Multiple sequence alignment - TraesCS5B01G211300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G211300 chr5B 100.000 3026 0 0 1 3026 382080381 382083406 0.000000e+00 5589.0
1 TraesCS5B01G211300 chr5B 93.182 88 6 0 2646 2733 707437483 707437570 2.450000e-26 130.0
2 TraesCS5B01G211300 chr5A 89.302 2234 141 43 36 2226 427821867 427819689 0.000000e+00 2712.0
3 TraesCS5B01G211300 chr5A 88.125 800 57 13 2231 3026 427819421 427818656 0.000000e+00 917.0
4 TraesCS5B01G211300 chr5A 93.182 88 6 0 2646 2733 386702629 386702716 2.450000e-26 130.0
5 TraesCS5B01G211300 chr5D 93.114 1365 54 21 702 2044 328724837 328726183 0.000000e+00 1964.0
6 TraesCS5B01G211300 chr5D 89.768 518 31 11 2414 2929 328727139 328727636 0.000000e+00 643.0
7 TraesCS5B01G211300 chr5D 82.127 442 56 17 22 447 328724300 328724734 1.030000e-94 357.0
8 TraesCS5B01G211300 chr5D 93.651 63 4 0 2334 2396 328726192 328726254 8.930000e-16 95.3
9 TraesCS5B01G211300 chr6A 91.892 185 15 0 2479 2663 100424040 100424224 2.990000e-65 259.0
10 TraesCS5B01G211300 chr2B 91.444 187 16 0 2477 2663 201248061 201247875 1.080000e-64 257.0
11 TraesCS5B01G211300 chr2B 85.892 241 30 3 2479 2717 134046900 134047138 1.390000e-63 254.0
12 TraesCS5B01G211300 chr2B 84.146 164 24 1 2744 2905 438744109 438743946 1.120000e-34 158.0
13 TraesCS5B01G211300 chr2B 83.537 164 24 2 2744 2905 654735513 654735675 1.880000e-32 150.0
14 TraesCS5B01G211300 chr2B 82.927 164 26 1 2744 2905 654656481 654656644 2.430000e-31 147.0
15 TraesCS5B01G211300 chr2B 82.927 164 26 1 2744 2905 654684753 654684916 2.430000e-31 147.0
16 TraesCS5B01G211300 chr2B 82.822 163 26 1 2744 2904 654706587 654706749 8.740000e-31 145.0
17 TraesCS5B01G211300 chr2B 93.182 88 6 0 2646 2733 23635611 23635524 2.450000e-26 130.0
18 TraesCS5B01G211300 chr1A 91.099 191 16 1 2471 2661 488974385 488974196 1.080000e-64 257.0
19 TraesCS5B01G211300 chr1A 89.730 185 19 0 2479 2663 371910757 371910573 1.400000e-58 237.0
20 TraesCS5B01G211300 chr1A 94.444 90 5 0 2646 2735 538638257 538638168 4.070000e-29 139.0
21 TraesCS5B01G211300 chrUn 90.526 190 17 1 2475 2663 32314303 32314114 1.800000e-62 250.0
22 TraesCS5B01G211300 chrUn 82.927 164 26 1 2744 2905 248129916 248130079 2.430000e-31 147.0
23 TraesCS5B01G211300 chr7D 90.270 185 18 0 2479 2663 519788568 519788384 3.010000e-60 243.0
24 TraesCS5B01G211300 chr6D 89.894 188 19 0 2476 2663 102120263 102120450 3.010000e-60 243.0
25 TraesCS5B01G211300 chr6D 84.211 247 34 4 2476 2719 454998341 454998585 5.040000e-58 235.0
26 TraesCS5B01G211300 chr7B 93.258 89 6 0 2646 2734 293130724 293130812 6.810000e-27 132.0
27 TraesCS5B01G211300 chr7B 93.182 88 6 0 2646 2733 726322038 726322125 2.450000e-26 130.0
28 TraesCS5B01G211300 chr2D 81.325 166 28 2 2740 2903 52950438 52950602 6.810000e-27 132.0
29 TraesCS5B01G211300 chr2A 93.258 89 6 0 2646 2734 775983525 775983613 6.810000e-27 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G211300 chr5B 382080381 382083406 3025 False 5589.000 5589 100.0000 1 3026 1 chr5B.!!$F1 3025
1 TraesCS5B01G211300 chr5A 427818656 427821867 3211 True 1814.500 2712 88.7135 36 3026 2 chr5A.!!$R1 2990
2 TraesCS5B01G211300 chr5D 328724300 328727636 3336 False 764.825 1964 89.6650 22 2929 4 chr5D.!!$F1 2907

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
865 903 0.10212 CACGAGATCCTCTGGACTGC 59.898 60.0 0.0 0.0 32.98 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2330 2659 0.110238 CCTGTCACAAACGCCAATCG 60.11 55.0 0.0 0.0 45.38 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.999229 GTGCTGTCATCGTAAGGAAAG 57.001 47.619 0.00 0.00 38.47 2.62
21 22 2.094417 GTGCTGTCATCGTAAGGAAAGC 59.906 50.000 0.00 0.00 38.47 3.51
22 23 1.666189 GCTGTCATCGTAAGGAAAGCC 59.334 52.381 0.00 0.00 38.47 4.35
24 25 2.932614 CTGTCATCGTAAGGAAAGCCTG 59.067 50.000 0.00 0.00 46.28 4.85
25 26 2.301870 TGTCATCGTAAGGAAAGCCTGT 59.698 45.455 0.00 0.00 46.28 4.00
26 27 3.244422 TGTCATCGTAAGGAAAGCCTGTT 60.244 43.478 0.00 0.00 46.28 3.16
89 90 5.842907 ACCTTGTTTGGTTATTTCTCTTGC 58.157 37.500 0.00 0.00 36.89 4.01
90 91 5.598417 ACCTTGTTTGGTTATTTCTCTTGCT 59.402 36.000 0.00 0.00 36.89 3.91
96 105 6.916360 TTGGTTATTTCTCTTGCTTTGGAT 57.084 33.333 0.00 0.00 0.00 3.41
98 107 6.690530 TGGTTATTTCTCTTGCTTTGGATTG 58.309 36.000 0.00 0.00 0.00 2.67
100 109 3.665745 TTTCTCTTGCTTTGGATTGGC 57.334 42.857 0.00 0.00 0.00 4.52
113 122 2.562298 TGGATTGGCGAATTGCTTCTTT 59.438 40.909 0.00 0.00 45.43 2.52
122 131 4.787882 GCGAATTGCTTCTTTGCTCTATCC 60.788 45.833 0.00 0.00 41.73 2.59
125 134 3.988976 TGCTTCTTTGCTCTATCCTGT 57.011 42.857 0.00 0.00 0.00 4.00
126 135 3.866651 TGCTTCTTTGCTCTATCCTGTC 58.133 45.455 0.00 0.00 0.00 3.51
128 137 4.080695 TGCTTCTTTGCTCTATCCTGTCAT 60.081 41.667 0.00 0.00 0.00 3.06
129 138 4.272991 GCTTCTTTGCTCTATCCTGTCATG 59.727 45.833 0.00 0.00 0.00 3.07
131 140 3.776969 TCTTTGCTCTATCCTGTCATGGT 59.223 43.478 0.00 0.00 0.00 3.55
132 141 3.548745 TTGCTCTATCCTGTCATGGTG 57.451 47.619 0.00 0.00 0.00 4.17
134 143 2.042464 GCTCTATCCTGTCATGGTGGA 58.958 52.381 0.00 0.00 0.00 4.02
135 144 2.435805 GCTCTATCCTGTCATGGTGGAA 59.564 50.000 6.39 0.00 33.20 3.53
136 145 3.118261 GCTCTATCCTGTCATGGTGGAAA 60.118 47.826 6.39 0.00 33.20 3.13
137 146 4.445448 GCTCTATCCTGTCATGGTGGAAAT 60.445 45.833 6.39 0.00 33.20 2.17
138 147 5.039920 TCTATCCTGTCATGGTGGAAATG 57.960 43.478 6.39 0.00 33.20 2.32
139 148 4.721274 TCTATCCTGTCATGGTGGAAATGA 59.279 41.667 6.39 0.00 33.20 2.57
140 149 3.354948 TCCTGTCATGGTGGAAATGAG 57.645 47.619 0.00 0.00 34.78 2.90
141 150 2.644299 TCCTGTCATGGTGGAAATGAGT 59.356 45.455 0.00 0.00 34.78 3.41
145 154 5.221501 CCTGTCATGGTGGAAATGAGTTTTT 60.222 40.000 0.00 0.00 34.78 1.94
146 155 6.015519 CCTGTCATGGTGGAAATGAGTTTTTA 60.016 38.462 0.00 0.00 34.78 1.52
147 156 7.353414 TGTCATGGTGGAAATGAGTTTTTAA 57.647 32.000 0.00 0.00 34.78 1.52
176 185 9.778741 ATAAGATGACGGCTTATATTTCAGAAA 57.221 29.630 0.00 0.00 36.93 2.52
179 188 7.933577 AGATGACGGCTTATATTTCAGAAATGA 59.066 33.333 17.38 3.80 32.38 2.57
213 224 2.520741 CGCCTGGGTTTGGTGGTT 60.521 61.111 0.00 0.00 0.00 3.67
214 225 2.131067 CGCCTGGGTTTGGTGGTTT 61.131 57.895 0.00 0.00 0.00 3.27
215 226 1.445518 GCCTGGGTTTGGTGGTTTG 59.554 57.895 0.00 0.00 0.00 2.93
216 227 2.038814 GCCTGGGTTTGGTGGTTTGG 62.039 60.000 0.00 0.00 0.00 3.28
217 228 0.689412 CCTGGGTTTGGTGGTTTGGT 60.689 55.000 0.00 0.00 0.00 3.67
218 229 0.463620 CTGGGTTTGGTGGTTTGGTG 59.536 55.000 0.00 0.00 0.00 4.17
219 230 0.978146 TGGGTTTGGTGGTTTGGTGG 60.978 55.000 0.00 0.00 0.00 4.61
226 237 1.826487 GTGGTTTGGTGGGCGTCTT 60.826 57.895 0.00 0.00 0.00 3.01
230 241 1.310904 GTTTGGTGGGCGTCTTAACA 58.689 50.000 0.00 0.00 0.00 2.41
238 250 1.737793 GGGCGTCTTAACATTGACAGG 59.262 52.381 0.00 0.00 33.18 4.00
247 269 6.366877 GTCTTAACATTGACAGGTAGCGTTTA 59.633 38.462 0.00 0.00 33.75 2.01
272 294 3.493503 ACGAAGATTGACCGTCTGAAAAC 59.506 43.478 0.00 0.00 29.82 2.43
278 300 3.823281 TGACCGTCTGAAAACAACCTA 57.177 42.857 0.00 0.00 0.00 3.08
280 302 2.804527 GACCGTCTGAAAACAACCTACC 59.195 50.000 0.00 0.00 0.00 3.18
292 315 4.986054 ACAACCTACCCATGTAAGAACA 57.014 40.909 0.00 0.00 40.69 3.18
308 331 7.205297 TGTAAGAACACTTGGTAGTTGTAGTC 58.795 38.462 0.00 0.00 30.26 2.59
320 343 1.067693 TTGTAGTCAACGAGCATGCG 58.932 50.000 13.01 0.84 37.29 4.73
328 353 0.462581 AACGAGCATGCGGACATCAT 60.463 50.000 13.01 0.00 32.87 2.45
361 386 6.207213 GTTGGTGAACGACTATACTGGATAG 58.793 44.000 5.33 5.33 43.01 2.08
395 420 3.957497 CCTCTGCTAGAGTTGGTGTATCT 59.043 47.826 10.86 0.00 40.72 1.98
464 491 4.316645 TGCTATTTGTGCGTTGTTACCTA 58.683 39.130 0.00 0.00 0.00 3.08
473 500 1.990563 CGTTGTTACCTAACCAGCTCG 59.009 52.381 0.00 0.00 35.37 5.03
474 501 1.730612 GTTGTTACCTAACCAGCTCGC 59.269 52.381 0.00 0.00 35.37 5.03
493 520 1.537135 GCTCTTGTCAGCGGGATAGAC 60.537 57.143 0.00 0.00 0.00 2.59
494 521 2.028130 CTCTTGTCAGCGGGATAGACT 58.972 52.381 0.00 0.00 33.56 3.24
495 522 1.751351 TCTTGTCAGCGGGATAGACTG 59.249 52.381 0.00 0.00 33.56 3.51
496 523 1.751351 CTTGTCAGCGGGATAGACTGA 59.249 52.381 0.00 0.00 38.09 3.41
505 534 3.372954 CGGGATAGACTGACAAATCGTC 58.627 50.000 0.00 0.00 45.61 4.20
506 535 3.066900 CGGGATAGACTGACAAATCGTCT 59.933 47.826 0.00 0.00 45.60 4.18
507 536 4.363999 GGGATAGACTGACAAATCGTCTG 58.636 47.826 5.56 0.00 45.60 3.51
537 566 5.034852 TCTGAAAGACAATGTCCAACAGA 57.965 39.130 20.84 20.84 38.67 3.41
538 567 5.436175 TCTGAAAGACAATGTCCAACAGAA 58.564 37.500 21.75 11.82 38.67 3.02
539 568 5.885352 TCTGAAAGACAATGTCCAACAGAAA 59.115 36.000 21.75 8.83 38.67 2.52
540 569 6.038603 TCTGAAAGACAATGTCCAACAGAAAG 59.961 38.462 21.75 7.79 38.67 2.62
541 570 5.885352 TGAAAGACAATGTCCAACAGAAAGA 59.115 36.000 10.12 0.00 32.18 2.52
542 571 5.757850 AAGACAATGTCCAACAGAAAGAC 57.242 39.130 10.12 0.00 32.18 3.01
543 572 4.780815 AGACAATGTCCAACAGAAAGACA 58.219 39.130 10.12 0.00 44.11 3.41
544 573 5.192927 AGACAATGTCCAACAGAAAGACAA 58.807 37.500 10.12 0.00 43.29 3.18
545 574 5.829924 AGACAATGTCCAACAGAAAGACAAT 59.170 36.000 10.12 0.00 43.29 2.71
546 575 5.835257 ACAATGTCCAACAGAAAGACAATG 58.165 37.500 6.02 6.02 43.73 2.82
547 576 5.360714 ACAATGTCCAACAGAAAGACAATGT 59.639 36.000 7.14 7.14 45.29 2.71
548 577 5.695851 ATGTCCAACAGAAAGACAATGTC 57.304 39.130 5.02 5.02 43.29 3.06
549 578 3.882888 TGTCCAACAGAAAGACAATGTCC 59.117 43.478 10.12 0.00 37.58 4.02
550 579 3.882888 GTCCAACAGAAAGACAATGTCCA 59.117 43.478 10.12 0.00 32.18 4.02
551 580 4.338118 GTCCAACAGAAAGACAATGTCCAA 59.662 41.667 10.12 0.00 32.18 3.53
552 581 4.338118 TCCAACAGAAAGACAATGTCCAAC 59.662 41.667 10.12 1.74 32.18 3.77
553 582 4.097741 CCAACAGAAAGACAATGTCCAACA 59.902 41.667 10.12 0.00 32.18 3.33
554 583 5.276270 CAACAGAAAGACAATGTCCAACAG 58.724 41.667 10.12 0.71 32.18 3.16
600 629 2.996631 AGGCAGAGCTTAACAAGGATG 58.003 47.619 0.00 0.00 0.00 3.51
605 634 4.559300 GCAGAGCTTAACAAGGATGCAAAA 60.559 41.667 0.00 0.00 32.79 2.44
606 635 5.531634 CAGAGCTTAACAAGGATGCAAAAA 58.468 37.500 0.00 0.00 0.00 1.94
641 670 0.744771 CTGGCGACCTAGCTTTTCCC 60.745 60.000 0.00 0.00 37.29 3.97
649 678 0.322816 CTAGCTTTTCCCAGCCTGCA 60.323 55.000 0.00 0.00 41.12 4.41
654 683 0.827507 TTTTCCCAGCCTGCAGTTCC 60.828 55.000 13.81 0.27 0.00 3.62
819 857 3.728718 CGAATCAAAACACAAAACCTCCG 59.271 43.478 0.00 0.00 0.00 4.63
865 903 0.102120 CACGAGATCCTCTGGACTGC 59.898 60.000 0.00 0.00 32.98 4.40
944 982 1.654954 CGTATATAGCCCGCTCCGCT 61.655 60.000 0.00 0.00 40.45 5.52
1245 1296 1.827789 GGTGCACAAGACCCAGCAA 60.828 57.895 20.43 0.00 38.91 3.91
1249 1300 0.819259 GCACAAGACCCAGCAACAGA 60.819 55.000 0.00 0.00 0.00 3.41
1262 1313 0.887836 CAACAGAAGCAGCAGAGGCA 60.888 55.000 0.00 0.00 44.61 4.75
1317 1374 2.037136 GCTCACCATCAAGTGCGCT 61.037 57.895 9.73 0.00 43.47 5.92
1584 1644 4.003788 CCGAGGGTGCACGACCTT 62.004 66.667 14.91 0.00 45.33 3.50
1993 2053 2.203788 TGGAGGAGCACCGGTTCT 60.204 61.111 6.41 6.41 41.83 3.01
2045 2105 3.751246 CGTGTGGGCTGGCATTGG 61.751 66.667 2.88 0.00 0.00 3.16
2115 2181 4.020617 CCTCGTGGGGCTGCTTCA 62.021 66.667 0.00 0.00 0.00 3.02
2121 2187 2.892425 GGGGCTGCTTCATCGACG 60.892 66.667 0.00 0.00 0.00 5.12
2122 2188 2.125512 GGGCTGCTTCATCGACGT 60.126 61.111 0.00 0.00 0.00 4.34
2123 2189 1.141019 GGGCTGCTTCATCGACGTA 59.859 57.895 0.00 0.00 0.00 3.57
2124 2190 1.146358 GGGCTGCTTCATCGACGTAC 61.146 60.000 0.00 0.00 0.00 3.67
2125 2191 1.472276 GGCTGCTTCATCGACGTACG 61.472 60.000 15.01 15.01 44.09 3.67
2151 2217 3.444618 GCTTTTGTAGCTTTGCATTGC 57.555 42.857 0.46 0.46 46.77 3.56
2163 2229 0.818938 TGCATTGCGCTCCATGAATT 59.181 45.000 9.73 0.00 43.06 2.17
2167 2233 3.374745 CATTGCGCTCCATGAATTAACC 58.625 45.455 9.73 0.00 0.00 2.85
2193 2259 2.233605 TATCCGCTTGTGTGGTCCGG 62.234 60.000 0.00 0.00 43.94 5.14
2222 2288 0.737715 AGATGTGGCGCGAGAGAAAC 60.738 55.000 12.10 0.00 0.00 2.78
2271 2600 1.648504 TGCAGCGAGTCATCAATCAG 58.351 50.000 0.00 0.00 0.00 2.90
2309 2638 6.672218 TGAGGGTTTCTAGTTGAAGATGGATA 59.328 38.462 0.00 0.00 35.89 2.59
2316 2645 9.466497 TTTCTAGTTGAAGATGGATAGCAAAAT 57.534 29.630 0.00 0.00 35.89 1.82
2324 2653 5.950023 AGATGGATAGCAAAATCTGGATGT 58.050 37.500 0.00 0.00 0.00 3.06
2325 2654 6.371278 AGATGGATAGCAAAATCTGGATGTT 58.629 36.000 0.00 0.00 0.00 2.71
2326 2655 6.489361 AGATGGATAGCAAAATCTGGATGTTC 59.511 38.462 0.00 0.00 0.00 3.18
2327 2656 5.508567 TGGATAGCAAAATCTGGATGTTCA 58.491 37.500 0.00 0.00 0.00 3.18
2328 2657 5.357878 TGGATAGCAAAATCTGGATGTTCAC 59.642 40.000 0.00 0.00 0.00 3.18
2329 2658 5.357878 GGATAGCAAAATCTGGATGTTCACA 59.642 40.000 0.00 0.00 0.00 3.58
2330 2659 4.510038 AGCAAAATCTGGATGTTCACAC 57.490 40.909 0.00 0.00 0.00 3.82
2331 2660 3.058016 AGCAAAATCTGGATGTTCACACG 60.058 43.478 0.00 0.00 0.00 4.49
2332 2661 3.058293 GCAAAATCTGGATGTTCACACGA 60.058 43.478 0.00 0.00 0.00 4.35
2335 2664 4.952262 AATCTGGATGTTCACACGATTG 57.048 40.909 0.00 0.00 0.00 2.67
2357 2686 1.872237 CGTTTGTGACAGGTCGTCCAT 60.872 52.381 0.51 0.00 44.71 3.41
2386 2715 3.244735 GGAGCAAGTTCTTTTCTCCTCCT 60.245 47.826 16.52 0.00 40.02 3.69
2407 2736 1.896220 TTCGCTTTTCATGTGCTCCT 58.104 45.000 0.00 0.00 0.00 3.69
2430 3626 6.763135 CCTGCTGTTTCTATTTACTCTGCATA 59.237 38.462 0.00 0.00 0.00 3.14
2493 3689 5.083533 CTCTAAAGAGTGAAGTGCATCCT 57.916 43.478 0.00 0.00 37.40 3.24
2494 3690 6.214191 CTCTAAAGAGTGAAGTGCATCCTA 57.786 41.667 0.00 0.00 37.40 2.94
2495 3691 6.214191 TCTAAAGAGTGAAGTGCATCCTAG 57.786 41.667 0.00 0.00 0.00 3.02
2496 3692 3.902881 AAGAGTGAAGTGCATCCTAGG 57.097 47.619 0.82 0.82 0.00 3.02
2497 3693 2.826488 AGAGTGAAGTGCATCCTAGGT 58.174 47.619 9.08 0.00 0.00 3.08
2498 3694 2.763448 AGAGTGAAGTGCATCCTAGGTC 59.237 50.000 9.08 0.00 0.00 3.85
2499 3695 1.834263 AGTGAAGTGCATCCTAGGTCC 59.166 52.381 9.08 0.00 0.00 4.46
2512 3708 6.632672 GCATCCTAGGTCCTCAAACTATTTCA 60.633 42.308 9.08 0.00 0.00 2.69
2548 3744 4.762251 AGGTCCTCAAACTATGAAAAGTGC 59.238 41.667 0.00 0.00 37.67 4.40
2556 3752 6.714810 TCAAACTATGAAAAGTGCCATGTAGT 59.285 34.615 0.00 0.00 34.30 2.73
2561 3757 4.072131 TGAAAAGTGCCATGTAGTTCCTC 58.928 43.478 0.00 0.00 0.00 3.71
2562 3758 3.788227 AAAGTGCCATGTAGTTCCTCA 57.212 42.857 0.00 0.00 0.00 3.86
2622 3818 6.875726 TGACACCTCTGAAATAGTTCAATGAG 59.124 38.462 7.08 10.42 43.18 2.90
2627 3823 7.044181 CCTCTGAAATAGTTCAATGAGCTACA 58.956 38.462 8.96 2.93 43.18 2.74
2632 3828 6.834959 AATAGTTCAATGAGCTACATGACG 57.165 37.500 8.96 0.00 39.39 4.35
2658 3854 6.886459 CCTTTGAAATAGTTTGAGGATCTGGA 59.114 38.462 0.00 0.00 34.92 3.86
2676 3872 9.057089 GGATCTGGATGACGATTTTTATAGTTT 57.943 33.333 0.00 0.00 0.00 2.66
2681 3877 9.893634 TGGATGACGATTTTTATAGTTTAAGGA 57.106 29.630 0.00 0.00 0.00 3.36
2684 3880 9.901172 ATGACGATTTTTATAGTTTAAGGACCT 57.099 29.630 0.00 0.00 0.00 3.85
2687 3883 9.305925 ACGATTTTTATAGTTTAAGGACCTACG 57.694 33.333 0.00 0.00 0.00 3.51
2688 3884 9.305925 CGATTTTTATAGTTTAAGGACCTACGT 57.694 33.333 0.00 0.00 0.00 3.57
2698 3894 1.632409 AGGACCTACGTGACACCTCTA 59.368 52.381 0.00 0.00 0.00 2.43
2719 3915 7.286215 TCTAAAATAGTTCGAGGACCTATGG 57.714 40.000 0.00 0.00 0.00 2.74
2886 4084 9.984190 TTGGTCAAAGTTTACAAAGTTTTACTT 57.016 25.926 14.39 0.00 40.80 2.24
2887 4085 9.413048 TGGTCAAAGTTTACAAAGTTTTACTTG 57.587 29.630 14.39 3.40 38.66 3.16
2908 4107 5.459536 TGAGACGAAGCTAATATGCAGAT 57.540 39.130 0.00 0.00 34.99 2.90
2929 4128 3.674997 TCAGTACAATGGTTTCTGGAGC 58.325 45.455 0.00 0.00 32.46 4.70
2944 4143 5.248870 TCTGGAGCTGTTGTTTTCTTTTC 57.751 39.130 0.00 0.00 0.00 2.29
2965 4166 9.346725 CTTTTCTCTAAATGAATTACTTGCACC 57.653 33.333 0.00 0.00 0.00 5.01
2966 4167 7.391148 TTCTCTAAATGAATTACTTGCACCC 57.609 36.000 0.00 0.00 0.00 4.61
2967 4168 5.885912 TCTCTAAATGAATTACTTGCACCCC 59.114 40.000 0.00 0.00 0.00 4.95
2968 4169 4.953579 TCTAAATGAATTACTTGCACCCCC 59.046 41.667 0.00 0.00 0.00 5.40
2998 4199 5.663556 CCCCCTTCAAGTAGAGAGTTTATCT 59.336 44.000 0.00 0.00 42.61 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.094417 GCTTTCCTTACGATGACAGCAC 59.906 50.000 0.00 0.00 35.05 4.40
1 2 2.346803 GCTTTCCTTACGATGACAGCA 58.653 47.619 0.00 0.00 35.05 4.41
2 3 1.666189 GGCTTTCCTTACGATGACAGC 59.334 52.381 0.00 0.00 34.37 4.40
3 4 2.932614 CAGGCTTTCCTTACGATGACAG 59.067 50.000 0.00 0.00 41.93 3.51
4 5 2.301870 ACAGGCTTTCCTTACGATGACA 59.698 45.455 0.00 0.00 41.93 3.58
5 6 2.973945 ACAGGCTTTCCTTACGATGAC 58.026 47.619 0.00 0.00 41.93 3.06
6 7 3.260884 AGAACAGGCTTTCCTTACGATGA 59.739 43.478 0.00 0.00 41.93 2.92
7 8 3.372206 CAGAACAGGCTTTCCTTACGATG 59.628 47.826 0.00 0.00 41.93 3.84
8 9 3.600388 CAGAACAGGCTTTCCTTACGAT 58.400 45.455 0.00 0.00 41.93 3.73
9 10 2.870435 GCAGAACAGGCTTTCCTTACGA 60.870 50.000 0.00 0.00 41.93 3.43
10 11 1.464997 GCAGAACAGGCTTTCCTTACG 59.535 52.381 0.00 0.00 41.93 3.18
11 12 2.744741 GAGCAGAACAGGCTTTCCTTAC 59.255 50.000 0.00 0.00 41.93 2.34
12 13 2.371841 TGAGCAGAACAGGCTTTCCTTA 59.628 45.455 0.00 0.00 41.93 2.69
13 14 1.143684 TGAGCAGAACAGGCTTTCCTT 59.856 47.619 0.00 0.00 41.93 3.36
14 15 0.767375 TGAGCAGAACAGGCTTTCCT 59.233 50.000 0.00 0.00 45.66 3.36
15 16 1.471684 CATGAGCAGAACAGGCTTTCC 59.528 52.381 0.00 0.00 42.78 3.13
16 17 2.095364 CACATGAGCAGAACAGGCTTTC 60.095 50.000 0.00 0.00 42.78 2.62
17 18 1.884579 CACATGAGCAGAACAGGCTTT 59.115 47.619 0.00 0.00 42.78 3.51
18 19 1.072806 TCACATGAGCAGAACAGGCTT 59.927 47.619 0.00 0.00 42.78 4.35
19 20 0.689055 TCACATGAGCAGAACAGGCT 59.311 50.000 0.00 0.00 46.07 4.58
20 21 1.198637 GTTCACATGAGCAGAACAGGC 59.801 52.381 0.00 0.00 40.89 4.85
21 22 2.775890 AGTTCACATGAGCAGAACAGG 58.224 47.619 19.17 0.00 43.00 4.00
22 23 3.931468 CCTAGTTCACATGAGCAGAACAG 59.069 47.826 19.17 15.18 43.00 3.16
23 24 3.578282 TCCTAGTTCACATGAGCAGAACA 59.422 43.478 19.17 9.93 43.00 3.18
24 25 4.193826 TCCTAGTTCACATGAGCAGAAC 57.806 45.455 0.00 8.19 41.37 3.01
25 26 4.890158 TTCCTAGTTCACATGAGCAGAA 57.110 40.909 0.00 0.00 0.00 3.02
26 27 5.426689 AATTCCTAGTTCACATGAGCAGA 57.573 39.130 0.00 0.00 0.00 4.26
82 83 1.167851 CGCCAATCCAAAGCAAGAGA 58.832 50.000 0.00 0.00 0.00 3.10
88 89 1.001624 GCAATTCGCCAATCCAAAGC 58.998 50.000 0.00 0.00 32.94 3.51
89 90 2.660189 AGCAATTCGCCAATCCAAAG 57.340 45.000 0.00 0.00 44.04 2.77
90 91 2.562298 AGAAGCAATTCGCCAATCCAAA 59.438 40.909 0.00 0.00 44.04 3.28
96 105 1.340889 AGCAAAGAAGCAATTCGCCAA 59.659 42.857 0.00 0.00 44.04 4.52
98 107 1.200948 AGAGCAAAGAAGCAATTCGCC 59.799 47.619 0.00 0.00 44.04 5.54
100 109 4.574013 AGGATAGAGCAAAGAAGCAATTCG 59.426 41.667 0.00 0.00 36.85 3.34
113 122 1.764723 CCACCATGACAGGATAGAGCA 59.235 52.381 0.00 0.00 0.00 4.26
122 131 5.458041 AAAACTCATTTCCACCATGACAG 57.542 39.130 0.00 0.00 0.00 3.51
137 146 9.391006 AGCCGTCATCTTATTATTAAAAACTCA 57.609 29.630 0.00 0.00 0.00 3.41
166 175 8.632679 AGAAGCAAAACAGTCATTTCTGAAATA 58.367 29.630 14.78 2.52 38.63 1.40
168 177 6.866480 AGAAGCAAAACAGTCATTTCTGAAA 58.134 32.000 5.15 5.15 38.63 2.69
198 209 0.689412 ACCAAACCACCAAACCCAGG 60.689 55.000 0.00 0.00 0.00 4.45
201 212 1.691195 CCCACCAAACCACCAAACCC 61.691 60.000 0.00 0.00 0.00 4.11
212 223 2.279935 ATGTTAAGACGCCCACCAAA 57.720 45.000 0.00 0.00 0.00 3.28
213 224 1.883275 CAATGTTAAGACGCCCACCAA 59.117 47.619 0.00 0.00 0.00 3.67
214 225 1.072489 TCAATGTTAAGACGCCCACCA 59.928 47.619 0.00 0.00 0.00 4.17
215 226 1.467342 GTCAATGTTAAGACGCCCACC 59.533 52.381 0.00 0.00 0.00 4.61
216 227 2.147958 TGTCAATGTTAAGACGCCCAC 58.852 47.619 0.00 0.00 37.58 4.61
217 228 2.422597 CTGTCAATGTTAAGACGCCCA 58.577 47.619 0.00 0.00 37.58 5.36
218 229 1.737793 CCTGTCAATGTTAAGACGCCC 59.262 52.381 0.00 0.00 37.58 6.13
219 230 2.423577 ACCTGTCAATGTTAAGACGCC 58.576 47.619 0.00 0.00 37.58 5.68
226 237 6.311935 GTGATAAACGCTACCTGTCAATGTTA 59.688 38.462 0.00 0.00 0.00 2.41
230 241 3.863424 CGTGATAAACGCTACCTGTCAAT 59.137 43.478 0.00 0.00 46.99 2.57
247 269 2.492088 TCAGACGGTCAATCTTCGTGAT 59.508 45.455 11.27 0.00 37.25 3.06
260 282 2.486013 GGGTAGGTTGTTTTCAGACGGT 60.486 50.000 0.00 0.00 0.00 4.83
264 286 4.447138 ACATGGGTAGGTTGTTTTCAGA 57.553 40.909 0.00 0.00 0.00 3.27
272 294 4.906618 AGTGTTCTTACATGGGTAGGTTG 58.093 43.478 0.00 0.00 36.50 3.77
278 300 3.876309 ACCAAGTGTTCTTACATGGGT 57.124 42.857 0.00 0.00 38.30 4.51
280 302 5.763204 ACAACTACCAAGTGTTCTTACATGG 59.237 40.000 0.00 0.00 39.37 3.66
308 331 1.349627 GATGTCCGCATGCTCGTTG 59.650 57.895 17.13 0.00 35.07 4.10
311 334 0.659427 AAATGATGTCCGCATGCTCG 59.341 50.000 17.13 5.67 35.07 5.03
312 335 1.268896 CCAAATGATGTCCGCATGCTC 60.269 52.381 17.13 6.53 35.07 4.26
320 343 1.133025 CAACCGAGCCAAATGATGTCC 59.867 52.381 0.00 0.00 0.00 4.02
328 353 1.440938 CGTTCACCAACCGAGCCAAA 61.441 55.000 0.00 0.00 0.00 3.28
365 390 3.570912 ACTCTAGCAGAGGAGTACTCC 57.429 52.381 31.29 31.29 46.45 3.85
366 391 3.630312 CCAACTCTAGCAGAGGAGTACTC 59.370 52.174 14.87 14.87 46.45 2.59
367 392 3.010808 ACCAACTCTAGCAGAGGAGTACT 59.989 47.826 14.88 0.00 46.45 2.73
368 393 3.129638 CACCAACTCTAGCAGAGGAGTAC 59.870 52.174 14.88 0.00 46.45 2.73
369 394 3.245300 ACACCAACTCTAGCAGAGGAGTA 60.245 47.826 14.88 0.00 46.45 2.59
370 395 2.175202 CACCAACTCTAGCAGAGGAGT 58.825 52.381 14.88 6.60 46.45 3.85
371 396 2.175202 ACACCAACTCTAGCAGAGGAG 58.825 52.381 14.88 6.07 46.45 3.69
372 397 2.310779 ACACCAACTCTAGCAGAGGA 57.689 50.000 14.88 0.00 46.45 3.71
373 398 3.957497 AGATACACCAACTCTAGCAGAGG 59.043 47.826 14.88 4.13 46.45 3.69
374 399 8.758256 TGTACAGATACACCAACTCTAGCAGAG 61.758 44.444 10.48 10.48 41.00 3.35
380 405 7.173032 TCTTCTGTACAGATACACCAACTCTA 58.827 38.462 25.68 5.71 36.34 2.43
395 420 6.070767 CCCTCCTAAGACAAATCTTCTGTACA 60.071 42.308 0.00 0.00 41.63 2.90
464 491 0.320247 CTGACAAGAGCGAGCTGGTT 60.320 55.000 0.84 0.00 0.00 3.67
473 500 0.747255 TCTATCCCGCTGACAAGAGC 59.253 55.000 0.00 0.00 35.46 4.09
474 501 2.028130 AGTCTATCCCGCTGACAAGAG 58.972 52.381 0.00 0.00 33.56 2.85
496 523 1.466167 GATGCTGCACAGACGATTTGT 59.534 47.619 3.57 0.00 0.00 2.83
505 534 2.148768 TGTCTTTCAGATGCTGCACAG 58.851 47.619 3.57 0.00 0.00 3.66
506 535 2.259266 TGTCTTTCAGATGCTGCACA 57.741 45.000 3.57 0.00 0.00 4.57
507 536 3.057736 ACATTGTCTTTCAGATGCTGCAC 60.058 43.478 3.57 0.00 0.00 4.57
511 540 4.025040 TGGACATTGTCTTTCAGATGCT 57.975 40.909 16.02 0.00 32.47 3.79
535 564 5.888161 AGTTTCTGTTGGACATTGTCTTTCT 59.112 36.000 16.02 1.22 32.47 2.52
537 566 5.652014 TCAGTTTCTGTTGGACATTGTCTTT 59.348 36.000 16.02 0.00 32.61 2.52
538 567 5.192927 TCAGTTTCTGTTGGACATTGTCTT 58.807 37.500 16.02 0.00 32.61 3.01
539 568 4.780815 TCAGTTTCTGTTGGACATTGTCT 58.219 39.130 16.02 0.00 32.61 3.41
540 569 5.455392 CATCAGTTTCTGTTGGACATTGTC 58.545 41.667 8.34 8.34 32.61 3.18
541 570 4.261741 GCATCAGTTTCTGTTGGACATTGT 60.262 41.667 9.03 0.00 33.34 2.71
542 571 4.232221 GCATCAGTTTCTGTTGGACATTG 58.768 43.478 9.03 0.00 33.34 2.82
543 572 3.256631 GGCATCAGTTTCTGTTGGACATT 59.743 43.478 9.03 0.00 33.34 2.71
544 573 2.821969 GGCATCAGTTTCTGTTGGACAT 59.178 45.455 9.03 0.00 33.34 3.06
545 574 2.229792 GGCATCAGTTTCTGTTGGACA 58.770 47.619 9.03 0.00 33.34 4.02
546 575 2.030805 GTGGCATCAGTTTCTGTTGGAC 60.031 50.000 0.00 0.00 33.34 4.02
547 576 2.229792 GTGGCATCAGTTTCTGTTGGA 58.770 47.619 0.00 0.00 33.34 3.53
548 577 1.270550 GGTGGCATCAGTTTCTGTTGG 59.729 52.381 0.00 0.00 33.34 3.77
549 578 1.270550 GGGTGGCATCAGTTTCTGTTG 59.729 52.381 0.00 4.16 35.15 3.33
550 579 1.620822 GGGTGGCATCAGTTTCTGTT 58.379 50.000 0.00 0.00 32.61 3.16
551 580 0.606401 CGGGTGGCATCAGTTTCTGT 60.606 55.000 0.00 0.00 32.61 3.41
552 581 1.308069 CCGGGTGGCATCAGTTTCTG 61.308 60.000 0.00 0.00 0.00 3.02
553 582 1.002134 CCGGGTGGCATCAGTTTCT 60.002 57.895 0.00 0.00 0.00 2.52
554 583 1.002624 TCCGGGTGGCATCAGTTTC 60.003 57.895 0.00 0.00 34.14 2.78
618 647 3.431766 GGAAAAGCTAGGTCGCCAGAATA 60.432 47.826 0.00 0.00 0.00 1.75
671 700 1.300620 CGAAAGTCGTGACAGGGCA 60.301 57.895 2.18 0.00 34.72 5.36
1006 1054 4.736896 GTCGTGTCCTCCGTGGCC 62.737 72.222 0.00 0.00 35.26 5.36
1238 1286 1.863662 CTGCTGCTTCTGTTGCTGGG 61.864 60.000 0.00 0.00 0.00 4.45
1245 1296 1.003597 CTGCCTCTGCTGCTTCTGT 60.004 57.895 0.00 0.00 38.71 3.41
1249 1300 2.046120 GCTCTGCCTCTGCTGCTT 60.046 61.111 0.00 0.00 38.71 3.91
1306 1363 2.816958 CCGAGCAGCGCACTTGAT 60.817 61.111 11.47 0.00 39.11 2.57
1329 1386 2.997897 GTCCTCCTCACCTGCGGT 60.998 66.667 0.00 0.00 35.62 5.68
1398 1455 3.324930 CTCCTGGGCAGTGGCAGA 61.325 66.667 19.48 10.68 43.71 4.26
1982 2042 1.296715 GTCATGGAGAACCGGTGCT 59.703 57.895 17.45 17.45 39.42 4.40
1993 2053 2.662596 GACTGCCCGTGTCATGGA 59.337 61.111 13.05 0.00 34.80 3.41
2030 2090 3.908904 ATGCCAATGCCAGCCCACA 62.909 57.895 0.00 0.00 36.33 4.17
2098 2164 3.335356 ATGAAGCAGCCCCACGAGG 62.335 63.158 0.00 0.00 0.00 4.63
2108 2174 1.472276 GCCGTACGTCGATGAAGCAG 61.472 60.000 15.21 0.00 42.86 4.24
2115 2181 2.279252 GCATGGCCGTACGTCGAT 60.279 61.111 15.21 0.28 42.86 3.59
2121 2187 2.825086 CTACAAAAGCATGGCCGTAC 57.175 50.000 0.00 0.00 0.00 3.67
2146 2212 3.067180 AGGTTAATTCATGGAGCGCAATG 59.933 43.478 11.47 10.85 0.00 2.82
2151 2217 4.693283 TCTACAGGTTAATTCATGGAGCG 58.307 43.478 0.00 0.00 31.12 5.03
2163 2229 4.647853 ACACAAGCGGATATCTACAGGTTA 59.352 41.667 2.05 0.00 0.00 2.85
2167 2233 3.181475 ACCACACAAGCGGATATCTACAG 60.181 47.826 2.05 0.00 0.00 2.74
2193 2259 1.400242 GCGCCACATCTCTCAAACAAC 60.400 52.381 0.00 0.00 0.00 3.32
2222 2288 5.390613 AGAAATTTGTGATTTAAGACCGCG 58.609 37.500 0.00 0.00 0.00 6.46
2226 2292 6.612306 AGGCGAGAAATTTGTGATTTAAGAC 58.388 36.000 0.00 0.00 0.00 3.01
2227 2293 6.817765 AGGCGAGAAATTTGTGATTTAAGA 57.182 33.333 0.00 0.00 0.00 2.10
2228 2294 7.166473 GCATAGGCGAGAAATTTGTGATTTAAG 59.834 37.037 0.00 0.00 0.00 1.85
2309 2638 3.058016 CGTGTGAACATCCAGATTTTGCT 60.058 43.478 0.00 0.00 0.00 3.91
2316 2645 2.698803 CCAATCGTGTGAACATCCAGA 58.301 47.619 0.00 0.00 0.00 3.86
2330 2659 0.110238 CCTGTCACAAACGCCAATCG 60.110 55.000 0.00 0.00 45.38 3.34
2331 2660 0.951558 ACCTGTCACAAACGCCAATC 59.048 50.000 0.00 0.00 0.00 2.67
2332 2661 0.951558 GACCTGTCACAAACGCCAAT 59.048 50.000 0.00 0.00 0.00 3.16
2335 2664 1.885850 ACGACCTGTCACAAACGCC 60.886 57.895 0.00 0.00 0.00 5.68
2357 2686 2.452600 AAGAACTTGCTCCAAACCCA 57.547 45.000 0.00 0.00 0.00 4.51
2386 2715 2.622942 AGGAGCACATGAAAAGCGAAAA 59.377 40.909 0.00 0.00 0.00 2.29
2407 2736 8.737168 AATATGCAGAGTAAATAGAAACAGCA 57.263 30.769 0.00 0.00 0.00 4.41
2493 3689 6.940298 CACCTTTGAAATAGTTTGAGGACCTA 59.060 38.462 0.00 0.00 0.00 3.08
2494 3690 5.770162 CACCTTTGAAATAGTTTGAGGACCT 59.230 40.000 0.00 0.00 0.00 3.85
2495 3691 5.535030 ACACCTTTGAAATAGTTTGAGGACC 59.465 40.000 7.03 0.00 0.00 4.46
2496 3692 6.262273 TGACACCTTTGAAATAGTTTGAGGAC 59.738 38.462 7.03 1.39 0.00 3.85
2497 3693 6.361433 TGACACCTTTGAAATAGTTTGAGGA 58.639 36.000 7.03 0.00 0.00 3.71
2498 3694 6.633500 TGACACCTTTGAAATAGTTTGAGG 57.367 37.500 0.00 0.00 0.00 3.86
2499 3695 6.638468 GCTTGACACCTTTGAAATAGTTTGAG 59.362 38.462 0.00 0.00 0.00 3.02
2512 3708 0.846693 AGGACCTGCTTGACACCTTT 59.153 50.000 0.00 0.00 0.00 3.11
2548 3744 6.434028 TCAAGGATTTTTGAGGAACTACATGG 59.566 38.462 0.00 0.00 41.55 3.66
2556 3752 7.889873 TTACACTTCAAGGATTTTTGAGGAA 57.110 32.000 5.10 0.00 38.25 3.36
2561 3757 9.965824 ACACTTATTACACTTCAAGGATTTTTG 57.034 29.630 0.00 0.00 0.00 2.44
2562 3758 9.965824 CACACTTATTACACTTCAAGGATTTTT 57.034 29.630 0.00 0.00 0.00 1.94
2622 3818 3.764885 ATTTCAAAGGCGTCATGTAGC 57.235 42.857 6.61 6.61 0.00 3.58
2627 3823 5.106157 CCTCAAACTATTTCAAAGGCGTCAT 60.106 40.000 0.00 0.00 0.00 3.06
2632 3828 6.405176 CCAGATCCTCAAACTATTTCAAAGGC 60.405 42.308 0.00 0.00 0.00 4.35
2658 3854 9.901172 AGGTCCTTAAACTATAAAAATCGTCAT 57.099 29.630 0.00 0.00 0.00 3.06
2676 3872 2.040813 AGAGGTGTCACGTAGGTCCTTA 59.959 50.000 0.00 0.00 0.00 2.69
2677 3873 1.203025 AGAGGTGTCACGTAGGTCCTT 60.203 52.381 0.00 0.00 0.00 3.36
2680 3876 4.510038 TTTTAGAGGTGTCACGTAGGTC 57.490 45.455 0.00 0.00 0.00 3.85
2681 3877 5.713861 ACTATTTTAGAGGTGTCACGTAGGT 59.286 40.000 0.00 0.00 0.00 3.08
2682 3878 6.205101 ACTATTTTAGAGGTGTCACGTAGG 57.795 41.667 0.00 0.00 0.00 3.18
2683 3879 6.468319 CGAACTATTTTAGAGGTGTCACGTAG 59.532 42.308 0.00 0.00 0.00 3.51
2684 3880 6.149308 TCGAACTATTTTAGAGGTGTCACGTA 59.851 38.462 0.00 0.00 0.00 3.57
2685 3881 5.048504 TCGAACTATTTTAGAGGTGTCACGT 60.049 40.000 0.00 0.00 0.00 4.49
2686 3882 5.396484 TCGAACTATTTTAGAGGTGTCACG 58.604 41.667 0.00 0.00 0.00 4.35
2687 3883 5.805994 CCTCGAACTATTTTAGAGGTGTCAC 59.194 44.000 5.30 0.00 42.48 3.67
2688 3884 5.713389 TCCTCGAACTATTTTAGAGGTGTCA 59.287 40.000 11.49 0.00 46.27 3.58
2698 3894 5.671493 CACCATAGGTCCTCGAACTATTTT 58.329 41.667 0.00 0.00 39.24 1.82
2873 4071 5.585047 AGCTTCGTCTCAAGTAAAACTTTGT 59.415 36.000 0.00 0.00 36.03 2.83
2886 4084 4.918810 TCTGCATATTAGCTTCGTCTCA 57.081 40.909 0.00 0.00 34.99 3.27
2887 4085 5.465051 TGATCTGCATATTAGCTTCGTCTC 58.535 41.667 0.00 0.00 34.99 3.36
2908 4107 3.327757 AGCTCCAGAAACCATTGTACTGA 59.672 43.478 0.00 0.00 33.62 3.41
2944 4143 5.067805 GGGGGTGCAAGTAATTCATTTAGAG 59.932 44.000 0.00 0.00 0.00 2.43
2987 4188 8.902040 AAATTTTGCATTCGAGATAAACTCTC 57.098 30.769 0.00 0.00 45.98 3.20
2998 4199 4.671508 CGGTAGCAGAAATTTTGCATTCGA 60.672 41.667 20.12 0.00 43.92 3.71
2999 4200 3.543494 CGGTAGCAGAAATTTTGCATTCG 59.457 43.478 20.12 16.40 43.92 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.