Multiple sequence alignment - TraesCS5B01G212400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G212400 chr5B 100.000 2357 0 0 1 2357 383032274 383029918 0.000000e+00 4353
1 TraesCS5B01G212400 chr5D 87.500 1520 85 45 601 2053 330073798 330072317 0.000000e+00 1657
2 TraesCS5B01G212400 chr5D 89.450 436 25 11 62 485 330074406 330073980 4.460000e-147 531
3 TraesCS5B01G212400 chr5A 88.846 1291 70 21 201 1469 426746464 426747702 0.000000e+00 1519
4 TraesCS5B01G212400 chr5A 84.227 317 29 12 1747 2043 426747886 426748201 2.960000e-74 289
5 TraesCS5B01G212400 chr5A 88.393 224 13 5 1491 1713 426747668 426747879 8.360000e-65 257
6 TraesCS5B01G212400 chr5A 85.532 235 4 7 1 209 426746164 426746394 3.940000e-53 219


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G212400 chr5B 383029918 383032274 2356 True 4353 4353 100.0000 1 2357 1 chr5B.!!$R1 2356
1 TraesCS5B01G212400 chr5D 330072317 330074406 2089 True 1094 1657 88.4750 62 2053 2 chr5D.!!$R1 1991
2 TraesCS5B01G212400 chr5A 426746164 426748201 2037 False 571 1519 86.7495 1 2043 4 chr5A.!!$F1 2042

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
950 1165 0.031178 GGCCAGCCATTCTATTTGCG 59.969 55.0 3.12 0.0 35.81 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2178 2520 0.037232 GGGTAGGGCGTCATGCTATC 60.037 60.0 0.0 0.0 45.43 2.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
185 212 1.077501 CACGGCACAGGGATTGGAT 60.078 57.895 0.00 0.00 0.00 3.41
186 213 0.680921 CACGGCACAGGGATTGGATT 60.681 55.000 0.00 0.00 0.00 3.01
187 214 0.394352 ACGGCACAGGGATTGGATTC 60.394 55.000 0.00 0.00 0.00 2.52
188 215 1.103398 CGGCACAGGGATTGGATTCC 61.103 60.000 0.00 0.00 34.83 3.01
214 319 1.399714 CAGCTGGATGCATGATGGTT 58.600 50.000 2.46 0.00 45.94 3.67
241 346 4.082408 TGGTTAGTCTGGTGTCGTATCTTG 60.082 45.833 0.00 0.00 0.00 3.02
303 412 4.455124 GTCGAAAAGAAAACAGATCACCG 58.545 43.478 0.00 0.00 0.00 4.94
304 413 4.210537 GTCGAAAAGAAAACAGATCACCGA 59.789 41.667 0.00 0.00 0.00 4.69
305 414 4.210537 TCGAAAAGAAAACAGATCACCGAC 59.789 41.667 0.00 0.00 0.00 4.79
306 415 4.455124 GAAAAGAAAACAGATCACCGACG 58.545 43.478 0.00 0.00 0.00 5.12
307 416 1.429463 AGAAAACAGATCACCGACGC 58.571 50.000 0.00 0.00 0.00 5.19
308 417 0.093026 GAAAACAGATCACCGACGCG 59.907 55.000 3.53 3.53 0.00 6.01
309 418 1.897398 AAAACAGATCACCGACGCGC 61.897 55.000 5.73 0.00 0.00 6.86
310 419 3.567478 AACAGATCACCGACGCGCA 62.567 57.895 5.73 0.00 0.00 6.09
311 420 3.250323 CAGATCACCGACGCGCAG 61.250 66.667 5.73 2.42 0.00 5.18
312 421 3.440415 AGATCACCGACGCGCAGA 61.440 61.111 5.73 0.00 0.00 4.26
313 422 2.951745 GATCACCGACGCGCAGAG 60.952 66.667 5.73 0.00 0.00 3.35
315 424 3.971453 ATCACCGACGCGCAGAGTG 62.971 63.158 5.73 9.54 43.40 3.51
316 425 4.700365 CACCGACGCGCAGAGTGA 62.700 66.667 5.73 0.00 43.40 3.41
317 426 4.406173 ACCGACGCGCAGAGTGAG 62.406 66.667 5.73 0.00 43.40 3.51
377 506 2.031870 GAGGGTGGAATAATGTTGCCC 58.968 52.381 0.00 0.00 35.04 5.36
379 508 1.342975 GGGTGGAATAATGTTGCCCCT 60.343 52.381 0.00 0.00 0.00 4.79
434 563 2.964740 ACTACATGTGCACAGCTGTAG 58.035 47.619 36.57 36.57 41.59 2.74
435 564 2.300152 ACTACATGTGCACAGCTGTAGT 59.700 45.455 37.49 37.49 42.87 2.73
436 565 3.509967 ACTACATGTGCACAGCTGTAGTA 59.490 43.478 39.68 26.22 44.40 1.82
523 660 7.010460 GCAAAGCTCTTTCTTTTTAGCAGAAAA 59.990 33.333 0.00 0.00 39.28 2.29
616 815 3.573967 TGGCCCATGAAGAACTTTCTTTC 59.426 43.478 0.00 1.20 46.84 2.62
620 819 4.829492 CCCATGAAGAACTTTCTTTCAGGT 59.171 41.667 5.71 0.00 46.84 4.00
625 824 5.590259 TGAAGAACTTTCTTTCAGGTTCTGG 59.410 40.000 5.71 0.00 46.84 3.86
627 826 5.372373 AGAACTTTCTTTCAGGTTCTGGAG 58.628 41.667 6.42 0.00 44.19 3.86
630 829 4.410555 ACTTTCTTTCAGGTTCTGGAGACT 59.589 41.667 0.00 0.00 31.51 3.24
631 830 5.104318 ACTTTCTTTCAGGTTCTGGAGACTT 60.104 40.000 0.00 0.00 31.51 3.01
667 866 1.683629 CCGGCCCAAATAAAGCCTGTA 60.684 52.381 0.00 0.00 44.84 2.74
670 869 2.357777 GGCCCAAATAAAGCCTGTAGGA 60.358 50.000 1.17 0.00 43.62 2.94
671 870 2.952310 GCCCAAATAAAGCCTGTAGGAG 59.048 50.000 1.17 0.00 37.39 3.69
700 899 2.501602 GGCCTGGCCCAATATGCAC 61.502 63.158 27.77 0.00 44.06 4.57
749 950 1.628340 TCTGGAGCATCGGGAGAAAAA 59.372 47.619 0.00 0.00 45.37 1.94
759 960 1.176619 GGGAGAAAAACCGTGTGGGG 61.177 60.000 0.00 0.00 41.60 4.96
894 1101 4.986034 TGCTGATTCGAAACTAAGAAACGA 59.014 37.500 0.00 0.00 0.00 3.85
910 1117 2.372690 CGAAGGAGACAACCGCACG 61.373 63.158 0.00 0.00 34.73 5.34
916 1123 4.059459 GACAACCGCACGTCGCTG 62.059 66.667 8.07 4.62 39.08 5.18
925 1133 0.370273 GCACGTCGCTGAACCATAAG 59.630 55.000 0.00 0.00 37.77 1.73
950 1165 0.031178 GGCCAGCCATTCTATTTGCG 59.969 55.000 3.12 0.00 35.81 4.85
988 1203 3.207474 CGCAAGAACCTGAATTCCAAG 57.793 47.619 2.27 0.00 43.02 3.61
989 1204 2.554032 CGCAAGAACCTGAATTCCAAGT 59.446 45.455 2.27 0.00 43.02 3.16
990 1205 3.610114 CGCAAGAACCTGAATTCCAAGTG 60.610 47.826 2.27 0.00 43.02 3.16
1031 1246 0.471211 TTCCCTCCACTGTTCGTCCT 60.471 55.000 0.00 0.00 0.00 3.85
1051 1266 1.153409 CTGGTCCTGCTGCTGCTAG 60.153 63.158 17.00 11.64 40.48 3.42
1360 1575 3.308323 GGAACGGTCGTACTACTAGTCTG 59.692 52.174 0.00 0.00 0.00 3.51
1361 1576 3.601443 ACGGTCGTACTACTAGTCTGT 57.399 47.619 0.00 2.43 0.00 3.41
1363 1578 4.319177 ACGGTCGTACTACTAGTCTGTTT 58.681 43.478 0.00 0.00 0.00 2.83
1393 1612 3.916172 CCGAAGTTGACGAAAACGAGATA 59.084 43.478 0.00 0.00 35.13 1.98
1433 1652 2.613691 AGTAAAATCGGCTACGTGGTG 58.386 47.619 0.00 0.00 41.85 4.17
1434 1653 2.028748 AGTAAAATCGGCTACGTGGTGT 60.029 45.455 0.00 0.00 41.85 4.16
1435 1654 2.747396 AAAATCGGCTACGTGGTGTA 57.253 45.000 0.00 0.00 41.85 2.90
1436 1655 2.000429 AAATCGGCTACGTGGTGTAC 58.000 50.000 0.00 0.00 41.85 2.90
1437 1656 0.889994 AATCGGCTACGTGGTGTACA 59.110 50.000 0.00 0.00 41.85 2.90
1438 1657 0.889994 ATCGGCTACGTGGTGTACAA 59.110 50.000 0.00 0.00 41.85 2.41
1439 1658 0.672889 TCGGCTACGTGGTGTACAAA 59.327 50.000 0.00 0.00 41.85 2.83
1440 1659 1.065358 CGGCTACGTGGTGTACAAAG 58.935 55.000 0.00 0.00 34.81 2.77
1441 1660 1.603678 CGGCTACGTGGTGTACAAAGT 60.604 52.381 0.00 0.00 34.81 2.66
1442 1661 2.486918 GGCTACGTGGTGTACAAAGTT 58.513 47.619 0.00 0.00 0.00 2.66
1443 1662 2.477754 GGCTACGTGGTGTACAAAGTTC 59.522 50.000 0.00 0.00 0.00 3.01
1444 1663 3.125316 GCTACGTGGTGTACAAAGTTCA 58.875 45.455 0.00 0.00 0.00 3.18
1445 1664 3.183775 GCTACGTGGTGTACAAAGTTCAG 59.816 47.826 0.00 0.00 0.00 3.02
1446 1665 3.255969 ACGTGGTGTACAAAGTTCAGT 57.744 42.857 0.00 0.00 0.00 3.41
1447 1666 3.602483 ACGTGGTGTACAAAGTTCAGTT 58.398 40.909 0.00 0.00 0.00 3.16
1448 1667 3.619929 ACGTGGTGTACAAAGTTCAGTTC 59.380 43.478 0.00 0.00 0.00 3.01
1449 1668 3.001939 CGTGGTGTACAAAGTTCAGTTCC 59.998 47.826 0.00 0.00 0.00 3.62
1450 1669 3.001939 GTGGTGTACAAAGTTCAGTTCCG 59.998 47.826 0.00 0.00 0.00 4.30
1451 1670 3.200483 GGTGTACAAAGTTCAGTTCCGT 58.800 45.455 0.00 0.00 0.00 4.69
1452 1671 3.624410 GGTGTACAAAGTTCAGTTCCGTT 59.376 43.478 0.00 0.00 0.00 4.44
1453 1672 4.260497 GGTGTACAAAGTTCAGTTCCGTTC 60.260 45.833 0.00 0.00 0.00 3.95
1454 1673 3.872771 TGTACAAAGTTCAGTTCCGTTCC 59.127 43.478 0.00 0.00 0.00 3.62
1455 1674 3.277142 ACAAAGTTCAGTTCCGTTCCT 57.723 42.857 0.00 0.00 0.00 3.36
1456 1675 3.617284 ACAAAGTTCAGTTCCGTTCCTT 58.383 40.909 0.00 0.00 0.00 3.36
1457 1676 4.773013 ACAAAGTTCAGTTCCGTTCCTTA 58.227 39.130 0.00 0.00 0.00 2.69
1458 1677 5.187687 ACAAAGTTCAGTTCCGTTCCTTAA 58.812 37.500 0.00 0.00 0.00 1.85
1459 1678 5.648960 ACAAAGTTCAGTTCCGTTCCTTAAA 59.351 36.000 0.00 0.00 0.00 1.52
1460 1679 6.183360 ACAAAGTTCAGTTCCGTTCCTTAAAG 60.183 38.462 0.00 0.00 0.00 1.85
1461 1680 5.286267 AGTTCAGTTCCGTTCCTTAAAGA 57.714 39.130 0.00 0.00 0.00 2.52
1462 1681 5.298347 AGTTCAGTTCCGTTCCTTAAAGAG 58.702 41.667 0.00 0.00 0.00 2.85
1464 1683 3.644738 TCAGTTCCGTTCCTTAAAGAGGT 59.355 43.478 0.00 0.00 46.39 3.85
1465 1684 4.102054 TCAGTTCCGTTCCTTAAAGAGGTT 59.898 41.667 0.00 0.00 46.39 3.50
1466 1685 5.305128 TCAGTTCCGTTCCTTAAAGAGGTTA 59.695 40.000 0.00 0.00 46.39 2.85
1467 1686 5.993441 CAGTTCCGTTCCTTAAAGAGGTTAA 59.007 40.000 0.00 0.00 46.39 2.01
1468 1687 6.653740 CAGTTCCGTTCCTTAAAGAGGTTAAT 59.346 38.462 0.00 0.00 46.39 1.40
1469 1688 7.820872 CAGTTCCGTTCCTTAAAGAGGTTAATA 59.179 37.037 0.00 0.00 46.39 0.98
1470 1689 8.377799 AGTTCCGTTCCTTAAAGAGGTTAATAA 58.622 33.333 0.00 0.00 46.39 1.40
1471 1690 9.170734 GTTCCGTTCCTTAAAGAGGTTAATAAT 57.829 33.333 0.00 0.00 46.39 1.28
1540 1843 6.057627 AGTTCAATCGGAGTACGTATGTAG 57.942 41.667 0.00 0.00 44.69 2.74
1541 1844 5.819379 AGTTCAATCGGAGTACGTATGTAGA 59.181 40.000 0.00 0.00 44.69 2.59
1542 1845 5.663795 TCAATCGGAGTACGTATGTAGAC 57.336 43.478 0.00 0.00 44.69 2.59
1544 1847 5.585844 TCAATCGGAGTACGTATGTAGACAA 59.414 40.000 0.00 0.00 44.69 3.18
1546 1849 5.413969 TCGGAGTACGTATGTAGACAATG 57.586 43.478 0.00 0.00 44.69 2.82
1547 1850 4.877823 TCGGAGTACGTATGTAGACAATGT 59.122 41.667 0.00 0.00 44.69 2.71
1548 1851 6.048509 TCGGAGTACGTATGTAGACAATGTA 58.951 40.000 0.00 0.00 44.69 2.29
1549 1852 6.201615 TCGGAGTACGTATGTAGACAATGTAG 59.798 42.308 0.00 0.00 44.69 2.74
1550 1853 6.018425 CGGAGTACGTATGTAGACAATGTAGT 60.018 42.308 0.00 0.00 37.93 2.73
1551 1854 7.169813 CGGAGTACGTATGTAGACAATGTAGTA 59.830 40.741 0.00 0.00 37.93 1.82
1552 1855 8.494347 GGAGTACGTATGTAGACAATGTAGTAG 58.506 40.741 0.00 0.00 0.00 2.57
1581 1884 8.523658 CGTATAAAATAGACATCTCCTCCATCA 58.476 37.037 0.00 0.00 0.00 3.07
1612 1915 3.883626 GGTCGCTGACTCACTGCAAGT 62.884 57.143 8.26 0.00 39.51 3.16
1701 2005 2.138596 CACAAAAGCGTGCCAAAGAT 57.861 45.000 0.00 0.00 0.00 2.40
1713 2017 4.265073 GTGCCAAAGATACATCCACTTCT 58.735 43.478 0.00 0.00 0.00 2.85
1714 2018 4.333926 GTGCCAAAGATACATCCACTTCTC 59.666 45.833 0.00 0.00 0.00 2.87
1715 2019 4.225942 TGCCAAAGATACATCCACTTCTCT 59.774 41.667 0.00 0.00 0.00 3.10
1716 2020 4.813697 GCCAAAGATACATCCACTTCTCTC 59.186 45.833 0.00 0.00 0.00 3.20
1770 2076 2.108250 ACAGCCTGCTCTTAAAGGGAAA 59.892 45.455 0.00 0.00 33.87 3.13
1773 2079 2.555448 GCCTGCTCTTAAAGGGAAAGGT 60.555 50.000 0.00 0.00 33.87 3.50
1774 2080 3.767711 CCTGCTCTTAAAGGGAAAGGTT 58.232 45.455 0.00 0.00 0.00 3.50
1789 2095 4.954442 GAAAGGTTTAGTTTCCATCGACG 58.046 43.478 0.00 0.00 0.00 5.12
1820 2139 5.504853 AGGAAAAGAAAAGATCCTAGCTGG 58.495 41.667 0.00 0.00 40.47 4.85
1821 2140 5.014649 AGGAAAAGAAAAGATCCTAGCTGGT 59.985 40.000 0.00 0.00 40.47 4.00
1822 2141 5.712446 GGAAAAGAAAAGATCCTAGCTGGTT 59.288 40.000 0.00 0.00 37.07 3.67
1825 2144 8.706322 AAAAGAAAAGATCCTAGCTGGTTTTA 57.294 30.769 0.00 0.00 37.07 1.52
1829 2148 8.164070 AGAAAAGATCCTAGCTGGTTTTAAAGA 58.836 33.333 0.00 0.00 37.07 2.52
1834 2153 7.554476 AGATCCTAGCTGGTTTTAAAGATGAAC 59.446 37.037 0.00 0.00 37.07 3.18
1835 2154 6.539173 TCCTAGCTGGTTTTAAAGATGAACA 58.461 36.000 0.00 0.00 37.07 3.18
1875 2212 4.910195 ACTGCTATGAAAATGACCAGTGA 58.090 39.130 0.00 0.00 31.54 3.41
1890 2227 3.071602 ACCAGTGAATAATGGATCGAGGG 59.928 47.826 0.33 0.00 44.70 4.30
1894 2231 6.295859 CCAGTGAATAATGGATCGAGGGATAA 60.296 42.308 0.00 0.00 44.70 1.75
1896 2233 7.332926 CAGTGAATAATGGATCGAGGGATAAAG 59.667 40.741 0.00 0.00 31.51 1.85
1900 2240 9.284968 GAATAATGGATCGAGGGATAAAGAAAA 57.715 33.333 0.00 0.00 31.51 2.29
1913 2253 6.463755 GGGATAAAGAAAAGGGTGAAAAGCAA 60.464 38.462 0.00 0.00 0.00 3.91
1950 2290 1.625616 CTGTCGGTACATGGTCGAAC 58.374 55.000 0.00 0.00 34.37 3.95
1957 2297 3.730061 CGGTACATGGTCGAACTCAGTAC 60.730 52.174 16.86 16.86 0.00 2.73
1966 2306 5.155643 GGTCGAACTCAGTACTTCTCTTTC 58.844 45.833 0.00 0.00 0.00 2.62
1969 2309 4.218852 CGAACTCAGTACTTCTCTTTCCCT 59.781 45.833 0.00 0.00 0.00 4.20
1970 2310 5.415077 CGAACTCAGTACTTCTCTTTCCCTA 59.585 44.000 0.00 0.00 0.00 3.53
1971 2311 6.403855 CGAACTCAGTACTTCTCTTTCCCTAG 60.404 46.154 0.00 0.00 0.00 3.02
2001 2343 1.244019 ATGCTGACTTTGCCGGAACC 61.244 55.000 5.05 0.00 0.00 3.62
2002 2344 2.626780 GCTGACTTTGCCGGAACCC 61.627 63.158 5.05 0.00 0.00 4.11
2005 2347 0.821711 TGACTTTGCCGGAACCCTTG 60.822 55.000 5.05 0.00 0.00 3.61
2019 2361 0.177141 CCCTTGCCTAATCCGAACGA 59.823 55.000 0.00 0.00 0.00 3.85
2043 2385 5.645497 AGATTGATGTTACTTCCTTCAGTGC 59.355 40.000 0.00 0.00 0.00 4.40
2044 2386 4.623932 TGATGTTACTTCCTTCAGTGCT 57.376 40.909 0.00 0.00 0.00 4.40
2046 2388 4.040339 TGATGTTACTTCCTTCAGTGCTGA 59.960 41.667 0.00 0.00 37.91 4.26
2047 2389 4.623932 TGTTACTTCCTTCAGTGCTGAT 57.376 40.909 2.47 0.00 39.64 2.90
2048 2390 4.569943 TGTTACTTCCTTCAGTGCTGATC 58.430 43.478 2.47 0.00 39.64 2.92
2049 2391 4.040339 TGTTACTTCCTTCAGTGCTGATCA 59.960 41.667 2.47 0.00 39.64 2.92
2050 2392 3.777106 ACTTCCTTCAGTGCTGATCAA 57.223 42.857 2.47 0.00 39.64 2.57
2051 2393 3.672808 ACTTCCTTCAGTGCTGATCAAG 58.327 45.455 2.47 7.87 39.64 3.02
2052 2394 3.072184 ACTTCCTTCAGTGCTGATCAAGT 59.928 43.478 2.47 8.40 39.64 3.16
2053 2395 3.325293 TCCTTCAGTGCTGATCAAGTC 57.675 47.619 2.47 0.00 39.64 3.01
2054 2396 2.634453 TCCTTCAGTGCTGATCAAGTCA 59.366 45.455 2.47 0.00 39.64 3.41
2055 2397 3.262660 TCCTTCAGTGCTGATCAAGTCAT 59.737 43.478 2.47 0.00 39.64 3.06
2056 2398 3.374367 CCTTCAGTGCTGATCAAGTCATG 59.626 47.826 2.47 0.00 39.64 3.07
2057 2399 3.690475 TCAGTGCTGATCAAGTCATGT 57.310 42.857 0.00 0.00 35.97 3.21
2058 2400 3.332034 TCAGTGCTGATCAAGTCATGTG 58.668 45.455 0.00 0.00 35.97 3.21
2059 2401 2.418976 CAGTGCTGATCAAGTCATGTGG 59.581 50.000 0.00 0.00 35.97 4.17
2060 2402 2.303890 AGTGCTGATCAAGTCATGTGGA 59.696 45.455 0.00 0.00 35.97 4.02
2061 2403 2.676839 GTGCTGATCAAGTCATGTGGAG 59.323 50.000 0.00 0.00 35.97 3.86
2062 2404 1.669779 GCTGATCAAGTCATGTGGAGC 59.330 52.381 0.00 0.00 35.97 4.70
2063 2405 2.938314 GCTGATCAAGTCATGTGGAGCA 60.938 50.000 0.00 0.00 35.97 4.26
2064 2406 2.937149 CTGATCAAGTCATGTGGAGCAG 59.063 50.000 0.00 8.59 37.43 4.24
2065 2407 2.303890 TGATCAAGTCATGTGGAGCAGT 59.696 45.455 0.00 0.00 0.00 4.40
2066 2408 2.174363 TCAAGTCATGTGGAGCAGTG 57.826 50.000 0.00 0.00 0.00 3.66
2067 2409 1.693606 TCAAGTCATGTGGAGCAGTGA 59.306 47.619 0.00 0.00 0.00 3.41
2068 2410 2.104622 TCAAGTCATGTGGAGCAGTGAA 59.895 45.455 0.00 0.00 0.00 3.18
2069 2411 2.880268 CAAGTCATGTGGAGCAGTGAAA 59.120 45.455 0.00 0.00 0.00 2.69
2070 2412 3.213206 AGTCATGTGGAGCAGTGAAAA 57.787 42.857 0.00 0.00 0.00 2.29
2071 2413 3.554934 AGTCATGTGGAGCAGTGAAAAA 58.445 40.909 0.00 0.00 0.00 1.94
2072 2414 4.147321 AGTCATGTGGAGCAGTGAAAAAT 58.853 39.130 0.00 0.00 0.00 1.82
2073 2415 4.022589 AGTCATGTGGAGCAGTGAAAAATG 60.023 41.667 0.00 0.00 0.00 2.32
2074 2416 4.022935 GTCATGTGGAGCAGTGAAAAATGA 60.023 41.667 0.00 0.00 0.00 2.57
2075 2417 4.583907 TCATGTGGAGCAGTGAAAAATGAA 59.416 37.500 0.00 0.00 0.00 2.57
2076 2418 4.305989 TGTGGAGCAGTGAAAAATGAAC 57.694 40.909 0.00 0.00 0.00 3.18
2077 2419 3.698539 TGTGGAGCAGTGAAAAATGAACA 59.301 39.130 0.00 0.00 0.00 3.18
2078 2420 4.159321 TGTGGAGCAGTGAAAAATGAACAA 59.841 37.500 0.00 0.00 0.00 2.83
2079 2421 5.108517 GTGGAGCAGTGAAAAATGAACAAA 58.891 37.500 0.00 0.00 0.00 2.83
2080 2422 5.754890 GTGGAGCAGTGAAAAATGAACAAAT 59.245 36.000 0.00 0.00 0.00 2.32
2081 2423 5.984926 TGGAGCAGTGAAAAATGAACAAATC 59.015 36.000 0.00 0.00 0.00 2.17
2082 2424 6.183360 TGGAGCAGTGAAAAATGAACAAATCT 60.183 34.615 0.00 0.00 0.00 2.40
2083 2425 6.145048 GGAGCAGTGAAAAATGAACAAATCTG 59.855 38.462 0.00 0.00 0.00 2.90
2084 2426 5.987347 AGCAGTGAAAAATGAACAAATCTGG 59.013 36.000 0.00 0.00 0.00 3.86
2085 2427 5.333568 GCAGTGAAAAATGAACAAATCTGGC 60.334 40.000 0.00 0.00 0.00 4.85
2086 2428 5.178067 CAGTGAAAAATGAACAAATCTGGCC 59.822 40.000 0.00 0.00 0.00 5.36
2087 2429 5.055812 GTGAAAAATGAACAAATCTGGCCA 58.944 37.500 4.71 4.71 0.00 5.36
2088 2430 5.702209 GTGAAAAATGAACAAATCTGGCCAT 59.298 36.000 5.51 0.00 0.00 4.40
2089 2431 6.205270 GTGAAAAATGAACAAATCTGGCCATT 59.795 34.615 5.51 0.00 33.12 3.16
2090 2432 6.771749 TGAAAAATGAACAAATCTGGCCATTT 59.228 30.769 5.51 1.11 38.85 2.32
2091 2433 7.284944 TGAAAAATGAACAAATCTGGCCATTTT 59.715 29.630 5.51 6.97 43.13 1.82
2092 2434 7.585579 AAAATGAACAAATCTGGCCATTTTT 57.414 28.000 5.51 6.55 41.10 1.94
2151 2493 6.761731 TTTTAAATGATCCACTTTTGCGTG 57.238 33.333 0.00 0.00 34.71 5.34
2152 2494 5.697473 TTAAATGATCCACTTTTGCGTGA 57.303 34.783 0.00 0.00 37.06 4.35
2153 2495 3.559238 AATGATCCACTTTTGCGTGAC 57.441 42.857 0.00 0.00 37.06 3.67
2154 2496 0.865111 TGATCCACTTTTGCGTGACG 59.135 50.000 0.00 0.00 37.06 4.35
2167 2509 1.990799 CGTGACGCTCATGGTTAAGA 58.009 50.000 0.00 0.00 29.96 2.10
2168 2510 1.654105 CGTGACGCTCATGGTTAAGAC 59.346 52.381 0.00 0.00 29.96 3.01
2169 2511 1.654105 GTGACGCTCATGGTTAAGACG 59.346 52.381 0.00 0.00 0.00 4.18
2170 2512 1.271379 TGACGCTCATGGTTAAGACGT 59.729 47.619 0.00 0.00 34.58 4.34
2171 2513 2.288579 TGACGCTCATGGTTAAGACGTT 60.289 45.455 0.00 0.00 31.63 3.99
2172 2514 2.066262 ACGCTCATGGTTAAGACGTTG 58.934 47.619 0.00 0.00 0.00 4.10
2173 2515 2.066262 CGCTCATGGTTAAGACGTTGT 58.934 47.619 0.00 0.00 0.00 3.32
2174 2516 2.159841 CGCTCATGGTTAAGACGTTGTG 60.160 50.000 0.00 0.00 0.00 3.33
2175 2517 3.064207 GCTCATGGTTAAGACGTTGTGA 58.936 45.455 0.00 0.00 0.00 3.58
2176 2518 3.684788 GCTCATGGTTAAGACGTTGTGAT 59.315 43.478 0.00 0.00 0.00 3.06
2177 2519 4.868171 GCTCATGGTTAAGACGTTGTGATA 59.132 41.667 0.00 0.00 0.00 2.15
2178 2520 5.005779 GCTCATGGTTAAGACGTTGTGATAG 59.994 44.000 0.00 0.00 0.00 2.08
2179 2521 6.275494 TCATGGTTAAGACGTTGTGATAGA 57.725 37.500 0.00 0.00 0.00 1.98
2180 2522 6.873997 TCATGGTTAAGACGTTGTGATAGAT 58.126 36.000 0.00 0.00 0.00 1.98
2181 2523 8.002984 TCATGGTTAAGACGTTGTGATAGATA 57.997 34.615 0.00 0.00 0.00 1.98
2182 2524 8.135529 TCATGGTTAAGACGTTGTGATAGATAG 58.864 37.037 0.00 0.00 0.00 2.08
2183 2525 6.270815 TGGTTAAGACGTTGTGATAGATAGC 58.729 40.000 0.00 0.00 0.00 2.97
2184 2526 6.127563 TGGTTAAGACGTTGTGATAGATAGCA 60.128 38.462 0.00 0.00 0.00 3.49
2185 2527 6.924060 GGTTAAGACGTTGTGATAGATAGCAT 59.076 38.462 0.00 0.00 0.00 3.79
2186 2528 7.096023 GGTTAAGACGTTGTGATAGATAGCATG 60.096 40.741 0.00 0.00 0.00 4.06
2187 2529 5.774498 AGACGTTGTGATAGATAGCATGA 57.226 39.130 0.00 0.00 0.00 3.07
2188 2530 5.524284 AGACGTTGTGATAGATAGCATGAC 58.476 41.667 0.00 0.00 0.00 3.06
2189 2531 4.290969 ACGTTGTGATAGATAGCATGACG 58.709 43.478 0.00 11.84 38.11 4.35
2190 2532 3.120286 CGTTGTGATAGATAGCATGACGC 59.880 47.826 0.00 0.00 42.91 5.19
2191 2533 3.303881 TGTGATAGATAGCATGACGCC 57.696 47.619 0.00 0.00 44.04 5.68
2192 2534 2.029020 TGTGATAGATAGCATGACGCCC 60.029 50.000 0.00 0.00 44.04 6.13
2193 2535 2.232452 GTGATAGATAGCATGACGCCCT 59.768 50.000 0.00 0.00 44.04 5.19
2194 2536 3.444034 GTGATAGATAGCATGACGCCCTA 59.556 47.826 0.00 0.00 44.04 3.53
2195 2537 3.444034 TGATAGATAGCATGACGCCCTAC 59.556 47.826 0.00 0.00 44.04 3.18
2196 2538 0.969894 AGATAGCATGACGCCCTACC 59.030 55.000 0.00 0.00 44.04 3.18
2197 2539 0.037232 GATAGCATGACGCCCTACCC 60.037 60.000 0.00 0.00 44.04 3.69
2198 2540 1.816863 ATAGCATGACGCCCTACCCG 61.817 60.000 0.00 0.00 44.04 5.28
2199 2541 4.157120 GCATGACGCCCTACCCGT 62.157 66.667 0.00 0.00 42.31 5.28
2200 2542 2.202878 CATGACGCCCTACCCGTG 60.203 66.667 0.00 0.00 39.30 4.94
2201 2543 2.682494 ATGACGCCCTACCCGTGT 60.682 61.111 0.00 0.00 39.30 4.49
2202 2544 2.718073 ATGACGCCCTACCCGTGTC 61.718 63.158 0.00 0.00 39.30 3.67
2203 2545 4.487412 GACGCCCTACCCGTGTCG 62.487 72.222 0.00 0.00 39.30 4.35
2207 2549 3.467226 CCCTACCCGTGTCGCCAT 61.467 66.667 0.00 0.00 0.00 4.40
2208 2550 2.202878 CCTACCCGTGTCGCCATG 60.203 66.667 0.00 0.00 0.00 3.66
2209 2551 2.890474 CTACCCGTGTCGCCATGC 60.890 66.667 0.00 0.00 0.00 4.06
2210 2552 3.371097 CTACCCGTGTCGCCATGCT 62.371 63.158 0.00 0.00 0.00 3.79
2211 2553 2.011741 CTACCCGTGTCGCCATGCTA 62.012 60.000 0.00 0.00 0.00 3.49
2212 2554 2.011741 TACCCGTGTCGCCATGCTAG 62.012 60.000 0.00 0.00 0.00 3.42
2213 2555 2.586079 CCGTGTCGCCATGCTAGG 60.586 66.667 0.00 0.00 0.00 3.02
2214 2556 2.586079 CGTGTCGCCATGCTAGGG 60.586 66.667 0.00 0.00 0.00 3.53
2215 2557 2.584608 GTGTCGCCATGCTAGGGT 59.415 61.111 0.00 0.00 0.00 4.34
2216 2558 1.521681 GTGTCGCCATGCTAGGGTC 60.522 63.158 0.00 0.00 0.00 4.46
2217 2559 2.109181 GTCGCCATGCTAGGGTCC 59.891 66.667 0.00 0.00 0.00 4.46
2218 2560 2.364973 TCGCCATGCTAGGGTCCA 60.365 61.111 0.00 0.00 0.00 4.02
2219 2561 1.766059 TCGCCATGCTAGGGTCCAT 60.766 57.895 0.00 0.00 0.00 3.41
2220 2562 1.149174 CGCCATGCTAGGGTCCATT 59.851 57.895 0.00 0.00 0.00 3.16
2221 2563 0.466189 CGCCATGCTAGGGTCCATTT 60.466 55.000 0.00 0.00 0.00 2.32
2222 2564 1.035139 GCCATGCTAGGGTCCATTTG 58.965 55.000 0.00 0.00 0.00 2.32
2223 2565 1.035139 CCATGCTAGGGTCCATTTGC 58.965 55.000 0.00 0.00 0.00 3.68
2224 2566 1.685803 CCATGCTAGGGTCCATTTGCA 60.686 52.381 6.40 6.40 34.88 4.08
2225 2567 2.313317 CATGCTAGGGTCCATTTGCAT 58.687 47.619 9.84 9.84 41.08 3.96
2226 2568 1.766494 TGCTAGGGTCCATTTGCATG 58.234 50.000 0.00 0.00 0.00 4.06
2227 2569 1.284491 TGCTAGGGTCCATTTGCATGA 59.716 47.619 0.00 0.00 31.07 3.07
2228 2570 1.678101 GCTAGGGTCCATTTGCATGAC 59.322 52.381 0.00 0.00 31.07 3.06
2229 2571 1.942657 CTAGGGTCCATTTGCATGACG 59.057 52.381 0.00 0.00 31.07 4.35
2230 2572 1.139520 GGGTCCATTTGCATGACGC 59.860 57.895 0.00 0.00 42.89 5.19
2231 2573 1.139520 GGTCCATTTGCATGACGCC 59.860 57.895 0.00 0.00 41.33 5.68
2232 2574 1.139520 GTCCATTTGCATGACGCCC 59.860 57.895 0.00 0.00 41.33 6.13
2233 2575 2.102749 CCATTTGCATGACGCCCG 59.897 61.111 0.00 0.00 41.33 6.13
2234 2576 2.102749 CATTTGCATGACGCCCGG 59.897 61.111 0.00 0.00 41.33 5.73
2235 2577 3.140141 ATTTGCATGACGCCCGGG 61.140 61.111 19.09 19.09 41.33 5.73
2236 2578 3.936772 ATTTGCATGACGCCCGGGT 62.937 57.895 24.63 1.57 41.33 5.28
2252 2594 4.966787 GTCAGGGCGCCCAAACCA 62.967 66.667 45.13 21.95 38.92 3.67
2253 2595 4.659172 TCAGGGCGCCCAAACCAG 62.659 66.667 45.13 26.22 38.92 4.00
2261 2603 4.740822 CCCAAACCAGGGGGCGAG 62.741 72.222 0.00 0.00 45.60 5.03
2262 2604 3.646715 CCAAACCAGGGGGCGAGA 61.647 66.667 0.00 0.00 37.90 4.04
2263 2605 2.359975 CAAACCAGGGGGCGAGAC 60.360 66.667 0.00 0.00 37.90 3.36
2264 2606 2.852075 AAACCAGGGGGCGAGACA 60.852 61.111 0.00 0.00 37.90 3.41
2265 2607 2.457323 AAACCAGGGGGCGAGACAA 61.457 57.895 0.00 0.00 37.90 3.18
2266 2608 2.692273 AAACCAGGGGGCGAGACAAC 62.692 60.000 0.00 0.00 37.90 3.32
2267 2609 3.636231 CCAGGGGGCGAGACAACA 61.636 66.667 0.00 0.00 0.00 3.33
2268 2610 2.671070 CAGGGGGCGAGACAACAT 59.329 61.111 0.00 0.00 0.00 2.71
2269 2611 1.746615 CAGGGGGCGAGACAACATG 60.747 63.158 0.00 0.00 0.00 3.21
2270 2612 1.918293 AGGGGGCGAGACAACATGA 60.918 57.895 0.00 0.00 0.00 3.07
2271 2613 1.745489 GGGGGCGAGACAACATGAC 60.745 63.158 0.00 0.00 0.00 3.06
2272 2614 1.003839 GGGGCGAGACAACATGACA 60.004 57.895 0.00 0.00 0.00 3.58
2273 2615 1.298859 GGGGCGAGACAACATGACAC 61.299 60.000 0.00 0.00 0.00 3.67
2274 2616 1.298859 GGGCGAGACAACATGACACC 61.299 60.000 0.00 0.00 0.00 4.16
2275 2617 1.298859 GGCGAGACAACATGACACCC 61.299 60.000 0.00 0.00 0.00 4.61
2276 2618 0.602638 GCGAGACAACATGACACCCA 60.603 55.000 0.00 0.00 0.00 4.51
2277 2619 1.877637 CGAGACAACATGACACCCAA 58.122 50.000 0.00 0.00 0.00 4.12
2278 2620 2.217750 CGAGACAACATGACACCCAAA 58.782 47.619 0.00 0.00 0.00 3.28
2279 2621 2.032030 CGAGACAACATGACACCCAAAC 60.032 50.000 0.00 0.00 0.00 2.93
2280 2622 2.293399 GAGACAACATGACACCCAAACC 59.707 50.000 0.00 0.00 0.00 3.27
2281 2623 2.028130 GACAACATGACACCCAAACCA 58.972 47.619 0.00 0.00 0.00 3.67
2282 2624 2.428890 GACAACATGACACCCAAACCAA 59.571 45.455 0.00 0.00 0.00 3.67
2283 2625 2.430332 ACAACATGACACCCAAACCAAG 59.570 45.455 0.00 0.00 0.00 3.61
2284 2626 1.703411 ACATGACACCCAAACCAAGG 58.297 50.000 0.00 0.00 0.00 3.61
2291 2633 4.911901 CCAAACCAAGGGGAACGA 57.088 55.556 0.00 0.00 38.05 3.85
2292 2634 2.641197 CCAAACCAAGGGGAACGAG 58.359 57.895 0.00 0.00 38.05 4.18
2293 2635 0.179001 CCAAACCAAGGGGAACGAGT 60.179 55.000 0.00 0.00 38.05 4.18
2294 2636 1.687563 CAAACCAAGGGGAACGAGTT 58.312 50.000 0.00 0.00 38.05 3.01
2295 2637 2.028876 CAAACCAAGGGGAACGAGTTT 58.971 47.619 0.00 0.00 38.05 2.66
2296 2638 1.977056 AACCAAGGGGAACGAGTTTC 58.023 50.000 0.00 0.00 38.05 2.78
2303 2645 4.592426 GAACGAGTTTCCTCCGGG 57.408 61.111 0.00 0.00 33.93 5.73
2304 2646 1.969862 GAACGAGTTTCCTCCGGGA 59.030 57.895 0.00 0.00 40.36 5.14
2312 2654 2.458892 TTCCTCCGGGAACACATGT 58.541 52.632 0.00 0.00 45.72 3.21
2313 2655 1.646912 TTCCTCCGGGAACACATGTA 58.353 50.000 0.00 0.00 45.72 2.29
2314 2656 1.191535 TCCTCCGGGAACACATGTAG 58.808 55.000 0.00 0.00 38.93 2.74
2315 2657 1.191535 CCTCCGGGAACACATGTAGA 58.808 55.000 0.00 0.00 33.58 2.59
2316 2658 1.762957 CCTCCGGGAACACATGTAGAT 59.237 52.381 0.00 0.00 33.58 1.98
2317 2659 2.170607 CCTCCGGGAACACATGTAGATT 59.829 50.000 0.00 0.00 33.58 2.40
2318 2660 3.458189 CTCCGGGAACACATGTAGATTC 58.542 50.000 0.00 3.07 0.00 2.52
2319 2661 2.835156 TCCGGGAACACATGTAGATTCA 59.165 45.455 0.00 0.00 0.00 2.57
2320 2662 3.118775 TCCGGGAACACATGTAGATTCAG 60.119 47.826 0.00 9.84 0.00 3.02
2321 2663 3.118775 CCGGGAACACATGTAGATTCAGA 60.119 47.826 14.97 0.00 0.00 3.27
2322 2664 4.503910 CGGGAACACATGTAGATTCAGAA 58.496 43.478 14.97 0.00 0.00 3.02
2323 2665 4.935205 CGGGAACACATGTAGATTCAGAAA 59.065 41.667 14.97 0.00 0.00 2.52
2324 2666 5.586243 CGGGAACACATGTAGATTCAGAAAT 59.414 40.000 14.97 0.00 0.00 2.17
2325 2667 6.238211 CGGGAACACATGTAGATTCAGAAATC 60.238 42.308 14.97 0.00 41.43 2.17
2339 2681 8.810652 GATTCAGAAATCTAGTGGTGACTATC 57.189 38.462 0.00 0.00 38.61 2.08
2340 2682 7.962995 TTCAGAAATCTAGTGGTGACTATCT 57.037 36.000 0.00 0.00 34.05 1.98
2341 2683 9.647918 ATTCAGAAATCTAGTGGTGACTATCTA 57.352 33.333 0.00 0.00 34.05 1.98
2342 2684 8.453238 TCAGAAATCTAGTGGTGACTATCTAC 57.547 38.462 0.00 0.00 34.05 2.59
2343 2685 8.275758 TCAGAAATCTAGTGGTGACTATCTACT 58.724 37.037 0.00 0.00 34.05 2.57
2344 2686 8.908903 CAGAAATCTAGTGGTGACTATCTACTT 58.091 37.037 0.00 0.00 34.05 2.24
2345 2687 9.127277 AGAAATCTAGTGGTGACTATCTACTTC 57.873 37.037 0.00 0.00 34.05 3.01
2346 2688 7.826918 AATCTAGTGGTGACTATCTACTTCC 57.173 40.000 0.00 0.00 34.05 3.46
2347 2689 6.578313 TCTAGTGGTGACTATCTACTTCCT 57.422 41.667 0.00 0.00 34.05 3.36
2348 2690 6.593807 TCTAGTGGTGACTATCTACTTCCTC 58.406 44.000 0.00 0.00 34.05 3.71
2349 2691 4.538738 AGTGGTGACTATCTACTTCCTCC 58.461 47.826 0.00 0.00 0.00 4.30
2350 2692 3.315749 GTGGTGACTATCTACTTCCTCCG 59.684 52.174 0.00 0.00 0.00 4.63
2351 2693 3.053842 TGGTGACTATCTACTTCCTCCGT 60.054 47.826 0.00 0.00 0.00 4.69
2352 2694 3.565063 GGTGACTATCTACTTCCTCCGTC 59.435 52.174 0.00 0.00 0.00 4.79
2353 2695 4.197750 GTGACTATCTACTTCCTCCGTCA 58.802 47.826 0.00 0.00 0.00 4.35
2354 2696 4.035441 GTGACTATCTACTTCCTCCGTCAC 59.965 50.000 0.00 0.00 41.83 3.67
2355 2697 4.197750 GACTATCTACTTCCTCCGTCACA 58.802 47.826 0.00 0.00 0.00 3.58
2356 2698 4.794334 ACTATCTACTTCCTCCGTCACAT 58.206 43.478 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.963855 CGGCGAACCATTCACCACA 60.964 57.895 0.00 0.00 31.28 4.17
188 215 3.207669 GCATCCAGCTGCCGGAAG 61.208 66.667 8.95 4.75 41.15 3.46
214 319 3.876341 ACGACACCAGACTAACCAAAAA 58.124 40.909 0.00 0.00 0.00 1.94
231 336 5.285798 CTAGCCTAGCTACAAGATACGAC 57.714 47.826 0.00 0.00 40.44 4.34
261 367 0.531200 GTACCACACGGCTAGCTCTT 59.469 55.000 15.72 0.00 34.57 2.85
263 369 4.808649 GTACCACACGGCTAGCTC 57.191 61.111 15.72 3.82 34.57 4.09
303 412 1.136872 CTTAGCTCACTCTGCGCGTC 61.137 60.000 8.43 0.00 32.55 5.19
304 413 1.153939 CTTAGCTCACTCTGCGCGT 60.154 57.895 8.43 0.00 32.55 6.01
305 414 2.512301 GCTTAGCTCACTCTGCGCG 61.512 63.158 0.00 0.00 32.55 6.86
306 415 0.101399 TAGCTTAGCTCACTCTGCGC 59.899 55.000 11.09 0.00 40.44 6.09
307 416 1.403679 ACTAGCTTAGCTCACTCTGCG 59.596 52.381 11.09 0.00 40.44 5.18
308 417 3.443976 GAACTAGCTTAGCTCACTCTGC 58.556 50.000 11.09 0.00 40.44 4.26
309 418 3.488384 CCGAACTAGCTTAGCTCACTCTG 60.488 52.174 11.09 0.00 40.44 3.35
310 419 2.685897 CCGAACTAGCTTAGCTCACTCT 59.314 50.000 11.09 0.00 40.44 3.24
311 420 2.223618 CCCGAACTAGCTTAGCTCACTC 60.224 54.545 11.09 4.68 40.44 3.51
312 421 1.751924 CCCGAACTAGCTTAGCTCACT 59.248 52.381 11.09 0.00 40.44 3.41
313 422 1.477295 ACCCGAACTAGCTTAGCTCAC 59.523 52.381 11.09 0.00 40.44 3.51
314 423 1.476891 CACCCGAACTAGCTTAGCTCA 59.523 52.381 11.09 0.00 40.44 4.26
315 424 1.803252 GCACCCGAACTAGCTTAGCTC 60.803 57.143 11.09 0.00 40.44 4.09
316 425 0.175989 GCACCCGAACTAGCTTAGCT 59.824 55.000 12.67 12.67 43.41 3.32
317 426 0.175989 AGCACCCGAACTAGCTTAGC 59.824 55.000 0.00 0.00 32.52 3.09
318 427 2.541556 GAAGCACCCGAACTAGCTTAG 58.458 52.381 0.00 0.00 46.35 2.18
377 506 1.134521 TGGGCGCATGACTAAACTAGG 60.135 52.381 10.83 0.00 0.00 3.02
379 508 3.386726 AGTATGGGCGCATGACTAAACTA 59.613 43.478 25.20 0.00 0.00 2.24
434 563 7.201504 GCAATCCTTTAAGAACTTCGTAGGTAC 60.202 40.741 0.00 0.00 0.00 3.34
435 564 6.815142 GCAATCCTTTAAGAACTTCGTAGGTA 59.185 38.462 0.00 0.00 0.00 3.08
436 565 5.642491 GCAATCCTTTAAGAACTTCGTAGGT 59.358 40.000 0.00 0.00 0.00 3.08
523 660 6.152831 CGGGGGAAAAACTCTCAAGATTATTT 59.847 38.462 0.00 0.00 0.00 1.40
533 670 1.269723 CTTTGCGGGGGAAAAACTCTC 59.730 52.381 0.00 0.00 0.00 3.20
591 768 1.247567 AAGTTCTTCATGGGCCAACG 58.752 50.000 11.89 4.89 0.00 4.10
616 815 5.929415 GTCTAGAAAAAGTCTCCAGAACCTG 59.071 44.000 0.00 0.00 37.84 4.00
620 819 4.281182 AGCGTCTAGAAAAAGTCTCCAGAA 59.719 41.667 0.00 0.00 37.84 3.02
625 824 5.060693 CGGTTTAGCGTCTAGAAAAAGTCTC 59.939 44.000 0.00 0.00 37.84 3.36
627 826 4.091075 CCGGTTTAGCGTCTAGAAAAAGTC 59.909 45.833 0.00 0.00 0.00 3.01
630 829 2.738314 GCCGGTTTAGCGTCTAGAAAAA 59.262 45.455 1.90 0.00 0.00 1.94
631 830 2.340337 GCCGGTTTAGCGTCTAGAAAA 58.660 47.619 1.90 0.00 0.00 2.29
667 866 2.641815 CCAGGCCTAATGAATAGCTCCT 59.358 50.000 3.98 0.00 35.01 3.69
670 869 1.074566 GGCCAGGCCTAATGAATAGCT 59.925 52.381 24.99 0.00 46.69 3.32
671 870 1.539157 GGCCAGGCCTAATGAATAGC 58.461 55.000 24.99 0.00 46.69 2.97
700 899 4.376413 CGGAATGTCACGAACTTTCAGAAG 60.376 45.833 16.68 0.00 41.52 2.85
749 950 3.567579 CTTCCATGCCCCACACGGT 62.568 63.158 0.00 0.00 0.00 4.83
759 960 2.098117 GGTGACAGTTATGCTTCCATGC 59.902 50.000 0.00 0.00 32.85 4.06
764 965 0.727398 GGCGGTGACAGTTATGCTTC 59.273 55.000 0.00 0.00 0.00 3.86
828 1034 1.676014 GCTGCACCGGAGTTTGTATCT 60.676 52.381 9.46 0.00 0.00 1.98
894 1101 1.300697 GACGTGCGGTTGTCTCCTT 60.301 57.895 0.00 0.00 32.37 3.36
950 1165 1.357258 CGAGCTGTGACTGATGTGCC 61.357 60.000 0.00 0.00 0.00 5.01
982 1197 4.764823 GGACATGTTTGATACCACTTGGAA 59.235 41.667 0.00 0.00 38.94 3.53
984 1199 3.443681 GGGACATGTTTGATACCACTTGG 59.556 47.826 0.00 0.00 42.17 3.61
987 1202 2.355716 CCGGGACATGTTTGATACCACT 60.356 50.000 0.00 0.00 0.00 4.00
988 1203 2.014128 CCGGGACATGTTTGATACCAC 58.986 52.381 0.00 0.00 0.00 4.16
989 1204 1.680555 GCCGGGACATGTTTGATACCA 60.681 52.381 2.18 0.00 0.00 3.25
990 1205 1.021968 GCCGGGACATGTTTGATACC 58.978 55.000 2.18 0.00 0.00 2.73
1031 1246 0.614697 TAGCAGCAGCAGGACCAGTA 60.615 55.000 3.17 0.00 45.49 2.74
1078 1293 2.509336 CTCCGCGATCTTTGCCGT 60.509 61.111 8.23 0.00 0.00 5.68
1360 1575 4.023783 CGTCAACTTCGGTTACAACAAAC 58.976 43.478 0.00 0.00 36.26 2.93
1361 1576 3.931468 TCGTCAACTTCGGTTACAACAAA 59.069 39.130 0.00 0.00 36.26 2.83
1363 1578 3.162202 TCGTCAACTTCGGTTACAACA 57.838 42.857 0.00 0.00 36.26 3.33
1414 1633 2.340337 ACACCACGTAGCCGATTTTAC 58.660 47.619 0.00 0.00 37.88 2.01
1433 1652 4.124970 AGGAACGGAACTGAACTTTGTAC 58.875 43.478 0.00 0.00 0.00 2.90
1434 1653 4.411256 AGGAACGGAACTGAACTTTGTA 57.589 40.909 0.00 0.00 0.00 2.41
1435 1654 3.277142 AGGAACGGAACTGAACTTTGT 57.723 42.857 0.00 0.00 0.00 2.83
1436 1655 5.744666 TTAAGGAACGGAACTGAACTTTG 57.255 39.130 0.00 0.00 0.00 2.77
1437 1656 6.117488 TCTTTAAGGAACGGAACTGAACTTT 58.883 36.000 0.00 0.00 0.00 2.66
1438 1657 5.677567 TCTTTAAGGAACGGAACTGAACTT 58.322 37.500 0.00 0.00 0.00 2.66
1439 1658 5.286267 TCTTTAAGGAACGGAACTGAACT 57.714 39.130 0.00 0.00 0.00 3.01
1440 1659 5.593183 CTCTTTAAGGAACGGAACTGAAC 57.407 43.478 0.00 0.00 0.00 3.18
1466 1685 9.685276 TGTGTTCTGAATTCTGACCATATTATT 57.315 29.630 14.12 0.00 0.00 1.40
1467 1686 9.685276 TTGTGTTCTGAATTCTGACCATATTAT 57.315 29.630 14.12 0.00 0.00 1.28
1468 1687 9.513906 TTTGTGTTCTGAATTCTGACCATATTA 57.486 29.630 14.12 3.09 0.00 0.98
1469 1688 8.408043 TTTGTGTTCTGAATTCTGACCATATT 57.592 30.769 14.12 0.00 0.00 1.28
1470 1689 7.667219 ACTTTGTGTTCTGAATTCTGACCATAT 59.333 33.333 14.12 0.00 0.00 1.78
1471 1690 6.998074 ACTTTGTGTTCTGAATTCTGACCATA 59.002 34.615 14.12 9.79 0.00 2.74
1472 1691 5.829924 ACTTTGTGTTCTGAATTCTGACCAT 59.170 36.000 14.12 0.00 0.00 3.55
1473 1692 5.192927 ACTTTGTGTTCTGAATTCTGACCA 58.807 37.500 13.97 11.01 0.00 4.02
1474 1693 5.757850 ACTTTGTGTTCTGAATTCTGACC 57.242 39.130 13.97 8.54 0.00 4.02
1484 1703 7.629222 AGGAACTGAATTGAACTTTGTGTTCTG 60.629 37.037 9.47 0.00 46.60 3.02
1485 1704 6.378280 AGGAACTGAATTGAACTTTGTGTTCT 59.622 34.615 9.47 0.00 46.60 3.01
1486 1705 6.564328 AGGAACTGAATTGAACTTTGTGTTC 58.436 36.000 2.00 2.00 46.63 3.18
1487 1706 6.530019 AGGAACTGAATTGAACTTTGTGTT 57.470 33.333 0.00 0.00 38.66 3.32
1488 1707 6.530019 AAGGAACTGAATTGAACTTTGTGT 57.470 33.333 0.00 0.00 40.86 3.72
1489 1708 8.925161 TTTAAGGAACTGAATTGAACTTTGTG 57.075 30.769 0.00 0.00 40.86 3.33
1548 1851 9.012161 GGAGATGTCTATTTTATACGTCCTACT 57.988 37.037 0.00 0.00 30.93 2.57
1549 1852 9.012161 AGGAGATGTCTATTTTATACGTCCTAC 57.988 37.037 0.00 0.00 30.93 3.18
1550 1853 9.228949 GAGGAGATGTCTATTTTATACGTCCTA 57.771 37.037 0.00 0.00 30.93 2.94
1551 1854 7.177041 GGAGGAGATGTCTATTTTATACGTCCT 59.823 40.741 0.00 0.00 30.93 3.85
1552 1855 7.039923 TGGAGGAGATGTCTATTTTATACGTCC 60.040 40.741 0.00 0.00 30.93 4.79
1621 1924 3.021269 ACGCTGTCATTTTCACGTAGA 57.979 42.857 0.00 0.00 31.03 2.59
1694 1998 5.046529 CGAGAGAAGTGGATGTATCTTTGG 58.953 45.833 0.00 0.00 0.00 3.28
1701 2005 1.476891 GTGGCGAGAGAAGTGGATGTA 59.523 52.381 0.00 0.00 0.00 2.29
1713 2017 2.164422 CAGACATTAGACAGTGGCGAGA 59.836 50.000 0.00 0.00 0.00 4.04
1714 2018 2.534298 CAGACATTAGACAGTGGCGAG 58.466 52.381 0.00 0.00 0.00 5.03
1715 2019 1.404181 GCAGACATTAGACAGTGGCGA 60.404 52.381 0.00 0.00 0.00 5.54
1716 2020 1.002366 GCAGACATTAGACAGTGGCG 58.998 55.000 0.00 0.00 0.00 5.69
1770 2076 3.947910 TCGTCGATGGAAACTAAACCT 57.052 42.857 4.48 0.00 0.00 3.50
1773 2079 6.847956 TTCTTTTCGTCGATGGAAACTAAA 57.152 33.333 7.01 0.40 33.43 1.85
1774 2080 6.073440 CCTTTCTTTTCGTCGATGGAAACTAA 60.073 38.462 7.01 2.68 33.43 2.24
1843 2180 9.162764 GTCATTTTCATAGCAGTAACTAAGGAA 57.837 33.333 0.00 0.00 0.00 3.36
1865 2202 5.512060 CCTCGATCCATTATTCACTGGTCAT 60.512 44.000 0.00 0.00 34.03 3.06
1875 2212 9.289782 CTTTTCTTTATCCCTCGATCCATTATT 57.710 33.333 0.00 0.00 0.00 1.40
1890 2227 9.875691 ATATTGCTTTTCACCCTTTTCTTTATC 57.124 29.630 0.00 0.00 0.00 1.75
1894 2231 6.295859 GGGATATTGCTTTTCACCCTTTTCTT 60.296 38.462 0.00 0.00 33.79 2.52
1896 2233 5.187772 AGGGATATTGCTTTTCACCCTTTTC 59.812 40.000 0.00 0.00 42.84 2.29
1900 2240 3.269381 TCAGGGATATTGCTTTTCACCCT 59.731 43.478 0.00 0.00 45.77 4.34
1913 2253 4.221703 CGACAGCTTAGGATTCAGGGATAT 59.778 45.833 0.00 0.00 0.00 1.63
1950 2290 6.844097 AACTAGGGAAAGAGAAGTACTGAG 57.156 41.667 0.00 0.00 0.00 3.35
1957 2297 8.863872 TTATCCAAAAACTAGGGAAAGAGAAG 57.136 34.615 0.00 0.00 33.73 2.85
1966 2306 5.888161 AGTCAGCATTATCCAAAAACTAGGG 59.112 40.000 0.00 0.00 0.00 3.53
1969 2309 7.090173 GCAAAGTCAGCATTATCCAAAAACTA 58.910 34.615 0.00 0.00 0.00 2.24
1970 2310 5.928264 GCAAAGTCAGCATTATCCAAAAACT 59.072 36.000 0.00 0.00 0.00 2.66
1971 2311 5.120674 GGCAAAGTCAGCATTATCCAAAAAC 59.879 40.000 0.00 0.00 0.00 2.43
2001 2343 1.136305 TCTCGTTCGGATTAGGCAAGG 59.864 52.381 0.00 0.00 0.00 3.61
2002 2344 2.579207 TCTCGTTCGGATTAGGCAAG 57.421 50.000 0.00 0.00 0.00 4.01
2005 2347 3.093717 TCAATCTCGTTCGGATTAGGC 57.906 47.619 7.95 0.00 32.86 3.93
2019 2361 5.645497 GCACTGAAGGAAGTAACATCAATCT 59.355 40.000 0.00 0.00 0.00 2.40
2043 2385 2.937149 CTGCTCCACATGACTTGATCAG 59.063 50.000 0.00 0.00 41.91 2.90
2044 2386 2.303890 ACTGCTCCACATGACTTGATCA 59.696 45.455 0.00 0.00 43.13 2.92
2046 2388 2.303890 TCACTGCTCCACATGACTTGAT 59.696 45.455 0.00 0.00 0.00 2.57
2047 2389 1.693606 TCACTGCTCCACATGACTTGA 59.306 47.619 0.00 0.00 0.00 3.02
2048 2390 2.174363 TCACTGCTCCACATGACTTG 57.826 50.000 0.00 0.00 0.00 3.16
2049 2391 2.936919 TTCACTGCTCCACATGACTT 57.063 45.000 0.00 0.00 0.00 3.01
2050 2392 2.936919 TTTCACTGCTCCACATGACT 57.063 45.000 0.00 0.00 0.00 3.41
2051 2393 3.988379 TTTTTCACTGCTCCACATGAC 57.012 42.857 0.00 0.00 0.00 3.06
2052 2394 4.143543 TCATTTTTCACTGCTCCACATGA 58.856 39.130 0.00 0.00 0.00 3.07
2053 2395 4.508461 TCATTTTTCACTGCTCCACATG 57.492 40.909 0.00 0.00 0.00 3.21
2054 2396 4.341806 TGTTCATTTTTCACTGCTCCACAT 59.658 37.500 0.00 0.00 0.00 3.21
2055 2397 3.698539 TGTTCATTTTTCACTGCTCCACA 59.301 39.130 0.00 0.00 0.00 4.17
2056 2398 4.305989 TGTTCATTTTTCACTGCTCCAC 57.694 40.909 0.00 0.00 0.00 4.02
2057 2399 4.998671 TTGTTCATTTTTCACTGCTCCA 57.001 36.364 0.00 0.00 0.00 3.86
2058 2400 6.145048 CAGATTTGTTCATTTTTCACTGCTCC 59.855 38.462 0.00 0.00 0.00 4.70
2059 2401 6.145048 CCAGATTTGTTCATTTTTCACTGCTC 59.855 38.462 0.00 0.00 0.00 4.26
2060 2402 5.987347 CCAGATTTGTTCATTTTTCACTGCT 59.013 36.000 0.00 0.00 0.00 4.24
2061 2403 5.333568 GCCAGATTTGTTCATTTTTCACTGC 60.334 40.000 0.00 0.00 0.00 4.40
2062 2404 5.178067 GGCCAGATTTGTTCATTTTTCACTG 59.822 40.000 0.00 0.00 0.00 3.66
2063 2405 5.163322 TGGCCAGATTTGTTCATTTTTCACT 60.163 36.000 0.00 0.00 0.00 3.41
2064 2406 5.055812 TGGCCAGATTTGTTCATTTTTCAC 58.944 37.500 0.00 0.00 0.00 3.18
2065 2407 5.287674 TGGCCAGATTTGTTCATTTTTCA 57.712 34.783 0.00 0.00 0.00 2.69
2066 2408 6.806388 AATGGCCAGATTTGTTCATTTTTC 57.194 33.333 13.05 0.00 0.00 2.29
2067 2409 7.585579 AAAATGGCCAGATTTGTTCATTTTT 57.414 28.000 13.05 5.50 39.35 1.94
2068 2410 7.585579 AAAAATGGCCAGATTTGTTCATTTT 57.414 28.000 13.05 6.05 41.42 1.82
2127 2469 6.980978 TCACGCAAAAGTGGATCATTTAAAAA 59.019 30.769 0.00 0.00 42.10 1.94
2128 2470 6.419413 GTCACGCAAAAGTGGATCATTTAAAA 59.581 34.615 0.00 0.00 42.10 1.52
2129 2471 5.918011 GTCACGCAAAAGTGGATCATTTAAA 59.082 36.000 0.00 0.00 42.10 1.52
2130 2472 5.457140 GTCACGCAAAAGTGGATCATTTAA 58.543 37.500 0.00 0.00 42.10 1.52
2131 2473 4.377943 CGTCACGCAAAAGTGGATCATTTA 60.378 41.667 0.00 0.00 42.10 1.40
2132 2474 3.609175 CGTCACGCAAAAGTGGATCATTT 60.609 43.478 0.00 0.00 42.10 2.32
2133 2475 2.095768 CGTCACGCAAAAGTGGATCATT 60.096 45.455 0.00 0.00 42.10 2.57
2134 2476 1.464608 CGTCACGCAAAAGTGGATCAT 59.535 47.619 0.00 0.00 42.10 2.45
2135 2477 0.865111 CGTCACGCAAAAGTGGATCA 59.135 50.000 0.00 0.00 42.10 2.92
2136 2478 3.657537 CGTCACGCAAAAGTGGATC 57.342 52.632 0.00 0.00 42.10 3.36
2148 2490 1.654105 GTCTTAACCATGAGCGTCACG 59.346 52.381 0.00 0.00 0.00 4.35
2149 2491 1.654105 CGTCTTAACCATGAGCGTCAC 59.346 52.381 0.00 0.00 0.00 3.67
2150 2492 1.271379 ACGTCTTAACCATGAGCGTCA 59.729 47.619 0.00 0.00 0.00 4.35
2151 2493 1.992170 ACGTCTTAACCATGAGCGTC 58.008 50.000 0.00 0.00 0.00 5.19
2152 2494 2.066262 CAACGTCTTAACCATGAGCGT 58.934 47.619 0.00 0.00 30.54 5.07
2153 2495 2.066262 ACAACGTCTTAACCATGAGCG 58.934 47.619 0.00 0.00 0.00 5.03
2154 2496 3.064207 TCACAACGTCTTAACCATGAGC 58.936 45.455 0.00 0.00 0.00 4.26
2155 2497 6.330278 TCTATCACAACGTCTTAACCATGAG 58.670 40.000 0.00 0.00 0.00 2.90
2156 2498 6.275494 TCTATCACAACGTCTTAACCATGA 57.725 37.500 0.00 0.00 0.00 3.07
2157 2499 7.096023 GCTATCTATCACAACGTCTTAACCATG 60.096 40.741 0.00 0.00 0.00 3.66
2158 2500 6.924060 GCTATCTATCACAACGTCTTAACCAT 59.076 38.462 0.00 0.00 0.00 3.55
2159 2501 6.127563 TGCTATCTATCACAACGTCTTAACCA 60.128 38.462 0.00 0.00 0.00 3.67
2160 2502 6.270815 TGCTATCTATCACAACGTCTTAACC 58.729 40.000 0.00 0.00 0.00 2.85
2161 2503 7.648112 TCATGCTATCTATCACAACGTCTTAAC 59.352 37.037 0.00 0.00 0.00 2.01
2162 2504 7.648112 GTCATGCTATCTATCACAACGTCTTAA 59.352 37.037 0.00 0.00 0.00 1.85
2163 2505 7.139392 GTCATGCTATCTATCACAACGTCTTA 58.861 38.462 0.00 0.00 0.00 2.10
2164 2506 5.980116 GTCATGCTATCTATCACAACGTCTT 59.020 40.000 0.00 0.00 0.00 3.01
2165 2507 5.524284 GTCATGCTATCTATCACAACGTCT 58.476 41.667 0.00 0.00 0.00 4.18
2166 2508 4.380087 CGTCATGCTATCTATCACAACGTC 59.620 45.833 0.00 0.00 0.00 4.34
2167 2509 4.290969 CGTCATGCTATCTATCACAACGT 58.709 43.478 0.00 0.00 0.00 3.99
2168 2510 3.120286 GCGTCATGCTATCTATCACAACG 59.880 47.826 0.00 0.00 41.73 4.10
2169 2511 3.430218 GGCGTCATGCTATCTATCACAAC 59.570 47.826 0.00 0.00 45.43 3.32
2170 2512 3.554960 GGGCGTCATGCTATCTATCACAA 60.555 47.826 0.00 0.00 45.43 3.33
2171 2513 2.029020 GGGCGTCATGCTATCTATCACA 60.029 50.000 0.00 0.00 45.43 3.58
2172 2514 2.232452 AGGGCGTCATGCTATCTATCAC 59.768 50.000 0.00 0.00 45.43 3.06
2173 2515 2.529632 AGGGCGTCATGCTATCTATCA 58.470 47.619 0.00 0.00 45.43 2.15
2174 2516 3.181485 GGTAGGGCGTCATGCTATCTATC 60.181 52.174 0.00 0.00 45.43 2.08
2175 2517 2.761208 GGTAGGGCGTCATGCTATCTAT 59.239 50.000 0.00 0.00 45.43 1.98
2176 2518 2.168496 GGTAGGGCGTCATGCTATCTA 58.832 52.381 0.00 0.00 45.43 1.98
2177 2519 0.969894 GGTAGGGCGTCATGCTATCT 59.030 55.000 0.00 0.00 45.43 1.98
2178 2520 0.037232 GGGTAGGGCGTCATGCTATC 60.037 60.000 0.00 0.00 45.43 2.08
2179 2521 1.816863 CGGGTAGGGCGTCATGCTAT 61.817 60.000 0.00 0.00 45.43 2.97
2180 2522 2.495409 CGGGTAGGGCGTCATGCTA 61.495 63.158 0.00 0.00 45.43 3.49
2181 2523 3.849951 CGGGTAGGGCGTCATGCT 61.850 66.667 0.00 0.00 45.43 3.79
2182 2524 4.157120 ACGGGTAGGGCGTCATGC 62.157 66.667 0.00 0.00 45.38 4.06
2183 2525 2.202878 CACGGGTAGGGCGTCATG 60.203 66.667 0.00 0.00 0.00 3.07
2184 2526 2.682494 ACACGGGTAGGGCGTCAT 60.682 61.111 0.00 0.00 0.00 3.06
2185 2527 3.376078 GACACGGGTAGGGCGTCA 61.376 66.667 0.00 0.00 0.00 4.35
2186 2528 4.487412 CGACACGGGTAGGGCGTC 62.487 72.222 0.00 0.00 0.00 5.19
2200 2542 2.044806 ATGGACCCTAGCATGGCGAC 62.045 60.000 0.00 0.00 0.00 5.19
2201 2543 1.344953 AATGGACCCTAGCATGGCGA 61.345 55.000 0.00 0.00 0.00 5.54
2202 2544 0.466189 AAATGGACCCTAGCATGGCG 60.466 55.000 0.00 0.00 0.00 5.69
2203 2545 1.035139 CAAATGGACCCTAGCATGGC 58.965 55.000 0.00 0.00 0.00 4.40
2204 2546 1.035139 GCAAATGGACCCTAGCATGG 58.965 55.000 0.00 0.00 0.00 3.66
2205 2547 1.766494 TGCAAATGGACCCTAGCATG 58.234 50.000 0.00 0.00 0.00 4.06
2206 2548 2.091720 TCATGCAAATGGACCCTAGCAT 60.092 45.455 0.00 5.32 42.82 3.79
2207 2549 1.284491 TCATGCAAATGGACCCTAGCA 59.716 47.619 0.00 0.00 36.34 3.49
2208 2550 1.678101 GTCATGCAAATGGACCCTAGC 59.322 52.381 0.00 0.00 0.00 3.42
2209 2551 1.942657 CGTCATGCAAATGGACCCTAG 59.057 52.381 0.00 0.00 0.00 3.02
2210 2552 2.016604 GCGTCATGCAAATGGACCCTA 61.017 52.381 0.00 0.00 45.45 3.53
2211 2553 1.315257 GCGTCATGCAAATGGACCCT 61.315 55.000 0.00 0.00 45.45 4.34
2212 2554 1.139520 GCGTCATGCAAATGGACCC 59.860 57.895 0.00 0.00 45.45 4.46
2213 2555 4.792106 GCGTCATGCAAATGGACC 57.208 55.556 0.00 0.00 45.45 4.46
2223 2565 4.838152 CCTGACCCGGGCGTCATG 62.838 72.222 24.08 11.32 41.78 3.07
2235 2577 4.966787 TGGTTTGGGCGCCCTGAC 62.967 66.667 43.34 36.54 36.94 3.51
2236 2578 4.659172 CTGGTTTGGGCGCCCTGA 62.659 66.667 43.34 29.90 36.94 3.86
2244 2586 4.740822 CTCGCCCCCTGGTTTGGG 62.741 72.222 2.34 2.34 46.68 4.12
2245 2587 3.646715 TCTCGCCCCCTGGTTTGG 61.647 66.667 0.00 0.00 0.00 3.28
2246 2588 2.359975 GTCTCGCCCCCTGGTTTG 60.360 66.667 0.00 0.00 0.00 2.93
2247 2589 2.457323 TTGTCTCGCCCCCTGGTTT 61.457 57.895 0.00 0.00 0.00 3.27
2248 2590 2.852075 TTGTCTCGCCCCCTGGTT 60.852 61.111 0.00 0.00 0.00 3.67
2249 2591 3.637273 GTTGTCTCGCCCCCTGGT 61.637 66.667 0.00 0.00 0.00 4.00
2250 2592 2.971598 ATGTTGTCTCGCCCCCTGG 61.972 63.158 0.00 0.00 0.00 4.45
2251 2593 1.746615 CATGTTGTCTCGCCCCCTG 60.747 63.158 0.00 0.00 0.00 4.45
2252 2594 1.918293 TCATGTTGTCTCGCCCCCT 60.918 57.895 0.00 0.00 0.00 4.79
2253 2595 1.745489 GTCATGTTGTCTCGCCCCC 60.745 63.158 0.00 0.00 0.00 5.40
2254 2596 1.003839 TGTCATGTTGTCTCGCCCC 60.004 57.895 0.00 0.00 0.00 5.80
2255 2597 1.298859 GGTGTCATGTTGTCTCGCCC 61.299 60.000 0.00 0.00 0.00 6.13
2256 2598 1.298859 GGGTGTCATGTTGTCTCGCC 61.299 60.000 0.00 0.00 0.00 5.54
2257 2599 0.602638 TGGGTGTCATGTTGTCTCGC 60.603 55.000 0.00 0.00 0.00 5.03
2258 2600 1.877637 TTGGGTGTCATGTTGTCTCG 58.122 50.000 0.00 0.00 0.00 4.04
2259 2601 2.293399 GGTTTGGGTGTCATGTTGTCTC 59.707 50.000 0.00 0.00 0.00 3.36
2260 2602 2.306847 GGTTTGGGTGTCATGTTGTCT 58.693 47.619 0.00 0.00 0.00 3.41
2261 2603 2.028130 TGGTTTGGGTGTCATGTTGTC 58.972 47.619 0.00 0.00 0.00 3.18
2262 2604 2.151502 TGGTTTGGGTGTCATGTTGT 57.848 45.000 0.00 0.00 0.00 3.32
2263 2605 2.224018 CCTTGGTTTGGGTGTCATGTTG 60.224 50.000 0.00 0.00 0.00 3.33
2264 2606 2.038659 CCTTGGTTTGGGTGTCATGTT 58.961 47.619 0.00 0.00 0.00 2.71
2265 2607 1.703411 CCTTGGTTTGGGTGTCATGT 58.297 50.000 0.00 0.00 0.00 3.21
2266 2608 0.968405 CCCTTGGTTTGGGTGTCATG 59.032 55.000 0.00 0.00 39.82 3.07
2267 2609 0.178935 CCCCTTGGTTTGGGTGTCAT 60.179 55.000 0.00 0.00 43.09 3.06
2268 2610 1.231641 CCCCTTGGTTTGGGTGTCA 59.768 57.895 0.00 0.00 43.09 3.58
2269 2611 0.105913 TTCCCCTTGGTTTGGGTGTC 60.106 55.000 0.00 0.00 43.09 3.67
2270 2612 0.397957 GTTCCCCTTGGTTTGGGTGT 60.398 55.000 0.00 0.00 43.09 4.16
2271 2613 1.460273 CGTTCCCCTTGGTTTGGGTG 61.460 60.000 0.00 0.00 43.09 4.61
2272 2614 1.152631 CGTTCCCCTTGGTTTGGGT 60.153 57.895 0.00 0.00 43.09 4.51
2273 2615 0.893727 CTCGTTCCCCTTGGTTTGGG 60.894 60.000 0.00 0.00 44.19 4.12
2274 2616 0.179001 ACTCGTTCCCCTTGGTTTGG 60.179 55.000 0.00 0.00 0.00 3.28
2275 2617 1.687563 AACTCGTTCCCCTTGGTTTG 58.312 50.000 0.00 0.00 0.00 2.93
2276 2618 2.304092 GAAACTCGTTCCCCTTGGTTT 58.696 47.619 0.00 0.00 0.00 3.27
2277 2619 1.977056 GAAACTCGTTCCCCTTGGTT 58.023 50.000 0.00 0.00 0.00 3.67
2278 2620 3.719816 GAAACTCGTTCCCCTTGGT 57.280 52.632 0.00 0.00 0.00 3.67
2297 2639 3.118775 TGAATCTACATGTGTTCCCGGAG 60.119 47.826 9.11 0.00 0.00 4.63
2298 2640 2.835156 TGAATCTACATGTGTTCCCGGA 59.165 45.455 9.11 0.00 0.00 5.14
2299 2641 3.118775 TCTGAATCTACATGTGTTCCCGG 60.119 47.826 9.11 0.00 0.00 5.73
2300 2642 4.123497 TCTGAATCTACATGTGTTCCCG 57.877 45.455 9.11 4.96 0.00 5.14
2301 2643 7.020914 GATTTCTGAATCTACATGTGTTCCC 57.979 40.000 9.11 0.00 38.87 3.97
2314 2656 8.637986 AGATAGTCACCACTAGATTTCTGAATC 58.362 37.037 0.00 0.00 38.56 2.52
2315 2657 8.546083 AGATAGTCACCACTAGATTTCTGAAT 57.454 34.615 0.00 0.00 38.56 2.57
2316 2658 7.962995 AGATAGTCACCACTAGATTTCTGAA 57.037 36.000 0.00 0.00 38.56 3.02
2317 2659 8.275758 AGTAGATAGTCACCACTAGATTTCTGA 58.724 37.037 0.00 0.00 38.56 3.27
2318 2660 8.458573 AGTAGATAGTCACCACTAGATTTCTG 57.541 38.462 0.00 0.00 38.56 3.02
2319 2661 9.127277 GAAGTAGATAGTCACCACTAGATTTCT 57.873 37.037 0.00 0.00 38.56 2.52
2320 2662 8.354426 GGAAGTAGATAGTCACCACTAGATTTC 58.646 40.741 0.00 0.00 38.56 2.17
2321 2663 8.062536 AGGAAGTAGATAGTCACCACTAGATTT 58.937 37.037 0.00 0.00 38.56 2.17
2322 2664 7.588169 AGGAAGTAGATAGTCACCACTAGATT 58.412 38.462 0.00 0.00 38.56 2.40
2323 2665 7.156694 AGGAAGTAGATAGTCACCACTAGAT 57.843 40.000 0.00 0.00 38.56 1.98
2324 2666 6.409464 GGAGGAAGTAGATAGTCACCACTAGA 60.409 46.154 0.00 0.00 38.56 2.43
2325 2667 5.766174 GGAGGAAGTAGATAGTCACCACTAG 59.234 48.000 0.00 0.00 38.56 2.57
2326 2668 5.686913 CGGAGGAAGTAGATAGTCACCACTA 60.687 48.000 0.00 0.00 39.54 2.74
2327 2669 4.538738 GGAGGAAGTAGATAGTCACCACT 58.461 47.826 0.00 0.00 36.55 4.00
2328 2670 3.315749 CGGAGGAAGTAGATAGTCACCAC 59.684 52.174 0.00 0.00 0.00 4.16
2329 2671 3.053842 ACGGAGGAAGTAGATAGTCACCA 60.054 47.826 0.00 0.00 0.00 4.17
2330 2672 3.553904 ACGGAGGAAGTAGATAGTCACC 58.446 50.000 0.00 0.00 0.00 4.02
2331 2673 4.035441 GTGACGGAGGAAGTAGATAGTCAC 59.965 50.000 9.17 9.17 46.33 3.67
2332 2674 4.197750 GTGACGGAGGAAGTAGATAGTCA 58.802 47.826 0.00 0.00 35.38 3.41
2333 2675 4.197750 TGTGACGGAGGAAGTAGATAGTC 58.802 47.826 0.00 0.00 0.00 2.59
2334 2676 4.232188 TGTGACGGAGGAAGTAGATAGT 57.768 45.455 0.00 0.00 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.