Multiple sequence alignment - TraesCS5B01G210600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G210600 chr5B 100.000 6492 0 0 1 6492 381346958 381353449 0.000000e+00 11989
1 TraesCS5B01G210600 chr5B 96.674 932 30 1 4131 5061 710687160 710686229 0.000000e+00 1548
2 TraesCS5B01G210600 chr5B 92.143 140 9 2 1715 1853 96878931 96879069 5.140000e-46 196
3 TraesCS5B01G210600 chr5B 89.865 148 14 1 1718 1865 538274847 538274701 8.590000e-44 189
4 TraesCS5B01G210600 chr5A 96.749 1907 50 8 1852 3749 428416490 428414587 0.000000e+00 3168
5 TraesCS5B01G210600 chr5A 91.434 969 48 18 610 1560 428417645 428416694 0.000000e+00 1297
6 TraesCS5B01G210600 chr5A 94.063 758 36 5 5127 5881 428414006 428413255 0.000000e+00 1142
7 TraesCS5B01G210600 chr5A 85.379 1108 125 20 1 1096 428420064 428418982 0.000000e+00 1114
8 TraesCS5B01G210600 chr5A 81.424 646 47 42 5901 6492 428413266 428412640 1.650000e-125 460
9 TraesCS5B01G210600 chr5A 89.041 146 11 3 1579 1719 428416638 428416493 6.690000e-40 176
10 TraesCS5B01G210600 chr5A 83.553 152 18 2 1 151 428417822 428417677 1.140000e-27 135
11 TraesCS5B01G210600 chr5D 96.788 1899 49 3 1852 3749 327984276 327986163 0.000000e+00 3158
12 TraesCS5B01G210600 chr5D 95.852 916 37 1 4123 5038 205117257 205118171 0.000000e+00 1480
13 TraesCS5B01G210600 chr5D 95.361 927 37 6 4123 5047 241111325 241110403 0.000000e+00 1469
14 TraesCS5B01G210600 chr5D 91.151 938 32 16 644 1560 327983063 327983970 0.000000e+00 1225
15 TraesCS5B01G210600 chr5D 93.399 818 41 8 5067 5881 327986147 327986954 0.000000e+00 1199
16 TraesCS5B01G210600 chr5D 97.927 386 6 2 3746 4131 205116837 205117220 0.000000e+00 667
17 TraesCS5B01G210600 chr5D 97.900 381 7 1 3751 4131 464904247 464904626 0.000000e+00 658
18 TraesCS5B01G210600 chr5D 96.684 392 11 2 3741 4131 398867298 398866908 0.000000e+00 651
19 TraesCS5B01G210600 chr5D 96.667 390 10 3 3743 4131 280309296 280308909 0.000000e+00 645
20 TraesCS5B01G210600 chr5D 86.337 505 55 9 139 642 327982355 327982846 7.410000e-149 538
21 TraesCS5B01G210600 chr5D 93.130 131 9 0 1726 1856 122278140 122278010 6.640000e-45 193
22 TraesCS5B01G210600 chr5D 93.701 127 8 0 1727 1853 204877368 204877242 2.390000e-44 191
23 TraesCS5B01G210600 chr5D 98.990 99 1 0 5898 5996 327986940 327987038 1.860000e-40 178
24 TraesCS5B01G210600 chr5D 100.000 71 0 0 1650 1720 327984204 327984274 1.470000e-26 132
25 TraesCS5B01G210600 chr5D 100.000 56 0 0 1579 1634 327984028 327984083 3.200000e-18 104
26 TraesCS5B01G210600 chr3B 97.012 937 24 4 4123 5057 50156552 50155618 0.000000e+00 1572
27 TraesCS5B01G210600 chrUn 96.344 930 25 2 4129 5058 31727397 31726477 0.000000e+00 1520
28 TraesCS5B01G210600 chrUn 97.382 382 9 1 3745 4125 31727825 31727444 0.000000e+00 649
29 TraesCS5B01G210600 chrUn 93.130 131 9 0 1723 1853 379120290 379120160 6.640000e-45 193
30 TraesCS5B01G210600 chrUn 92.969 128 9 0 1726 1853 332269330 332269457 3.090000e-43 187
31 TraesCS5B01G210600 chrUn 90.714 140 13 0 1716 1855 477687440 477687579 3.090000e-43 187
32 TraesCS5B01G210600 chrUn 92.913 127 9 0 1727 1853 52994564 52994438 1.110000e-42 185
33 TraesCS5B01G210600 chrUn 90.714 140 12 1 1721 1860 304504657 304504519 1.110000e-42 185
34 TraesCS5B01G210600 chrUn 92.913 127 8 1 1727 1853 79072315 79072190 4.000000e-42 183
35 TraesCS5B01G210600 chrUn 92.188 128 10 0 1726 1853 404804046 404803919 1.440000e-41 182
36 TraesCS5B01G210600 chrUn 91.538 130 10 1 1724 1853 20549700 20549828 1.860000e-40 178
37 TraesCS5B01G210600 chrUn 90.840 131 12 0 1727 1857 16475962 16475832 6.690000e-40 176
38 TraesCS5B01G210600 chrUn 86.364 154 19 2 1701 1853 338618392 338618240 4.030000e-37 167
39 TraesCS5B01G210600 chrUn 86.364 154 19 2 1701 1853 401319805 401319653 4.030000e-37 167
40 TraesCS5B01G210600 chr2B 95.587 929 35 4 4123 5051 799274710 799275632 0.000000e+00 1483
41 TraesCS5B01G210600 chr2B 93.431 137 8 1 1721 1856 550044186 550044050 1.100000e-47 202
42 TraesCS5B01G210600 chr1B 95.666 923 35 3 4123 5045 9632873 9631956 0.000000e+00 1478
43 TraesCS5B01G210600 chr1B 93.939 132 8 0 1727 1858 41782558 41782689 3.970000e-47 200
44 TraesCS5B01G210600 chr1B 93.233 133 8 1 1723 1855 579776544 579776413 1.850000e-45 195
45 TraesCS5B01G210600 chr2D 95.474 928 37 5 4123 5049 639830879 639829956 0.000000e+00 1476
46 TraesCS5B01G210600 chr2D 97.389 383 8 2 3750 4131 517093106 517092725 0.000000e+00 651
47 TraesCS5B01G210600 chr2D 97.143 385 9 2 3748 4131 319689215 319688832 0.000000e+00 649
48 TraesCS5B01G210600 chr2D 95.312 128 6 0 1726 1853 450745636 450745509 3.070000e-48 204
49 TraesCS5B01G210600 chr2D 93.939 132 6 2 1722 1853 287199385 287199256 1.430000e-46 198
50 TraesCS5B01G210600 chr2D 92.199 141 9 2 1715 1854 637087538 637087399 1.430000e-46 198
51 TraesCS5B01G210600 chr2D 92.647 136 9 1 1721 1856 431734147 431734013 1.850000e-45 195
52 TraesCS5B01G210600 chr6D 95.140 926 40 5 4123 5046 131932431 131933353 0.000000e+00 1456
53 TraesCS5B01G210600 chr6D 92.647 136 9 1 1721 1856 247794799 247794665 1.850000e-45 195
54 TraesCS5B01G210600 chr6D 92.537 134 10 0 1720 1853 299194073 299194206 6.640000e-45 193
55 TraesCS5B01G210600 chr6D 93.701 127 7 1 1727 1853 373249710 373249585 8.590000e-44 189
56 TraesCS5B01G210600 chr6D 92.308 130 8 1 1724 1853 108856650 108856777 4.000000e-42 183
57 TraesCS5B01G210600 chr7D 97.668 386 7 2 3747 4131 205949081 205948697 0.000000e+00 662
58 TraesCS5B01G210600 chr7D 96.667 390 11 2 3743 4131 555002385 555002773 0.000000e+00 647
59 TraesCS5B01G210600 chr4B 94.531 128 7 0 1727 1854 580801852 580801725 1.430000e-46 198
60 TraesCS5B01G210600 chr4A 91.608 143 10 2 1712 1853 675518132 675518273 5.140000e-46 196
61 TraesCS5B01G210600 chr7A 92.647 136 9 1 1723 1857 709387059 709387194 1.850000e-45 195
62 TraesCS5B01G210600 chr6A 93.182 132 9 0 1723 1854 555246054 555245923 1.850000e-45 195
63 TraesCS5B01G210600 chr6A 92.537 134 9 1 1727 1860 498589772 498589904 2.390000e-44 191
64 TraesCS5B01G210600 chr2A 86.857 175 20 3 1718 1889 502328213 502328039 6.640000e-45 193
65 TraesCS5B01G210600 chr1A 93.750 128 8 0 1726 1853 187375213 187375086 6.640000e-45 193
66 TraesCS5B01G210600 chr1A 93.701 127 8 0 1727 1853 574666426 574666552 2.390000e-44 191
67 TraesCS5B01G210600 chr1A 90.714 140 13 0 1716 1855 444433496 444433635 3.090000e-43 187
68 TraesCS5B01G210600 chr1A 88.312 154 15 3 1701 1853 534363101 534363252 1.440000e-41 182
69 TraesCS5B01G210600 chr4D 93.701 127 7 1 1727 1853 344231965 344231840 8.590000e-44 189
70 TraesCS5B01G210600 chr4D 92.308 130 10 0 1727 1856 144894934 144894805 1.110000e-42 185
71 TraesCS5B01G210600 chr4D 91.791 134 10 1 1721 1854 152182417 152182285 1.110000e-42 185
72 TraesCS5B01G210600 chr4D 91.176 136 11 1 1721 1856 406404639 406404505 4.000000e-42 183
73 TraesCS5B01G210600 chr3A 89.404 151 13 3 1711 1860 739560053 739559905 3.090000e-43 187


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G210600 chr5B 381346958 381353449 6491 False 11989.000000 11989 100.000000 1 6492 1 chr5B.!!$F2 6491
1 TraesCS5B01G210600 chr5B 710686229 710687160 931 True 1548.000000 1548 96.674000 4131 5061 1 chr5B.!!$R2 930
2 TraesCS5B01G210600 chr5A 428412640 428420064 7424 True 1070.285714 3168 88.806143 1 6492 7 chr5A.!!$R1 6491
3 TraesCS5B01G210600 chr5D 241110403 241111325 922 True 1469.000000 1469 95.361000 4123 5047 1 chr5D.!!$R3 924
4 TraesCS5B01G210600 chr5D 205116837 205118171 1334 False 1073.500000 1480 96.889500 3746 5038 2 chr5D.!!$F2 1292
5 TraesCS5B01G210600 chr5D 327982355 327987038 4683 False 933.428571 3158 95.237857 139 5996 7 chr5D.!!$F3 5857
6 TraesCS5B01G210600 chr3B 50155618 50156552 934 True 1572.000000 1572 97.012000 4123 5057 1 chr3B.!!$R1 934
7 TraesCS5B01G210600 chrUn 31726477 31727825 1348 True 1084.500000 1520 96.863000 3745 5058 2 chrUn.!!$R9 1313
8 TraesCS5B01G210600 chr2B 799274710 799275632 922 False 1483.000000 1483 95.587000 4123 5051 1 chr2B.!!$F1 928
9 TraesCS5B01G210600 chr1B 9631956 9632873 917 True 1478.000000 1478 95.666000 4123 5045 1 chr1B.!!$R1 922
10 TraesCS5B01G210600 chr2D 639829956 639830879 923 True 1476.000000 1476 95.474000 4123 5049 1 chr2D.!!$R7 926
11 TraesCS5B01G210600 chr6D 131932431 131933353 922 False 1456.000000 1456 95.140000 4123 5046 1 chr6D.!!$F2 923

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
682 2502 0.109272 CCTACGAAGAGCGAGCAACA 60.109 55.000 0.00 0.0 44.57 3.33 F
683 2503 1.263776 CTACGAAGAGCGAGCAACAG 58.736 55.000 0.00 0.0 44.57 3.16 F
1560 3409 1.271656 GAGTTGGTGTAGGCGTGTAGT 59.728 52.381 0.00 0.0 0.00 2.73 F
1743 3743 0.038744 ACTACTTCCTCCGTCCGGAA 59.961 55.000 5.23 0.0 44.66 4.30 F
2583 4589 0.179048 TGGGTATGCTTGAGATGGCG 60.179 55.000 0.00 0.0 0.00 5.69 F
2954 4960 2.787994 CCAACTTCAGGTGAGCAGAAT 58.212 47.619 0.00 0.0 0.00 2.40 F
4041 6050 3.753434 CGTGCTCTCAGAGGCCGT 61.753 66.667 3.18 0.0 0.00 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1724 3724 0.038744 TTCCGGACGGAGGAAGTAGT 59.961 55.000 13.64 0.00 46.06 2.73 R
1731 3731 1.206371 ACAACTATTTCCGGACGGAGG 59.794 52.381 13.64 8.21 46.06 4.30 R
3045 5053 2.423185 TCATGAATGGTCCGTGCATTTC 59.577 45.455 1.17 0.00 0.00 2.17 R
3715 5724 0.825010 AGCAGGCAACACTTCCCAAG 60.825 55.000 0.00 0.00 41.41 3.61 R
3948 5957 0.329261 AGATGTTAGGCTTGGCTGCA 59.671 50.000 6.97 6.39 34.04 4.41 R
4127 6136 1.167781 TATATCAGTGGCGACCGCGA 61.168 55.000 8.23 1.16 43.06 5.87 R
5709 8316 0.254747 CACCACACATCCCCCGTAAT 59.745 55.000 0.00 0.00 0.00 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.733523 GCACCTTGTTACAAAGAAGTGGTG 60.734 45.833 20.50 20.50 31.64 4.17
30 31 2.597510 AAAGAAGTGGTGCCCGCC 60.598 61.111 1.65 0.00 33.99 6.13
40 41 3.706373 TGCCCGCCTGAGGAGAAC 61.706 66.667 0.65 0.00 0.00 3.01
45 46 1.333636 CCGCCTGAGGAGAACTGGAT 61.334 60.000 0.65 0.00 0.00 3.41
52 53 2.834549 TGAGGAGAACTGGATGAAGGTC 59.165 50.000 0.00 0.00 33.81 3.85
78 80 1.536766 AGATGGTGCAATGTCAACACG 59.463 47.619 0.00 0.00 36.36 4.49
93 95 1.237285 ACACGCTGGATTGTGAAGGC 61.237 55.000 0.00 0.00 39.38 4.35
114 116 0.831307 GGGGAGCGGTTCTACAGAAT 59.169 55.000 0.00 0.00 36.33 2.40
154 156 2.743183 GCAGTATCGTGCCATTTCTCCT 60.743 50.000 0.00 0.00 37.49 3.69
161 163 2.570135 GTGCCATTTCTCCTCTCCATC 58.430 52.381 0.00 0.00 0.00 3.51
164 166 3.181447 TGCCATTTCTCCTCTCCATCATC 60.181 47.826 0.00 0.00 0.00 2.92
165 167 3.661944 CCATTTCTCCTCTCCATCATCG 58.338 50.000 0.00 0.00 0.00 3.84
191 193 4.907579 CAAAGTTGGTCAAAATTTGGCAC 58.092 39.130 12.62 2.83 45.59 5.01
192 194 4.486125 AAGTTGGTCAAAATTTGGCACT 57.514 36.364 12.62 5.16 36.88 4.40
193 195 4.058721 AGTTGGTCAAAATTTGGCACTC 57.941 40.909 12.62 1.80 36.88 3.51
228 230 0.396695 ATTCAGCTGGCATTGGGAGG 60.397 55.000 15.13 0.00 0.00 4.30
238 240 1.247567 CATTGGGAGGTTGGTGTCAC 58.752 55.000 0.00 0.00 0.00 3.67
249 251 1.367840 GGTGTCACGAAGCTGACCT 59.632 57.895 1.77 0.00 37.61 3.85
252 254 0.750249 TGTCACGAAGCTGACCTTGA 59.250 50.000 1.77 0.00 37.61 3.02
285 287 4.478206 AGACATCCACAAGATCAACGAT 57.522 40.909 0.00 0.00 30.59 3.73
300 302 3.952323 TCAACGATAAGACGAAGGATCCT 59.048 43.478 9.02 9.02 37.03 3.24
322 324 0.251564 AACCAATGGGCCGATTGTCA 60.252 50.000 31.13 9.49 37.90 3.58
330 332 1.373570 GGCCGATTGTCAAAGAGGAG 58.626 55.000 8.09 0.00 0.00 3.69
339 341 4.342862 TGTCAAAGAGGAGAAGGAGTTG 57.657 45.455 0.00 0.00 0.00 3.16
364 366 6.153510 GCTCCCTTTTCATTTGAGGAGTTTAT 59.846 38.462 12.54 0.00 42.38 1.40
377 379 4.344104 AGGAGTTTATGGTCAAATGGTGG 58.656 43.478 0.00 0.00 0.00 4.61
378 380 4.044065 AGGAGTTTATGGTCAAATGGTGGA 59.956 41.667 0.00 0.00 0.00 4.02
383 385 5.720371 TTATGGTCAAATGGTGGAACAAG 57.280 39.130 0.00 0.00 44.16 3.16
386 388 1.606668 GTCAAATGGTGGAACAAGCGA 59.393 47.619 0.00 0.00 44.16 4.93
421 423 2.292267 CATAATTCGGCCAGTGAAGCT 58.708 47.619 2.24 0.00 0.00 3.74
460 462 5.942961 TGTAAAACTTGGTTCCAGATACCA 58.057 37.500 0.00 0.00 43.71 3.25
470 472 1.285667 TCCAGATACCACCGGAGTGTA 59.714 52.381 9.46 6.71 42.88 2.90
488 490 2.148768 GTATTATTACGGTGGCAGCCC 58.851 52.381 9.64 0.00 0.00 5.19
491 493 0.978667 TATTACGGTGGCAGCCCAGA 60.979 55.000 9.64 0.00 43.18 3.86
493 495 2.058125 TTACGGTGGCAGCCCAGAAA 62.058 55.000 9.64 0.00 43.18 2.52
494 496 2.741486 TACGGTGGCAGCCCAGAAAC 62.741 60.000 9.64 0.00 43.18 2.78
621 623 8.880878 ACTAAATGTTTTTATTTTCGGCAACT 57.119 26.923 0.00 0.00 32.79 3.16
654 657 7.957002 TGGTGAAGCCAAGTTAAATAAAATCA 58.043 30.769 0.00 0.00 45.94 2.57
671 674 9.855021 AATAAAATCATTTTGTTCCCTACGAAG 57.145 29.630 5.56 0.00 29.54 3.79
672 675 7.519032 AAAATCATTTTGTTCCCTACGAAGA 57.481 32.000 0.00 0.00 31.78 2.87
673 676 6.743575 AATCATTTTGTTCCCTACGAAGAG 57.256 37.500 0.00 0.00 31.78 2.85
674 677 4.000988 TCATTTTGTTCCCTACGAAGAGC 58.999 43.478 0.00 0.00 31.78 4.09
682 2502 0.109272 CCTACGAAGAGCGAGCAACA 60.109 55.000 0.00 0.00 44.57 3.33
683 2503 1.263776 CTACGAAGAGCGAGCAACAG 58.736 55.000 0.00 0.00 44.57 3.16
700 2520 2.656947 CAGGTGGTTTCTTCCTGGAA 57.343 50.000 9.14 9.14 43.30 3.53
701 2521 2.508526 CAGGTGGTTTCTTCCTGGAAG 58.491 52.381 27.01 27.01 43.30 3.46
783 2615 7.066404 ACCAACACCAATTTTTAACCATCAAAC 59.934 33.333 0.00 0.00 0.00 2.93
784 2616 7.281999 CCAACACCAATTTTTAACCATCAAACT 59.718 33.333 0.00 0.00 0.00 2.66
785 2617 8.334632 CAACACCAATTTTTAACCATCAAACTC 58.665 33.333 0.00 0.00 0.00 3.01
814 2647 7.393515 AGAATAACCATTTTAACTGGTCCAGTC 59.606 37.037 24.93 7.18 46.29 3.51
925 2762 3.692406 AACTCCGCCGACCCACTC 61.692 66.667 0.00 0.00 0.00 3.51
977 2814 3.834799 CGCGTGTCCTCCCCTACC 61.835 72.222 0.00 0.00 0.00 3.18
979 2816 2.762875 CGTGTCCTCCCCTACCCC 60.763 72.222 0.00 0.00 0.00 4.95
980 2817 2.785703 GTGTCCTCCCCTACCCCT 59.214 66.667 0.00 0.00 0.00 4.79
981 2818 1.382833 GTGTCCTCCCCTACCCCTC 60.383 68.421 0.00 0.00 0.00 4.30
982 2819 2.286213 GTCCTCCCCTACCCCTCC 59.714 72.222 0.00 0.00 0.00 4.30
983 2820 3.040814 TCCTCCCCTACCCCTCCC 61.041 72.222 0.00 0.00 0.00 4.30
984 2821 3.043404 CCTCCCCTACCCCTCCCT 61.043 72.222 0.00 0.00 0.00 4.20
985 2822 2.615773 CTCCCCTACCCCTCCCTC 59.384 72.222 0.00 0.00 0.00 4.30
986 2823 3.040814 TCCCCTACCCCTCCCTCC 61.041 72.222 0.00 0.00 0.00 4.30
987 2824 3.373846 CCCCTACCCCTCCCTCCA 61.374 72.222 0.00 0.00 0.00 3.86
988 2825 2.040779 CCCTACCCCTCCCTCCAC 60.041 72.222 0.00 0.00 0.00 4.02
989 2826 2.784984 CCTACCCCTCCCTCCACA 59.215 66.667 0.00 0.00 0.00 4.17
1043 2883 4.150454 CGCCCTCCTCCTCCTCCT 62.150 72.222 0.00 0.00 0.00 3.69
1045 2885 2.612251 CCCTCCTCCTCCTCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
1053 2893 2.192443 CTCCTCCTCCTCGCCGTA 59.808 66.667 0.00 0.00 0.00 4.02
1054 2894 1.894756 CTCCTCCTCCTCGCCGTAG 60.895 68.421 0.00 0.00 0.00 3.51
1152 2992 4.467084 TTCATCCTCCACGCCGGC 62.467 66.667 19.07 19.07 33.14 6.13
1209 3049 4.816984 ACCGCCGAGGAGGACGAT 62.817 66.667 18.75 0.00 45.00 3.73
1250 3090 4.251268 GCCTTCATACGGTAGTTTGTCTT 58.749 43.478 0.00 0.00 32.32 3.01
1285 3125 2.505557 GTGGCTTGCTTGCATCGC 60.506 61.111 0.00 2.71 34.04 4.58
1391 3231 6.071616 GCATTTGGATGGTTTTTGGTAGTAGA 60.072 38.462 0.00 0.00 33.72 2.59
1392 3232 7.363793 GCATTTGGATGGTTTTTGGTAGTAGAT 60.364 37.037 0.00 0.00 33.72 1.98
1393 3233 9.184523 CATTTGGATGGTTTTTGGTAGTAGATA 57.815 33.333 0.00 0.00 0.00 1.98
1411 3254 7.183460 AGTAGATAGGTCAAAGTGAGTAGGTT 58.817 38.462 0.00 0.00 0.00 3.50
1484 3327 2.874701 CCATTCCCGCTGAGTAATTCTG 59.125 50.000 0.00 0.00 0.00 3.02
1490 3333 2.120232 CGCTGAGTAATTCTGGCTACG 58.880 52.381 0.00 0.00 0.00 3.51
1560 3409 1.271656 GAGTTGGTGTAGGCGTGTAGT 59.728 52.381 0.00 0.00 0.00 2.73
1561 3410 2.489329 GAGTTGGTGTAGGCGTGTAGTA 59.511 50.000 0.00 0.00 0.00 1.82
1562 3411 2.229784 AGTTGGTGTAGGCGTGTAGTAC 59.770 50.000 0.00 0.00 0.00 2.73
1563 3412 2.205022 TGGTGTAGGCGTGTAGTACT 57.795 50.000 0.00 0.00 0.00 2.73
1564 3413 2.517959 TGGTGTAGGCGTGTAGTACTT 58.482 47.619 0.00 0.00 0.00 2.24
1565 3414 2.892852 TGGTGTAGGCGTGTAGTACTTT 59.107 45.455 0.00 0.00 0.00 2.66
1567 3416 4.202243 TGGTGTAGGCGTGTAGTACTTTTT 60.202 41.667 0.00 0.00 0.00 1.94
1643 3542 7.595819 AAATTTTCTCCAAGTACATGTCCAA 57.404 32.000 0.00 0.00 0.00 3.53
1728 3728 8.812147 TGCATACTAGCATGTTTGTATACTAC 57.188 34.615 14.26 3.37 40.11 2.73
1729 3729 8.638873 TGCATACTAGCATGTTTGTATACTACT 58.361 33.333 14.26 0.00 40.11 2.57
1730 3730 9.477484 GCATACTAGCATGTTTGTATACTACTT 57.523 33.333 14.26 0.00 0.00 2.24
1733 3733 8.307582 ACTAGCATGTTTGTATACTACTTCCT 57.692 34.615 4.17 0.07 0.00 3.36
1734 3734 8.414778 ACTAGCATGTTTGTATACTACTTCCTC 58.585 37.037 4.17 0.00 0.00 3.71
1735 3735 6.583562 AGCATGTTTGTATACTACTTCCTCC 58.416 40.000 4.17 0.00 0.00 4.30
1736 3736 5.462398 GCATGTTTGTATACTACTTCCTCCG 59.538 44.000 4.17 0.00 0.00 4.63
1737 3737 6.570692 CATGTTTGTATACTACTTCCTCCGT 58.429 40.000 4.17 0.00 0.00 4.69
1738 3738 6.199937 TGTTTGTATACTACTTCCTCCGTC 57.800 41.667 4.17 0.00 0.00 4.79
1739 3739 5.126061 TGTTTGTATACTACTTCCTCCGTCC 59.874 44.000 4.17 0.00 0.00 4.79
1740 3740 3.470709 TGTATACTACTTCCTCCGTCCG 58.529 50.000 4.17 0.00 0.00 4.79
1741 3741 1.978454 ATACTACTTCCTCCGTCCGG 58.022 55.000 0.00 0.00 0.00 5.14
1742 3742 0.911769 TACTACTTCCTCCGTCCGGA 59.088 55.000 0.00 0.00 42.90 5.14
1743 3743 0.038744 ACTACTTCCTCCGTCCGGAA 59.961 55.000 5.23 0.00 44.66 4.30
1744 3744 1.180029 CTACTTCCTCCGTCCGGAAA 58.820 55.000 5.23 1.47 44.66 3.13
1745 3745 1.755380 CTACTTCCTCCGTCCGGAAAT 59.245 52.381 5.23 0.00 44.66 2.17
1746 3746 1.856629 ACTTCCTCCGTCCGGAAATA 58.143 50.000 5.23 0.00 44.66 1.40
1747 3747 1.755380 ACTTCCTCCGTCCGGAAATAG 59.245 52.381 5.23 3.15 44.66 1.73
1748 3748 1.755380 CTTCCTCCGTCCGGAAATAGT 59.245 52.381 5.23 0.00 44.66 2.12
1749 3749 1.856629 TCCTCCGTCCGGAAATAGTT 58.143 50.000 5.23 0.00 44.66 2.24
1750 3750 1.479323 TCCTCCGTCCGGAAATAGTTG 59.521 52.381 5.23 0.00 44.66 3.16
1751 3751 1.206371 CCTCCGTCCGGAAATAGTTGT 59.794 52.381 5.23 0.00 44.66 3.32
1752 3752 2.537401 CTCCGTCCGGAAATAGTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
1753 3753 1.894466 TCCGTCCGGAAATAGTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
1754 3754 1.997606 CCGTCCGGAAATAGTTGTCAC 59.002 52.381 5.23 0.00 37.50 3.67
1755 3755 1.997606 CGTCCGGAAATAGTTGTCACC 59.002 52.381 5.23 0.00 0.00 4.02
1756 3756 2.610976 CGTCCGGAAATAGTTGTCACCA 60.611 50.000 5.23 0.00 0.00 4.17
1757 3757 3.404899 GTCCGGAAATAGTTGTCACCAA 58.595 45.455 5.23 0.00 0.00 3.67
1758 3758 3.816523 GTCCGGAAATAGTTGTCACCAAA 59.183 43.478 5.23 0.00 30.94 3.28
1759 3759 4.276431 GTCCGGAAATAGTTGTCACCAAAA 59.724 41.667 5.23 0.00 30.94 2.44
1760 3760 5.048294 GTCCGGAAATAGTTGTCACCAAAAT 60.048 40.000 5.23 0.00 30.94 1.82
1761 3761 6.149807 GTCCGGAAATAGTTGTCACCAAAATA 59.850 38.462 5.23 0.00 30.94 1.40
1762 3762 6.715718 TCCGGAAATAGTTGTCACCAAAATAA 59.284 34.615 0.00 0.00 30.94 1.40
1763 3763 7.230913 TCCGGAAATAGTTGTCACCAAAATAAA 59.769 33.333 0.00 0.00 30.94 1.40
1764 3764 8.032451 CCGGAAATAGTTGTCACCAAAATAAAT 58.968 33.333 0.00 0.00 30.94 1.40
1772 3772 8.154203 AGTTGTCACCAAAATAAATAAAAGGGG 58.846 33.333 0.00 0.00 30.94 4.79
1773 3773 7.857404 TGTCACCAAAATAAATAAAAGGGGA 57.143 32.000 0.00 0.00 0.00 4.81
1774 3774 8.442660 TGTCACCAAAATAAATAAAAGGGGAT 57.557 30.769 0.00 0.00 28.65 3.85
1775 3775 8.317679 TGTCACCAAAATAAATAAAAGGGGATG 58.682 33.333 0.00 0.00 28.65 3.51
1776 3776 8.318412 GTCACCAAAATAAATAAAAGGGGATGT 58.682 33.333 0.00 0.00 28.65 3.06
1777 3777 9.548631 TCACCAAAATAAATAAAAGGGGATGTA 57.451 29.630 0.00 0.00 0.00 2.29
1817 3817 8.910351 AGTTCTAGCTACATCCATTTTTATCC 57.090 34.615 0.00 0.00 0.00 2.59
1818 3818 8.494433 AGTTCTAGCTACATCCATTTTTATCCA 58.506 33.333 0.00 0.00 0.00 3.41
1819 3819 9.289782 GTTCTAGCTACATCCATTTTTATCCAT 57.710 33.333 0.00 0.00 0.00 3.41
1820 3820 9.866655 TTCTAGCTACATCCATTTTTATCCATT 57.133 29.630 0.00 0.00 0.00 3.16
1821 3821 9.866655 TCTAGCTACATCCATTTTTATCCATTT 57.133 29.630 0.00 0.00 0.00 2.32
1824 3824 8.980596 AGCTACATCCATTTTTATCCATTTTGA 58.019 29.630 0.00 0.00 0.00 2.69
1825 3825 9.768662 GCTACATCCATTTTTATCCATTTTGAT 57.231 29.630 0.00 0.00 0.00 2.57
1828 3828 9.603921 ACATCCATTTTTATCCATTTTGATGAC 57.396 29.630 0.00 0.00 32.39 3.06
1829 3829 9.602568 CATCCATTTTTATCCATTTTGATGACA 57.397 29.630 0.00 0.00 0.00 3.58
1831 3831 9.656040 TCCATTTTTATCCATTTTGATGACAAG 57.344 29.630 0.00 0.00 37.32 3.16
1832 3832 9.439500 CCATTTTTATCCATTTTGATGACAAGT 57.561 29.630 0.00 0.00 37.32 3.16
1840 3840 8.830201 TCCATTTTGATGACAAGTATTTTTGG 57.170 30.769 0.00 0.00 37.32 3.28
1841 3841 8.646004 TCCATTTTGATGACAAGTATTTTTGGA 58.354 29.630 0.00 0.00 37.32 3.53
1842 3842 8.711457 CCATTTTGATGACAAGTATTTTTGGAC 58.289 33.333 0.00 0.00 37.32 4.02
1843 3843 7.922505 TTTTGATGACAAGTATTTTTGGACG 57.077 32.000 0.00 0.00 37.32 4.79
1844 3844 5.621197 TGATGACAAGTATTTTTGGACGG 57.379 39.130 0.00 0.00 32.32 4.79
1845 3845 5.309638 TGATGACAAGTATTTTTGGACGGA 58.690 37.500 0.00 0.00 32.32 4.69
1846 3846 5.411361 TGATGACAAGTATTTTTGGACGGAG 59.589 40.000 0.00 0.00 32.32 4.63
1847 3847 4.069304 TGACAAGTATTTTTGGACGGAGG 58.931 43.478 0.00 0.00 32.32 4.30
1848 3848 3.418047 ACAAGTATTTTTGGACGGAGGG 58.582 45.455 0.00 0.00 32.32 4.30
1849 3849 3.073356 ACAAGTATTTTTGGACGGAGGGA 59.927 43.478 0.00 0.00 32.32 4.20
1850 3850 3.629142 AGTATTTTTGGACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
1858 3858 1.918262 TGGACGGAGGGAGTAGTAGAA 59.082 52.381 0.00 0.00 0.00 2.10
1868 3868 3.368116 GGGAGTAGTAGAAATGTGCACGT 60.368 47.826 13.13 9.52 0.00 4.49
1982 3988 2.119495 GCCATCCTTCCTTCCTGTAGA 58.881 52.381 0.00 0.00 0.00 2.59
1994 4000 4.865365 CCTTCCTGTAGACTCGAATTTCAC 59.135 45.833 0.00 0.00 0.00 3.18
2133 4139 2.935849 TCGTGAAATGATTGGTGGATCG 59.064 45.455 0.00 0.00 0.00 3.69
2334 4340 7.360361 CAGTAAAGAAAACTGGGATGTACAAC 58.640 38.462 0.00 0.00 40.56 3.32
2490 4496 6.270815 TGCTTTCGTGATACTTGGTATCTAC 58.729 40.000 15.66 11.75 43.56 2.59
2496 4502 6.039047 TCGTGATACTTGGTATCTACTGGTTC 59.961 42.308 15.66 0.00 43.56 3.62
2583 4589 0.179048 TGGGTATGCTTGAGATGGCG 60.179 55.000 0.00 0.00 0.00 5.69
2954 4960 2.787994 CCAACTTCAGGTGAGCAGAAT 58.212 47.619 0.00 0.00 0.00 2.40
3008 5014 5.312895 TGTTTGCAGTATCTGTTATGGTGT 58.687 37.500 0.00 0.00 33.43 4.16
3009 5015 5.181056 TGTTTGCAGTATCTGTTATGGTGTG 59.819 40.000 0.00 0.00 33.43 3.82
3054 5062 6.310224 CCCAGTTTAATTTAAGGAAATGCACG 59.690 38.462 0.00 0.00 35.38 5.34
3289 5297 6.490381 GGAGGGGGTATTCTTTCAAATCATAC 59.510 42.308 0.00 0.00 0.00 2.39
3320 5328 9.314133 ACCTTTCTATTTTTAAGAATCTGGCTT 57.686 29.630 0.00 0.00 33.17 4.35
3362 5370 5.292101 GCAATGTACTACATCTCACTTGGTC 59.708 44.000 2.05 0.00 37.97 4.02
3382 5390 4.213482 GGTCATGCGTCTACTTTTTGTTCT 59.787 41.667 0.00 0.00 0.00 3.01
3390 5398 6.520104 GCGTCTACTTTTTGTTCTTTGATAGC 59.480 38.462 0.00 0.00 0.00 2.97
3606 5615 5.636903 AATACATGGCCTTACTGTCTCAT 57.363 39.130 3.32 0.00 0.00 2.90
3670 5679 9.098355 CTGTTCTACGAATATCAGGAAATTTGA 57.902 33.333 0.00 0.00 0.00 2.69
3700 5709 3.862267 CCATTAAGCTGTCTCTTCAGTCG 59.138 47.826 0.00 0.00 37.70 4.18
3715 5724 5.810587 TCTTCAGTCGTGCTACCATTTATTC 59.189 40.000 0.00 0.00 0.00 1.75
3948 5957 4.264172 TGGGCCTAATACCAAACAGACATT 60.264 41.667 4.53 0.00 32.89 2.71
4016 6025 4.660938 GGGTCTGGGGCACACACC 62.661 72.222 5.50 5.50 37.41 4.16
4041 6050 3.753434 CGTGCTCTCAGAGGCCGT 61.753 66.667 3.18 0.00 0.00 5.68
4214 6267 1.338105 CCTTGGAAGATCTGTCGTGCA 60.338 52.381 0.00 0.00 32.89 4.57
4499 6553 1.226603 GCGTAGAACGTCGCCATCT 60.227 57.895 8.04 0.00 44.73 2.90
4539 6593 2.224159 ACCGGCAACCATGTCTCCT 61.224 57.895 0.00 0.00 0.00 3.69
4549 6603 1.338105 CCATGTCTCCTCAACTCGCAA 60.338 52.381 0.00 0.00 0.00 4.85
5076 7143 3.866582 GGCCCGAGCTACTGCCAT 61.867 66.667 13.44 0.00 43.46 4.40
5077 7144 2.190578 GCCCGAGCTACTGCCATT 59.809 61.111 0.00 0.00 40.80 3.16
5078 7145 1.452108 GCCCGAGCTACTGCCATTT 60.452 57.895 0.00 0.00 40.80 2.32
5079 7146 1.032114 GCCCGAGCTACTGCCATTTT 61.032 55.000 0.00 0.00 40.80 1.82
5080 7147 0.734889 CCCGAGCTACTGCCATTTTG 59.265 55.000 0.00 0.00 40.80 2.44
5081 7148 1.453155 CCGAGCTACTGCCATTTTGT 58.547 50.000 0.00 0.00 40.80 2.83
5082 7149 1.398390 CCGAGCTACTGCCATTTTGTC 59.602 52.381 0.00 0.00 40.80 3.18
5091 7158 3.181463 ACTGCCATTTTGTCACAAATGCT 60.181 39.130 3.17 0.00 35.62 3.79
5116 7183 3.733380 CGTGCAACCTCACAAAATGTTGA 60.733 43.478 1.62 0.00 40.30 3.18
5165 7769 8.574251 TCAAAACCTGCTATACATTGTACAAT 57.426 30.769 15.47 15.47 0.00 2.71
5251 7855 4.935352 TTGAGCTAACCAAAGTGCAATT 57.065 36.364 0.00 0.00 0.00 2.32
5402 8006 2.203280 CCAACAACGGGTGGAGCA 60.203 61.111 0.00 0.00 0.00 4.26
5467 8071 5.300752 AGTGTGACATCTTTTGACGAAGAT 58.699 37.500 0.00 0.00 44.94 2.40
5573 8177 0.980754 TTTAGCAGAGGGATCGGCCA 60.981 55.000 2.24 0.00 38.95 5.36
5608 8212 1.279846 GTTGGGATACGGTCCTTGGAA 59.720 52.381 8.73 0.00 46.91 3.53
5632 8239 6.382087 AGGGTTTCTTCCTTGTTAAATCCTT 58.618 36.000 0.00 0.00 38.94 3.36
5645 8252 7.227049 TGTTAAATCCTTCTCCATTGGTTTC 57.773 36.000 1.86 0.00 0.00 2.78
5709 8316 5.247337 TGATAGGAACAGTTCATGTGTGGTA 59.753 40.000 15.36 0.00 43.00 3.25
5713 8320 5.938125 AGGAACAGTTCATGTGTGGTATTAC 59.062 40.000 15.36 0.00 43.00 1.89
5723 8330 1.487142 TGTGGTATTACGGGGGATGTG 59.513 52.381 0.00 0.00 0.00 3.21
5738 8345 4.503296 GGGGATGTGTGGTGTATGATACTC 60.503 50.000 4.03 0.02 0.00 2.59
5753 8360 8.004801 TGTATGATACTCCTCTTTGGTAGATCA 58.995 37.037 4.03 0.00 37.07 2.92
5761 8368 5.421056 TCCTCTTTGGTAGATCACGTATTGT 59.579 40.000 0.00 0.00 37.07 2.71
5779 8386 9.485206 ACGTATTGTTTCTAGTTTATGTGAACT 57.515 29.630 0.00 0.00 42.27 3.01
5792 8399 9.283768 AGTTTATGTGAACTATGAATGTTGTCA 57.716 29.630 0.00 0.00 38.06 3.58
5793 8400 9.891828 GTTTATGTGAACTATGAATGTTGTCAA 57.108 29.630 0.00 0.00 0.00 3.18
5798 8405 9.936759 TGTGAACTATGAATGTTGTCAATAGTA 57.063 29.630 0.00 0.00 29.47 1.82
5874 8481 4.336713 GGTTTCAGCATCCCAAGATTAGTC 59.663 45.833 0.00 0.00 0.00 2.59
5880 8487 4.279671 AGCATCCCAAGATTAGTCTAGTCG 59.720 45.833 0.00 0.00 33.30 4.18
5881 8488 4.559704 GCATCCCAAGATTAGTCTAGTCGG 60.560 50.000 0.00 0.00 33.30 4.79
5882 8489 3.563223 TCCCAAGATTAGTCTAGTCGGG 58.437 50.000 8.31 8.31 33.30 5.14
5883 8490 3.053095 TCCCAAGATTAGTCTAGTCGGGT 60.053 47.826 12.29 0.00 33.30 5.28
5884 8491 3.705072 CCCAAGATTAGTCTAGTCGGGTT 59.295 47.826 12.13 0.00 33.30 4.11
5885 8492 4.161754 CCCAAGATTAGTCTAGTCGGGTTT 59.838 45.833 12.13 0.00 33.30 3.27
5886 8493 5.338137 CCCAAGATTAGTCTAGTCGGGTTTT 60.338 44.000 12.13 0.00 33.30 2.43
5887 8494 6.171213 CCAAGATTAGTCTAGTCGGGTTTTT 58.829 40.000 7.53 0.00 33.30 1.94
6009 8616 6.106003 TGTGAACCTACATGTATAGCTTGTG 58.894 40.000 5.91 0.00 36.88 3.33
6016 8623 6.992123 CCTACATGTATAGCTTGTGGATTCAA 59.008 38.462 5.91 0.00 36.35 2.69
6065 8694 5.515797 TTCTAGCACATACACTATTCGCT 57.484 39.130 0.00 0.00 0.00 4.93
6066 8695 6.628919 TTCTAGCACATACACTATTCGCTA 57.371 37.500 0.00 0.00 0.00 4.26
6069 8698 7.749808 TCTAGCACATACACTATTCGCTATAC 58.250 38.462 0.00 0.00 29.77 1.47
6081 8710 7.600375 CACTATTCGCTATACAAGTCCATGATT 59.400 37.037 0.00 0.00 0.00 2.57
6107 8736 1.640428 TATTGTGCAGCTCACGCTAC 58.360 50.000 0.00 2.44 46.99 3.58
6112 8741 0.320683 TGCAGCTCACGCTACAACAT 60.321 50.000 0.00 0.00 46.99 2.71
6113 8742 1.067213 TGCAGCTCACGCTACAACATA 60.067 47.619 0.00 0.00 46.99 2.29
6114 8743 1.324736 GCAGCTCACGCTACAACATAC 59.675 52.381 0.00 0.00 46.99 2.39
6115 8744 2.881074 CAGCTCACGCTACAACATACT 58.119 47.619 0.00 0.00 46.99 2.12
6116 8745 3.733988 GCAGCTCACGCTACAACATACTA 60.734 47.826 0.00 0.00 46.99 1.82
6117 8746 4.038361 CAGCTCACGCTACAACATACTAG 58.962 47.826 0.00 0.00 46.99 2.57
6158 8787 8.431910 TTTTACAGAAATGTAGTACTCCCTCT 57.568 34.615 0.00 0.00 0.00 3.69
6159 8788 5.923733 ACAGAAATGTAGTACTCCCTCTG 57.076 43.478 0.00 8.51 36.09 3.35
6160 8789 5.580998 ACAGAAATGTAGTACTCCCTCTGA 58.419 41.667 19.25 0.00 34.51 3.27
6161 8790 6.198639 ACAGAAATGTAGTACTCCCTCTGAT 58.801 40.000 19.25 7.74 34.51 2.90
6167 8796 6.928348 TGTAGTACTCCCTCTGATCAAAAA 57.072 37.500 0.00 0.00 0.00 1.94
6197 8837 4.055360 GCATACATCCTTGTATACACGCA 58.945 43.478 4.68 0.00 45.27 5.24
6201 8841 4.295870 ACATCCTTGTATACACGCATACG 58.704 43.478 4.68 0.00 38.89 3.06
6221 8861 8.846607 GCATACGTTTTAAACTTCAAAGTATGG 58.153 33.333 21.12 11.08 38.57 2.74
6260 8900 3.820557 TCTTCTCCCAAAAACCAGTCTG 58.179 45.455 0.00 0.00 0.00 3.51
6267 8907 2.364970 CCAAAAACCAGTCTGCATGGAA 59.635 45.455 11.80 0.00 40.51 3.53
6271 8911 1.746615 CCAGTCTGCATGGAACCCG 60.747 63.158 0.00 0.00 40.51 5.28
6295 8935 1.340697 GCAAGAAATCCGTACCCCCTT 60.341 52.381 0.00 0.00 0.00 3.95
6327 8967 2.240667 ACTGCCCTTGAATCAGCTGTAT 59.759 45.455 14.67 3.40 35.91 2.29
6341 8981 6.360370 TCAGCTGTATAATAGTGGAATCCC 57.640 41.667 14.67 0.00 0.00 3.85
6342 8982 5.843969 TCAGCTGTATAATAGTGGAATCCCA 59.156 40.000 14.67 0.00 40.95 4.37
6344 8984 6.998074 CAGCTGTATAATAGTGGAATCCCAAA 59.002 38.462 5.25 0.00 45.59 3.28
6346 8986 7.721399 AGCTGTATAATAGTGGAATCCCAAAAG 59.279 37.037 0.00 0.00 45.59 2.27
6401 9057 1.225855 CCGCGCAATAATAAGAGCCA 58.774 50.000 8.75 0.00 0.00 4.75
6406 9062 4.204978 CGCGCAATAATAAGAGCCAAAAAG 59.795 41.667 8.75 0.00 0.00 2.27
6407 9063 4.504097 GCGCAATAATAAGAGCCAAAAAGG 59.496 41.667 0.30 0.00 41.84 3.11
6409 9065 5.163561 CGCAATAATAAGAGCCAAAAAGGGA 60.164 40.000 0.00 0.00 38.09 4.20
6410 9066 6.627065 CGCAATAATAAGAGCCAAAAAGGGAA 60.627 38.462 0.00 0.00 38.09 3.97
6411 9067 6.758416 GCAATAATAAGAGCCAAAAAGGGAAG 59.242 38.462 0.00 0.00 38.09 3.46
6412 9068 7.363793 GCAATAATAAGAGCCAAAAAGGGAAGA 60.364 37.037 0.00 0.00 38.09 2.87
6413 9069 8.699130 CAATAATAAGAGCCAAAAAGGGAAGAT 58.301 33.333 0.00 0.00 38.09 2.40
6414 9070 6.535963 AATAAGAGCCAAAAAGGGAAGATG 57.464 37.500 0.00 0.00 38.09 2.90
6415 9071 2.174360 AGAGCCAAAAAGGGAAGATGC 58.826 47.619 0.00 0.00 38.09 3.91
6417 9073 0.737367 GCCAAAAAGGGAAGATGCGC 60.737 55.000 0.00 0.00 38.09 6.09
6418 9074 0.602562 CCAAAAAGGGAAGATGCGCA 59.397 50.000 14.96 14.96 0.00 6.09
6419 9075 1.000731 CCAAAAAGGGAAGATGCGCAA 59.999 47.619 17.11 0.00 0.00 4.85
6420 9076 2.354003 CCAAAAAGGGAAGATGCGCAAT 60.354 45.455 17.11 2.59 0.00 3.56
6437 9093 1.521450 AATCGCAAAGCAGCAGCAGT 61.521 50.000 3.17 0.00 45.49 4.40
6442 9098 1.805869 CAAAGCAGCAGCAGTAGACT 58.194 50.000 3.17 0.00 45.49 3.24
6446 9102 0.529833 GCAGCAGCAGTAGACTGAGA 59.470 55.000 13.87 0.00 46.59 3.27
6451 9107 2.605030 CAGCAGTAGACTGAGACTTGC 58.395 52.381 13.87 1.30 46.59 4.01
6457 9113 2.376808 AGACTGAGACTTGCATTCGG 57.623 50.000 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.394836 AGTTCTCCTCAGGCGGGC 61.395 66.667 0.00 0.00 0.00 6.13
30 31 2.836981 ACCTTCATCCAGTTCTCCTCAG 59.163 50.000 0.00 0.00 0.00 3.35
40 41 1.081892 CTGCGTTGACCTTCATCCAG 58.918 55.000 0.00 0.00 0.00 3.86
45 46 0.396435 ACCATCTGCGTTGACCTTCA 59.604 50.000 0.00 0.00 0.00 3.02
78 80 2.409870 CCCGCCTTCACAATCCAGC 61.410 63.158 0.00 0.00 0.00 4.85
93 95 3.072468 TGTAGAACCGCTCCCCCG 61.072 66.667 0.00 0.00 0.00 5.73
114 116 1.565390 CCAGGAAGGCTCCATGGTGA 61.565 60.000 17.98 0.00 45.24 4.02
134 136 3.126831 GAGGAGAAATGGCACGATACTG 58.873 50.000 0.00 0.00 0.00 2.74
137 139 2.365617 GGAGAGGAGAAATGGCACGATA 59.634 50.000 0.00 0.00 0.00 2.92
151 153 2.683211 TGGATCGATGATGGAGAGGA 57.317 50.000 0.54 0.00 0.00 3.71
154 156 4.445453 CAACTTTGGATCGATGATGGAGA 58.555 43.478 0.54 0.00 0.00 3.71
188 190 3.807538 CCACCTGCATGCGAGTGC 61.808 66.667 26.32 5.61 45.25 4.40
189 191 3.129502 CCCACCTGCATGCGAGTG 61.130 66.667 25.30 25.30 0.00 3.51
191 193 2.671370 ATAGCCCACCTGCATGCGAG 62.671 60.000 14.09 9.30 0.00 5.03
192 194 2.269520 AATAGCCCACCTGCATGCGA 62.270 55.000 14.09 1.21 0.00 5.10
193 195 1.789078 GAATAGCCCACCTGCATGCG 61.789 60.000 14.09 7.87 0.00 4.73
215 217 1.077265 ACCAACCTCCCAATGCCAG 59.923 57.895 0.00 0.00 0.00 4.85
222 224 1.338890 TTCGTGACACCAACCTCCCA 61.339 55.000 0.00 0.00 0.00 4.37
228 230 0.582005 GTCAGCTTCGTGACACCAAC 59.418 55.000 0.00 0.00 45.34 3.77
238 240 0.795085 CAGCTTCAAGGTCAGCTTCG 59.205 55.000 0.00 0.00 44.28 3.79
249 251 3.449018 GGATGTCTAGGAGTCAGCTTCAA 59.551 47.826 0.00 0.00 0.00 2.69
252 254 2.763448 GTGGATGTCTAGGAGTCAGCTT 59.237 50.000 0.00 0.00 0.00 3.74
300 302 0.894141 CAATCGGCCCATTGGTTGAA 59.106 50.000 14.77 0.00 31.10 2.69
322 324 2.304470 GGAGCAACTCCTTCTCCTCTTT 59.696 50.000 6.38 0.00 46.41 2.52
339 341 3.425659 ACTCCTCAAATGAAAAGGGAGC 58.574 45.455 13.47 0.00 42.69 4.70
364 366 1.686052 GCTTGTTCCACCATTTGACCA 59.314 47.619 0.00 0.00 0.00 4.02
377 379 4.640805 TGACTTTATTCGTCGCTTGTTC 57.359 40.909 0.00 0.00 34.17 3.18
378 380 4.669197 GCATGACTTTATTCGTCGCTTGTT 60.669 41.667 0.00 0.00 34.17 2.83
383 385 3.592381 ATGCATGACTTTATTCGTCGC 57.408 42.857 0.00 0.00 34.17 5.19
386 388 6.658831 CCGAATTATGCATGACTTTATTCGT 58.341 36.000 22.24 1.78 40.48 3.85
470 472 0.548989 TGGGCTGCCACCGTAATAAT 59.451 50.000 22.05 0.00 0.00 1.28
488 490 4.452890 AAATGACTTCGACACGTTTCTG 57.547 40.909 0.00 0.00 0.00 3.02
491 493 9.719279 TTTTATTAAAATGACTTCGACACGTTT 57.281 25.926 0.00 0.00 0.00 3.60
549 551 7.745022 CGGTTGTAGAGAAAACGTTATCATA 57.255 36.000 0.00 0.00 33.11 2.15
550 552 6.642683 CGGTTGTAGAGAAAACGTTATCAT 57.357 37.500 0.00 0.00 33.11 2.45
606 608 4.674281 AAACCCAGTTGCCGAAAATAAA 57.326 36.364 0.00 0.00 0.00 1.40
608 610 4.372656 CAAAAACCCAGTTGCCGAAAATA 58.627 39.130 0.00 0.00 0.00 1.40
620 622 3.986970 GGCTTCACCAAAAACCCAG 57.013 52.632 0.00 0.00 38.86 4.45
652 655 4.000988 GCTCTTCGTAGGGAACAAAATGA 58.999 43.478 0.00 0.00 0.00 2.57
654 657 3.000727 CGCTCTTCGTAGGGAACAAAAT 58.999 45.455 0.00 0.00 0.00 1.82
662 665 0.802607 GTTGCTCGCTCTTCGTAGGG 60.803 60.000 0.00 0.00 39.67 3.53
663 666 0.109272 TGTTGCTCGCTCTTCGTAGG 60.109 55.000 0.00 0.00 39.67 3.18
665 668 0.109272 CCTGTTGCTCGCTCTTCGTA 60.109 55.000 0.00 0.00 39.67 3.43
667 670 1.373497 ACCTGTTGCTCGCTCTTCG 60.373 57.895 0.00 0.00 40.15 3.79
668 671 1.294659 CCACCTGTTGCTCGCTCTTC 61.295 60.000 0.00 0.00 0.00 2.87
669 672 1.302033 CCACCTGTTGCTCGCTCTT 60.302 57.895 0.00 0.00 0.00 2.85
671 674 1.166531 AAACCACCTGTTGCTCGCTC 61.167 55.000 0.00 0.00 37.23 5.03
672 675 1.152963 AAACCACCTGTTGCTCGCT 60.153 52.632 0.00 0.00 37.23 4.93
673 676 1.166531 AGAAACCACCTGTTGCTCGC 61.167 55.000 0.00 0.00 38.59 5.03
674 677 1.264288 GAAGAAACCACCTGTTGCTCG 59.736 52.381 0.00 0.00 42.41 5.03
682 2502 1.425448 CCTTCCAGGAAGAAACCACCT 59.575 52.381 28.56 0.00 41.71 4.00
683 2503 1.423921 TCCTTCCAGGAAGAAACCACC 59.576 52.381 28.56 0.00 42.51 4.61
701 2521 5.163332 ACTCGGTTCTTAATTAGGTCCATCC 60.163 44.000 0.00 0.00 0.00 3.51
925 2762 2.084844 GCGTGAAGCTGATGAGTGG 58.915 57.895 0.00 0.00 44.04 4.00
1152 2992 4.577246 GCGTAGAGGCCCTCGCTG 62.577 72.222 19.12 0.00 44.28 5.18
1250 3090 2.123683 TGGGGAGCAAAAACCGCA 60.124 55.556 0.00 0.00 44.58 5.69
1285 3125 3.186047 CGCGGCCGTCTGTAAAGG 61.186 66.667 28.70 0.63 0.00 3.11
1391 3231 5.422650 GGAGAACCTACTCACTTTGACCTAT 59.577 44.000 0.00 0.00 38.51 2.57
1392 3232 4.771054 GGAGAACCTACTCACTTTGACCTA 59.229 45.833 0.00 0.00 38.51 3.08
1393 3233 3.579151 GGAGAACCTACTCACTTTGACCT 59.421 47.826 0.00 0.00 38.51 3.85
1411 3254 1.267574 AATTGCGCCCTCTCAGGAGA 61.268 55.000 4.18 0.00 41.86 3.71
1484 3327 0.871722 TCAACAATGCACACGTAGCC 59.128 50.000 9.36 0.00 0.00 3.93
1490 3333 6.808212 AGCATAATTAACTCAACAATGCACAC 59.192 34.615 7.10 0.00 38.89 3.82
1530 3379 3.879295 CCTACACCAACTCATGCCATAAG 59.121 47.826 0.00 0.00 0.00 1.73
1567 3416 3.825908 AGTGCTTCCCTCCCATAAAAA 57.174 42.857 0.00 0.00 0.00 1.94
1568 3417 3.850173 AGTAGTGCTTCCCTCCCATAAAA 59.150 43.478 0.00 0.00 0.00 1.52
1571 3420 2.868964 AGTAGTGCTTCCCTCCCATA 57.131 50.000 0.00 0.00 0.00 2.74
1575 3424 4.383226 CCTCTAAAAGTAGTGCTTCCCTCC 60.383 50.000 0.00 0.00 36.17 4.30
1577 3426 3.519913 CCCTCTAAAAGTAGTGCTTCCCT 59.480 47.826 0.00 0.00 36.17 4.20
1634 3529 9.260002 CTTTGCTTTTTAGTTTATTGGACATGT 57.740 29.630 0.00 0.00 0.00 3.21
1635 3530 8.711457 CCTTTGCTTTTTAGTTTATTGGACATG 58.289 33.333 0.00 0.00 0.00 3.21
1636 3531 8.646900 TCCTTTGCTTTTTAGTTTATTGGACAT 58.353 29.630 0.00 0.00 0.00 3.06
1637 3532 8.012957 TCCTTTGCTTTTTAGTTTATTGGACA 57.987 30.769 0.00 0.00 0.00 4.02
1638 3533 8.880878 TTCCTTTGCTTTTTAGTTTATTGGAC 57.119 30.769 0.00 0.00 0.00 4.02
1720 3720 2.810852 CCGGACGGAGGAAGTAGTATAC 59.189 54.545 4.40 0.00 38.76 1.47
1721 3721 2.705658 TCCGGACGGAGGAAGTAGTATA 59.294 50.000 9.76 0.00 39.76 1.47
1722 3722 1.492176 TCCGGACGGAGGAAGTAGTAT 59.508 52.381 9.76 0.00 39.76 2.12
1723 3723 0.911769 TCCGGACGGAGGAAGTAGTA 59.088 55.000 9.76 0.00 39.76 1.82
1724 3724 0.038744 TTCCGGACGGAGGAAGTAGT 59.961 55.000 13.64 0.00 46.06 2.73
1725 3725 2.877975 TTCCGGACGGAGGAAGTAG 58.122 57.895 13.64 0.00 46.06 2.57
1729 3729 1.856629 ACTATTTCCGGACGGAGGAA 58.143 50.000 13.64 6.93 46.06 3.36
1730 3730 1.479323 CAACTATTTCCGGACGGAGGA 59.521 52.381 13.64 7.39 46.06 3.71
1731 3731 1.206371 ACAACTATTTCCGGACGGAGG 59.794 52.381 13.64 8.21 46.06 4.30
1732 3732 2.094390 TGACAACTATTTCCGGACGGAG 60.094 50.000 13.64 3.57 46.06 4.63
1733 3733 1.894466 TGACAACTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
1734 3734 1.997606 GTGACAACTATTTCCGGACGG 59.002 52.381 1.83 3.96 0.00 4.79
1735 3735 1.997606 GGTGACAACTATTTCCGGACG 59.002 52.381 1.83 0.00 0.00 4.79
1736 3736 3.048337 TGGTGACAACTATTTCCGGAC 57.952 47.619 1.83 0.00 37.44 4.79
1749 3749 7.857404 TCCCCTTTTATTTATTTTGGTGACA 57.143 32.000 0.00 0.00 39.83 3.58
1750 3750 8.318412 ACATCCCCTTTTATTTATTTTGGTGAC 58.682 33.333 0.00 0.00 0.00 3.67
1751 3751 8.442660 ACATCCCCTTTTATTTATTTTGGTGA 57.557 30.769 0.00 0.00 0.00 4.02
1791 3791 9.998106 GGATAAAAATGGATGTAGCTAGAACTA 57.002 33.333 0.00 0.00 0.00 2.24
1792 3792 8.494433 TGGATAAAAATGGATGTAGCTAGAACT 58.506 33.333 0.00 0.00 0.00 3.01
1793 3793 8.677148 TGGATAAAAATGGATGTAGCTAGAAC 57.323 34.615 0.00 0.00 0.00 3.01
1794 3794 9.866655 AATGGATAAAAATGGATGTAGCTAGAA 57.133 29.630 0.00 0.00 0.00 2.10
1795 3795 9.866655 AAATGGATAAAAATGGATGTAGCTAGA 57.133 29.630 0.00 0.00 0.00 2.43
1798 3798 8.980596 TCAAAATGGATAAAAATGGATGTAGCT 58.019 29.630 0.00 0.00 0.00 3.32
1799 3799 9.768662 ATCAAAATGGATAAAAATGGATGTAGC 57.231 29.630 0.00 0.00 0.00 3.58
1802 3802 9.603921 GTCATCAAAATGGATAAAAATGGATGT 57.396 29.630 0.00 0.00 33.42 3.06
1803 3803 9.602568 TGTCATCAAAATGGATAAAAATGGATG 57.397 29.630 0.00 0.00 33.42 3.51
1805 3805 9.656040 CTTGTCATCAAAATGGATAAAAATGGA 57.344 29.630 0.00 0.00 33.42 3.41
1806 3806 9.439500 ACTTGTCATCAAAATGGATAAAAATGG 57.561 29.630 0.00 0.00 33.42 3.16
1814 3814 9.439500 CCAAAAATACTTGTCATCAAAATGGAT 57.561 29.630 0.00 0.00 33.42 3.41
1815 3815 8.646004 TCCAAAAATACTTGTCATCAAAATGGA 58.354 29.630 0.00 0.00 33.42 3.41
1816 3816 8.711457 GTCCAAAAATACTTGTCATCAAAATGG 58.289 33.333 0.00 0.00 33.42 3.16
1817 3817 8.427012 CGTCCAAAAATACTTGTCATCAAAATG 58.573 33.333 0.00 0.00 32.87 2.32
1818 3818 7.598493 CCGTCCAAAAATACTTGTCATCAAAAT 59.402 33.333 0.00 0.00 32.87 1.82
1819 3819 6.920758 CCGTCCAAAAATACTTGTCATCAAAA 59.079 34.615 0.00 0.00 32.87 2.44
1820 3820 6.263392 TCCGTCCAAAAATACTTGTCATCAAA 59.737 34.615 0.00 0.00 32.87 2.69
1821 3821 5.765677 TCCGTCCAAAAATACTTGTCATCAA 59.234 36.000 0.00 0.00 0.00 2.57
1822 3822 5.309638 TCCGTCCAAAAATACTTGTCATCA 58.690 37.500 0.00 0.00 0.00 3.07
1823 3823 5.163754 CCTCCGTCCAAAAATACTTGTCATC 60.164 44.000 0.00 0.00 0.00 2.92
1824 3824 4.700213 CCTCCGTCCAAAAATACTTGTCAT 59.300 41.667 0.00 0.00 0.00 3.06
1825 3825 4.069304 CCTCCGTCCAAAAATACTTGTCA 58.931 43.478 0.00 0.00 0.00 3.58
1826 3826 3.439129 CCCTCCGTCCAAAAATACTTGTC 59.561 47.826 0.00 0.00 0.00 3.18
1827 3827 3.073356 TCCCTCCGTCCAAAAATACTTGT 59.927 43.478 0.00 0.00 0.00 3.16
1828 3828 3.681593 TCCCTCCGTCCAAAAATACTTG 58.318 45.455 0.00 0.00 0.00 3.16
1829 3829 3.329814 ACTCCCTCCGTCCAAAAATACTT 59.670 43.478 0.00 0.00 0.00 2.24
1830 3830 2.910977 ACTCCCTCCGTCCAAAAATACT 59.089 45.455 0.00 0.00 0.00 2.12
1831 3831 3.345508 ACTCCCTCCGTCCAAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
1832 3832 4.098894 ACTACTCCCTCCGTCCAAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
1833 3833 2.910977 ACTACTCCCTCCGTCCAAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
1834 3834 2.332117 ACTACTCCCTCCGTCCAAAAA 58.668 47.619 0.00 0.00 0.00 1.94
1835 3835 2.019807 ACTACTCCCTCCGTCCAAAA 57.980 50.000 0.00 0.00 0.00 2.44
1836 3836 2.309755 TCTACTACTCCCTCCGTCCAAA 59.690 50.000 0.00 0.00 0.00 3.28
1837 3837 1.918262 TCTACTACTCCCTCCGTCCAA 59.082 52.381 0.00 0.00 0.00 3.53
1838 3838 1.588239 TCTACTACTCCCTCCGTCCA 58.412 55.000 0.00 0.00 0.00 4.02
1839 3839 2.725221 TTCTACTACTCCCTCCGTCC 57.275 55.000 0.00 0.00 0.00 4.79
1840 3840 3.952967 ACATTTCTACTACTCCCTCCGTC 59.047 47.826 0.00 0.00 0.00 4.79
1841 3841 3.700038 CACATTTCTACTACTCCCTCCGT 59.300 47.826 0.00 0.00 0.00 4.69
1842 3842 3.491104 GCACATTTCTACTACTCCCTCCG 60.491 52.174 0.00 0.00 0.00 4.63
1843 3843 3.451178 TGCACATTTCTACTACTCCCTCC 59.549 47.826 0.00 0.00 0.00 4.30
1844 3844 4.434520 GTGCACATTTCTACTACTCCCTC 58.565 47.826 13.17 0.00 0.00 4.30
1845 3845 3.119101 CGTGCACATTTCTACTACTCCCT 60.119 47.826 18.64 0.00 0.00 4.20
1846 3846 3.187700 CGTGCACATTTCTACTACTCCC 58.812 50.000 18.64 0.00 0.00 4.30
1847 3847 3.612860 CACGTGCACATTTCTACTACTCC 59.387 47.826 18.64 0.00 0.00 3.85
1848 3848 3.060895 GCACGTGCACATTTCTACTACTC 59.939 47.826 34.52 0.00 41.59 2.59
1849 3849 2.993899 GCACGTGCACATTTCTACTACT 59.006 45.455 34.52 0.00 41.59 2.57
1850 3850 3.369835 GCACGTGCACATTTCTACTAC 57.630 47.619 34.52 0.00 41.59 2.73
1982 3988 4.455877 GTGGAGGAAATGTGAAATTCGAGT 59.544 41.667 0.00 0.00 0.00 4.18
1994 4000 5.068987 TCAAACCTGAAAAGTGGAGGAAATG 59.931 40.000 0.00 0.00 0.00 2.32
2133 4139 2.233431 TGCTTTTTGACCACCATATGCC 59.767 45.455 0.00 0.00 0.00 4.40
2334 4340 5.518847 CGGGTCACAGTGTATAAAGTACATG 59.481 44.000 0.00 0.00 0.00 3.21
2490 4496 8.824781 CAGAACTTCATGTATTGATAGAACCAG 58.175 37.037 0.00 0.00 33.34 4.00
2496 4502 5.985530 TCGCCAGAACTTCATGTATTGATAG 59.014 40.000 0.00 0.00 33.34 2.08
2583 4589 7.538575 ACTCAGCATATTCAAAATACCACAAC 58.461 34.615 0.00 0.00 0.00 3.32
2954 4960 6.274157 AGAGAATAACGAGCAGAAAAGAGA 57.726 37.500 0.00 0.00 0.00 3.10
2985 4991 5.181056 CACACCATAACAGATACTGCAAACA 59.819 40.000 0.00 0.00 34.37 2.83
3032 5040 7.088272 GTCCGTGCATTTCCTTAAATTAAACT 58.912 34.615 0.00 0.00 32.87 2.66
3045 5053 2.423185 TCATGAATGGTCCGTGCATTTC 59.577 45.455 1.17 0.00 0.00 2.17
3207 5215 7.911130 TTGGCAATCCAGAATCCAAATATAA 57.089 32.000 0.00 0.00 44.53 0.98
3227 5235 8.986477 AGACAATGACTAAACAATATTTTGGC 57.014 30.769 0.89 0.00 37.15 4.52
3270 5278 6.937436 ACGGGTATGATTTGAAAGAATACC 57.063 37.500 17.24 17.24 41.29 2.73
3289 5297 9.392259 AGATTCTTAAAAATAGAAAGGTACGGG 57.608 33.333 0.00 0.00 35.43 5.28
3362 5370 6.198687 TCAAAGAACAAAAAGTAGACGCATG 58.801 36.000 0.00 0.00 0.00 4.06
3382 5390 8.977505 GCAAAAAGTTACAATTCTGCTATCAAA 58.022 29.630 0.00 0.00 0.00 2.69
3606 5615 4.465632 TTCTACTGCTAGGAAATCGCAA 57.534 40.909 0.00 0.00 32.66 4.85
3670 5679 2.092538 AGACAGCTTAATGGCATGCTCT 60.093 45.455 18.92 5.27 33.03 4.09
3700 5709 5.652452 ACTTCCCAAGAATAAATGGTAGCAC 59.348 40.000 0.00 0.00 34.79 4.40
3715 5724 0.825010 AGCAGGCAACACTTCCCAAG 60.825 55.000 0.00 0.00 41.41 3.61
3774 5783 3.473647 CAGATGCAGAGGCCGGGA 61.474 66.667 2.18 0.00 40.13 5.14
3948 5957 0.329261 AGATGTTAGGCTTGGCTGCA 59.671 50.000 6.97 6.39 34.04 4.41
4127 6136 1.167781 TATATCAGTGGCGACCGCGA 61.168 55.000 8.23 1.16 43.06 5.87
4214 6267 2.735772 CCTGGTCGGCAGGTGCTAT 61.736 63.158 1.26 0.00 41.70 2.97
4539 6593 1.180456 TAGTCCCGGTTGCGAGTTGA 61.180 55.000 0.00 0.00 0.00 3.18
4549 6603 2.110899 AGATCCATCATCTAGTCCCGGT 59.889 50.000 0.00 0.00 40.41 5.28
4997 7063 2.692741 GGCTCCCCAACCCTAGCT 60.693 66.667 0.00 0.00 35.30 3.32
5061 7128 0.734889 CAAAATGGCAGTAGCTCGGG 59.265 55.000 0.00 0.00 41.70 5.14
5062 7129 1.398390 GACAAAATGGCAGTAGCTCGG 59.602 52.381 0.00 0.00 41.70 4.63
5063 7130 2.076100 TGACAAAATGGCAGTAGCTCG 58.924 47.619 0.00 0.00 41.70 5.03
5064 7131 2.813754 TGTGACAAAATGGCAGTAGCTC 59.186 45.455 0.00 0.00 35.04 4.09
5065 7132 2.862541 TGTGACAAAATGGCAGTAGCT 58.137 42.857 0.00 0.00 35.04 3.32
5066 7133 3.641437 TTGTGACAAAATGGCAGTAGC 57.359 42.857 0.00 0.00 35.04 3.58
5067 7134 4.386652 GCATTTGTGACAAAATGGCAGTAG 59.613 41.667 15.31 0.00 44.30 2.57
5068 7135 4.039004 AGCATTTGTGACAAAATGGCAGTA 59.961 37.500 24.27 0.42 44.30 2.74
5069 7136 3.132925 GCATTTGTGACAAAATGGCAGT 58.867 40.909 15.31 0.00 44.30 4.40
5070 7137 3.395639 AGCATTTGTGACAAAATGGCAG 58.604 40.909 24.27 10.56 44.30 4.85
5071 7138 3.472283 AGCATTTGTGACAAAATGGCA 57.528 38.095 24.27 0.00 44.30 4.92
5072 7139 4.143347 CGTTAGCATTTGTGACAAAATGGC 60.143 41.667 15.31 17.36 44.30 4.40
5073 7140 4.981674 ACGTTAGCATTTGTGACAAAATGG 59.018 37.500 15.31 8.82 44.30 3.16
5074 7141 5.610124 GCACGTTAGCATTTGTGACAAAATG 60.610 40.000 15.31 13.76 46.03 2.32
5075 7142 4.444056 GCACGTTAGCATTTGTGACAAAAT 59.556 37.500 15.31 6.90 34.29 1.82
5076 7143 3.794028 GCACGTTAGCATTTGTGACAAAA 59.206 39.130 15.31 0.00 34.29 2.44
5077 7144 3.181496 TGCACGTTAGCATTTGTGACAAA 60.181 39.130 13.66 13.66 40.11 2.83
5078 7145 2.356069 TGCACGTTAGCATTTGTGACAA 59.644 40.909 0.00 0.00 40.11 3.18
5079 7146 1.943340 TGCACGTTAGCATTTGTGACA 59.057 42.857 0.00 0.00 40.11 3.58
5080 7147 2.679355 TGCACGTTAGCATTTGTGAC 57.321 45.000 0.00 0.00 40.11 3.67
5081 7148 2.287308 GGTTGCACGTTAGCATTTGTGA 60.287 45.455 0.97 0.00 45.19 3.58
5082 7149 2.050691 GGTTGCACGTTAGCATTTGTG 58.949 47.619 0.97 0.00 45.19 3.33
5091 7158 3.378742 ACATTTTGTGAGGTTGCACGTTA 59.621 39.130 0.00 0.00 41.63 3.18
5210 7814 6.270156 TCAAAATTCTTACATGATGCAGCA 57.730 33.333 7.31 7.31 0.00 4.41
5272 7876 5.396101 CCAAGAGCTTCAGAGAACATATCCA 60.396 44.000 0.00 0.00 0.00 3.41
5421 8025 4.584327 TCTGTGTTCTTCGTCATCTTGA 57.416 40.909 0.00 0.00 0.00 3.02
5425 8029 5.940603 CACTATCTGTGTTCTTCGTCATC 57.059 43.478 0.00 0.00 41.53 2.92
5467 8071 4.266714 ACTCCCTTTTGTTTTCTTCGTCA 58.733 39.130 0.00 0.00 0.00 4.35
5573 8177 5.552870 ATCCCAACGACTAGAATTAGCAT 57.447 39.130 0.00 0.00 0.00 3.79
5608 8212 5.965486 AGGATTTAACAAGGAAGAAACCCT 58.035 37.500 0.00 0.00 35.03 4.34
5632 8239 5.939883 CACTGTATGAAGAAACCAATGGAGA 59.060 40.000 6.16 0.00 0.00 3.71
5645 8252 3.626217 AGTGATGCATGCACTGTATGAAG 59.374 43.478 25.37 0.00 44.39 3.02
5709 8316 0.254747 CACCACACATCCCCCGTAAT 59.745 55.000 0.00 0.00 0.00 1.89
5713 8320 0.463654 CATACACCACACATCCCCCG 60.464 60.000 0.00 0.00 0.00 5.73
5723 8330 5.104900 ACCAAAGAGGAGTATCATACACCAC 60.105 44.000 13.23 7.25 41.23 4.16
5738 8345 5.661458 ACAATACGTGATCTACCAAAGAGG 58.339 41.667 0.00 0.00 45.67 3.69
5753 8360 9.485206 AGTTCACATAAACTAGAAACAATACGT 57.515 29.630 0.00 0.00 37.71 3.57
5779 8386 7.011389 GCAGCAGTACTATTGACAACATTCATA 59.989 37.037 9.35 0.00 0.00 2.15
5780 8387 6.183360 GCAGCAGTACTATTGACAACATTCAT 60.183 38.462 9.35 0.00 0.00 2.57
5781 8388 5.122239 GCAGCAGTACTATTGACAACATTCA 59.878 40.000 9.35 0.00 0.00 2.57
5782 8389 5.563842 GCAGCAGTACTATTGACAACATTC 58.436 41.667 9.35 0.00 0.00 2.67
5784 8391 3.618594 CGCAGCAGTACTATTGACAACAT 59.381 43.478 9.35 0.00 0.00 2.71
5785 8392 2.993220 CGCAGCAGTACTATTGACAACA 59.007 45.455 9.35 0.00 0.00 3.33
5786 8393 3.250744 TCGCAGCAGTACTATTGACAAC 58.749 45.455 9.35 0.00 0.00 3.32
5788 8395 2.492088 ACTCGCAGCAGTACTATTGACA 59.508 45.455 9.35 0.00 0.00 3.58
5790 8397 2.735444 GCACTCGCAGCAGTACTATTGA 60.735 50.000 9.35 0.00 38.36 2.57
5791 8398 1.590238 GCACTCGCAGCAGTACTATTG 59.410 52.381 0.00 0.00 38.36 1.90
5792 8399 1.204704 TGCACTCGCAGCAGTACTATT 59.795 47.619 0.00 0.00 45.36 1.73
5793 8400 0.817654 TGCACTCGCAGCAGTACTAT 59.182 50.000 0.00 0.00 45.36 2.12
5794 8401 2.263153 TGCACTCGCAGCAGTACTA 58.737 52.632 0.00 0.00 45.36 1.82
5795 8402 3.051210 TGCACTCGCAGCAGTACT 58.949 55.556 0.00 0.00 45.36 2.73
5886 8493 6.916387 CGACTATACTAATCTCCTCGCAAAAA 59.084 38.462 0.00 0.00 0.00 1.94
5887 8494 6.039047 ACGACTATACTAATCTCCTCGCAAAA 59.961 38.462 0.00 0.00 0.00 2.44
5888 8495 5.530171 ACGACTATACTAATCTCCTCGCAAA 59.470 40.000 0.00 0.00 0.00 3.68
5889 8496 5.061853 ACGACTATACTAATCTCCTCGCAA 58.938 41.667 0.00 0.00 0.00 4.85
5890 8497 4.639334 ACGACTATACTAATCTCCTCGCA 58.361 43.478 0.00 0.00 0.00 5.10
5891 8498 5.178996 TCAACGACTATACTAATCTCCTCGC 59.821 44.000 0.00 0.00 0.00 5.03
5892 8499 6.782298 TCAACGACTATACTAATCTCCTCG 57.218 41.667 0.00 0.00 0.00 4.63
5893 8500 8.838365 TCTTTCAACGACTATACTAATCTCCTC 58.162 37.037 0.00 0.00 0.00 3.71
5894 8501 8.623030 GTCTTTCAACGACTATACTAATCTCCT 58.377 37.037 0.00 0.00 0.00 3.69
5895 8502 8.623030 AGTCTTTCAACGACTATACTAATCTCC 58.377 37.037 0.00 0.00 39.80 3.71
5896 8503 9.440784 CAGTCTTTCAACGACTATACTAATCTC 57.559 37.037 0.00 0.00 39.59 2.75
5897 8504 9.175312 TCAGTCTTTCAACGACTATACTAATCT 57.825 33.333 0.00 0.00 39.59 2.40
5898 8505 9.784680 TTCAGTCTTTCAACGACTATACTAATC 57.215 33.333 0.00 0.00 39.59 1.75
5900 8507 9.403110 GTTTCAGTCTTTCAACGACTATACTAA 57.597 33.333 0.00 0.00 39.59 2.24
5901 8508 8.025445 GGTTTCAGTCTTTCAACGACTATACTA 58.975 37.037 0.00 0.00 39.59 1.82
5902 8509 6.867293 GGTTTCAGTCTTTCAACGACTATACT 59.133 38.462 0.00 0.00 39.59 2.12
5903 8510 6.867293 AGGTTTCAGTCTTTCAACGACTATAC 59.133 38.462 0.00 0.00 39.59 1.47
5904 8511 6.989659 AGGTTTCAGTCTTTCAACGACTATA 58.010 36.000 0.00 0.00 39.59 1.31
5905 8512 5.855045 AGGTTTCAGTCTTTCAACGACTAT 58.145 37.500 0.00 0.00 39.59 2.12
5906 8513 5.272283 AGGTTTCAGTCTTTCAACGACTA 57.728 39.130 0.00 0.00 39.59 2.59
5907 8514 4.120589 GAGGTTTCAGTCTTTCAACGACT 58.879 43.478 0.00 0.00 42.17 4.18
5908 8515 3.060473 CGAGGTTTCAGTCTTTCAACGAC 60.060 47.826 0.00 0.00 0.00 4.34
5909 8516 3.120792 CGAGGTTTCAGTCTTTCAACGA 58.879 45.455 0.00 0.00 0.00 3.85
5910 8517 2.348591 GCGAGGTTTCAGTCTTTCAACG 60.349 50.000 0.00 0.00 0.00 4.10
6039 8646 8.307483 AGCGAATAGTGTATGTGCTAGAAATAT 58.693 33.333 0.00 0.00 30.54 1.28
6041 8648 6.516718 AGCGAATAGTGTATGTGCTAGAAAT 58.483 36.000 0.00 0.00 30.54 2.17
6043 8650 5.515797 AGCGAATAGTGTATGTGCTAGAA 57.484 39.130 0.00 0.00 30.54 2.10
6044 8651 6.819397 ATAGCGAATAGTGTATGTGCTAGA 57.181 37.500 0.00 0.00 36.09 2.43
6053 8682 6.947644 TGGACTTGTATAGCGAATAGTGTA 57.052 37.500 0.00 0.00 0.00 2.90
6062 8691 6.363577 ACAAAATCATGGACTTGTATAGCG 57.636 37.500 5.70 0.00 30.41 4.26
6069 8698 8.011106 GCACAATAAAACAAAATCATGGACTTG 58.989 33.333 0.00 0.00 0.00 3.16
6132 8761 9.047947 AGAGGGAGTACTACATTTCTGTAAAAT 57.952 33.333 7.57 0.00 37.41 1.82
6178 8807 5.454520 CGTATGCGTGTATACAAGGATGTA 58.545 41.667 27.47 12.21 45.67 2.29
6179 8808 4.295870 CGTATGCGTGTATACAAGGATGT 58.704 43.478 27.47 12.22 43.74 3.06
6180 8809 4.886009 CGTATGCGTGTATACAAGGATG 57.114 45.455 27.47 13.65 37.07 3.51
6240 8880 2.294512 GCAGACTGGTTTTTGGGAGAAG 59.705 50.000 4.26 0.00 0.00 2.85
6242 8882 1.214175 TGCAGACTGGTTTTTGGGAGA 59.786 47.619 4.26 0.00 0.00 3.71
6245 8885 1.001181 CCATGCAGACTGGTTTTTGGG 59.999 52.381 4.26 0.00 0.00 4.12
6246 8886 1.962807 TCCATGCAGACTGGTTTTTGG 59.037 47.619 4.26 0.00 35.19 3.28
6248 8888 2.365293 GGTTCCATGCAGACTGGTTTTT 59.635 45.455 4.26 0.00 35.19 1.94
6260 8900 3.936772 TTGCTCCCGGGTTCCATGC 62.937 63.158 22.86 15.92 0.00 4.06
6267 8907 1.303282 GGATTTCTTGCTCCCGGGT 59.697 57.895 22.86 0.00 0.00 5.28
6271 8911 1.664873 GGTACGGATTTCTTGCTCCC 58.335 55.000 0.00 0.00 0.00 4.30
6295 8935 2.172505 TCAAGGGCAGTCAAGACTCAAA 59.827 45.455 0.00 0.00 40.20 2.69
6354 8994 2.894879 TGCTTGTGCTCGTGCGTT 60.895 55.556 4.84 0.00 43.34 4.84
6386 9031 6.220726 TCCCTTTTTGGCTCTTATTATTGC 57.779 37.500 0.00 0.00 0.00 3.56
6390 9046 6.096846 GCATCTTCCCTTTTTGGCTCTTATTA 59.903 38.462 0.00 0.00 0.00 0.98
6401 9057 2.415893 CGATTGCGCATCTTCCCTTTTT 60.416 45.455 12.75 0.00 0.00 1.94
6417 9073 1.071019 CTGCTGCTGCTTTGCGATTG 61.071 55.000 17.00 0.00 40.48 2.67
6418 9074 1.211969 CTGCTGCTGCTTTGCGATT 59.788 52.632 17.00 0.00 40.48 3.34
6419 9075 0.674581 TACTGCTGCTGCTTTGCGAT 60.675 50.000 17.00 0.00 40.48 4.58
6420 9076 1.293963 CTACTGCTGCTGCTTTGCGA 61.294 55.000 17.00 0.00 40.48 5.10
6437 9093 2.417379 GCCGAATGCAAGTCTCAGTCTA 60.417 50.000 0.00 0.00 40.77 2.59
6451 9107 3.941483 GGGTATATTCTCCATGCCGAATG 59.059 47.826 14.41 0.00 35.89 2.67
6457 9113 1.679032 GGCCGGGTATATTCTCCATGC 60.679 57.143 2.18 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.