552 CAAATTAACTTCTGAATTTTGGGACTC 57.803 33.333 0.00 0.00 33.92 3.36
349 350 7.657354 GCAAATTAACTTCTGAATTTTGGGACT 59.343 33.333 0.00 0.00 33.92 3.85
350 351 7.095229 GGCAAATTAACTTCTGAATTTTGGGAC 60.095 37.037 0.00 0.00 33.92 4.46
351 352 6.934083 GGCAAATTAACTTCTGAATTTTGGGA 59.066 34.615 0.00 0.00 33.92 4.37
352 353 6.149308 GGGCAAATTAACTTCTGAATTTTGGG 59.851 38.462 0.00 0.00 33.92 4.12
353 354 6.936335 AGGGCAAATTAACTTCTGAATTTTGG 59.064 34.615 0.00 0.00 33.92 3.28
354 355 7.967890 AGGGCAAATTAACTTCTGAATTTTG 57.032 32.000 0.00 3.07 33.92 2.44
355 356 8.870116 AGTAGGGCAAATTAACTTCTGAATTTT 58.130 29.630 0.00 0.00 33.92 1.82
356 357 8.422577 AGTAGGGCAAATTAACTTCTGAATTT 57.577 30.769 0.00 0.00 36.02 1.82
357 358 8.306761 CAAGTAGGGCAAATTAACTTCTGAATT 58.693 33.333 0.00 0.00 0.00 2.17
358 359 7.577616 GCAAGTAGGGCAAATTAACTTCTGAAT 60.578 37.037 0.00 0.00 0.00 2.57
359 360 6.294508 GCAAGTAGGGCAAATTAACTTCTGAA 60.295 38.462 0.00 0.00 0.00 3.02
360 361 5.183140 GCAAGTAGGGCAAATTAACTTCTGA 59.817 40.000 0.00 0.00 0.00 3.27
361 362 5.183904 AGCAAGTAGGGCAAATTAACTTCTG 59.816 40.000 0.00 0.00 0.00 3.02
362 363 5.183904 CAGCAAGTAGGGCAAATTAACTTCT 59.816 40.000 0.00 0.00 0.00 2.85
363 364 5.402398 CAGCAAGTAGGGCAAATTAACTTC 58.598 41.667 0.00 0.00 0.00 3.01
382 383 4.687976 TCCATCTATCTATTAGGCCAGCA 58.312 43.478 5.01 0.00 0.00 4.41
395 396 4.442706 ACGGTGTGTTTGATCCATCTATC 58.557 43.478 0.00 0.00 0.00 2.08
396 397 4.487714 ACGGTGTGTTTGATCCATCTAT 57.512 40.909 0.00 0.00 0.00 1.98
397 398 3.973206 ACGGTGTGTTTGATCCATCTA 57.027 42.857 0.00 0.00 0.00 1.98
398 399 2.859165 ACGGTGTGTTTGATCCATCT 57.141 45.000 0.00 0.00 0.00 2.90
419 420 0.570734 CGTACCGCGCAAGAATACAG 59.429 55.000 8.75 0.00 43.02 2.74
463 2346 1.878953 AGTCAACTGCCGGTTACTTG 58.121 50.000 1.90 0.00 36.23 3.16
466 2349 3.703286 AAAAAGTCAACTGCCGGTTAC 57.297 42.857 1.90 0.00 36.23 2.50
490 2379 4.728772 TCAGGCCTGAATTTCTGAAAGAA 58.271 39.130 33.41 4.80 43.69 2.52
558 2452 6.292061 CGCTACATACTCTTTTCTTCTGCATC 60.292 42.308 0.00 0.00 0.00 3.91
717 2620 0.394762 CCATTAGGCCAGCTTGCTCA 60.395 55.000 5.01 0.00 0.00 4.26
749 2652 7.661437 CCATTCCCGATTATTCTCATTGAGTTA 59.339 37.037 13.23 3.98 0.00 2.24
753 2656 6.186420 TCCATTCCCGATTATTCTCATTGA 57.814 37.500 0.00 0.00 0.00 2.57
756 2659 7.025520 AGATTCCATTCCCGATTATTCTCAT 57.974 36.000 0.00 0.00 0.00 2.90
757 2660 6.439636 AGATTCCATTCCCGATTATTCTCA 57.560 37.500 0.00 0.00 0.00 3.27
759 2662 9.813826 ATAAAAGATTCCATTCCCGATTATTCT 57.186 29.630 0.00 0.00 0.00 2.40
907 2854 0.465824 GCTGAGAATGGATGCTGGCT 60.466 55.000 0.00 0.00 0.00 4.75
981 2931 4.037208 CCCATCACGTACGTTCCTACTTAT 59.963 45.833 20.23 0.00 0.00 1.73
990 2943 1.444895 GTCGCCCATCACGTACGTT 60.445 57.895 20.23 1.62 0.00 3.99
1272 3231 1.444895 CACGTACACCGGGCAGTAC 60.445 63.158 18.59 18.59 42.24 2.73
1344 3303 2.364317 TCCAGGAGGAGCCGGAAG 60.364 66.667 5.05 0.00 43.43 3.46
1419 3378 0.606604 TGTACTTGAAGGCCTCGGTC 59.393 55.000 5.23 0.00 0.00 4.79
1594 3553 7.302524 ACGCAAACGAACATAATTTAGAACAT 58.697 30.769 0.00 0.00 43.93 2.71
1601 3560 9.187455 AGAATAAAACGCAAACGAACATAATTT 57.813 25.926 0.00 0.00 43.93 1.82
1626 3585 1.074752 GCAGGTTCGCTTCTTCTGAG 58.925 55.000 0.00 0.00 0.00 3.35
1629 3588 4.268687 CGCAGGTTCGCTTCTTCT 57.731 55.556 0.00 0.00 0.00 2.85
1637 3599 4.374702 GCACACTGCGCAGGTTCG 62.375 66.667 38.27 25.38 31.71 3.95
1672 3634 6.561614 ACACTATCTACGAAACATGACGAAT 58.438 36.000 15.38 9.61 0.00 3.34
1727 3690 9.542462 TTGATCGTATATTTAGGTCTTTCCTTG 57.458 33.333 0.00 0.00 45.67 3.61
1774 3737 5.008316 CAGAACCACTTACACCCAAACTAAC 59.992 44.000 0.00 0.00 0.00 2.34
1775 3738 5.104444 TCAGAACCACTTACACCCAAACTAA 60.104 40.000 0.00 0.00 0.00 2.24
1790 3753 8.680039 ACATAGTACTAGTAGATCAGAACCAC 57.320 38.462 8.85 0.00 0.00 4.16
1809 3772 9.813446 GCCATTACAAACTACTAGTAACATAGT 57.187 33.333 3.76 0.00 39.35 2.12
1810 3773 9.811995 TGCCATTACAAACTACTAGTAACATAG 57.188 33.333 3.76 0.00 31.30 2.23
1813 3776 9.509956 AATTGCCATTACAAACTACTAGTAACA 57.490 29.630 3.76 0.00 32.27 2.41
1814 3777 9.983804 GAATTGCCATTACAAACTACTAGTAAC 57.016 33.333 3.76 0.00 32.27 2.50
1815 3778 9.953565 AGAATTGCCATTACAAACTACTAGTAA 57.046 29.630 3.76 0.00 32.27 2.24
1816 3779 9.953565 AAGAATTGCCATTACAAACTACTAGTA 57.046 29.630 1.89 1.89 32.27 1.82
1817 3780 8.863872 AAGAATTGCCATTACAAACTACTAGT 57.136 30.769 0.00 0.00 32.27 2.57
1818 3781 9.167311 AGAAGAATTGCCATTACAAACTACTAG 57.833 33.333 0.00 0.00 32.27 2.57
1819 3782 8.946085 CAGAAGAATTGCCATTACAAACTACTA 58.054 33.333 0.00 0.00 32.27 1.82
1820 3783 7.094205 CCAGAAGAATTGCCATTACAAACTACT 60.094 37.037 0.00 0.00 32.27 2.57
1821 3784 7.029563 CCAGAAGAATTGCCATTACAAACTAC 58.970 38.462 0.00 0.00 32.27 2.73
1822 3785 6.350110 GCCAGAAGAATTGCCATTACAAACTA 60.350 38.462 0.00 0.00 32.27 2.24
1835 3798 2.621998 CCCAGCATAGCCAGAAGAATTG 59.378 50.000 0.00 0.00 0.00 2.32
1840 3803 1.607509 CGATCCCAGCATAGCCAGAAG 60.608 57.143 0.00 0.00 0.00 2.85
1849 3812 1.374190 GATCAGGCGATCCCAGCAT 59.626 57.895 7.74 0.00 42.03 3.79
1857 3820 0.817654 TGACGAACAGATCAGGCGAT 59.182 50.000 9.05 0.00 33.31 4.58
1898 3861 3.136750 CGCTCTAGCAGCCTCCAT 58.863 61.111 2.44 0.00 46.74 3.41
1899 3862 3.842923 GCGCTCTAGCAGCCTCCA 61.843 66.667 0.00 0.00 46.74 3.86
1920 3883 4.218578 AGGCTGCAGATCGAGCGG 62.219 66.667 20.43 15.19 41.29 5.52
1942 3905 1.681327 AGCCATCAAAGCCCAGCAG 60.681 57.895 0.00 0.00 0.00 4.24
1946 3909 0.698238 ACTACAGCCATCAAAGCCCA 59.302 50.000 0.00 0.00 0.00 5.36
1952 3915 2.819608 GGCAGAAAACTACAGCCATCAA 59.180 45.455 0.00 0.00 44.59 2.57
1953 3916 2.436417 GGCAGAAAACTACAGCCATCA 58.564 47.619 0.00 0.00 44.59 3.07
1954 3917 1.398390 CGGCAGAAAACTACAGCCATC 59.602 52.381 0.00 0.00 45.47 3.51
1955 3918 1.271379 ACGGCAGAAAACTACAGCCAT 60.271 47.619 0.00 0.00 45.47 4.40
1956 3919 0.107831 ACGGCAGAAAACTACAGCCA 59.892 50.000 0.00 0.00 45.47 4.75
1957 3920 1.069227 CAACGGCAGAAAACTACAGCC 60.069 52.381 0.00 0.00 41.86 4.85
1958 3921 1.069227 CCAACGGCAGAAAACTACAGC 60.069 52.381 0.00 0.00 0.00 4.40
1959 3922 2.969443 CCAACGGCAGAAAACTACAG 57.031 50.000 0.00 0.00 0.00 2.74
1972 3935 0.962356 ATGGAGAAGCTTGCCAACGG 60.962 55.000 18.55 0.00 34.95 4.44
1973 3936 0.169672 CATGGAGAAGCTTGCCAACG 59.830 55.000 18.55 10.94 34.95 4.10
1974 3937 1.068055 CACATGGAGAAGCTTGCCAAC 60.068 52.381 18.55 0.00 34.95 3.77
1982 3945 2.191128 ACCAGAACACATGGAGAAGC 57.809 50.000 0.00 0.00 40.51 3.86
2043 4006 0.458889 TTTTCCCGTCGGTCATAGCG 60.459 55.000 11.06 0.00 40.97 4.26
2052 4015 0.643820 GCGTATCTGTTTTCCCGTCG 59.356 55.000 0.00 0.00 0.00 5.12
2077 4049 3.374058 CGTTAAATAAGTGACAGGCAGGG 59.626 47.826 0.00 0.00 0.00 4.45
2083 4055 7.062605 ACGGTTGATACGTTAAATAAGTGACAG 59.937 37.037 0.00 0.00 42.70 3.51
2208 4187 5.036737 GGCATTTTATCAGATGTCAAACGG 58.963 41.667 0.00 0.00 0.00 4.44
2209 4188 5.036737 GGGCATTTTATCAGATGTCAAACG 58.963 41.667 0.00 0.00 29.63 3.60
2210 4189 5.351458 GGGGCATTTTATCAGATGTCAAAC 58.649 41.667 0.00 0.00 29.63 2.93
2211 4190 4.405358 GGGGGCATTTTATCAGATGTCAAA 59.595 41.667 0.00 0.00 29.63 2.69
2217 4196 3.979501 ACTGGGGGCATTTTATCAGAT 57.020 42.857 0.00 0.00 0.00 2.90
2235 4214 7.213678 TCTGTTCCAAAACAAAACTGAAAACT 58.786 30.769 0.00 0.00 44.53 2.66
2236 4215 7.414814 TCTGTTCCAAAACAAAACTGAAAAC 57.585 32.000 0.00 0.00 44.53 2.43
2237 4216 8.438676 TTTCTGTTCCAAAACAAAACTGAAAA 57.561 26.923 13.51 3.00 44.53 2.29
2238 4217 8.438676 TTTTCTGTTCCAAAACAAAACTGAAA 57.561 26.923 12.47 12.47 44.53 2.69
2239 4218 8.438676 TTTTTCTGTTCCAAAACAAAACTGAA 57.561 26.923 0.00 0.00 44.53 3.02
2240 4219 8.502387 CATTTTTCTGTTCCAAAACAAAACTGA 58.498 29.630 0.00 0.00 44.53 3.41
2241 4220 8.288913 ACATTTTTCTGTTCCAAAACAAAACTG 58.711 29.630 0.00 0.00 44.53 3.16
2282 4261 1.338105 TGAACGCTCAACCTGATGAGG 60.338 52.381 0.00 0.00 45.60 3.86
2283 4262 3.005554 ATTGAACGCTCAACCTGATGAG 58.994 45.455 2.84 0.46 44.28 2.90
2293 4272 1.580942 GGCAGCAATTGAACGCTCA 59.419 52.632 10.34 0.00 35.96 4.26
2303 4282 2.338015 CGCACTCTTGGGCAGCAAT 61.338 57.895 0.00 0.00 0.00 3.56
2321 4304 5.382618 AGTCAAACAAAGATTCAGCATCC 57.617 39.130 0.00 0.00 31.20 3.51
2325 4308 4.213482 ACGGTAGTCAAACAAAGATTCAGC 59.787 41.667 0.00 0.00 0.00 4.26
2349 4332 1.242076 GAAATGGATGGGCTGATCGG 58.758 55.000 0.00 0.00 0.00 4.18
2366 4350 3.027292 AAAAAGCTTCGCGCCGAA 58.973 50.000 0.00 8.19 43.75 4.30
2391 4375 1.983224 CGAAGGGAGAGGGCTTTGA 59.017 57.895 0.00 0.00 0.00 2.69
2417 4434 2.338620 CGTGTCACCAAGCCGAGA 59.661 61.111 0.00 0.00 0.00 4.04
2506 4530 1.291877 GGTTGTGAATGAGACGCGCT 61.292 55.000 5.73 3.91 0.00 5.92
2566 4590 2.611473 CCATGAGACTGAGTTGAACGCT 60.611 50.000 0.02 0.00 0.00 5.07
2590 4614 6.261158 GGTGGCTTAGAATATGAAGAAGGAAC 59.739 42.308 0.00 0.00 0.00 3.62
2665 4689 3.988379 AACAAGCAAATGTGTCGATGT 57.012 38.095 0.00 0.00 32.81 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.