Multiple sequence alignment - TraesCS5B01G210400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G210400 chr5B 100.000 7034 0 0 1 7034 380823094 380816061 0.000000e+00 12990.0
1 TraesCS5B01G210400 chr5D 94.118 3315 112 33 991 4295 327530160 327526919 0.000000e+00 4964.0
2 TraesCS5B01G210400 chr5D 95.957 1410 47 7 5630 7034 327524842 327523438 0.000000e+00 2279.0
3 TraesCS5B01G210400 chr5D 97.149 982 28 0 4291 5272 327526862 327525881 0.000000e+00 1659.0
4 TraesCS5B01G210400 chr5D 90.483 662 56 5 6 664 327531563 327530906 0.000000e+00 867.0
5 TraesCS5B01G210400 chr5D 84.228 298 18 11 5260 5528 327525140 327524843 5.410000e-66 263.0
6 TraesCS5B01G210400 chr5D 86.008 243 21 6 742 971 327530391 327530149 1.520000e-61 248.0
7 TraesCS5B01G210400 chr5D 76.860 363 59 15 420 765 465470345 465469991 1.560000e-41 182.0
8 TraesCS5B01G210400 chr5A 92.983 2437 112 27 991 3410 429164648 429167042 0.000000e+00 3498.0
9 TraesCS5B01G210400 chr5A 94.989 1397 56 8 5650 7034 429169733 429171127 0.000000e+00 2180.0
10 TraesCS5B01G210400 chr5A 94.374 1262 45 13 4291 5527 429168403 429169663 0.000000e+00 1914.0
11 TraesCS5B01G210400 chr5A 93.372 513 19 5 3606 4115 429167289 429167789 0.000000e+00 745.0
12 TraesCS5B01G210400 chr5A 86.589 604 74 4 76 677 429123709 429124307 0.000000e+00 660.0
13 TraesCS5B01G210400 chr5A 86.283 452 35 11 544 971 429164211 429164659 3.840000e-127 466.0
14 TraesCS5B01G210400 chr5A 95.722 187 8 0 4109 4295 429168160 429168346 1.150000e-77 302.0
15 TraesCS5B01G210400 chr5A 88.202 178 15 2 1226 1403 429163589 429163760 2.570000e-49 207.0
16 TraesCS5B01G210400 chr5A 94.488 127 6 1 5509 5634 490502784 490502658 2.000000e-45 195.0
17 TraesCS5B01G210400 chr5A 87.736 106 9 2 388 492 429164110 429164212 3.450000e-23 121.0
18 TraesCS5B01G210400 chr2B 80.967 331 55 6 5728 6054 66561104 66560778 9.050000e-64 255.0
19 TraesCS5B01G210400 chr2B 98.214 112 2 0 5521 5632 10219954 10220065 5.570000e-46 196.0
20 TraesCS5B01G210400 chr2D 80.363 331 56 4 5728 6052 38095325 38094998 7.050000e-60 243.0
21 TraesCS5B01G210400 chr2D 95.652 46 2 0 5975 6020 468131542 468131497 2.720000e-09 75.0
22 TraesCS5B01G210400 chr4B 98.246 114 2 0 5522 5635 646113821 646113934 4.300000e-47 200.0
23 TraesCS5B01G210400 chr6D 95.935 123 3 2 5517 5638 455247115 455247236 1.550000e-46 198.0
24 TraesCS5B01G210400 chr1B 99.091 110 1 0 5525 5634 582724245 582724136 1.550000e-46 198.0
25 TraesCS5B01G210400 chr1B 97.391 115 2 1 5521 5634 395249026 395248912 2.000000e-45 195.0
26 TraesCS5B01G210400 chr6B 96.581 117 3 1 5523 5639 679979078 679978963 7.200000e-45 193.0
27 TraesCS5B01G210400 chr2A 97.273 110 3 0 5525 5634 735006857 735006748 3.350000e-43 187.0
28 TraesCS5B01G210400 chr2A 88.333 60 7 0 5967 6026 4978806 4978865 9.790000e-09 73.1
29 TraesCS5B01G210400 chr4D 91.304 138 7 5 5518 5653 160742375 160742241 4.330000e-42 183.0
30 TraesCS5B01G210400 chr4D 93.478 46 3 0 5976 6021 443521093 443521048 1.270000e-07 69.4
31 TraesCS5B01G210400 chr7D 83.750 80 13 0 5976 6055 458726772 458726693 7.570000e-10 76.8
32 TraesCS5B01G210400 chr7B 83.750 80 13 0 5976 6055 480694858 480694779 7.570000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G210400 chr5B 380816061 380823094 7033 True 12990.000000 12990 100.000000 1 7034 1 chr5B.!!$R1 7033
1 TraesCS5B01G210400 chr5D 327523438 327531563 8125 True 1713.333333 4964 91.323833 6 7034 6 chr5D.!!$R2 7028
2 TraesCS5B01G210400 chr5A 429163589 429171127 7538 False 1179.125000 3498 91.707625 388 7034 8 chr5A.!!$F2 6646
3 TraesCS5B01G210400 chr5A 429123709 429124307 598 False 660.000000 660 86.589000 76 677 1 chr5A.!!$F1 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
664 881 0.040157 CAATGCACCGTGTCAACAGG 60.040 55.000 0.00 0.00 0.00 4.00 F
982 1654 0.179094 GTCCACCGAATCCGCACATA 60.179 55.000 0.00 0.00 0.00 2.29 F
1871 2561 0.188342 ACCCCAAATGCACTCACCTT 59.812 50.000 0.00 0.00 0.00 3.50 F
2179 2875 0.602638 TCTGCCAAGTTACCAGTGCG 60.603 55.000 2.89 0.00 0.00 5.34 F
2747 3443 0.817654 TCATCTTCACGCGACATCCT 59.182 50.000 15.93 0.00 0.00 3.24 F
3661 4456 1.210478 ACGGATTGCAATCTACAGGCT 59.790 47.619 32.48 9.82 35.73 4.58 F
5552 7569 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2645 3341 0.103572 GCATCATTTGGCCGATTGCT 59.896 50.000 9.67 0.00 40.92 3.91 R
2646 3342 0.179105 TGCATCATTTGGCCGATTGC 60.179 50.000 9.67 9.64 40.16 3.56 R
3495 4196 2.065899 TTCCCTTTGAACACACAGGG 57.934 50.000 13.38 13.38 46.99 4.45 R
3666 4461 2.302199 TAGCTCATGCCACCTCAGCG 62.302 60.000 0.00 0.00 40.80 5.18 R
4197 5372 2.092103 GCAAGGGTATACCAACATCCCA 60.092 50.000 23.33 0.00 43.89 4.37 R
5614 7631 0.033796 ATGTACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55 R
6845 8875 1.062587 GAACCAGAAATGCACGGATCG 59.937 52.381 0.00 0.00 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.181010 CGGCCATGGGTCTGGGAG 62.181 72.222 15.13 0.00 36.75 4.30
55 56 0.995024 AAAGCTGGGCTAGGATGTGT 59.005 50.000 0.00 0.00 38.25 3.72
59 60 1.762957 GCTGGGCTAGGATGTGTTCTA 59.237 52.381 0.00 0.00 0.00 2.10
71 72 4.381612 GGATGTGTTCTAGTCCGATGACAA 60.382 45.833 0.00 0.00 44.33 3.18
83 84 1.063027 CGATGACAACGATGCTTGCAT 59.937 47.619 7.91 7.91 0.00 3.96
132 133 1.229428 ATGCAGTTCTGGTCACGTTG 58.771 50.000 0.00 0.00 0.00 4.10
133 134 1.279840 GCAGTTCTGGTCACGTTGC 59.720 57.895 1.97 0.00 0.00 4.17
134 135 1.941812 CAGTTCTGGTCACGTTGCC 59.058 57.895 0.00 0.00 0.00 4.52
135 136 1.227853 AGTTCTGGTCACGTTGCCC 60.228 57.895 3.04 0.00 0.00 5.36
137 138 0.818040 GTTCTGGTCACGTTGCCCTT 60.818 55.000 3.04 0.00 0.00 3.95
138 139 0.817634 TTCTGGTCACGTTGCCCTTG 60.818 55.000 3.04 0.00 0.00 3.61
140 141 1.077357 TGGTCACGTTGCCCTTGTT 60.077 52.632 3.04 0.00 0.00 2.83
141 142 1.358759 GGTCACGTTGCCCTTGTTG 59.641 57.895 0.00 0.00 0.00 3.33
143 144 1.453015 TCACGTTGCCCTTGTTGCT 60.453 52.632 0.00 0.00 0.00 3.91
144 145 1.008538 CACGTTGCCCTTGTTGCTC 60.009 57.895 0.00 0.00 0.00 4.26
145 146 2.193536 ACGTTGCCCTTGTTGCTCC 61.194 57.895 0.00 0.00 0.00 4.70
146 147 2.644992 GTTGCCCTTGTTGCTCCG 59.355 61.111 0.00 0.00 0.00 4.63
147 148 2.597217 TTGCCCTTGTTGCTCCGG 60.597 61.111 0.00 0.00 0.00 5.14
148 149 3.429372 TTGCCCTTGTTGCTCCGGT 62.429 57.895 0.00 0.00 0.00 5.28
149 150 3.365265 GCCCTTGTTGCTCCGGTG 61.365 66.667 0.00 0.00 0.00 4.94
150 151 2.672996 CCCTTGTTGCTCCGGTGG 60.673 66.667 0.00 0.00 0.00 4.61
151 152 2.429930 CCTTGTTGCTCCGGTGGA 59.570 61.111 0.00 0.00 0.00 4.02
152 153 1.228124 CCTTGTTGCTCCGGTGGAA 60.228 57.895 6.34 6.34 0.00 3.53
153 154 0.821711 CCTTGTTGCTCCGGTGGAAA 60.822 55.000 12.25 0.00 0.00 3.13
154 155 1.247567 CTTGTTGCTCCGGTGGAAAT 58.752 50.000 12.25 0.00 0.00 2.17
156 157 0.109532 TGTTGCTCCGGTGGAAATCA 59.890 50.000 12.25 4.61 0.00 2.57
166 167 1.094785 GTGGAAATCACATGTCCGGG 58.905 55.000 0.00 0.00 45.39 5.73
167 168 0.695924 TGGAAATCACATGTCCGGGT 59.304 50.000 0.00 0.00 33.87 5.28
168 169 1.074727 TGGAAATCACATGTCCGGGTT 59.925 47.619 0.00 0.00 33.87 4.11
170 171 2.159382 GAAATCACATGTCCGGGTTGT 58.841 47.619 0.00 0.00 0.00 3.32
171 172 1.821216 AATCACATGTCCGGGTTGTC 58.179 50.000 0.00 0.00 0.00 3.18
173 174 0.320374 TCACATGTCCGGGTTGTCTC 59.680 55.000 0.00 0.00 0.00 3.36
181 182 2.499685 GGGTTGTCTCGGATCGGG 59.500 66.667 0.00 0.00 0.00 5.14
182 183 2.202892 GGTTGTCTCGGATCGGGC 60.203 66.667 0.00 0.00 0.00 6.13
183 184 2.577059 GTTGTCTCGGATCGGGCA 59.423 61.111 0.00 0.00 0.00 5.36
184 185 1.079405 GTTGTCTCGGATCGGGCAA 60.079 57.895 0.00 0.00 0.00 4.52
185 186 0.462047 GTTGTCTCGGATCGGGCAAT 60.462 55.000 0.00 0.00 29.84 3.56
186 187 0.461870 TTGTCTCGGATCGGGCAATG 60.462 55.000 0.00 0.00 0.00 2.82
187 188 1.595382 GTCTCGGATCGGGCAATGG 60.595 63.158 0.00 0.00 0.00 3.16
189 190 4.908687 TCGGATCGGGCAATGGCG 62.909 66.667 0.00 0.00 42.47 5.69
196 197 4.133796 GGGCAATGGCGGCACTTC 62.134 66.667 16.34 0.00 42.47 3.01
197 198 3.064324 GGCAATGGCGGCACTTCT 61.064 61.111 16.34 0.00 42.47 2.85
198 199 2.180017 GCAATGGCGGCACTTCTG 59.820 61.111 16.34 10.76 0.00 3.02
199 200 2.629656 GCAATGGCGGCACTTCTGT 61.630 57.895 16.34 0.00 0.00 3.41
200 201 1.503542 CAATGGCGGCACTTCTGTC 59.496 57.895 16.34 0.00 0.00 3.51
201 202 1.073025 AATGGCGGCACTTCTGTCA 59.927 52.632 16.34 0.00 40.45 3.58
203 204 3.414700 GGCGGCACTTCTGTCACG 61.415 66.667 3.07 0.00 0.00 4.35
204 205 3.414700 GCGGCACTTCTGTCACGG 61.415 66.667 0.00 0.00 0.00 4.94
205 206 2.029073 CGGCACTTCTGTCACGGT 59.971 61.111 0.00 0.00 0.00 4.83
206 207 1.594293 CGGCACTTCTGTCACGGTT 60.594 57.895 0.00 0.00 0.00 4.44
207 208 1.157870 CGGCACTTCTGTCACGGTTT 61.158 55.000 0.00 0.00 0.00 3.27
208 209 0.586802 GGCACTTCTGTCACGGTTTC 59.413 55.000 0.00 0.00 0.00 2.78
209 210 0.586802 GCACTTCTGTCACGGTTTCC 59.413 55.000 0.00 0.00 0.00 3.13
210 211 1.810412 GCACTTCTGTCACGGTTTCCT 60.810 52.381 0.00 0.00 0.00 3.36
211 212 2.135933 CACTTCTGTCACGGTTTCCTC 58.864 52.381 0.00 0.00 0.00 3.71
212 213 2.040178 ACTTCTGTCACGGTTTCCTCT 58.960 47.619 0.00 0.00 0.00 3.69
214 215 2.526304 TCTGTCACGGTTTCCTCTTG 57.474 50.000 0.00 0.00 0.00 3.02
216 217 2.035961 TCTGTCACGGTTTCCTCTTGAG 59.964 50.000 0.00 0.00 0.00 3.02
218 219 2.223971 TGTCACGGTTTCCTCTTGAGAC 60.224 50.000 0.00 0.00 0.00 3.36
219 220 2.036387 TCACGGTTTCCTCTTGAGACA 58.964 47.619 0.00 0.00 29.74 3.41
220 221 2.632996 TCACGGTTTCCTCTTGAGACAT 59.367 45.455 0.00 0.00 29.74 3.06
221 222 2.996621 CACGGTTTCCTCTTGAGACATC 59.003 50.000 0.00 0.00 29.74 3.06
222 223 2.028020 ACGGTTTCCTCTTGAGACATCC 60.028 50.000 0.00 0.00 29.74 3.51
224 225 2.573915 GGTTTCCTCTTGAGACATCCCT 59.426 50.000 0.00 0.00 29.74 4.20
225 226 3.009584 GGTTTCCTCTTGAGACATCCCTT 59.990 47.826 0.00 0.00 29.74 3.95
226 227 4.507512 GGTTTCCTCTTGAGACATCCCTTT 60.508 45.833 0.00 0.00 29.74 3.11
227 228 3.988976 TCCTCTTGAGACATCCCTTTG 57.011 47.619 0.00 0.00 0.00 2.77
228 229 3.520696 TCCTCTTGAGACATCCCTTTGA 58.479 45.455 0.00 0.00 0.00 2.69
229 230 3.909995 TCCTCTTGAGACATCCCTTTGAA 59.090 43.478 0.00 0.00 0.00 2.69
230 231 4.019860 TCCTCTTGAGACATCCCTTTGAAG 60.020 45.833 0.00 0.00 0.00 3.02
231 232 3.679389 TCTTGAGACATCCCTTTGAAGC 58.321 45.455 0.00 0.00 0.00 3.86
232 233 3.328931 TCTTGAGACATCCCTTTGAAGCT 59.671 43.478 0.00 0.00 0.00 3.74
233 234 4.532126 TCTTGAGACATCCCTTTGAAGCTA 59.468 41.667 0.00 0.00 0.00 3.32
234 235 4.478206 TGAGACATCCCTTTGAAGCTAG 57.522 45.455 0.00 0.00 0.00 3.42
235 236 3.840666 TGAGACATCCCTTTGAAGCTAGT 59.159 43.478 0.00 0.00 0.00 2.57
236 237 4.081420 TGAGACATCCCTTTGAAGCTAGTC 60.081 45.833 0.00 0.00 0.00 2.59
237 238 3.198853 AGACATCCCTTTGAAGCTAGTCC 59.801 47.826 0.00 0.00 0.00 3.85
238 239 2.239907 ACATCCCTTTGAAGCTAGTCCC 59.760 50.000 0.00 0.00 0.00 4.46
239 240 0.902531 TCCCTTTGAAGCTAGTCCCG 59.097 55.000 0.00 0.00 0.00 5.14
240 241 0.902531 CCCTTTGAAGCTAGTCCCGA 59.097 55.000 0.00 0.00 0.00 5.14
241 242 1.405661 CCCTTTGAAGCTAGTCCCGAC 60.406 57.143 0.00 0.00 0.00 4.79
243 244 2.758979 CCTTTGAAGCTAGTCCCGACTA 59.241 50.000 4.57 4.57 42.54 2.59
256 257 2.369001 GACTAGAGGGGGCCTGGT 59.631 66.667 0.84 0.00 31.76 4.00
257 258 2.041265 ACTAGAGGGGGCCTGGTG 59.959 66.667 0.84 0.00 31.76 4.17
258 259 2.770048 CTAGAGGGGGCCTGGTGG 60.770 72.222 0.84 0.00 31.76 4.61
259 260 4.431524 TAGAGGGGGCCTGGTGGG 62.432 72.222 0.84 0.00 31.76 4.61
268 269 4.284550 CCTGGTGGGTGGTGGTGG 62.285 72.222 0.00 0.00 0.00 4.61
269 270 3.498071 CTGGTGGGTGGTGGTGGT 61.498 66.667 0.00 0.00 0.00 4.16
270 271 3.491598 CTGGTGGGTGGTGGTGGTC 62.492 68.421 0.00 0.00 0.00 4.02
273 274 3.552384 TGGGTGGTGGTGGTCGTC 61.552 66.667 0.00 0.00 0.00 4.20
274 275 3.552384 GGGTGGTGGTGGTCGTCA 61.552 66.667 0.00 0.00 0.00 4.35
275 276 2.030562 GGTGGTGGTGGTCGTCAG 59.969 66.667 0.00 0.00 0.00 3.51
276 277 2.665185 GTGGTGGTGGTCGTCAGC 60.665 66.667 4.33 4.33 43.68 4.26
282 283 1.875963 GGTGGTCGTCAGCAATTGG 59.124 57.895 7.72 0.00 42.97 3.16
283 284 0.889186 GGTGGTCGTCAGCAATTGGT 60.889 55.000 3.82 3.82 42.97 3.67
284 285 0.238289 GTGGTCGTCAGCAATTGGTG 59.762 55.000 27.73 27.73 44.29 4.17
285 286 0.179032 TGGTCGTCAGCAATTGGTGT 60.179 50.000 30.77 0.00 43.46 4.16
287 288 0.238289 GTCGTCAGCAATTGGTGTGG 59.762 55.000 30.77 23.91 43.46 4.17
288 289 1.081242 CGTCAGCAATTGGTGTGGC 60.081 57.895 30.77 21.77 43.46 5.01
289 290 1.794151 CGTCAGCAATTGGTGTGGCA 61.794 55.000 30.77 13.88 43.46 4.92
290 291 0.388659 GTCAGCAATTGGTGTGGCAA 59.611 50.000 30.77 13.54 43.46 4.52
293 294 0.322322 AGCAATTGGTGTGGCAATGG 59.678 50.000 9.83 0.00 0.00 3.16
294 295 1.300266 GCAATTGGTGTGGCAATGGC 61.300 55.000 7.72 0.00 40.13 4.40
296 297 1.184322 AATTGGTGTGGCAATGGCGA 61.184 50.000 1.51 0.00 42.47 5.54
297 298 0.971959 ATTGGTGTGGCAATGGCGAT 60.972 50.000 1.51 0.00 42.47 4.58
298 299 1.875420 TTGGTGTGGCAATGGCGATG 61.875 55.000 1.51 0.00 42.47 3.84
299 300 2.342650 GGTGTGGCAATGGCGATGT 61.343 57.895 1.51 0.00 42.47 3.06
300 301 1.153978 GTGTGGCAATGGCGATGTG 60.154 57.895 1.51 0.00 42.47 3.21
302 303 0.892814 TGTGGCAATGGCGATGTGAA 60.893 50.000 1.51 0.00 42.47 3.18
304 305 0.456628 TGGCAATGGCGATGTGAATG 59.543 50.000 1.51 0.00 42.47 2.67
306 307 1.204228 GCAATGGCGATGTGAATGCG 61.204 55.000 0.00 0.00 0.00 4.73
308 309 0.099259 AATGGCGATGTGAATGCGTG 59.901 50.000 0.00 0.00 0.00 5.34
309 310 0.744057 ATGGCGATGTGAATGCGTGA 60.744 50.000 0.00 0.00 0.00 4.35
310 311 1.060937 GGCGATGTGAATGCGTGAC 59.939 57.895 0.00 0.00 0.00 3.67
311 312 1.296145 GCGATGTGAATGCGTGACG 60.296 57.895 0.00 0.00 0.00 4.35
313 314 1.060937 GATGTGAATGCGTGACGGC 59.939 57.895 7.25 0.00 0.00 5.68
314 315 2.309764 GATGTGAATGCGTGACGGCC 62.310 60.000 7.25 0.00 0.00 6.13
315 316 2.742372 GTGAATGCGTGACGGCCT 60.742 61.111 7.25 0.00 0.00 5.19
316 317 2.741985 TGAATGCGTGACGGCCTG 60.742 61.111 7.25 0.00 0.00 4.85
317 318 3.499737 GAATGCGTGACGGCCTGG 61.500 66.667 7.25 0.00 0.00 4.45
318 319 4.329545 AATGCGTGACGGCCTGGT 62.330 61.111 7.25 0.00 0.00 4.00
322 323 2.340809 CGTGACGGCCTGGTTGTA 59.659 61.111 0.00 0.00 0.00 2.41
323 324 1.736645 CGTGACGGCCTGGTTGTAG 60.737 63.158 0.00 0.00 0.00 2.74
324 325 1.370064 GTGACGGCCTGGTTGTAGT 59.630 57.895 0.00 0.00 0.00 2.73
326 327 0.892755 TGACGGCCTGGTTGTAGTAG 59.107 55.000 0.00 0.00 0.00 2.57
327 328 0.893447 GACGGCCTGGTTGTAGTAGT 59.107 55.000 0.00 0.00 0.00 2.73
329 330 0.179145 CGGCCTGGTTGTAGTAGTCG 60.179 60.000 0.00 0.00 0.00 4.18
330 331 1.180029 GGCCTGGTTGTAGTAGTCGA 58.820 55.000 0.00 0.00 0.00 4.20
331 332 1.135170 GGCCTGGTTGTAGTAGTCGAC 60.135 57.143 7.70 7.70 0.00 4.20
334 335 2.422832 CCTGGTTGTAGTAGTCGACTCC 59.577 54.545 23.89 15.53 39.81 3.85
335 336 3.345414 CTGGTTGTAGTAGTCGACTCCT 58.655 50.000 23.89 19.25 39.81 3.69
336 337 3.341823 TGGTTGTAGTAGTCGACTCCTC 58.658 50.000 23.89 13.72 39.81 3.71
337 338 2.351111 GGTTGTAGTAGTCGACTCCTCG 59.649 54.545 23.89 0.00 39.81 4.63
338 339 3.257393 GTTGTAGTAGTCGACTCCTCGA 58.743 50.000 23.89 7.33 46.85 4.04
344 345 4.054085 TCGACTCCTCGACGTGTT 57.946 55.556 0.00 0.00 44.14 3.32
346 347 0.881600 TCGACTCCTCGACGTGTTCA 60.882 55.000 0.00 0.00 44.14 3.18
348 349 0.386985 GACTCCTCGACGTGTTCACC 60.387 60.000 0.00 0.00 0.00 4.02
353 354 1.129326 CTCGACGTGTTCACCTGTTC 58.871 55.000 0.00 0.00 0.00 3.18
354 355 0.456628 TCGACGTGTTCACCTGTTCA 59.543 50.000 0.00 0.00 0.00 3.18
357 358 1.455786 GACGTGTTCACCTGTTCATCG 59.544 52.381 0.00 0.00 0.00 3.84
358 359 1.202486 ACGTGTTCACCTGTTCATCGT 60.202 47.619 0.00 0.00 0.00 3.73
360 361 1.531149 GTGTTCACCTGTTCATCGTGG 59.469 52.381 0.00 0.00 0.00 4.94
362 363 1.052617 TTCACCTGTTCATCGTGGGA 58.947 50.000 0.00 0.00 0.00 4.37
363 364 1.275666 TCACCTGTTCATCGTGGGAT 58.724 50.000 0.00 0.00 0.00 3.85
373 374 3.925688 CATCGTGGGATGTTTTCTACG 57.074 47.619 0.00 0.00 44.12 3.51
374 375 3.517602 CATCGTGGGATGTTTTCTACGA 58.482 45.455 4.60 4.60 44.12 3.43
378 379 3.930229 CGTGGGATGTTTTCTACGATGAA 59.070 43.478 0.00 0.00 37.19 2.57
379 380 4.032900 CGTGGGATGTTTTCTACGATGAAG 59.967 45.833 0.00 0.00 37.19 3.02
381 382 5.063564 GTGGGATGTTTTCTACGATGAAGTC 59.936 44.000 0.00 0.00 0.00 3.01
417 633 1.349234 TCGTGCGACAAGATGACATG 58.651 50.000 0.00 0.00 0.00 3.21
418 634 0.247419 CGTGCGACAAGATGACATGC 60.247 55.000 0.00 0.00 0.00 4.06
419 635 0.247419 GTGCGACAAGATGACATGCG 60.247 55.000 0.00 0.00 0.00 4.73
454 670 0.305922 GCTTGATGATTCTTCGCGGG 59.694 55.000 6.13 0.00 0.00 6.13
528 744 2.738846 CTGTTATGGCGTATGGCTGATC 59.261 50.000 10.19 0.00 42.94 2.92
534 750 1.599542 GGCGTATGGCTGATCTTTCAC 59.400 52.381 0.27 0.00 42.94 3.18
610 827 0.250124 TTGATTGCGGTGAAGTCGGT 60.250 50.000 0.00 0.00 0.00 4.69
629 846 4.313819 TCGCTTGTCGAGGAGCTA 57.686 55.556 15.55 4.63 43.16 3.32
655 872 2.359850 ATGACGCCAATGCACCGT 60.360 55.556 0.00 0.00 37.32 4.83
664 881 0.040157 CAATGCACCGTGTCAACAGG 60.040 55.000 0.00 0.00 0.00 4.00
677 894 1.077625 AACAGGGCTCTCTCCTCGT 59.922 57.895 0.00 0.00 31.06 4.18
689 906 2.490217 CCTCGTAGCGGTGTGAGG 59.510 66.667 18.56 18.56 41.82 3.86
697 914 1.080025 GCGGTGTGAGGGTAGTGTC 60.080 63.158 0.00 0.00 0.00 3.67
766 1420 3.553828 AACCGGACAACTCTTTCTTCA 57.446 42.857 9.46 0.00 0.00 3.02
806 1460 9.476202 AAATCACAACTCTTTTGCCTTATTAAC 57.524 29.630 0.00 0.00 0.00 2.01
807 1461 7.817418 TCACAACTCTTTTGCCTTATTAACT 57.183 32.000 0.00 0.00 0.00 2.24
808 1462 8.232913 TCACAACTCTTTTGCCTTATTAACTT 57.767 30.769 0.00 0.00 0.00 2.66
809 1463 8.134895 TCACAACTCTTTTGCCTTATTAACTTG 58.865 33.333 0.00 0.00 0.00 3.16
810 1464 6.923508 ACAACTCTTTTGCCTTATTAACTTGC 59.076 34.615 0.00 0.00 0.00 4.01
841 1508 0.839946 AACACTGTCAGCCTCCTTGT 59.160 50.000 0.00 0.00 0.00 3.16
856 1528 5.569413 CCTCCTTGTATTCAATAACGCAAC 58.431 41.667 0.00 0.00 32.82 4.17
857 1529 5.123186 CCTCCTTGTATTCAATAACGCAACA 59.877 40.000 0.00 0.00 32.82 3.33
862 1534 6.978024 TGTATTCAATAACGCAACAAACAC 57.022 33.333 0.00 0.00 0.00 3.32
910 1582 0.960364 GCATGGACGGTGACACCATT 60.960 55.000 24.18 10.39 42.59 3.16
919 1591 1.546773 GGTGACACCATTAGGGCACAA 60.547 52.381 20.14 0.00 42.05 3.33
972 1644 2.741092 GACAGGCTGTCCACCGAA 59.259 61.111 32.55 0.00 41.37 4.30
973 1645 1.296715 GACAGGCTGTCCACCGAAT 59.703 57.895 32.55 1.94 41.37 3.34
974 1646 0.741221 GACAGGCTGTCCACCGAATC 60.741 60.000 32.55 8.80 41.37 2.52
975 1647 1.450312 CAGGCTGTCCACCGAATCC 60.450 63.158 6.28 0.00 33.74 3.01
976 1648 2.511600 GGCTGTCCACCGAATCCG 60.512 66.667 0.00 0.00 0.00 4.18
977 1649 3.195698 GCTGTCCACCGAATCCGC 61.196 66.667 0.00 0.00 0.00 5.54
978 1650 2.264480 CTGTCCACCGAATCCGCA 59.736 61.111 0.00 0.00 0.00 5.69
979 1651 2.047655 TGTCCACCGAATCCGCAC 60.048 61.111 0.00 0.00 0.00 5.34
980 1652 2.047655 GTCCACCGAATCCGCACA 60.048 61.111 0.00 0.00 0.00 4.57
981 1653 1.449601 GTCCACCGAATCCGCACAT 60.450 57.895 0.00 0.00 0.00 3.21
982 1654 0.179094 GTCCACCGAATCCGCACATA 60.179 55.000 0.00 0.00 0.00 2.29
983 1655 0.537653 TCCACCGAATCCGCACATAA 59.462 50.000 0.00 0.00 0.00 1.90
984 1656 1.066071 TCCACCGAATCCGCACATAAA 60.066 47.619 0.00 0.00 0.00 1.40
985 1657 1.063469 CCACCGAATCCGCACATAAAC 59.937 52.381 0.00 0.00 0.00 2.01
986 1658 1.735018 CACCGAATCCGCACATAAACA 59.265 47.619 0.00 0.00 0.00 2.83
987 1659 2.354510 CACCGAATCCGCACATAAACAT 59.645 45.455 0.00 0.00 0.00 2.71
988 1660 3.013921 ACCGAATCCGCACATAAACATT 58.986 40.909 0.00 0.00 0.00 2.71
989 1661 3.064820 ACCGAATCCGCACATAAACATTC 59.935 43.478 0.00 0.00 0.00 2.67
990 1662 3.279950 CGAATCCGCACATAAACATTCG 58.720 45.455 0.00 0.00 37.40 3.34
991 1663 3.617669 GAATCCGCACATAAACATTCGG 58.382 45.455 0.00 0.00 38.34 4.30
992 1664 0.730265 TCCGCACATAAACATTCGGC 59.270 50.000 0.00 0.00 37.06 5.54
993 1665 0.732571 CCGCACATAAACATTCGGCT 59.267 50.000 0.00 0.00 0.00 5.52
994 1666 1.268032 CCGCACATAAACATTCGGCTC 60.268 52.381 0.00 0.00 0.00 4.70
995 1667 1.665679 CGCACATAAACATTCGGCTCT 59.334 47.619 0.00 0.00 0.00 4.09
996 1668 2.863740 CGCACATAAACATTCGGCTCTA 59.136 45.455 0.00 0.00 0.00 2.43
1018 1690 3.374402 CGGGTCGTCTCTGCCACT 61.374 66.667 0.00 0.00 0.00 4.00
1043 1718 5.452078 TGCCACTGAACTTCCATTAAAAG 57.548 39.130 0.00 0.00 0.00 2.27
1044 1719 4.280677 TGCCACTGAACTTCCATTAAAAGG 59.719 41.667 0.00 0.00 0.00 3.11
1060 1735 2.133858 AAGGGACAGAAAGAAGGGGA 57.866 50.000 0.00 0.00 0.00 4.81
1101 1778 0.234106 GTCACTTCGTCGTCGTCTCA 59.766 55.000 1.33 0.00 38.33 3.27
1159 1836 2.770048 CCGCCCCTCATCTCCCTT 60.770 66.667 0.00 0.00 0.00 3.95
1160 1837 2.812619 CCGCCCCTCATCTCCCTTC 61.813 68.421 0.00 0.00 0.00 3.46
1161 1838 2.812619 CGCCCCTCATCTCCCTTCC 61.813 68.421 0.00 0.00 0.00 3.46
1162 1839 2.456443 GCCCCTCATCTCCCTTCCC 61.456 68.421 0.00 0.00 0.00 3.97
1163 1840 1.772156 CCCCTCATCTCCCTTCCCC 60.772 68.421 0.00 0.00 0.00 4.81
1164 1841 1.319799 CCCTCATCTCCCTTCCCCT 59.680 63.158 0.00 0.00 0.00 4.79
1245 1926 2.874701 GTCATCGCCATCAGCATTAACT 59.125 45.455 0.00 0.00 44.04 2.24
1246 1927 3.059325 GTCATCGCCATCAGCATTAACTC 60.059 47.826 0.00 0.00 44.04 3.01
1247 1928 1.953559 TCGCCATCAGCATTAACTCC 58.046 50.000 0.00 0.00 44.04 3.85
1248 1929 1.486310 TCGCCATCAGCATTAACTCCT 59.514 47.619 0.00 0.00 44.04 3.69
1249 1930 1.869767 CGCCATCAGCATTAACTCCTC 59.130 52.381 0.00 0.00 44.04 3.71
1250 1931 1.869767 GCCATCAGCATTAACTCCTCG 59.130 52.381 0.00 0.00 42.97 4.63
1251 1932 2.743183 GCCATCAGCATTAACTCCTCGT 60.743 50.000 0.00 0.00 42.97 4.18
1252 1933 3.126831 CCATCAGCATTAACTCCTCGTC 58.873 50.000 0.00 0.00 0.00 4.20
1310 1999 0.477597 TCCAATCCAACCACCTCCCT 60.478 55.000 0.00 0.00 0.00 4.20
1311 2000 0.409484 CCAATCCAACCACCTCCCTT 59.591 55.000 0.00 0.00 0.00 3.95
1347 2037 2.328589 CCTCCCTCTCCTCTCCCCA 61.329 68.421 0.00 0.00 0.00 4.96
1356 2046 0.931468 TCCTCTCCCCATAGGTTCGA 59.069 55.000 0.00 0.00 36.75 3.71
1383 2073 2.028125 GATCCTCACCGAATCCGCCA 62.028 60.000 0.00 0.00 0.00 5.69
1537 2227 3.883549 GGGATGCAGCCCTCCTCC 61.884 72.222 33.03 12.47 45.12 4.30
1668 2358 1.005450 GGGGCTGTCCAAAGGTGAATA 59.995 52.381 0.00 0.00 37.22 1.75
1669 2359 2.369394 GGGCTGTCCAAAGGTGAATAG 58.631 52.381 0.00 0.00 35.00 1.73
1670 2360 2.026262 GGGCTGTCCAAAGGTGAATAGA 60.026 50.000 0.00 0.00 35.00 1.98
1684 2374 5.105146 AGGTGAATAGAGTTTGCTTCTCGAT 60.105 40.000 0.00 0.00 37.07 3.59
1698 2388 1.284785 TCTCGATTTTGGCCTGGGATT 59.715 47.619 3.32 0.00 0.00 3.01
1699 2389 1.406539 CTCGATTTTGGCCTGGGATTG 59.593 52.381 3.32 0.00 0.00 2.67
1700 2390 0.461135 CGATTTTGGCCTGGGATTGG 59.539 55.000 3.32 0.00 0.00 3.16
1701 2391 0.832626 GATTTTGGCCTGGGATTGGG 59.167 55.000 3.32 0.00 0.00 4.12
1702 2392 0.417035 ATTTTGGCCTGGGATTGGGA 59.583 50.000 3.32 0.00 0.00 4.37
1703 2393 0.417035 TTTTGGCCTGGGATTGGGAT 59.583 50.000 3.32 0.00 0.00 3.85
1704 2394 1.313889 TTTGGCCTGGGATTGGGATA 58.686 50.000 3.32 0.00 0.00 2.59
1717 2407 2.806945 TGGGATAGCTTGAAAGGTGG 57.193 50.000 5.04 0.00 37.33 4.61
1718 2408 1.992557 TGGGATAGCTTGAAAGGTGGT 59.007 47.619 5.04 0.00 37.33 4.16
1778 2468 7.413644 GTTTGGGGAATTTTTGTGTTTGTATG 58.586 34.615 0.00 0.00 0.00 2.39
1780 2470 6.051717 TGGGGAATTTTTGTGTTTGTATGTG 58.948 36.000 0.00 0.00 0.00 3.21
1814 2504 0.907230 GGAGTCAGGTGAAGGAGGCT 60.907 60.000 0.00 0.00 0.00 4.58
1817 2507 2.045536 CAGGTGAAGGAGGCTGCC 60.046 66.667 11.65 11.65 0.00 4.85
1835 2525 3.894947 GAGAGGCTCGGAGGCGAC 61.895 72.222 23.65 20.60 46.58 5.19
1871 2561 0.188342 ACCCCAAATGCACTCACCTT 59.812 50.000 0.00 0.00 0.00 3.50
1909 2599 4.223320 TGCCATCGTCTGTTTTTCTTTC 57.777 40.909 0.00 0.00 0.00 2.62
1916 2606 6.503589 TCGTCTGTTTTTCTTTCCTTTTCA 57.496 33.333 0.00 0.00 0.00 2.69
2166 2862 2.172505 TCTTCCTGTTCTGTTTCTGCCA 59.827 45.455 0.00 0.00 0.00 4.92
2179 2875 0.602638 TCTGCCAAGTTACCAGTGCG 60.603 55.000 2.89 0.00 0.00 5.34
2188 2884 1.993370 GTTACCAGTGCGTCATCTGAC 59.007 52.381 0.07 0.07 41.47 3.51
2368 3064 1.202734 AGCATGCTCAGACACAACACT 60.203 47.619 16.30 0.00 0.00 3.55
2488 3184 7.092712 TGAGATGAAGAAGAAGGTATGTCCATT 60.093 37.037 0.00 0.00 39.02 3.16
2520 3216 4.096231 TGCTTCATTCCATAATGGTTGACG 59.904 41.667 0.00 3.33 42.40 4.35
2652 3348 8.893219 AGATAGATAGATAGAGAGAGCAATCG 57.107 38.462 0.00 0.00 0.00 3.34
2704 3400 6.991485 AAAAATCAGTTTACAAGCATCACG 57.009 33.333 0.00 0.00 0.00 4.35
2747 3443 0.817654 TCATCTTCACGCGACATCCT 59.182 50.000 15.93 0.00 0.00 3.24
2770 3466 5.433081 TTGTTAAATTGCGCGAATGATTG 57.567 34.783 12.10 0.00 0.00 2.67
2973 3670 5.123186 TGCAATAATAACCTCTTGTGTTCCG 59.877 40.000 0.00 0.00 0.00 4.30
3229 3926 7.609760 ATCCAAAGTTTTCCTTTCAACAAAC 57.390 32.000 0.00 0.00 41.51 2.93
3495 4196 4.891168 TCTTTGTTAGGTGTCTTTTTCCCC 59.109 41.667 0.00 0.00 0.00 4.81
3496 4197 3.232720 TGTTAGGTGTCTTTTTCCCCC 57.767 47.619 0.00 0.00 0.00 5.40
3525 4226 5.062934 GTGTTCAAAGGGAAAAGGAAAAACG 59.937 40.000 0.00 0.00 37.23 3.60
3529 4230 5.870433 TCAAAGGGAAAAGGAAAAACGAAAC 59.130 36.000 0.00 0.00 0.00 2.78
3659 4454 6.366332 GTCTTATACGGATTGCAATCTACAGG 59.634 42.308 32.48 20.47 35.73 4.00
3660 4455 1.668419 ACGGATTGCAATCTACAGGC 58.332 50.000 32.48 17.42 35.73 4.85
3661 4456 1.210478 ACGGATTGCAATCTACAGGCT 59.790 47.619 32.48 9.82 35.73 4.58
3662 4457 1.600957 CGGATTGCAATCTACAGGCTG 59.399 52.381 32.48 14.16 35.73 4.85
3663 4458 2.742856 CGGATTGCAATCTACAGGCTGA 60.743 50.000 32.48 3.89 35.73 4.26
3664 4459 2.877168 GGATTGCAATCTACAGGCTGAG 59.123 50.000 32.48 14.02 35.73 3.35
3665 4460 1.742761 TTGCAATCTACAGGCTGAGC 58.257 50.000 23.66 14.33 0.00 4.26
3666 4461 4.849078 GATTGCAATCTACAGGCTGAGCC 61.849 52.174 28.38 17.50 39.55 4.70
3691 4486 1.379642 GGTGGCATGAGCTAACTGGC 61.380 60.000 0.00 8.69 41.70 4.85
3721 4517 3.508402 GGCCCCGAAGTTAAAAATCAGAA 59.492 43.478 0.00 0.00 0.00 3.02
3887 4685 2.701951 ACGAAACTTGGGAGTGTTCCTA 59.298 45.455 0.00 0.00 43.49 2.94
4040 4838 6.646653 TGTTTCACCTATCGCAATATGATCTC 59.353 38.462 0.00 0.00 0.00 2.75
4197 5372 7.277981 GTGAATTCCGACTAGTGTGACAATTAT 59.722 37.037 0.00 0.00 0.00 1.28
4239 5414 8.229811 CCTTGCTTGTTAAGAAAAATAAATGCC 58.770 33.333 0.00 0.00 0.00 4.40
4411 5647 4.474651 TCATGTGAAGTACCAATCCATCCT 59.525 41.667 0.00 0.00 0.00 3.24
4662 5898 7.182206 TCTGTAACCTTTTTCCCTAATAGCTCT 59.818 37.037 0.00 0.00 0.00 4.09
4668 5904 7.509318 ACCTTTTTCCCTAATAGCTCTGTTTTT 59.491 33.333 0.00 0.00 0.00 1.94
4744 5980 1.263356 TCCCTCTCGATCGTTTTGGT 58.737 50.000 15.94 0.00 0.00 3.67
4758 5994 2.430694 GTTTTGGTGAGCTTGGACCTTT 59.569 45.455 10.78 0.00 32.98 3.11
4931 6167 4.024387 GTGCGAGTTTGTGGTAAAAGATCA 60.024 41.667 0.00 0.00 0.00 2.92
4986 6222 2.869101 TAAATGTAGCCCTGCACACA 57.131 45.000 0.00 0.00 32.18 3.72
5022 6258 2.033049 CGATCGACTTCGTTCCCTGTAT 59.967 50.000 10.26 0.00 40.80 2.29
5169 6405 2.223340 GCTTGTGATTAGGGCATGAACG 60.223 50.000 0.00 0.00 0.00 3.95
5324 7317 5.964958 TTTGTGCTTTCTATCCTTGGAAG 57.035 39.130 0.00 0.00 0.00 3.46
5350 7343 7.531280 TCAAGATCATGTTCGAAGAGATTTC 57.469 36.000 0.00 0.00 38.43 2.17
5363 7356 4.543590 AGAGATTTCGGAGTGAACATGT 57.456 40.909 0.00 0.00 35.97 3.21
5367 7360 5.118990 AGATTTCGGAGTGAACATGTATGG 58.881 41.667 0.00 0.00 35.97 2.74
5474 7491 2.626149 GGACTGTACATCCACTACCCCT 60.626 54.545 15.41 0.00 36.15 4.79
5527 7544 7.575505 TCTGCTAAGATCTGGTAACTACTACT 58.424 38.462 0.00 0.00 37.61 2.57
5528 7545 7.716123 TCTGCTAAGATCTGGTAACTACTACTC 59.284 40.741 0.00 0.00 37.61 2.59
5529 7546 6.771749 TGCTAAGATCTGGTAACTACTACTCC 59.228 42.308 0.00 0.00 37.61 3.85
5534 7551 3.118112 TCTGGTAACTACTACTCCCTCCG 60.118 52.174 0.00 0.00 37.61 4.63
5536 7553 3.010584 TGGTAACTACTACTCCCTCCGTT 59.989 47.826 0.00 0.00 37.61 4.44
5537 7554 3.629855 GGTAACTACTACTCCCTCCGTTC 59.370 52.174 0.00 0.00 0.00 3.95
5539 7556 1.307097 CTACTACTCCCTCCGTTCGG 58.693 60.000 4.74 4.74 0.00 4.30
5542 7559 1.341778 ACTACTCCCTCCGTTCGGAAT 60.342 52.381 14.79 2.09 33.41 3.01
5543 7560 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
5545 7562 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
5546 7563 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
5548 7565 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
5550 7567 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
5551 7568 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
5552 7569 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
5553 7570 1.266211 CGTTCGGAATTACTTGTCGCG 60.266 52.381 0.00 0.00 0.00 5.87
5554 7571 1.987770 GTTCGGAATTACTTGTCGCGA 59.012 47.619 3.71 3.71 0.00 5.87
5555 7572 2.350899 TCGGAATTACTTGTCGCGAA 57.649 45.000 12.06 0.00 0.00 4.70
5556 7573 2.674954 TCGGAATTACTTGTCGCGAAA 58.325 42.857 12.06 0.54 0.00 3.46
5557 7574 3.058450 TCGGAATTACTTGTCGCGAAAA 58.942 40.909 12.06 12.01 0.00 2.29
5559 7576 3.778718 CGGAATTACTTGTCGCGAAAATG 59.221 43.478 13.05 9.32 0.00 2.32
5560 7577 4.095610 GGAATTACTTGTCGCGAAAATGG 58.904 43.478 13.05 4.35 0.00 3.16
5561 7578 4.142773 GGAATTACTTGTCGCGAAAATGGA 60.143 41.667 13.05 0.56 0.00 3.41
5562 7579 5.448632 GGAATTACTTGTCGCGAAAATGGAT 60.449 40.000 13.05 3.91 0.00 3.41
5563 7580 2.900122 ACTTGTCGCGAAAATGGATG 57.100 45.000 13.05 2.76 0.00 3.51
5564 7581 2.151202 ACTTGTCGCGAAAATGGATGT 58.849 42.857 13.05 3.46 0.00 3.06
5566 7583 3.938963 ACTTGTCGCGAAAATGGATGTAT 59.061 39.130 13.05 0.00 0.00 2.29
5567 7584 4.034048 ACTTGTCGCGAAAATGGATGTATC 59.966 41.667 13.05 0.00 0.00 2.24
5568 7585 3.792401 TGTCGCGAAAATGGATGTATCT 58.208 40.909 12.06 0.00 0.00 1.98
5570 7587 4.982295 TGTCGCGAAAATGGATGTATCTAG 59.018 41.667 12.06 0.00 0.00 2.43
5571 7588 5.220381 GTCGCGAAAATGGATGTATCTAGA 58.780 41.667 12.06 0.00 0.00 2.43
5573 7590 5.863935 TCGCGAAAATGGATGTATCTAGATG 59.136 40.000 15.79 0.00 0.00 2.90
5574 7591 5.635280 CGCGAAAATGGATGTATCTAGATGT 59.365 40.000 15.79 1.25 0.00 3.06
5575 7592 6.806739 CGCGAAAATGGATGTATCTAGATGTA 59.193 38.462 15.79 4.44 0.00 2.29
5576 7593 7.489435 CGCGAAAATGGATGTATCTAGATGTAT 59.511 37.037 15.79 9.11 0.00 2.29
5577 7594 9.155975 GCGAAAATGGATGTATCTAGATGTATT 57.844 33.333 15.79 4.32 0.00 1.89
5605 7622 8.324191 AGTTCTAGATACATCCATTTCCAAGA 57.676 34.615 0.00 0.00 0.00 3.02
5606 7623 8.207545 AGTTCTAGATACATCCATTTCCAAGAC 58.792 37.037 0.00 0.00 0.00 3.01
5607 7624 7.675161 TCTAGATACATCCATTTCCAAGACA 57.325 36.000 0.00 0.00 0.00 3.41
5608 7625 8.089625 TCTAGATACATCCATTTCCAAGACAA 57.910 34.615 0.00 0.00 0.00 3.18
5609 7626 8.206867 TCTAGATACATCCATTTCCAAGACAAG 58.793 37.037 0.00 0.00 0.00 3.16
5610 7627 6.725364 AGATACATCCATTTCCAAGACAAGT 58.275 36.000 0.00 0.00 0.00 3.16
5611 7628 7.861629 AGATACATCCATTTCCAAGACAAGTA 58.138 34.615 0.00 0.00 0.00 2.24
5612 7629 8.328758 AGATACATCCATTTCCAAGACAAGTAA 58.671 33.333 0.00 0.00 0.00 2.24
5613 7630 9.125026 GATACATCCATTTCCAAGACAAGTAAT 57.875 33.333 0.00 0.00 0.00 1.89
5614 7631 7.781324 ACATCCATTTCCAAGACAAGTAATT 57.219 32.000 0.00 0.00 0.00 1.40
5615 7632 7.830739 ACATCCATTTCCAAGACAAGTAATTC 58.169 34.615 0.00 0.00 0.00 2.17
5616 7633 6.834168 TCCATTTCCAAGACAAGTAATTCC 57.166 37.500 0.00 0.00 0.00 3.01
5617 7634 5.414454 TCCATTTCCAAGACAAGTAATTCCG 59.586 40.000 0.00 0.00 0.00 4.30
5618 7635 5.414454 CCATTTCCAAGACAAGTAATTCCGA 59.586 40.000 0.00 0.00 0.00 4.55
5619 7636 6.072175 CCATTTCCAAGACAAGTAATTCCGAA 60.072 38.462 0.00 0.00 0.00 4.30
5620 7637 5.934935 TTCCAAGACAAGTAATTCCGAAC 57.065 39.130 0.00 0.00 0.00 3.95
5621 7638 3.991773 TCCAAGACAAGTAATTCCGAACG 59.008 43.478 0.00 0.00 0.00 3.95
5622 7639 3.124636 CCAAGACAAGTAATTCCGAACGG 59.875 47.826 6.94 6.94 0.00 4.44
5623 7640 3.947910 AGACAAGTAATTCCGAACGGA 57.052 42.857 12.04 12.04 43.52 4.69
5624 7641 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
5625 7642 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
5626 7643 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
5627 7644 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
5628 7645 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
5645 7662 6.373216 CGGAGGGAGTACATACATTTTTCAAA 59.627 38.462 0.00 0.00 0.00 2.69
5691 7708 0.607489 GTGGCAGCTGACCTCACAAT 60.607 55.000 19.23 0.00 0.00 2.71
5700 7717 3.681897 GCTGACCTCACAATACTGTTGAG 59.318 47.826 1.16 1.16 31.64 3.02
5706 7723 5.760253 ACCTCACAATACTGTTGAGAACTTG 59.240 40.000 8.43 0.00 34.91 3.16
5738 7755 5.669904 TCCTTACATATCCATCCTCACCAAA 59.330 40.000 0.00 0.00 0.00 3.28
5746 7763 2.816087 CCATCCTCACCAAAGTGTTCAG 59.184 50.000 0.00 0.00 44.83 3.02
5866 7883 4.406972 CCAGTAGACAATCTCCTCATCCAA 59.593 45.833 0.00 0.00 0.00 3.53
5871 7888 2.575279 ACAATCTCCTCATCCAAGCAGT 59.425 45.455 0.00 0.00 0.00 4.40
5905 7922 1.880271 CGATGATCTGCCTGCTTCAT 58.120 50.000 0.00 3.57 0.00 2.57
5907 7924 1.267261 GATGATCTGCCTGCTTCATGC 59.733 52.381 0.00 0.00 43.25 4.06
5949 7966 1.144276 TCAACGCCGTCTCCAAACA 59.856 52.632 0.00 0.00 0.00 2.83
5951 7968 2.241880 AACGCCGTCTCCAAACACG 61.242 57.895 0.00 0.00 35.72 4.49
6065 8091 4.430007 CATGCTCTGAAAATCAATGGTGG 58.570 43.478 0.00 0.00 0.00 4.61
6067 8093 3.256383 TGCTCTGAAAATCAATGGTGGTG 59.744 43.478 0.00 0.00 0.00 4.17
6068 8094 3.507233 GCTCTGAAAATCAATGGTGGTGA 59.493 43.478 0.00 0.00 0.00 4.02
6069 8095 4.616835 GCTCTGAAAATCAATGGTGGTGAC 60.617 45.833 0.00 0.00 0.00 3.67
6141 8170 8.959548 AGAATACAGAGCTAGACATATGATGAG 58.040 37.037 10.38 4.10 0.00 2.90
6146 8175 6.433716 CAGAGCTAGACATATGATGAGAAGGA 59.566 42.308 10.38 0.00 0.00 3.36
6151 8180 7.333921 GCTAGACATATGATGAGAAGGAAATGG 59.666 40.741 10.38 0.00 0.00 3.16
6162 8192 0.331616 AGGAAATGGTGGTACCTGGC 59.668 55.000 14.36 3.33 39.58 4.85
6330 8360 3.640407 ATGGGCACGCAGTCCTGT 61.640 61.111 0.58 0.00 44.59 4.00
6441 8471 3.132139 TCGAAGAGCGTCCCCTCG 61.132 66.667 0.00 0.00 41.80 4.63
6672 8702 1.444553 CTCGCTCCAGTTGTCGGTC 60.445 63.158 0.00 0.00 0.00 4.79
6845 8875 1.804151 TGGAAGTAGCAATGCAACGAC 59.196 47.619 8.35 0.00 0.00 4.34
6876 8906 4.746611 GCATTTCTGGTTCTGTTTTTCAGG 59.253 41.667 0.00 0.00 43.76 3.86
6917 8947 1.696336 AGGTGCACTGTCAGACTGAAT 59.304 47.619 17.98 0.00 0.00 2.57
6942 8972 0.251634 GCTGAGGGTTCCCTGAGAAG 59.748 60.000 24.58 13.13 39.34 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.181010 CTCCCAGACCCATGGCCG 62.181 72.222 6.09 0.00 39.17 6.13
4 5 3.813724 CCTCCCAGACCCATGGCC 61.814 72.222 6.09 0.00 39.17 5.36
55 56 3.733988 GCATCGTTGTCATCGGACTAGAA 60.734 47.826 0.00 0.00 44.61 2.10
59 60 0.532573 AGCATCGTTGTCATCGGACT 59.467 50.000 3.59 0.00 44.61 3.85
83 84 3.355378 CCTTCATCAAGGTAATGGTGCA 58.645 45.455 0.00 0.00 44.11 4.57
132 133 3.365265 CACCGGAGCAACAAGGGC 61.365 66.667 9.46 0.00 0.00 5.19
133 134 2.672996 CCACCGGAGCAACAAGGG 60.673 66.667 9.46 0.00 0.00 3.95
134 135 0.821711 TTTCCACCGGAGCAACAAGG 60.822 55.000 9.46 0.00 31.21 3.61
135 136 1.200020 GATTTCCACCGGAGCAACAAG 59.800 52.381 9.46 0.00 31.21 3.16
137 138 0.109532 TGATTTCCACCGGAGCAACA 59.890 50.000 9.46 0.00 31.21 3.33
138 139 0.521735 GTGATTTCCACCGGAGCAAC 59.478 55.000 9.46 0.00 39.86 4.17
140 141 0.327924 ATGTGATTTCCACCGGAGCA 59.672 50.000 9.46 0.00 45.09 4.26
141 142 0.734889 CATGTGATTTCCACCGGAGC 59.265 55.000 9.46 0.00 45.09 4.70
143 144 1.339631 GGACATGTGATTTCCACCGGA 60.340 52.381 9.46 0.00 45.09 5.14
144 145 1.094785 GGACATGTGATTTCCACCGG 58.905 55.000 1.15 0.00 45.09 5.28
145 146 0.726827 CGGACATGTGATTTCCACCG 59.273 55.000 1.15 3.12 45.09 4.94
146 147 1.094785 CCGGACATGTGATTTCCACC 58.905 55.000 1.15 0.00 45.09 4.61
147 148 1.094785 CCCGGACATGTGATTTCCAC 58.905 55.000 1.15 0.00 45.88 4.02
148 149 0.695924 ACCCGGACATGTGATTTCCA 59.304 50.000 1.15 0.00 0.00 3.53
149 150 1.472480 CAACCCGGACATGTGATTTCC 59.528 52.381 1.15 0.00 0.00 3.13
150 151 2.159382 ACAACCCGGACATGTGATTTC 58.841 47.619 1.15 0.00 0.00 2.17
151 152 2.159382 GACAACCCGGACATGTGATTT 58.841 47.619 1.15 0.00 0.00 2.17
152 153 1.351017 AGACAACCCGGACATGTGATT 59.649 47.619 1.15 0.00 0.00 2.57
153 154 0.984230 AGACAACCCGGACATGTGAT 59.016 50.000 1.15 0.00 0.00 3.06
154 155 0.320374 GAGACAACCCGGACATGTGA 59.680 55.000 1.15 0.00 0.00 3.58
156 157 1.292223 CGAGACAACCCGGACATGT 59.708 57.895 0.73 0.00 0.00 3.21
164 165 2.499685 CCCGATCCGAGACAACCC 59.500 66.667 0.00 0.00 0.00 4.11
165 166 2.202892 GCCCGATCCGAGACAACC 60.203 66.667 0.00 0.00 0.00 3.77
166 167 0.462047 ATTGCCCGATCCGAGACAAC 60.462 55.000 0.00 0.00 0.00 3.32
167 168 0.461870 CATTGCCCGATCCGAGACAA 60.462 55.000 0.00 0.00 0.00 3.18
168 169 1.143838 CATTGCCCGATCCGAGACA 59.856 57.895 0.00 0.00 0.00 3.41
170 171 2.821685 CCATTGCCCGATCCGAGA 59.178 61.111 0.00 0.00 0.00 4.04
171 172 2.974698 GCCATTGCCCGATCCGAG 60.975 66.667 0.00 0.00 0.00 4.63
179 180 4.133796 GAAGTGCCGCCATTGCCC 62.134 66.667 0.00 0.00 0.00 5.36
181 182 2.180017 CAGAAGTGCCGCCATTGC 59.820 61.111 0.00 0.00 0.00 3.56
182 183 1.236616 TGACAGAAGTGCCGCCATTG 61.237 55.000 0.00 0.00 0.00 2.82
183 184 1.073025 TGACAGAAGTGCCGCCATT 59.927 52.632 0.00 0.00 0.00 3.16
184 185 1.672356 GTGACAGAAGTGCCGCCAT 60.672 57.895 0.00 0.00 0.00 4.40
185 186 2.280797 GTGACAGAAGTGCCGCCA 60.281 61.111 0.00 0.00 0.00 5.69
186 187 3.414700 CGTGACAGAAGTGCCGCC 61.415 66.667 0.00 0.00 0.00 6.13
187 188 3.414700 CCGTGACAGAAGTGCCGC 61.415 66.667 0.00 0.00 0.00 6.53
189 190 0.586802 GAAACCGTGACAGAAGTGCC 59.413 55.000 0.00 0.00 0.00 5.01
190 191 0.586802 GGAAACCGTGACAGAAGTGC 59.413 55.000 0.00 0.00 0.00 4.40
191 192 2.135933 GAGGAAACCGTGACAGAAGTG 58.864 52.381 0.00 0.00 0.00 3.16
192 193 2.040178 AGAGGAAACCGTGACAGAAGT 58.960 47.619 0.00 0.00 0.00 3.01
194 195 2.432874 TCAAGAGGAAACCGTGACAGAA 59.567 45.455 0.00 0.00 0.00 3.02
195 196 2.035961 CTCAAGAGGAAACCGTGACAGA 59.964 50.000 0.00 0.00 0.00 3.41
196 197 2.035961 TCTCAAGAGGAAACCGTGACAG 59.964 50.000 0.00 0.00 0.00 3.51
197 198 2.036387 TCTCAAGAGGAAACCGTGACA 58.964 47.619 0.00 0.00 0.00 3.58
198 199 2.223971 TGTCTCAAGAGGAAACCGTGAC 60.224 50.000 0.00 0.00 0.00 3.67
199 200 2.036387 TGTCTCAAGAGGAAACCGTGA 58.964 47.619 0.00 0.00 0.00 4.35
200 201 2.526304 TGTCTCAAGAGGAAACCGTG 57.474 50.000 0.00 0.00 0.00 4.94
201 202 2.028020 GGATGTCTCAAGAGGAAACCGT 60.028 50.000 0.00 0.00 0.00 4.83
203 204 2.573915 AGGGATGTCTCAAGAGGAAACC 59.426 50.000 0.00 0.00 0.00 3.27
204 205 3.990959 AGGGATGTCTCAAGAGGAAAC 57.009 47.619 0.00 0.00 0.00 2.78
205 206 4.350816 TCAAAGGGATGTCTCAAGAGGAAA 59.649 41.667 0.00 0.00 0.00 3.13
206 207 3.909995 TCAAAGGGATGTCTCAAGAGGAA 59.090 43.478 0.00 0.00 0.00 3.36
207 208 3.520696 TCAAAGGGATGTCTCAAGAGGA 58.479 45.455 0.00 0.00 0.00 3.71
208 209 3.988976 TCAAAGGGATGTCTCAAGAGG 57.011 47.619 0.00 0.00 0.00 3.69
209 210 3.688673 GCTTCAAAGGGATGTCTCAAGAG 59.311 47.826 0.00 0.00 0.00 2.85
210 211 3.328931 AGCTTCAAAGGGATGTCTCAAGA 59.671 43.478 0.00 0.00 0.00 3.02
211 212 3.683802 AGCTTCAAAGGGATGTCTCAAG 58.316 45.455 0.00 0.00 0.00 3.02
212 213 3.795688 AGCTTCAAAGGGATGTCTCAA 57.204 42.857 0.00 0.00 0.00 3.02
214 215 4.438148 GACTAGCTTCAAAGGGATGTCTC 58.562 47.826 0.00 0.00 0.00 3.36
216 217 3.536570 GGACTAGCTTCAAAGGGATGTC 58.463 50.000 0.00 0.00 0.00 3.06
218 219 2.743183 CGGGACTAGCTTCAAAGGGATG 60.743 54.545 0.00 0.00 0.00 3.51
219 220 1.486726 CGGGACTAGCTTCAAAGGGAT 59.513 52.381 0.00 0.00 0.00 3.85
220 221 0.902531 CGGGACTAGCTTCAAAGGGA 59.097 55.000 0.00 0.00 0.00 4.20
221 222 0.902531 TCGGGACTAGCTTCAAAGGG 59.097 55.000 0.00 0.00 0.00 3.95
222 223 1.550976 AGTCGGGACTAGCTTCAAAGG 59.449 52.381 0.00 0.00 40.43 3.11
232 233 2.004408 GCCCCCTCTAGTCGGGACTA 62.004 65.000 17.90 8.19 44.90 2.59
233 234 3.017139 CCCCCTCTAGTCGGGACT 58.983 66.667 17.90 6.57 44.90 3.85
234 235 2.838693 GCCCCCTCTAGTCGGGAC 60.839 72.222 17.90 4.77 44.90 4.46
235 236 4.153330 GGCCCCCTCTAGTCGGGA 62.153 72.222 17.90 0.00 44.90 5.14
236 237 4.159108 AGGCCCCCTCTAGTCGGG 62.159 72.222 0.00 11.52 41.59 5.14
237 238 2.840102 CAGGCCCCCTCTAGTCGG 60.840 72.222 0.00 0.00 0.00 4.79
238 239 2.840102 CCAGGCCCCCTCTAGTCG 60.840 72.222 0.00 0.00 0.00 4.18
239 240 2.066999 CACCAGGCCCCCTCTAGTC 61.067 68.421 0.00 0.00 0.00 2.59
240 241 2.041265 CACCAGGCCCCCTCTAGT 59.959 66.667 0.00 0.00 0.00 2.57
241 242 2.770048 CCACCAGGCCCCCTCTAG 60.770 72.222 0.00 0.00 0.00 2.43
250 251 4.974721 CACCACCACCCACCAGGC 62.975 72.222 0.00 0.00 40.58 4.85
251 252 4.284550 CCACCACCACCCACCAGG 62.285 72.222 0.00 0.00 43.78 4.45
256 257 3.552384 GACGACCACCACCACCCA 61.552 66.667 0.00 0.00 0.00 4.51
257 258 3.530910 CTGACGACCACCACCACCC 62.531 68.421 0.00 0.00 0.00 4.61
258 259 2.030562 CTGACGACCACCACCACC 59.969 66.667 0.00 0.00 0.00 4.61
259 260 2.665185 GCTGACGACCACCACCAC 60.665 66.667 0.00 0.00 0.00 4.16
260 261 2.050836 ATTGCTGACGACCACCACCA 62.051 55.000 0.00 0.00 0.00 4.17
262 263 0.238289 CAATTGCTGACGACCACCAC 59.762 55.000 0.00 0.00 0.00 4.16
265 266 0.238289 CACCAATTGCTGACGACCAC 59.762 55.000 0.00 0.00 0.00 4.16
266 267 0.179032 ACACCAATTGCTGACGACCA 60.179 50.000 7.75 0.00 0.00 4.02
268 269 0.238289 CCACACCAATTGCTGACGAC 59.762 55.000 7.75 0.00 0.00 4.34
269 270 1.514678 GCCACACCAATTGCTGACGA 61.515 55.000 7.75 0.00 0.00 4.20
270 271 1.081242 GCCACACCAATTGCTGACG 60.081 57.895 7.75 0.00 0.00 4.35
273 274 1.434555 CATTGCCACACCAATTGCTG 58.565 50.000 0.00 0.00 33.35 4.41
274 275 0.322322 CCATTGCCACACCAATTGCT 59.678 50.000 0.00 0.00 33.35 3.91
275 276 1.300266 GCCATTGCCACACCAATTGC 61.300 55.000 0.00 0.00 36.91 3.56
276 277 1.015085 CGCCATTGCCACACCAATTG 61.015 55.000 0.00 0.00 33.35 2.32
278 279 0.971959 ATCGCCATTGCCACACCAAT 60.972 50.000 0.00 0.00 35.90 3.16
279 280 1.606025 ATCGCCATTGCCACACCAA 60.606 52.632 0.00 0.00 0.00 3.67
280 281 2.035469 ATCGCCATTGCCACACCA 59.965 55.556 0.00 0.00 0.00 4.17
281 282 2.342650 ACATCGCCATTGCCACACC 61.343 57.895 0.00 0.00 0.00 4.16
282 283 1.153978 CACATCGCCATTGCCACAC 60.154 57.895 0.00 0.00 0.00 3.82
283 284 0.892814 TTCACATCGCCATTGCCACA 60.893 50.000 0.00 0.00 0.00 4.17
284 285 0.457035 ATTCACATCGCCATTGCCAC 59.543 50.000 0.00 0.00 0.00 5.01
285 286 0.456628 CATTCACATCGCCATTGCCA 59.543 50.000 0.00 0.00 0.00 4.92
287 288 1.204228 CGCATTCACATCGCCATTGC 61.204 55.000 0.00 0.00 0.00 3.56
288 289 0.099259 ACGCATTCACATCGCCATTG 59.901 50.000 0.00 0.00 0.00 2.82
289 290 0.099259 CACGCATTCACATCGCCATT 59.901 50.000 0.00 0.00 0.00 3.16
290 291 0.744057 TCACGCATTCACATCGCCAT 60.744 50.000 0.00 0.00 0.00 4.40
293 294 1.296145 CGTCACGCATTCACATCGC 60.296 57.895 0.00 0.00 0.00 4.58
294 295 1.344837 CCGTCACGCATTCACATCG 59.655 57.895 0.00 0.00 0.00 3.84
296 297 2.398554 GGCCGTCACGCATTCACAT 61.399 57.895 0.00 0.00 0.00 3.21
297 298 3.047280 GGCCGTCACGCATTCACA 61.047 61.111 0.00 0.00 0.00 3.58
298 299 2.742372 AGGCCGTCACGCATTCAC 60.742 61.111 0.00 0.00 0.00 3.18
299 300 2.741985 CAGGCCGTCACGCATTCA 60.742 61.111 0.00 0.00 0.00 2.57
300 301 3.499737 CCAGGCCGTCACGCATTC 61.500 66.667 0.00 0.00 0.00 2.67
302 303 4.329545 AACCAGGCCGTCACGCAT 62.330 61.111 0.00 0.00 0.00 4.73
304 305 3.869473 TACAACCAGGCCGTCACGC 62.869 63.158 0.00 0.00 0.00 5.34
306 307 0.604578 TACTACAACCAGGCCGTCAC 59.395 55.000 0.00 0.00 0.00 3.67
308 309 0.893447 ACTACTACAACCAGGCCGTC 59.107 55.000 0.00 0.00 0.00 4.79
309 310 0.893447 GACTACTACAACCAGGCCGT 59.107 55.000 0.00 0.00 0.00 5.68
310 311 0.179145 CGACTACTACAACCAGGCCG 60.179 60.000 0.00 0.00 0.00 6.13
311 312 1.135170 GTCGACTACTACAACCAGGCC 60.135 57.143 8.70 0.00 0.00 5.19
313 314 2.422832 GGAGTCGACTACTACAACCAGG 59.577 54.545 21.00 0.00 39.11 4.45
314 315 3.345414 AGGAGTCGACTACTACAACCAG 58.655 50.000 29.14 0.00 42.17 4.00
315 316 3.341823 GAGGAGTCGACTACTACAACCA 58.658 50.000 30.16 0.00 42.17 3.67
329 330 0.386985 GGTGAACACGTCGAGGAGTC 60.387 60.000 12.85 6.34 0.00 3.36
330 331 0.822532 AGGTGAACACGTCGAGGAGT 60.823 55.000 12.85 7.30 0.00 3.85
331 332 0.387367 CAGGTGAACACGTCGAGGAG 60.387 60.000 12.85 6.56 0.00 3.69
334 335 1.129326 GAACAGGTGAACACGTCGAG 58.871 55.000 0.00 0.00 0.00 4.04
335 336 0.456628 TGAACAGGTGAACACGTCGA 59.543 50.000 0.00 0.00 0.00 4.20
336 337 1.455786 GATGAACAGGTGAACACGTCG 59.544 52.381 0.00 0.00 0.00 5.12
337 338 1.455786 CGATGAACAGGTGAACACGTC 59.544 52.381 0.00 0.00 0.00 4.34
338 339 1.202486 ACGATGAACAGGTGAACACGT 60.202 47.619 0.00 0.00 0.00 4.49
339 340 1.192312 CACGATGAACAGGTGAACACG 59.808 52.381 0.00 0.00 33.58 4.49
340 341 1.531149 CCACGATGAACAGGTGAACAC 59.469 52.381 9.32 0.00 33.58 3.32
341 342 1.542328 CCCACGATGAACAGGTGAACA 60.542 52.381 9.32 0.00 33.58 3.18
342 343 1.156736 CCCACGATGAACAGGTGAAC 58.843 55.000 9.32 0.00 33.58 3.18
344 345 1.275666 ATCCCACGATGAACAGGTGA 58.724 50.000 9.32 0.00 33.58 4.02
353 354 4.119862 ATCGTAGAAAACATCCCACGATG 58.880 43.478 6.62 0.00 46.55 3.84
354 355 3.880047 TCGTAGAAAACATCCCACGAT 57.120 42.857 0.00 0.00 39.62 3.73
357 358 4.935808 ACTTCATCGTAGAAAACATCCCAC 59.064 41.667 0.00 0.00 43.58 4.61
358 359 5.160607 ACTTCATCGTAGAAAACATCCCA 57.839 39.130 0.00 0.00 43.58 4.37
360 361 5.376947 CGACTTCATCGTAGAAAACATCC 57.623 43.478 0.00 0.00 46.25 3.51
373 374 0.095417 GCCGCAACTTCGACTTCATC 59.905 55.000 0.00 0.00 0.00 2.92
374 375 1.626654 CGCCGCAACTTCGACTTCAT 61.627 55.000 0.00 0.00 0.00 2.57
378 379 2.430921 CTCGCCGCAACTTCGACT 60.431 61.111 0.00 0.00 0.00 4.18
379 380 3.479269 CCTCGCCGCAACTTCGAC 61.479 66.667 0.00 0.00 0.00 4.20
381 382 2.509336 ATCCTCGCCGCAACTTCG 60.509 61.111 0.00 0.00 0.00 3.79
382 383 2.517450 CGATCCTCGCCGCAACTTC 61.517 63.158 0.00 0.00 31.14 3.01
383 384 2.509336 CGATCCTCGCCGCAACTT 60.509 61.111 0.00 0.00 31.14 2.66
384 385 3.760035 ACGATCCTCGCCGCAACT 61.760 61.111 0.00 0.00 45.12 3.16
385 386 3.554692 CACGATCCTCGCCGCAAC 61.555 66.667 0.00 0.00 45.12 4.17
390 391 3.982372 TTGTCGCACGATCCTCGCC 62.982 63.158 0.00 0.00 45.12 5.54
454 670 0.034089 AGAACTATGCAGGGTTGGCC 60.034 55.000 11.06 0.00 0.00 5.36
499 715 0.108138 ACGCCATAACAGGACAGCTC 60.108 55.000 0.00 0.00 0.00 4.09
504 720 1.202651 AGCCATACGCCATAACAGGAC 60.203 52.381 0.00 0.00 38.78 3.85
505 721 1.128200 AGCCATACGCCATAACAGGA 58.872 50.000 0.00 0.00 38.78 3.86
528 744 1.946768 TGAAGACCAAAGCCGTGAAAG 59.053 47.619 0.00 0.00 0.00 2.62
534 750 0.523072 CCACATGAAGACCAAAGCCG 59.477 55.000 0.00 0.00 0.00 5.52
610 827 0.958876 TAGCTCCTCGACAAGCGACA 60.959 55.000 8.26 0.00 45.59 4.35
655 872 0.178921 AGGAGAGAGCCCTGTTGACA 60.179 55.000 0.00 0.00 31.66 3.58
664 881 2.548295 CCGCTACGAGGAGAGAGCC 61.548 68.421 0.00 0.00 0.00 4.70
666 883 0.745128 ACACCGCTACGAGGAGAGAG 60.745 60.000 0.00 0.00 0.00 3.20
667 884 1.025113 CACACCGCTACGAGGAGAGA 61.025 60.000 0.00 0.00 0.00 3.10
677 894 0.251474 ACACTACCCTCACACCGCTA 60.251 55.000 0.00 0.00 0.00 4.26
689 906 3.687698 ACACACACAAACAAGACACTACC 59.312 43.478 0.00 0.00 0.00 3.18
697 914 3.365832 GCTGATCACACACACAAACAAG 58.634 45.455 0.00 0.00 0.00 3.16
766 1420 9.003658 AGAGTTGTGATTTTCGTTGATTAAGAT 57.996 29.630 0.00 0.00 0.00 2.40
783 1437 7.817418 AGTTAATAAGGCAAAAGAGTTGTGA 57.183 32.000 0.00 0.00 0.00 3.58
784 1438 7.096065 GCAAGTTAATAAGGCAAAAGAGTTGTG 60.096 37.037 0.00 0.00 0.00 3.33
806 1460 5.526115 ACAGTGTTCATGAGATTTTGCAAG 58.474 37.500 0.00 0.00 0.00 4.01
807 1461 5.067544 TGACAGTGTTCATGAGATTTTGCAA 59.932 36.000 0.00 0.00 0.00 4.08
808 1462 4.579753 TGACAGTGTTCATGAGATTTTGCA 59.420 37.500 0.00 0.00 0.00 4.08
809 1463 5.112220 TGACAGTGTTCATGAGATTTTGC 57.888 39.130 0.00 0.00 0.00 3.68
810 1464 5.152097 GCTGACAGTGTTCATGAGATTTTG 58.848 41.667 3.99 0.00 0.00 2.44
816 1470 2.344950 GAGGCTGACAGTGTTCATGAG 58.655 52.381 3.99 0.00 0.00 2.90
817 1471 1.002430 GGAGGCTGACAGTGTTCATGA 59.998 52.381 3.99 0.00 0.00 3.07
841 1508 5.147865 CCGTGTTTGTTGCGTTATTGAATA 58.852 37.500 0.00 0.00 0.00 1.75
910 1582 2.937519 TGTGAACAATGTTGTGCCCTA 58.062 42.857 2.20 0.00 41.31 3.53
919 1591 4.278919 TCATGCTGTGATTGTGAACAATGT 59.721 37.500 13.21 0.00 45.72 2.71
965 1637 1.063469 GTTTATGTGCGGATTCGGTGG 59.937 52.381 0.00 0.00 36.79 4.61
966 1638 1.735018 TGTTTATGTGCGGATTCGGTG 59.265 47.619 0.00 0.00 36.79 4.94
967 1639 2.102070 TGTTTATGTGCGGATTCGGT 57.898 45.000 0.00 0.00 36.79 4.69
968 1640 3.617669 GAATGTTTATGTGCGGATTCGG 58.382 45.455 0.00 0.00 36.79 4.30
969 1641 3.279950 CGAATGTTTATGTGCGGATTCG 58.720 45.455 0.00 0.00 37.09 3.34
970 1642 3.617669 CCGAATGTTTATGTGCGGATTC 58.382 45.455 0.00 0.00 41.11 2.52
971 1643 2.223479 GCCGAATGTTTATGTGCGGATT 60.223 45.455 0.00 0.00 41.11 3.01
972 1644 1.333619 GCCGAATGTTTATGTGCGGAT 59.666 47.619 0.00 0.00 41.11 4.18
973 1645 0.730265 GCCGAATGTTTATGTGCGGA 59.270 50.000 0.00 0.00 41.11 5.54
974 1646 0.732571 AGCCGAATGTTTATGTGCGG 59.267 50.000 0.00 0.00 41.51 5.69
975 1647 1.665679 AGAGCCGAATGTTTATGTGCG 59.334 47.619 0.00 0.00 0.00 5.34
976 1648 3.002348 GGTAGAGCCGAATGTTTATGTGC 59.998 47.826 0.00 0.00 0.00 4.57
977 1649 4.034048 GTGGTAGAGCCGAATGTTTATGTG 59.966 45.833 0.00 0.00 41.21 3.21
978 1650 4.189231 GTGGTAGAGCCGAATGTTTATGT 58.811 43.478 0.00 0.00 41.21 2.29
979 1651 3.560068 GGTGGTAGAGCCGAATGTTTATG 59.440 47.826 0.00 0.00 41.21 1.90
980 1652 3.805207 GGTGGTAGAGCCGAATGTTTAT 58.195 45.455 0.00 0.00 41.21 1.40
981 1653 3.255969 GGTGGTAGAGCCGAATGTTTA 57.744 47.619 0.00 0.00 41.21 2.01
982 1654 2.109425 GGTGGTAGAGCCGAATGTTT 57.891 50.000 0.00 0.00 41.21 2.83
983 1655 3.855159 GGTGGTAGAGCCGAATGTT 57.145 52.632 0.00 0.00 41.21 2.71
1043 1718 1.705745 AGTTCCCCTTCTTTCTGTCCC 59.294 52.381 0.00 0.00 0.00 4.46
1044 1719 2.613223 CGAGTTCCCCTTCTTTCTGTCC 60.613 54.545 0.00 0.00 0.00 4.02
1157 1834 3.711782 AGGGGAGGGGAGGGGAAG 61.712 72.222 0.00 0.00 0.00 3.46
1158 1835 3.707189 GAGGGGAGGGGAGGGGAA 61.707 72.222 0.00 0.00 0.00 3.97
1162 1839 4.825679 GTGGGAGGGGAGGGGAGG 62.826 77.778 0.00 0.00 0.00 4.30
1163 1840 4.024984 TGTGGGAGGGGAGGGGAG 62.025 72.222 0.00 0.00 0.00 4.30
1164 1841 4.348495 GTGTGGGAGGGGAGGGGA 62.348 72.222 0.00 0.00 0.00 4.81
1245 1926 3.663815 GAGGGCAGGGAGACGAGGA 62.664 68.421 0.00 0.00 0.00 3.71
1246 1927 3.151022 GAGGGCAGGGAGACGAGG 61.151 72.222 0.00 0.00 0.00 4.63
1247 1928 3.151022 GGAGGGCAGGGAGACGAG 61.151 72.222 0.00 0.00 0.00 4.18
1248 1929 4.779733 GGGAGGGCAGGGAGACGA 62.780 72.222 0.00 0.00 0.00 4.20
1249 1930 4.787280 AGGGAGGGCAGGGAGACG 62.787 72.222 0.00 0.00 0.00 4.18
1250 1931 2.766229 GAGGGAGGGCAGGGAGAC 60.766 72.222 0.00 0.00 0.00 3.36
1251 1932 4.465446 CGAGGGAGGGCAGGGAGA 62.465 72.222 0.00 0.00 0.00 3.71
1252 1933 3.984186 TTCGAGGGAGGGCAGGGAG 62.984 68.421 0.00 0.00 0.00 4.30
1320 2009 3.351885 AGAGGGAGGGCCTCGAGT 61.352 66.667 26.54 13.73 39.11 4.18
1334 2024 2.604139 GAACCTATGGGGAGAGGAGAG 58.396 57.143 0.00 0.00 38.76 3.20
1335 2025 1.133450 CGAACCTATGGGGAGAGGAGA 60.133 57.143 0.00 0.00 38.76 3.71
1336 2026 1.133450 TCGAACCTATGGGGAGAGGAG 60.133 57.143 0.00 0.00 38.76 3.69
1337 2027 0.931468 TCGAACCTATGGGGAGAGGA 59.069 55.000 0.00 0.00 38.76 3.71
1338 2028 2.016905 ATCGAACCTATGGGGAGAGG 57.983 55.000 0.00 0.00 38.76 3.69
1347 2037 4.522722 GGATCGGAGAAATCGAACCTAT 57.477 45.455 5.71 0.00 43.31 2.57
1356 2046 1.776662 TCGGTGAGGATCGGAGAAAT 58.223 50.000 0.00 0.00 43.58 2.17
1481 2171 4.802051 GCCCCTGCTGGCGATCAA 62.802 66.667 3.63 0.00 42.54 2.57
1668 2358 3.057946 GCCAAAATCGAGAAGCAAACTCT 60.058 43.478 0.00 0.00 32.87 3.24
1669 2359 3.237628 GCCAAAATCGAGAAGCAAACTC 58.762 45.455 0.00 0.00 0.00 3.01
1670 2360 2.029918 GGCCAAAATCGAGAAGCAAACT 60.030 45.455 0.00 0.00 0.00 2.66
1684 2374 0.417035 ATCCCAATCCCAGGCCAAAA 59.583 50.000 5.01 0.00 0.00 2.44
1698 2388 1.992557 ACCACCTTTCAAGCTATCCCA 59.007 47.619 0.00 0.00 0.00 4.37
1699 2389 2.808906 ACCACCTTTCAAGCTATCCC 57.191 50.000 0.00 0.00 0.00 3.85
1700 2390 3.367395 GCAAACCACCTTTCAAGCTATCC 60.367 47.826 0.00 0.00 0.00 2.59
1701 2391 3.507622 AGCAAACCACCTTTCAAGCTATC 59.492 43.478 0.00 0.00 0.00 2.08
1702 2392 3.500343 AGCAAACCACCTTTCAAGCTAT 58.500 40.909 0.00 0.00 0.00 2.97
1703 2393 2.944129 AGCAAACCACCTTTCAAGCTA 58.056 42.857 0.00 0.00 0.00 3.32
1704 2394 1.780503 AGCAAACCACCTTTCAAGCT 58.219 45.000 0.00 0.00 0.00 3.74
1717 2407 3.888934 TGAAATCGAGAAGCAAGCAAAC 58.111 40.909 0.00 0.00 0.00 2.93
1718 2408 3.058016 CCTGAAATCGAGAAGCAAGCAAA 60.058 43.478 0.00 0.00 0.00 3.68
1778 2468 1.739562 CCTCGCCTCTGCAGAACAC 60.740 63.158 18.85 8.93 37.32 3.32
1780 2470 1.153667 CTCCTCGCCTCTGCAGAAC 60.154 63.158 18.85 11.91 37.32 3.01
1826 2516 4.554363 CCGCTGTAGTCGCCTCCG 62.554 72.222 0.00 0.00 0.00 4.63
1871 2561 1.408683 GGCAAGGATATCTGCACCACA 60.409 52.381 16.27 0.00 0.00 4.17
1909 2599 8.928733 CATAACAGTGGAATGATTTTGAAAAGG 58.071 33.333 0.00 0.00 0.00 3.11
1916 2606 6.996509 ACAAGCATAACAGTGGAATGATTTT 58.003 32.000 10.27 2.09 27.35 1.82
2130 2826 4.133078 CAGGAAGAAGTATTGATGGAGCC 58.867 47.826 0.00 0.00 0.00 4.70
2166 2862 2.299013 TCAGATGACGCACTGGTAACTT 59.701 45.455 0.00 0.00 35.20 2.66
2179 2875 6.344500 ACACCATAAATCAGAGTCAGATGAC 58.656 40.000 4.77 4.77 45.08 3.06
2188 2884 9.307121 CTGTAGTAGAAACACCATAAATCAGAG 57.693 37.037 0.00 0.00 0.00 3.35
2273 2969 2.543797 AAGCCGGTTGGATTCCCCA 61.544 57.895 1.90 0.00 40.73 4.96
2488 3184 2.585330 TGGAATGAAGCAGCAACTGAA 58.415 42.857 0.00 0.00 32.44 3.02
2520 3216 3.064324 GCATGTGGGTGGTGGAGC 61.064 66.667 0.00 0.00 0.00 4.70
2638 3334 1.485124 TTGGCCGATTGCTCTCTCTA 58.515 50.000 0.00 0.00 40.92 2.43
2641 3337 1.065199 TCATTTGGCCGATTGCTCTCT 60.065 47.619 9.67 0.00 40.92 3.10
2642 3338 1.382522 TCATTTGGCCGATTGCTCTC 58.617 50.000 9.67 0.00 40.92 3.20
2644 3340 1.866880 GCATCATTTGGCCGATTGCTC 60.867 52.381 9.67 0.00 40.92 4.26
2645 3341 0.103572 GCATCATTTGGCCGATTGCT 59.896 50.000 9.67 0.00 40.92 3.91
2646 3342 0.179105 TGCATCATTTGGCCGATTGC 60.179 50.000 9.67 9.64 40.16 3.56
2647 3343 2.296831 TTGCATCATTTGGCCGATTG 57.703 45.000 8.38 8.38 0.00 2.67
2648 3344 2.828877 CATTGCATCATTTGGCCGATT 58.171 42.857 0.00 0.00 0.00 3.34
2649 3345 1.539496 GCATTGCATCATTTGGCCGAT 60.539 47.619 3.15 0.00 0.00 4.18
2650 3346 0.179105 GCATTGCATCATTTGGCCGA 60.179 50.000 3.15 0.00 0.00 5.54
2651 3347 1.155424 GGCATTGCATCATTTGGCCG 61.155 55.000 11.39 0.00 0.00 6.13
2652 3348 0.179468 AGGCATTGCATCATTTGGCC 59.821 50.000 11.39 0.00 40.18 5.36
2747 3443 5.403766 ACAATCATTCGCGCAATTTAACAAA 59.596 32.000 8.75 0.00 0.00 2.83
3229 3926 3.679824 ACTAAAGACGTCTTTCCCCAG 57.320 47.619 39.03 31.82 44.34 4.45
3341 4042 5.047377 TGCCAGATACCAATTTGTCTTTTCC 60.047 40.000 0.00 0.00 0.00 3.13
3428 4129 6.073819 GCTTTGTAGAAACCGCAATGAAAAAT 60.074 34.615 0.00 0.00 0.00 1.82
3430 4131 4.742659 GCTTTGTAGAAACCGCAATGAAAA 59.257 37.500 0.00 0.00 0.00 2.29
3440 4141 5.763698 ACTTACTCCAAGCTTTGTAGAAACC 59.236 40.000 0.00 0.00 37.83 3.27
3495 4196 2.065899 TTCCCTTTGAACACACAGGG 57.934 50.000 13.38 13.38 46.99 4.45
3496 4197 3.181476 CCTTTTCCCTTTGAACACACAGG 60.181 47.826 0.00 0.00 32.94 4.00
3529 4230 8.338072 AGGTAGTCGTCCATATACAATTCTAG 57.662 38.462 0.00 0.00 0.00 2.43
3665 4460 2.513204 CTCATGCCACCTCAGCGG 60.513 66.667 0.00 0.00 39.35 5.52
3666 4461 2.302199 TAGCTCATGCCACCTCAGCG 62.302 60.000 0.00 0.00 40.80 5.18
3691 4486 4.740822 CTTCGGGGCCCCCAGTTG 62.741 72.222 36.13 21.03 45.83 3.16
3887 4685 2.610727 GCAGTTCGCTGGAGTTAAGAGT 60.611 50.000 0.00 0.00 45.10 3.24
4197 5372 2.092103 GCAAGGGTATACCAACATCCCA 60.092 50.000 23.33 0.00 43.89 4.37
4376 5612 6.151144 GGTACTTCACATGACTGGCTTAAAAT 59.849 38.462 0.00 0.00 0.00 1.82
4411 5647 2.101415 CAGAAGTGTGACAGGTGTGAGA 59.899 50.000 0.00 0.00 0.00 3.27
4668 5904 3.792401 TCGCTTCTCTCACTGAAACAAA 58.208 40.909 0.00 0.00 0.00 2.83
4744 5980 2.494059 CTCGAAAAAGGTCCAAGCTCA 58.506 47.619 0.00 0.00 0.00 4.26
4758 5994 3.401033 TGCTGAAGAATGTCCTCGAAA 57.599 42.857 0.00 0.00 0.00 3.46
4864 6100 1.881973 CCAGAAGTGTGTTGTGGGATG 59.118 52.381 0.00 0.00 0.00 3.51
4931 6167 0.603975 GTTCTCCTGCGCAAAGAGGT 60.604 55.000 27.66 0.00 0.00 3.85
5177 6413 7.867403 ACAAATTTTACTAAATGGCACTGAGTG 59.133 33.333 8.52 8.52 34.27 3.51
5182 6418 8.956533 ACAAACAAATTTTACTAAATGGCACT 57.043 26.923 0.00 0.00 34.27 4.40
5324 7317 4.428209 TCTCTTCGAACATGATCTTGAGC 58.572 43.478 15.03 5.70 0.00 4.26
5350 7343 2.315925 AGCCATACATGTTCACTCCG 57.684 50.000 2.30 0.00 0.00 4.63
5363 7356 4.094294 CGGTCGAAAATTTCTGAAGCCATA 59.906 41.667 4.09 0.00 0.00 2.74
5367 7360 2.851534 CCGGTCGAAAATTTCTGAAGC 58.148 47.619 4.09 0.00 0.00 3.86
5527 7544 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
5528 7545 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
5529 7546 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
5534 7551 1.987770 TCGCGACAAGTAATTCCGAAC 59.012 47.619 3.71 0.00 0.00 3.95
5536 7553 2.350899 TTCGCGACAAGTAATTCCGA 57.649 45.000 9.15 0.00 0.00 4.55
5537 7554 3.443054 TTTTCGCGACAAGTAATTCCG 57.557 42.857 9.15 0.00 0.00 4.30
5539 7556 4.965062 TCCATTTTCGCGACAAGTAATTC 58.035 39.130 9.15 0.00 0.00 2.17
5542 7559 3.749088 ACATCCATTTTCGCGACAAGTAA 59.251 39.130 9.15 0.00 0.00 2.24
5543 7560 3.331150 ACATCCATTTTCGCGACAAGTA 58.669 40.909 9.15 0.00 0.00 2.24
5545 7562 2.900122 ACATCCATTTTCGCGACAAG 57.100 45.000 9.15 2.84 0.00 3.16
5546 7563 4.188462 AGATACATCCATTTTCGCGACAA 58.812 39.130 9.15 9.93 0.00 3.18
5548 7565 5.220381 TCTAGATACATCCATTTTCGCGAC 58.780 41.667 9.15 0.00 0.00 5.19
5550 7567 5.635280 ACATCTAGATACATCCATTTTCGCG 59.365 40.000 4.54 0.00 0.00 5.87
5551 7568 8.709386 ATACATCTAGATACATCCATTTTCGC 57.291 34.615 4.54 0.00 0.00 4.70
5579 7596 9.434275 TCTTGGAAATGGATGTATCTAGAACTA 57.566 33.333 0.00 0.00 0.00 2.24
5580 7597 8.207545 GTCTTGGAAATGGATGTATCTAGAACT 58.792 37.037 0.00 0.00 0.00 3.01
5581 7598 7.987458 TGTCTTGGAAATGGATGTATCTAGAAC 59.013 37.037 0.00 0.00 0.00 3.01
5582 7599 8.089625 TGTCTTGGAAATGGATGTATCTAGAA 57.910 34.615 0.00 0.00 0.00 2.10
5583 7600 7.675161 TGTCTTGGAAATGGATGTATCTAGA 57.325 36.000 0.00 0.00 0.00 2.43
5584 7601 7.989741 ACTTGTCTTGGAAATGGATGTATCTAG 59.010 37.037 0.00 0.00 0.00 2.43
5585 7602 7.861629 ACTTGTCTTGGAAATGGATGTATCTA 58.138 34.615 0.00 0.00 0.00 1.98
5586 7603 6.725364 ACTTGTCTTGGAAATGGATGTATCT 58.275 36.000 0.00 0.00 0.00 1.98
5587 7604 8.506168 TTACTTGTCTTGGAAATGGATGTATC 57.494 34.615 0.00 0.00 0.00 2.24
5588 7605 9.479549 AATTACTTGTCTTGGAAATGGATGTAT 57.520 29.630 0.00 0.00 0.00 2.29
5591 7608 7.260603 GGAATTACTTGTCTTGGAAATGGATG 58.739 38.462 0.00 0.00 0.00 3.51
5594 7611 5.414454 TCGGAATTACTTGTCTTGGAAATGG 59.586 40.000 0.00 0.00 0.00 3.16
5595 7612 6.494893 TCGGAATTACTTGTCTTGGAAATG 57.505 37.500 0.00 0.00 0.00 2.32
5596 7613 6.348213 CGTTCGGAATTACTTGTCTTGGAAAT 60.348 38.462 0.00 0.00 0.00 2.17
5597 7614 5.049954 CGTTCGGAATTACTTGTCTTGGAAA 60.050 40.000 0.00 0.00 0.00 3.13
5598 7615 4.449743 CGTTCGGAATTACTTGTCTTGGAA 59.550 41.667 0.00 0.00 0.00 3.53
5599 7616 3.991773 CGTTCGGAATTACTTGTCTTGGA 59.008 43.478 0.00 0.00 0.00 3.53
5600 7617 3.124636 CCGTTCGGAATTACTTGTCTTGG 59.875 47.826 5.19 0.00 0.00 3.61
5601 7618 3.991773 TCCGTTCGGAATTACTTGTCTTG 59.008 43.478 11.66 0.00 0.00 3.02
5602 7619 4.243270 CTCCGTTCGGAATTACTTGTCTT 58.757 43.478 14.79 0.00 33.41 3.01
5603 7620 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
5604 7621 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
5605 7622 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
5606 7623 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
5607 7624 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
5608 7625 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
5609 7626 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
5610 7627 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
5611 7628 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
5612 7629 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
5613 7630 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30
5614 7631 0.033796 ATGTACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55
5615 7632 1.336125 GTATGTACTCCCTCCGTTCGG 59.664 57.143 4.74 4.74 0.00 4.30
5616 7633 2.019249 TGTATGTACTCCCTCCGTTCG 58.981 52.381 0.00 0.00 0.00 3.95
5617 7634 4.667519 AATGTATGTACTCCCTCCGTTC 57.332 45.455 0.00 0.00 0.00 3.95
5618 7635 5.431179 AAAATGTATGTACTCCCTCCGTT 57.569 39.130 0.00 0.00 0.00 4.44
5619 7636 5.046159 TGAAAAATGTATGTACTCCCTCCGT 60.046 40.000 0.00 0.00 0.00 4.69
5620 7637 5.424757 TGAAAAATGTATGTACTCCCTCCG 58.575 41.667 0.00 0.00 0.00 4.63
5621 7638 7.393515 AGTTTGAAAAATGTATGTACTCCCTCC 59.606 37.037 0.00 0.00 0.00 4.30
5622 7639 8.336801 AGTTTGAAAAATGTATGTACTCCCTC 57.663 34.615 0.00 0.00 0.00 4.30
5623 7640 7.393515 GGAGTTTGAAAAATGTATGTACTCCCT 59.606 37.037 0.00 0.00 41.95 4.20
5624 7641 7.393515 AGGAGTTTGAAAAATGTATGTACTCCC 59.606 37.037 12.43 0.00 46.46 4.30
5625 7642 8.336801 AGGAGTTTGAAAAATGTATGTACTCC 57.663 34.615 0.00 0.00 45.93 3.85
5645 7662 6.054860 ACATAGCTGACATACAAAAGGAGT 57.945 37.500 0.00 0.00 0.00 3.85
5691 7708 3.583228 TCCCCTCAAGTTCTCAACAGTA 58.417 45.455 0.00 0.00 0.00 2.74
5729 7746 1.334869 GTGCTGAACACTTTGGTGAGG 59.665 52.381 3.06 0.00 46.41 3.86
5746 7763 0.463474 GCCTTCCATGAGAGAGGTGC 60.463 60.000 0.00 0.00 0.00 5.01
5889 7906 2.789842 GCATGAAGCAGGCAGATCA 58.210 52.632 0.00 0.00 41.05 2.92
5905 7922 0.461548 GACATGGATGAGGTCGAGCA 59.538 55.000 18.15 0.79 0.00 4.26
5907 7924 1.534805 CGTGACATGGATGAGGTCGAG 60.535 57.143 0.00 0.00 38.26 4.04
5949 7966 1.194781 AAGATGGCTGTGGACTCCGT 61.195 55.000 0.00 0.00 0.00 4.69
5951 7968 0.107459 GGAAGATGGCTGTGGACTCC 60.107 60.000 0.00 0.00 0.00 3.85
5953 7970 0.617413 CAGGAAGATGGCTGTGGACT 59.383 55.000 0.00 0.00 0.00 3.85
5954 7971 1.028868 GCAGGAAGATGGCTGTGGAC 61.029 60.000 0.00 0.00 0.00 4.02
6065 8091 6.968904 CAGGATTTATTTAGCACATGTGTCAC 59.031 38.462 26.01 10.54 0.00 3.67
6067 8093 7.320443 TCAGGATTTATTTAGCACATGTGTC 57.680 36.000 26.01 17.94 0.00 3.67
6068 8094 7.701539 TTCAGGATTTATTTAGCACATGTGT 57.298 32.000 26.01 15.36 0.00 3.72
6069 8095 9.590451 AAATTCAGGATTTATTTAGCACATGTG 57.410 29.630 21.83 21.83 36.20 3.21
6100 8127 7.468141 TCTGTATTCTGTAAGATCACAGTGT 57.532 36.000 11.72 0.00 46.36 3.55
6141 8170 2.723273 CCAGGTACCACCATTTCCTTC 58.277 52.381 15.94 0.00 41.95 3.46
6146 8175 1.677633 GCGCCAGGTACCACCATTT 60.678 57.895 15.94 0.00 41.95 2.32
6151 8180 2.287457 TACATCGCGCCAGGTACCAC 62.287 60.000 15.94 1.81 0.00 4.16
6162 8192 3.900892 ACCCTCGGCTACATCGCG 61.901 66.667 0.00 0.00 0.00 5.87
6330 8360 1.995626 GGGCCTCTCCTACCTGCAA 60.996 63.158 0.84 0.00 34.39 4.08
6441 8471 1.688772 TCCTCTACGAGTACATGCCC 58.311 55.000 0.00 0.00 0.00 5.36
6845 8875 1.062587 GAACCAGAAATGCACGGATCG 59.937 52.381 0.00 0.00 0.00 3.69
6876 8906 1.239347 GCTCCAACAAGAACCAGTCC 58.761 55.000 0.00 0.00 0.00 3.85
6917 8947 2.431683 GGAACCCTCAGCTGTGCA 59.568 61.111 14.67 0.00 0.00 4.57
6945 8975 2.666190 GCAGCACAGTCGCCTGAA 60.666 61.111 0.00 0.00 41.50 3.02
6951 8981 1.357258 CTAAGCTGGCAGCACAGTCG 61.357 60.000 38.09 17.46 45.56 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.