Multiple sequence alignment - TraesCS5B01G210200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G210200 | chr5B | 100.000 | 3723 | 0 | 0 | 1 | 3723 | 380320655 | 380324377 | 0.000000e+00 | 6876.0 |
1 | TraesCS5B01G210200 | chr5B | 92.970 | 1778 | 116 | 7 | 956 | 2728 | 380651400 | 380653173 | 0.000000e+00 | 2582.0 |
2 | TraesCS5B01G210200 | chr5B | 90.186 | 377 | 24 | 6 | 2840 | 3213 | 619081444 | 619081078 | 2.600000e-131 | 479.0 |
3 | TraesCS5B01G210200 | chr5B | 89.773 | 264 | 24 | 3 | 3334 | 3595 | 700920087 | 700919825 | 5.960000e-88 | 335.0 |
4 | TraesCS5B01G210200 | chr5B | 89.956 | 229 | 12 | 4 | 2986 | 3213 | 619117916 | 619117698 | 6.090000e-73 | 285.0 |
5 | TraesCS5B01G210200 | chr5B | 81.016 | 374 | 25 | 24 | 3210 | 3540 | 619080471 | 619080101 | 4.770000e-64 | 255.0 |
6 | TraesCS5B01G210200 | chr5B | 80.914 | 372 | 27 | 21 | 3210 | 3540 | 619117093 | 619116725 | 1.720000e-63 | 254.0 |
7 | TraesCS5B01G210200 | chr5B | 100.000 | 108 | 0 | 0 | 3594 | 3701 | 598082858 | 598082965 | 2.270000e-47 | 200.0 |
8 | TraesCS5B01G210200 | chr5B | 93.651 | 63 | 4 | 0 | 893 | 955 | 380670751 | 380670813 | 1.100000e-15 | 95.3 |
9 | TraesCS5B01G210200 | chr6B | 97.031 | 2290 | 58 | 5 | 929 | 3213 | 232741505 | 232739221 | 0.000000e+00 | 3843.0 |
10 | TraesCS5B01G210200 | chr6B | 91.211 | 1263 | 92 | 8 | 1476 | 2728 | 232870228 | 232868975 | 0.000000e+00 | 1700.0 |
11 | TraesCS5B01G210200 | chr6B | 90.042 | 713 | 20 | 11 | 1 | 664 | 531797945 | 531797235 | 0.000000e+00 | 876.0 |
12 | TraesCS5B01G210200 | chr6B | 88.249 | 417 | 18 | 14 | 3210 | 3595 | 232738612 | 232738196 | 1.570000e-128 | 470.0 |
13 | TraesCS5B01G210200 | chr6B | 75.936 | 561 | 81 | 30 | 1 | 523 | 95322212 | 95322756 | 4.810000e-59 | 239.0 |
14 | TraesCS5B01G210200 | chr6B | 95.968 | 124 | 4 | 1 | 3594 | 3717 | 447114662 | 447114540 | 2.270000e-47 | 200.0 |
15 | TraesCS5B01G210200 | chr6B | 73.256 | 516 | 79 | 40 | 153 | 620 | 682124160 | 682123656 | 2.330000e-27 | 134.0 |
16 | TraesCS5B01G210200 | chr6B | 79.856 | 139 | 16 | 9 | 1 | 127 | 456248805 | 456248943 | 1.420000e-14 | 91.6 |
17 | TraesCS5B01G210200 | chr7D | 95.362 | 1768 | 53 | 10 | 966 | 2728 | 241091575 | 241093318 | 0.000000e+00 | 2784.0 |
18 | TraesCS5B01G210200 | chr7D | 80.022 | 1787 | 300 | 33 | 954 | 2727 | 394387546 | 394385804 | 0.000000e+00 | 1269.0 |
19 | TraesCS5B01G210200 | chr7B | 94.994 | 1778 | 58 | 16 | 956 | 2728 | 216674957 | 216676708 | 0.000000e+00 | 2761.0 |
20 | TraesCS5B01G210200 | chr7B | 80.343 | 1109 | 173 | 24 | 1627 | 2727 | 223664713 | 223663642 | 0.000000e+00 | 798.0 |
21 | TraesCS5B01G210200 | chr7A | 94.629 | 1750 | 65 | 9 | 983 | 2727 | 257364088 | 257362363 | 0.000000e+00 | 2684.0 |
22 | TraesCS5B01G210200 | chr1A | 79.698 | 1059 | 168 | 26 | 1678 | 2727 | 143283616 | 143282596 | 0.000000e+00 | 721.0 |
23 | TraesCS5B01G210200 | chr1A | 84.331 | 568 | 37 | 17 | 1 | 541 | 502686978 | 502686436 | 3.320000e-140 | 508.0 |
24 | TraesCS5B01G210200 | chr1A | 97.345 | 113 | 3 | 0 | 3592 | 3704 | 535313741 | 535313853 | 3.790000e-45 | 193.0 |
25 | TraesCS5B01G210200 | chr1A | 84.112 | 107 | 3 | 5 | 572 | 664 | 502686435 | 502686329 | 1.420000e-14 | 91.6 |
26 | TraesCS5B01G210200 | chr2A | 84.756 | 656 | 55 | 20 | 1 | 626 | 176571677 | 176571037 | 1.900000e-172 | 616.0 |
27 | TraesCS5B01G210200 | chr2A | 88.973 | 263 | 18 | 4 | 3334 | 3595 | 582965865 | 582965613 | 7.760000e-82 | 315.0 |
28 | TraesCS5B01G210200 | chr4D | 92.819 | 376 | 24 | 2 | 2840 | 3213 | 485659344 | 485659718 | 3.270000e-150 | 542.0 |
29 | TraesCS5B01G210200 | chr4D | 90.909 | 264 | 22 | 2 | 3334 | 3595 | 485660398 | 485660661 | 1.640000e-93 | 353.0 |
30 | TraesCS5B01G210200 | chr4D | 88.550 | 131 | 7 | 4 | 3210 | 3334 | 485660241 | 485660369 | 6.440000e-33 | 152.0 |
31 | TraesCS5B01G210200 | chr2B | 84.158 | 606 | 47 | 22 | 1 | 569 | 175419047 | 175418454 | 3.270000e-150 | 542.0 |
32 | TraesCS5B01G210200 | chr2B | 93.396 | 106 | 5 | 1 | 553 | 658 | 175418437 | 175418334 | 4.980000e-34 | 156.0 |
33 | TraesCS5B01G210200 | chr6A | 84.872 | 509 | 44 | 18 | 185 | 665 | 605057399 | 605057902 | 2.010000e-132 | 483.0 |
34 | TraesCS5B01G210200 | chr6A | 98.198 | 111 | 2 | 0 | 3590 | 3700 | 52322109 | 52322219 | 1.060000e-45 | 195.0 |
35 | TraesCS5B01G210200 | chr4B | 85.942 | 377 | 28 | 7 | 2840 | 3213 | 521215547 | 521215901 | 2.710000e-101 | 379.0 |
36 | TraesCS5B01G210200 | chr4B | 84.069 | 408 | 47 | 14 | 721 | 1122 | 270658093 | 270657698 | 9.760000e-101 | 377.0 |
37 | TraesCS5B01G210200 | chr4B | 86.486 | 222 | 30 | 0 | 1393 | 1614 | 637287780 | 637288001 | 1.030000e-60 | 244.0 |
38 | TraesCS5B01G210200 | chr4B | 75.314 | 478 | 58 | 43 | 169 | 604 | 460793799 | 460794258 | 1.370000e-39 | 174.0 |
39 | TraesCS5B01G210200 | chr4B | 97.674 | 43 | 0 | 1 | 2672 | 2713 | 270658208 | 270658166 | 5.160000e-09 | 73.1 |
40 | TraesCS5B01G210200 | chr3D | 75.962 | 728 | 96 | 42 | 1 | 665 | 13928340 | 13929051 | 6.040000e-78 | 302.0 |
41 | TraesCS5B01G210200 | chr3D | 77.064 | 327 | 41 | 16 | 1 | 296 | 356929647 | 356929970 | 1.380000e-34 | 158.0 |
42 | TraesCS5B01G210200 | chr6D | 79.289 | 478 | 55 | 27 | 1 | 445 | 319752934 | 319752468 | 1.010000e-75 | 294.0 |
43 | TraesCS5B01G210200 | chr6D | 93.333 | 105 | 3 | 2 | 904 | 1008 | 126845656 | 126845756 | 6.440000e-33 | 152.0 |
44 | TraesCS5B01G210200 | chr3A | 99.174 | 121 | 0 | 1 | 3591 | 3710 | 32195744 | 32195624 | 2.250000e-52 | 217.0 |
45 | TraesCS5B01G210200 | chr4A | 98.230 | 113 | 1 | 1 | 3591 | 3702 | 468214151 | 468214039 | 2.930000e-46 | 196.0 |
46 | TraesCS5B01G210200 | chr4A | 99.074 | 108 | 1 | 0 | 3594 | 3701 | 176868199 | 176868306 | 1.060000e-45 | 195.0 |
47 | TraesCS5B01G210200 | chr4A | 78.924 | 223 | 32 | 11 | 389 | 604 | 596544764 | 596544550 | 1.800000e-28 | 137.0 |
48 | TraesCS5B01G210200 | chr3B | 99.074 | 108 | 1 | 0 | 3593 | 3700 | 86092799 | 86092692 | 1.060000e-45 | 195.0 |
49 | TraesCS5B01G210200 | chr3B | 96.491 | 114 | 4 | 0 | 3588 | 3701 | 582278237 | 582278350 | 4.910000e-44 | 189.0 |
50 | TraesCS5B01G210200 | chr5D | 75.336 | 446 | 66 | 27 | 167 | 604 | 346037912 | 346038321 | 1.370000e-39 | 174.0 |
51 | TraesCS5B01G210200 | chr2D | 79.263 | 217 | 21 | 18 | 396 | 604 | 357444236 | 357444036 | 3.020000e-26 | 130.0 |
52 | TraesCS5B01G210200 | chr2D | 78.571 | 196 | 29 | 13 | 412 | 602 | 398417184 | 398416997 | 2.350000e-22 | 117.0 |
53 | TraesCS5B01G210200 | chr1D | 77.027 | 222 | 33 | 12 | 1 | 210 | 317111631 | 317111416 | 1.090000e-20 | 111.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G210200 | chr5B | 380320655 | 380324377 | 3722 | False | 6876.00 | 6876 | 100.000000 | 1 | 3723 | 1 | chr5B.!!$F1 | 3722 |
1 | TraesCS5B01G210200 | chr5B | 380651400 | 380653173 | 1773 | False | 2582.00 | 2582 | 92.970000 | 956 | 2728 | 1 | chr5B.!!$F2 | 1772 |
2 | TraesCS5B01G210200 | chr5B | 619080101 | 619081444 | 1343 | True | 367.00 | 479 | 85.601000 | 2840 | 3540 | 2 | chr5B.!!$R2 | 700 |
3 | TraesCS5B01G210200 | chr5B | 619116725 | 619117916 | 1191 | True | 269.50 | 285 | 85.435000 | 2986 | 3540 | 2 | chr5B.!!$R3 | 554 |
4 | TraesCS5B01G210200 | chr6B | 232738196 | 232741505 | 3309 | True | 2156.50 | 3843 | 92.640000 | 929 | 3595 | 2 | chr6B.!!$R5 | 2666 |
5 | TraesCS5B01G210200 | chr6B | 232868975 | 232870228 | 1253 | True | 1700.00 | 1700 | 91.211000 | 1476 | 2728 | 1 | chr6B.!!$R1 | 1252 |
6 | TraesCS5B01G210200 | chr6B | 531797235 | 531797945 | 710 | True | 876.00 | 876 | 90.042000 | 1 | 664 | 1 | chr6B.!!$R3 | 663 |
7 | TraesCS5B01G210200 | chr6B | 95322212 | 95322756 | 544 | False | 239.00 | 239 | 75.936000 | 1 | 523 | 1 | chr6B.!!$F1 | 522 |
8 | TraesCS5B01G210200 | chr7D | 241091575 | 241093318 | 1743 | False | 2784.00 | 2784 | 95.362000 | 966 | 2728 | 1 | chr7D.!!$F1 | 1762 |
9 | TraesCS5B01G210200 | chr7D | 394385804 | 394387546 | 1742 | True | 1269.00 | 1269 | 80.022000 | 954 | 2727 | 1 | chr7D.!!$R1 | 1773 |
10 | TraesCS5B01G210200 | chr7B | 216674957 | 216676708 | 1751 | False | 2761.00 | 2761 | 94.994000 | 956 | 2728 | 1 | chr7B.!!$F1 | 1772 |
11 | TraesCS5B01G210200 | chr7B | 223663642 | 223664713 | 1071 | True | 798.00 | 798 | 80.343000 | 1627 | 2727 | 1 | chr7B.!!$R1 | 1100 |
12 | TraesCS5B01G210200 | chr7A | 257362363 | 257364088 | 1725 | True | 2684.00 | 2684 | 94.629000 | 983 | 2727 | 1 | chr7A.!!$R1 | 1744 |
13 | TraesCS5B01G210200 | chr1A | 143282596 | 143283616 | 1020 | True | 721.00 | 721 | 79.698000 | 1678 | 2727 | 1 | chr1A.!!$R1 | 1049 |
14 | TraesCS5B01G210200 | chr1A | 502686329 | 502686978 | 649 | True | 299.80 | 508 | 84.221500 | 1 | 664 | 2 | chr1A.!!$R2 | 663 |
15 | TraesCS5B01G210200 | chr2A | 176571037 | 176571677 | 640 | True | 616.00 | 616 | 84.756000 | 1 | 626 | 1 | chr2A.!!$R1 | 625 |
16 | TraesCS5B01G210200 | chr4D | 485659344 | 485660661 | 1317 | False | 349.00 | 542 | 90.759333 | 2840 | 3595 | 3 | chr4D.!!$F1 | 755 |
17 | TraesCS5B01G210200 | chr2B | 175418334 | 175419047 | 713 | True | 349.00 | 542 | 88.777000 | 1 | 658 | 2 | chr2B.!!$R1 | 657 |
18 | TraesCS5B01G210200 | chr6A | 605057399 | 605057902 | 503 | False | 483.00 | 483 | 84.872000 | 185 | 665 | 1 | chr6A.!!$F2 | 480 |
19 | TraesCS5B01G210200 | chr4B | 270657698 | 270658208 | 510 | True | 225.05 | 377 | 90.871500 | 721 | 2713 | 2 | chr4B.!!$R1 | 1992 |
20 | TraesCS5B01G210200 | chr3D | 13928340 | 13929051 | 711 | False | 302.00 | 302 | 75.962000 | 1 | 665 | 1 | chr3D.!!$F1 | 664 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
692 | 737 | 0.034337 | GTACAGGCTCGTTCCACCAA | 59.966 | 55.0 | 0.0 | 0.0 | 0.0 | 3.67 | F |
693 | 738 | 0.320374 | TACAGGCTCGTTCCACCAAG | 59.680 | 55.0 | 0.0 | 0.0 | 0.0 | 3.61 | F |
912 | 957 | 0.397941 | TGAACCAGTTGAGAGGGCAG | 59.602 | 55.0 | 0.0 | 0.0 | 0.0 | 4.85 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1495 | 1544 | 0.033405 | TGGTAGTCGAAGGAGGGGAG | 60.033 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 | R |
2309 | 2380 | 1.022982 | CGCTTCTGCAGATCCAGCAA | 61.023 | 55.000 | 29.13 | 10.12 | 42.17 | 3.91 | R |
2780 | 3122 | 1.079127 | CAACTCCGCCTTCGTCCAT | 60.079 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
355 | 393 | 9.838975 | ACCAAATTTGAAAACTTTGAACAATTC | 57.161 | 25.926 | 19.86 | 0.00 | 32.83 | 2.17 |
474 | 519 | 9.554395 | AAACAGAAACAGAAAAAGGAAGAAAAA | 57.446 | 25.926 | 0.00 | 0.00 | 0.00 | 1.94 |
530 | 575 | 2.971660 | AAACCAGGAAAAACCGGTTG | 57.028 | 45.000 | 23.08 | 7.78 | 46.44 | 3.77 |
531 | 576 | 2.146920 | AACCAGGAAAAACCGGTTGA | 57.853 | 45.000 | 23.08 | 0.00 | 45.89 | 3.18 |
532 | 577 | 1.687563 | ACCAGGAAAAACCGGTTGAG | 58.312 | 50.000 | 23.08 | 7.24 | 44.74 | 3.02 |
533 | 578 | 1.213430 | ACCAGGAAAAACCGGTTGAGA | 59.787 | 47.619 | 23.08 | 0.00 | 44.74 | 3.27 |
534 | 579 | 1.880027 | CCAGGAAAAACCGGTTGAGAG | 59.120 | 52.381 | 23.08 | 9.05 | 44.74 | 3.20 |
535 | 580 | 2.486548 | CCAGGAAAAACCGGTTGAGAGA | 60.487 | 50.000 | 23.08 | 0.00 | 44.74 | 3.10 |
536 | 581 | 3.211045 | CAGGAAAAACCGGTTGAGAGAA | 58.789 | 45.455 | 23.08 | 0.00 | 44.74 | 2.87 |
537 | 582 | 3.003378 | CAGGAAAAACCGGTTGAGAGAAC | 59.997 | 47.826 | 23.08 | 7.97 | 44.74 | 3.01 |
538 | 583 | 2.292569 | GGAAAAACCGGTTGAGAGAACC | 59.707 | 50.000 | 23.08 | 13.40 | 36.96 | 3.62 |
539 | 584 | 3.211865 | GAAAAACCGGTTGAGAGAACCT | 58.788 | 45.455 | 23.08 | 0.00 | 38.15 | 3.50 |
540 | 585 | 3.292492 | AAAACCGGTTGAGAGAACCTT | 57.708 | 42.857 | 23.08 | 4.80 | 38.15 | 3.50 |
541 | 586 | 2.545537 | AACCGGTTGAGAGAACCTTC | 57.454 | 50.000 | 21.56 | 0.00 | 38.15 | 3.46 |
542 | 587 | 1.718280 | ACCGGTTGAGAGAACCTTCT | 58.282 | 50.000 | 0.00 | 0.00 | 41.00 | 2.85 |
543 | 588 | 2.885616 | ACCGGTTGAGAGAACCTTCTA | 58.114 | 47.619 | 0.00 | 0.00 | 37.73 | 2.10 |
544 | 589 | 2.826725 | ACCGGTTGAGAGAACCTTCTAG | 59.173 | 50.000 | 0.00 | 0.00 | 37.73 | 2.43 |
545 | 590 | 3.090037 | CCGGTTGAGAGAACCTTCTAGA | 58.910 | 50.000 | 0.00 | 0.00 | 37.73 | 2.43 |
546 | 591 | 3.510360 | CCGGTTGAGAGAACCTTCTAGAA | 59.490 | 47.826 | 4.81 | 4.81 | 37.73 | 2.10 |
547 | 592 | 4.381079 | CCGGTTGAGAGAACCTTCTAGAAG | 60.381 | 50.000 | 23.31 | 23.31 | 37.73 | 2.85 |
560 | 605 | 3.412237 | TCTAGAAGGTTCCCAAAACCG | 57.588 | 47.619 | 0.00 | 0.00 | 44.82 | 4.44 |
561 | 606 | 2.039348 | TCTAGAAGGTTCCCAAAACCGG | 59.961 | 50.000 | 0.00 | 0.00 | 44.82 | 5.28 |
562 | 607 | 0.554305 | AGAAGGTTCCCAAAACCGGT | 59.446 | 50.000 | 0.00 | 0.00 | 44.82 | 5.28 |
563 | 608 | 1.063492 | AGAAGGTTCCCAAAACCGGTT | 60.063 | 47.619 | 15.86 | 15.86 | 44.82 | 4.44 |
564 | 609 | 1.758280 | GAAGGTTCCCAAAACCGGTTT | 59.242 | 47.619 | 26.87 | 26.87 | 44.82 | 3.27 |
565 | 610 | 1.116308 | AGGTTCCCAAAACCGGTTTG | 58.884 | 50.000 | 32.23 | 23.60 | 45.36 | 2.93 |
566 | 611 | 0.531090 | GGTTCCCAAAACCGGTTTGC | 60.531 | 55.000 | 32.23 | 17.05 | 44.57 | 3.68 |
567 | 612 | 0.531090 | GTTCCCAAAACCGGTTTGCC | 60.531 | 55.000 | 32.23 | 13.01 | 44.57 | 4.52 |
568 | 613 | 0.688087 | TTCCCAAAACCGGTTTGCCT | 60.688 | 50.000 | 32.23 | 15.08 | 44.57 | 4.75 |
569 | 614 | 1.068921 | CCCAAAACCGGTTTGCCTG | 59.931 | 57.895 | 32.23 | 24.88 | 44.57 | 4.85 |
570 | 615 | 1.068921 | CCAAAACCGGTTTGCCTGG | 59.931 | 57.895 | 32.23 | 29.13 | 44.57 | 4.45 |
571 | 616 | 1.395826 | CCAAAACCGGTTTGCCTGGA | 61.396 | 55.000 | 32.33 | 0.00 | 44.57 | 3.86 |
572 | 617 | 0.461961 | CAAAACCGGTTTGCCTGGAA | 59.538 | 50.000 | 32.23 | 0.00 | 40.25 | 3.53 |
573 | 618 | 0.462375 | AAAACCGGTTTGCCTGGAAC | 59.538 | 50.000 | 32.23 | 0.00 | 34.21 | 3.62 |
574 | 619 | 0.396556 | AAACCGGTTTGCCTGGAACT | 60.397 | 50.000 | 31.17 | 3.09 | 34.21 | 3.01 |
575 | 620 | 1.106944 | AACCGGTTTGCCTGGAACTG | 61.107 | 55.000 | 15.86 | 0.00 | 34.21 | 3.16 |
576 | 621 | 2.644992 | CGGTTTGCCTGGAACTGC | 59.355 | 61.111 | 0.00 | 0.00 | 0.00 | 4.40 |
577 | 622 | 1.898574 | CGGTTTGCCTGGAACTGCT | 60.899 | 57.895 | 0.00 | 0.00 | 0.00 | 4.24 |
578 | 623 | 1.856265 | CGGTTTGCCTGGAACTGCTC | 61.856 | 60.000 | 0.00 | 0.00 | 0.00 | 4.26 |
579 | 624 | 0.538287 | GGTTTGCCTGGAACTGCTCT | 60.538 | 55.000 | 0.00 | 0.00 | 0.00 | 4.09 |
580 | 625 | 1.271379 | GGTTTGCCTGGAACTGCTCTA | 60.271 | 52.381 | 0.00 | 0.00 | 0.00 | 2.43 |
581 | 626 | 2.504367 | GTTTGCCTGGAACTGCTCTAA | 58.496 | 47.619 | 0.00 | 0.00 | 0.00 | 2.10 |
582 | 627 | 2.884639 | GTTTGCCTGGAACTGCTCTAAA | 59.115 | 45.455 | 0.00 | 0.00 | 0.00 | 1.85 |
583 | 628 | 2.479566 | TGCCTGGAACTGCTCTAAAG | 57.520 | 50.000 | 0.00 | 0.00 | 0.00 | 1.85 |
594 | 639 | 1.646189 | GCTCTAAAGCTCGAAGTGGG | 58.354 | 55.000 | 0.00 | 0.00 | 45.55 | 4.61 |
595 | 640 | 1.646189 | CTCTAAAGCTCGAAGTGGGC | 58.354 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
596 | 641 | 0.249398 | TCTAAAGCTCGAAGTGGGCC | 59.751 | 55.000 | 0.00 | 0.00 | 0.00 | 5.80 |
597 | 642 | 1.079405 | TAAAGCTCGAAGTGGGCCG | 60.079 | 57.895 | 0.00 | 0.00 | 0.00 | 6.13 |
598 | 643 | 1.537814 | TAAAGCTCGAAGTGGGCCGA | 61.538 | 55.000 | 0.00 | 0.00 | 0.00 | 5.54 |
599 | 644 | 3.591254 | AAGCTCGAAGTGGGCCGAC | 62.591 | 63.158 | 10.38 | 10.38 | 0.00 | 4.79 |
610 | 655 | 3.666253 | GGCCGACCCGTTTTGTGG | 61.666 | 66.667 | 0.00 | 0.00 | 0.00 | 4.17 |
611 | 656 | 2.903350 | GCCGACCCGTTTTGTGGT | 60.903 | 61.111 | 0.00 | 0.00 | 37.64 | 4.16 |
612 | 657 | 3.027292 | CCGACCCGTTTTGTGGTG | 58.973 | 61.111 | 0.00 | 0.00 | 34.20 | 4.17 |
613 | 658 | 2.330041 | CGACCCGTTTTGTGGTGC | 59.670 | 61.111 | 0.00 | 0.00 | 34.20 | 5.01 |
614 | 659 | 2.184167 | CGACCCGTTTTGTGGTGCT | 61.184 | 57.895 | 0.00 | 0.00 | 34.20 | 4.40 |
615 | 660 | 1.652563 | GACCCGTTTTGTGGTGCTC | 59.347 | 57.895 | 0.00 | 0.00 | 34.20 | 4.26 |
616 | 661 | 2.113131 | GACCCGTTTTGTGGTGCTCG | 62.113 | 60.000 | 0.00 | 0.00 | 34.20 | 5.03 |
617 | 662 | 2.051345 | CCGTTTTGTGGTGCTCGC | 60.051 | 61.111 | 0.00 | 0.00 | 0.00 | 5.03 |
618 | 663 | 2.542907 | CCGTTTTGTGGTGCTCGCT | 61.543 | 57.895 | 0.00 | 0.00 | 0.00 | 4.93 |
619 | 664 | 1.082756 | CGTTTTGTGGTGCTCGCTC | 60.083 | 57.895 | 0.00 | 0.00 | 0.00 | 5.03 |
620 | 665 | 1.282875 | GTTTTGTGGTGCTCGCTCC | 59.717 | 57.895 | 3.17 | 3.17 | 0.00 | 4.70 |
621 | 666 | 1.153066 | TTTTGTGGTGCTCGCTCCA | 60.153 | 52.632 | 8.49 | 8.49 | 37.27 | 3.86 |
622 | 667 | 1.165907 | TTTTGTGGTGCTCGCTCCAG | 61.166 | 55.000 | 12.50 | 0.00 | 39.82 | 3.86 |
623 | 668 | 4.687215 | TGTGGTGCTCGCTCCAGC | 62.687 | 66.667 | 12.50 | 8.66 | 39.82 | 4.85 |
654 | 699 | 3.688136 | GCTCGCGAGCGTCAAATA | 58.312 | 55.556 | 41.53 | 0.18 | 45.29 | 1.40 |
655 | 700 | 1.555538 | GCTCGCGAGCGTCAAATAG | 59.444 | 57.895 | 41.53 | 12.81 | 45.29 | 1.73 |
656 | 701 | 1.812214 | GCTCGCGAGCGTCAAATAGG | 61.812 | 60.000 | 41.53 | 12.25 | 45.29 | 2.57 |
657 | 702 | 1.209275 | CTCGCGAGCGTCAAATAGGG | 61.209 | 60.000 | 25.07 | 0.00 | 40.74 | 3.53 |
658 | 703 | 1.226859 | CGCGAGCGTCAAATAGGGA | 60.227 | 57.895 | 0.00 | 0.00 | 34.35 | 4.20 |
659 | 704 | 0.597637 | CGCGAGCGTCAAATAGGGAT | 60.598 | 55.000 | 0.00 | 0.00 | 34.35 | 3.85 |
660 | 705 | 1.140816 | GCGAGCGTCAAATAGGGATC | 58.859 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
661 | 706 | 1.409412 | CGAGCGTCAAATAGGGATCG | 58.591 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
662 | 707 | 1.140816 | GAGCGTCAAATAGGGATCGC | 58.859 | 55.000 | 0.54 | 0.54 | 43.16 | 4.58 |
663 | 708 | 0.249911 | AGCGTCAAATAGGGATCGCC | 60.250 | 55.000 | 6.09 | 0.00 | 43.73 | 5.54 |
664 | 709 | 1.557443 | GCGTCAAATAGGGATCGCCG | 61.557 | 60.000 | 6.09 | 2.21 | 38.16 | 6.46 |
665 | 710 | 0.249322 | CGTCAAATAGGGATCGCCGT | 60.249 | 55.000 | 6.09 | 0.00 | 36.08 | 5.68 |
666 | 711 | 1.001048 | CGTCAAATAGGGATCGCCGTA | 60.001 | 52.381 | 6.09 | 0.00 | 38.76 | 4.02 |
667 | 712 | 2.673833 | GTCAAATAGGGATCGCCGTAG | 58.326 | 52.381 | 6.09 | 0.00 | 37.89 | 3.51 |
668 | 713 | 1.000506 | TCAAATAGGGATCGCCGTAGC | 59.999 | 52.381 | 6.09 | 0.00 | 37.89 | 3.58 |
669 | 714 | 1.000955 | CAAATAGGGATCGCCGTAGCT | 59.999 | 52.381 | 6.09 | 0.00 | 37.89 | 3.32 |
670 | 715 | 0.889306 | AATAGGGATCGCCGTAGCTC | 59.111 | 55.000 | 6.09 | 0.00 | 37.89 | 4.09 |
671 | 716 | 0.038455 | ATAGGGATCGCCGTAGCTCT | 59.962 | 55.000 | 6.09 | 0.00 | 37.89 | 4.09 |
672 | 717 | 0.605860 | TAGGGATCGCCGTAGCTCTC | 60.606 | 60.000 | 6.09 | 0.00 | 36.60 | 3.20 |
673 | 718 | 2.252855 | GGATCGCCGTAGCTCTCG | 59.747 | 66.667 | 0.00 | 0.00 | 36.60 | 4.04 |
674 | 719 | 2.544698 | GGATCGCCGTAGCTCTCGT | 61.545 | 63.158 | 9.69 | 0.00 | 36.60 | 4.18 |
675 | 720 | 1.226686 | GGATCGCCGTAGCTCTCGTA | 61.227 | 60.000 | 9.69 | 0.00 | 36.60 | 3.43 |
676 | 721 | 0.110733 | GATCGCCGTAGCTCTCGTAC | 60.111 | 60.000 | 9.69 | 0.00 | 36.60 | 3.67 |
677 | 722 | 0.812811 | ATCGCCGTAGCTCTCGTACA | 60.813 | 55.000 | 9.69 | 0.00 | 36.60 | 2.90 |
678 | 723 | 1.011019 | CGCCGTAGCTCTCGTACAG | 60.011 | 63.158 | 9.69 | 0.00 | 36.60 | 2.74 |
679 | 724 | 1.355916 | GCCGTAGCTCTCGTACAGG | 59.644 | 63.158 | 9.69 | 1.62 | 35.50 | 4.00 |
680 | 725 | 1.355916 | CCGTAGCTCTCGTACAGGC | 59.644 | 63.158 | 9.69 | 0.00 | 0.00 | 4.85 |
681 | 726 | 1.096386 | CCGTAGCTCTCGTACAGGCT | 61.096 | 60.000 | 9.69 | 4.16 | 38.62 | 4.58 |
682 | 727 | 0.305313 | CGTAGCTCTCGTACAGGCTC | 59.695 | 60.000 | 0.00 | 0.00 | 36.40 | 4.70 |
683 | 728 | 0.305313 | GTAGCTCTCGTACAGGCTCG | 59.695 | 60.000 | 0.00 | 0.00 | 36.40 | 5.03 |
684 | 729 | 0.107800 | TAGCTCTCGTACAGGCTCGT | 60.108 | 55.000 | 0.00 | 0.00 | 36.40 | 4.18 |
685 | 730 | 0.961358 | AGCTCTCGTACAGGCTCGTT | 60.961 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
686 | 731 | 0.523757 | GCTCTCGTACAGGCTCGTTC | 60.524 | 60.000 | 0.00 | 0.00 | 0.00 | 3.95 |
687 | 732 | 0.099082 | CTCTCGTACAGGCTCGTTCC | 59.901 | 60.000 | 0.00 | 0.00 | 0.00 | 3.62 |
688 | 733 | 0.607217 | TCTCGTACAGGCTCGTTCCA | 60.607 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
689 | 734 | 0.456312 | CTCGTACAGGCTCGTTCCAC | 60.456 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
690 | 735 | 1.445582 | CGTACAGGCTCGTTCCACC | 60.446 | 63.158 | 0.00 | 0.00 | 0.00 | 4.61 |
691 | 736 | 1.669440 | GTACAGGCTCGTTCCACCA | 59.331 | 57.895 | 0.00 | 0.00 | 0.00 | 4.17 |
692 | 737 | 0.034337 | GTACAGGCTCGTTCCACCAA | 59.966 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
693 | 738 | 0.320374 | TACAGGCTCGTTCCACCAAG | 59.680 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
694 | 739 | 2.032681 | AGGCTCGTTCCACCAAGC | 59.967 | 61.111 | 0.00 | 0.00 | 0.00 | 4.01 |
695 | 740 | 3.423154 | GGCTCGTTCCACCAAGCG | 61.423 | 66.667 | 0.00 | 0.00 | 35.58 | 4.68 |
696 | 741 | 4.090057 | GCTCGTTCCACCAAGCGC | 62.090 | 66.667 | 0.00 | 0.00 | 0.00 | 5.92 |
697 | 742 | 3.423154 | CTCGTTCCACCAAGCGCC | 61.423 | 66.667 | 2.29 | 0.00 | 0.00 | 6.53 |
715 | 760 | 4.681978 | GCCGTGCCCTCGTCAACT | 62.682 | 66.667 | 0.00 | 0.00 | 0.00 | 3.16 |
716 | 761 | 2.432628 | CCGTGCCCTCGTCAACTC | 60.433 | 66.667 | 0.00 | 0.00 | 0.00 | 3.01 |
717 | 762 | 2.432628 | CGTGCCCTCGTCAACTCC | 60.433 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
718 | 763 | 2.432628 | GTGCCCTCGTCAACTCCG | 60.433 | 66.667 | 0.00 | 0.00 | 0.00 | 4.63 |
719 | 764 | 4.373116 | TGCCCTCGTCAACTCCGC | 62.373 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
721 | 766 | 4.796231 | CCCTCGTCAACTCCGCCG | 62.796 | 72.222 | 0.00 | 0.00 | 0.00 | 6.46 |
797 | 842 | 4.090057 | GCCCTTGTCAAGCGACGC | 62.090 | 66.667 | 13.03 | 13.03 | 45.80 | 5.19 |
798 | 843 | 3.423154 | CCCTTGTCAAGCGACGCC | 61.423 | 66.667 | 17.79 | 0.92 | 45.80 | 5.68 |
799 | 844 | 3.777925 | CCTTGTCAAGCGACGCCG | 61.778 | 66.667 | 17.79 | 8.50 | 45.80 | 6.46 |
897 | 942 | 3.110178 | CCTCGTTCGCCCGTGAAC | 61.110 | 66.667 | 10.43 | 10.43 | 43.76 | 3.18 |
898 | 943 | 3.110178 | CTCGTTCGCCCGTGAACC | 61.110 | 66.667 | 13.89 | 0.00 | 44.22 | 3.62 |
900 | 945 | 3.411351 | CGTTCGCCCGTGAACCAG | 61.411 | 66.667 | 13.89 | 0.00 | 44.22 | 4.00 |
912 | 957 | 0.397941 | TGAACCAGTTGAGAGGGCAG | 59.602 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
923 | 968 | 0.480252 | AGAGGGCAGCACTTCCTTTT | 59.520 | 50.000 | 0.00 | 0.00 | 0.00 | 2.27 |
1625 | 1674 | 1.194781 | TTTCTCCTCCGCTGCTCCTT | 61.195 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2233 | 2304 | 2.289882 | TGGATGGATTCGCTGGATGATC | 60.290 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 |
2309 | 2380 | 0.175073 | GCACCTCCTCCGTCGTTTAT | 59.825 | 55.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2584 | 2776 | 4.304939 | AGAAGAAACGTAAAAGAGACCCG | 58.695 | 43.478 | 0.00 | 0.00 | 0.00 | 5.28 |
2731 | 3073 | 3.367025 | GTGGAGACAGATAAAAACCGTCG | 59.633 | 47.826 | 0.00 | 0.00 | 44.46 | 5.12 |
2746 | 3088 | 1.134788 | CCGTCGCCTTCTCCACTTATT | 60.135 | 52.381 | 0.00 | 0.00 | 0.00 | 1.40 |
2770 | 3112 | 2.172930 | GGTGATAAACTCCCCCTTCTCC | 59.827 | 54.545 | 0.00 | 0.00 | 0.00 | 3.71 |
2780 | 3122 | 1.284785 | CCCCCTTCTCCACTTATTGCA | 59.715 | 52.381 | 0.00 | 0.00 | 0.00 | 4.08 |
2806 | 3148 | 0.613260 | AAGGCGGAGTTGCATGTCTA | 59.387 | 50.000 | 0.00 | 0.00 | 36.28 | 2.59 |
2807 | 3149 | 0.613260 | AGGCGGAGTTGCATGTCTAA | 59.387 | 50.000 | 0.00 | 0.00 | 36.28 | 2.10 |
2835 | 3177 | 4.085357 | TGACCAAGTTAGTTGCATGTCT | 57.915 | 40.909 | 0.00 | 0.00 | 34.45 | 3.41 |
2843 | 3185 | 4.037923 | AGTTAGTTGCATGTCTTTGTTGGG | 59.962 | 41.667 | 0.00 | 0.00 | 0.00 | 4.12 |
2903 | 3245 | 6.417635 | ACTTGATTTTCGTGTGTTGCTAAATG | 59.582 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
2929 | 3271 | 9.298250 | GTCTAACTTGGTCATATACTCAGGATA | 57.702 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
2963 | 3305 | 2.851102 | AGGCTGGCAGTCACCTGT | 60.851 | 61.111 | 22.82 | 0.00 | 41.02 | 4.00 |
3028 | 3372 | 2.170187 | GACTGCAGGAGGACATGAAGAT | 59.830 | 50.000 | 19.93 | 0.00 | 35.69 | 2.40 |
3037 | 3381 | 1.802960 | GGACATGAAGATATGCGCTGG | 59.197 | 52.381 | 9.73 | 0.00 | 0.00 | 4.85 |
3053 | 3397 | 1.141053 | GCTGGTTTAGATCCACCCGAT | 59.859 | 52.381 | 4.31 | 0.00 | 31.24 | 4.18 |
3372 | 4371 | 2.530701 | AGTGTGATTCGGAGGAGACTT | 58.469 | 47.619 | 0.00 | 0.00 | 44.43 | 3.01 |
3431 | 4436 | 4.254492 | GGCTTCACTATTTTTCCTCTCGT | 58.746 | 43.478 | 0.00 | 0.00 | 0.00 | 4.18 |
3599 | 4607 | 8.519799 | TTGGATTTTTGTTCAGATATACTCCC | 57.480 | 34.615 | 0.00 | 0.00 | 0.00 | 4.30 |
3600 | 4608 | 7.872138 | TGGATTTTTGTTCAGATATACTCCCT | 58.128 | 34.615 | 0.00 | 0.00 | 0.00 | 4.20 |
3601 | 4609 | 7.993183 | TGGATTTTTGTTCAGATATACTCCCTC | 59.007 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
3602 | 4610 | 8.214364 | GGATTTTTGTTCAGATATACTCCCTCT | 58.786 | 37.037 | 0.00 | 0.00 | 0.00 | 3.69 |
3603 | 4611 | 8.970859 | ATTTTTGTTCAGATATACTCCCTCTG | 57.029 | 34.615 | 0.00 | 0.00 | 38.18 | 3.35 |
3604 | 4612 | 7.496346 | TTTTGTTCAGATATACTCCCTCTGT | 57.504 | 36.000 | 0.00 | 0.00 | 38.05 | 3.41 |
3605 | 4613 | 7.496346 | TTTGTTCAGATATACTCCCTCTGTT | 57.504 | 36.000 | 0.00 | 0.00 | 38.05 | 3.16 |
3606 | 4614 | 6.716934 | TGTTCAGATATACTCCCTCTGTTC | 57.283 | 41.667 | 0.00 | 0.00 | 38.05 | 3.18 |
3607 | 4615 | 5.598830 | TGTTCAGATATACTCCCTCTGTTCC | 59.401 | 44.000 | 0.00 | 0.00 | 38.05 | 3.62 |
3608 | 4616 | 4.399219 | TCAGATATACTCCCTCTGTTCCG | 58.601 | 47.826 | 0.00 | 0.00 | 38.05 | 4.30 |
3609 | 4617 | 4.104261 | TCAGATATACTCCCTCTGTTCCGA | 59.896 | 45.833 | 0.00 | 0.00 | 38.05 | 4.55 |
3610 | 4618 | 4.827835 | CAGATATACTCCCTCTGTTCCGAA | 59.172 | 45.833 | 0.00 | 0.00 | 33.34 | 4.30 |
3611 | 4619 | 5.478679 | CAGATATACTCCCTCTGTTCCGAAT | 59.521 | 44.000 | 0.00 | 0.00 | 33.34 | 3.34 |
3612 | 4620 | 6.015010 | CAGATATACTCCCTCTGTTCCGAATT | 60.015 | 42.308 | 0.00 | 0.00 | 33.34 | 2.17 |
3613 | 4621 | 7.176865 | CAGATATACTCCCTCTGTTCCGAATTA | 59.823 | 40.741 | 0.00 | 0.00 | 33.34 | 1.40 |
3614 | 4622 | 3.889520 | ACTCCCTCTGTTCCGAATTAC | 57.110 | 47.619 | 0.00 | 0.00 | 0.00 | 1.89 |
3615 | 4623 | 3.442076 | ACTCCCTCTGTTCCGAATTACT | 58.558 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
3616 | 4624 | 3.838903 | ACTCCCTCTGTTCCGAATTACTT | 59.161 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
3617 | 4625 | 4.184629 | CTCCCTCTGTTCCGAATTACTTG | 58.815 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
3618 | 4626 | 3.581332 | TCCCTCTGTTCCGAATTACTTGT | 59.419 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
3619 | 4627 | 3.933332 | CCCTCTGTTCCGAATTACTTGTC | 59.067 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
3620 | 4628 | 4.322801 | CCCTCTGTTCCGAATTACTTGTCT | 60.323 | 45.833 | 0.00 | 0.00 | 0.00 | 3.41 |
3621 | 4629 | 4.865365 | CCTCTGTTCCGAATTACTTGTCTC | 59.135 | 45.833 | 0.00 | 0.00 | 0.00 | 3.36 |
3622 | 4630 | 4.482386 | TCTGTTCCGAATTACTTGTCTCG | 58.518 | 43.478 | 0.00 | 0.00 | 0.00 | 4.04 |
3630 | 4638 | 5.769367 | CGAATTACTTGTCTCGGATATGGA | 58.231 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
3631 | 4639 | 6.390721 | CGAATTACTTGTCTCGGATATGGAT | 58.609 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3632 | 4640 | 6.309009 | CGAATTACTTGTCTCGGATATGGATG | 59.691 | 42.308 | 0.00 | 0.00 | 0.00 | 3.51 |
3633 | 4641 | 6.672266 | ATTACTTGTCTCGGATATGGATGT | 57.328 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
3634 | 4642 | 7.776618 | ATTACTTGTCTCGGATATGGATGTA | 57.223 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
3635 | 4643 | 7.776618 | TTACTTGTCTCGGATATGGATGTAT | 57.223 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
3636 | 4644 | 6.274157 | ACTTGTCTCGGATATGGATGTATC | 57.726 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
3637 | 4645 | 6.013379 | ACTTGTCTCGGATATGGATGTATCT | 58.987 | 40.000 | 0.00 | 0.00 | 32.78 | 1.98 |
3638 | 4646 | 7.175797 | ACTTGTCTCGGATATGGATGTATCTA | 58.824 | 38.462 | 0.00 | 0.00 | 32.78 | 1.98 |
3639 | 4647 | 7.338196 | ACTTGTCTCGGATATGGATGTATCTAG | 59.662 | 40.741 | 0.00 | 0.00 | 32.78 | 2.43 |
3640 | 4648 | 6.958767 | TGTCTCGGATATGGATGTATCTAGA | 58.041 | 40.000 | 0.00 | 0.00 | 32.78 | 2.43 |
3641 | 4649 | 7.402862 | TGTCTCGGATATGGATGTATCTAGAA | 58.597 | 38.462 | 0.00 | 0.00 | 31.35 | 2.10 |
3642 | 4650 | 7.337184 | TGTCTCGGATATGGATGTATCTAGAAC | 59.663 | 40.741 | 0.00 | 0.00 | 31.35 | 3.01 |
3643 | 4651 | 7.554835 | GTCTCGGATATGGATGTATCTAGAACT | 59.445 | 40.741 | 0.00 | 0.00 | 31.35 | 3.01 |
3644 | 4652 | 8.769359 | TCTCGGATATGGATGTATCTAGAACTA | 58.231 | 37.037 | 0.00 | 0.00 | 32.78 | 2.24 |
3645 | 4653 | 9.397280 | CTCGGATATGGATGTATCTAGAACTAA | 57.603 | 37.037 | 0.00 | 0.00 | 32.78 | 2.24 |
3646 | 4654 | 9.175312 | TCGGATATGGATGTATCTAGAACTAAC | 57.825 | 37.037 | 0.00 | 0.00 | 32.78 | 2.34 |
3647 | 4655 | 8.957466 | CGGATATGGATGTATCTAGAACTAACA | 58.043 | 37.037 | 0.00 | 0.00 | 32.78 | 2.41 |
3674 | 4682 | 8.637196 | ACATCTAGATACATCCATTTCTACGA | 57.363 | 34.615 | 4.54 | 0.00 | 0.00 | 3.43 |
3675 | 4683 | 8.516234 | ACATCTAGATACATCCATTTCTACGAC | 58.484 | 37.037 | 4.54 | 0.00 | 0.00 | 4.34 |
3676 | 4684 | 8.515414 | CATCTAGATACATCCATTTCTACGACA | 58.485 | 37.037 | 4.54 | 0.00 | 0.00 | 4.35 |
3677 | 4685 | 8.459911 | TCTAGATACATCCATTTCTACGACAA | 57.540 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
3678 | 4686 | 8.568794 | TCTAGATACATCCATTTCTACGACAAG | 58.431 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
3679 | 4687 | 7.113658 | AGATACATCCATTTCTACGACAAGT | 57.886 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3680 | 4688 | 8.234136 | AGATACATCCATTTCTACGACAAGTA | 57.766 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
3681 | 4689 | 8.692710 | AGATACATCCATTTCTACGACAAGTAA | 58.307 | 33.333 | 0.00 | 0.00 | 34.45 | 2.24 |
3682 | 4690 | 9.477484 | GATACATCCATTTCTACGACAAGTAAT | 57.523 | 33.333 | 0.00 | 0.00 | 34.45 | 1.89 |
3683 | 4691 | 9.832445 | ATACATCCATTTCTACGACAAGTAATT | 57.168 | 29.630 | 0.00 | 0.00 | 34.45 | 1.40 |
3684 | 4692 | 8.197988 | ACATCCATTTCTACGACAAGTAATTC | 57.802 | 34.615 | 0.00 | 0.00 | 34.45 | 2.17 |
3685 | 4693 | 7.280205 | ACATCCATTTCTACGACAAGTAATTCC | 59.720 | 37.037 | 0.00 | 0.00 | 34.45 | 3.01 |
3686 | 4694 | 5.808540 | TCCATTTCTACGACAAGTAATTCCG | 59.191 | 40.000 | 0.00 | 0.00 | 34.45 | 4.30 |
3687 | 4695 | 5.808540 | CCATTTCTACGACAAGTAATTCCGA | 59.191 | 40.000 | 0.00 | 0.00 | 34.45 | 4.55 |
3688 | 4696 | 6.311935 | CCATTTCTACGACAAGTAATTCCGAA | 59.688 | 38.462 | 0.00 | 0.00 | 34.45 | 4.30 |
3689 | 4697 | 6.695292 | TTTCTACGACAAGTAATTCCGAAC | 57.305 | 37.500 | 0.00 | 0.00 | 34.45 | 3.95 |
3690 | 4698 | 4.406069 | TCTACGACAAGTAATTCCGAACG | 58.594 | 43.478 | 0.00 | 0.00 | 34.45 | 3.95 |
3691 | 4699 | 2.331194 | ACGACAAGTAATTCCGAACGG | 58.669 | 47.619 | 6.94 | 6.94 | 0.00 | 4.44 |
3692 | 4700 | 2.030007 | ACGACAAGTAATTCCGAACGGA | 60.030 | 45.455 | 12.04 | 12.04 | 43.52 | 4.69 |
3693 | 4701 | 2.597305 | CGACAAGTAATTCCGAACGGAG | 59.403 | 50.000 | 15.34 | 5.60 | 46.06 | 4.63 |
3694 | 4702 | 2.928116 | GACAAGTAATTCCGAACGGAGG | 59.072 | 50.000 | 15.34 | 4.52 | 46.06 | 4.30 |
3695 | 4703 | 2.277084 | CAAGTAATTCCGAACGGAGGG | 58.723 | 52.381 | 15.34 | 0.00 | 46.06 | 4.30 |
3696 | 4704 | 1.856629 | AGTAATTCCGAACGGAGGGA | 58.143 | 50.000 | 15.34 | 2.49 | 46.06 | 4.20 |
3697 | 4705 | 1.755380 | AGTAATTCCGAACGGAGGGAG | 59.245 | 52.381 | 15.34 | 0.00 | 46.06 | 4.30 |
3698 | 4706 | 1.479730 | GTAATTCCGAACGGAGGGAGT | 59.520 | 52.381 | 15.34 | 4.12 | 46.06 | 3.85 |
3699 | 4707 | 1.856629 | AATTCCGAACGGAGGGAGTA | 58.143 | 50.000 | 15.34 | 1.05 | 46.06 | 2.59 |
3700 | 4708 | 1.400737 | ATTCCGAACGGAGGGAGTAG | 58.599 | 55.000 | 15.34 | 0.00 | 46.06 | 2.57 |
3701 | 4709 | 0.038744 | TTCCGAACGGAGGGAGTAGT | 59.961 | 55.000 | 15.34 | 0.00 | 46.06 | 2.73 |
3702 | 4710 | 0.038744 | TCCGAACGGAGGGAGTAGTT | 59.961 | 55.000 | 12.04 | 0.00 | 39.76 | 2.24 |
3703 | 4711 | 0.893447 | CCGAACGGAGGGAGTAGTTT | 59.107 | 55.000 | 7.53 | 0.00 | 37.50 | 2.66 |
3704 | 4712 | 1.135170 | CCGAACGGAGGGAGTAGTTTC | 60.135 | 57.143 | 7.53 | 0.00 | 37.50 | 2.78 |
3705 | 4713 | 1.542915 | CGAACGGAGGGAGTAGTTTCA | 59.457 | 52.381 | 0.00 | 0.00 | 0.00 | 2.69 |
3706 | 4714 | 2.029649 | CGAACGGAGGGAGTAGTTTCAA | 60.030 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3707 | 4715 | 3.324117 | GAACGGAGGGAGTAGTTTCAAC | 58.676 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3708 | 4716 | 2.322658 | ACGGAGGGAGTAGTTTCAACA | 58.677 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
3709 | 4717 | 2.701951 | ACGGAGGGAGTAGTTTCAACAA | 59.298 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
3710 | 4718 | 3.244112 | ACGGAGGGAGTAGTTTCAACAAG | 60.244 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
3711 | 4719 | 3.244112 | CGGAGGGAGTAGTTTCAACAAGT | 60.244 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
3712 | 4720 | 4.065789 | GGAGGGAGTAGTTTCAACAAGTG | 58.934 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
3713 | 4721 | 4.202326 | GGAGGGAGTAGTTTCAACAAGTGA | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 3.41 |
3714 | 4722 | 5.365619 | GAGGGAGTAGTTTCAACAAGTGAA | 58.634 | 41.667 | 0.00 | 0.00 | 44.74 | 3.18 |
3715 | 4723 | 5.941788 | AGGGAGTAGTTTCAACAAGTGAAT | 58.058 | 37.500 | 0.00 | 0.00 | 45.71 | 2.57 |
3716 | 4724 | 5.998363 | AGGGAGTAGTTTCAACAAGTGAATC | 59.002 | 40.000 | 0.00 | 0.00 | 45.71 | 2.52 |
3717 | 4725 | 5.998363 | GGGAGTAGTTTCAACAAGTGAATCT | 59.002 | 40.000 | 5.32 | 5.32 | 45.71 | 2.40 |
3718 | 4726 | 6.486993 | GGGAGTAGTTTCAACAAGTGAATCTT | 59.513 | 38.462 | 5.29 | 0.00 | 45.71 | 2.40 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
277 | 313 | 9.781834 | TTCAAAAATTGTTCATCGTATATCACC | 57.218 | 29.630 | 0.00 | 0.00 | 0.00 | 4.02 |
447 | 485 | 8.757164 | TTTCTTCCTTTTTCTGTTTCTGTTTC | 57.243 | 30.769 | 0.00 | 0.00 | 0.00 | 2.78 |
509 | 554 | 3.261137 | TCAACCGGTTTTTCCTGGTTTTT | 59.739 | 39.130 | 19.55 | 0.00 | 44.36 | 1.94 |
510 | 555 | 2.832733 | TCAACCGGTTTTTCCTGGTTTT | 59.167 | 40.909 | 19.55 | 0.00 | 44.36 | 2.43 |
511 | 556 | 2.429250 | CTCAACCGGTTTTTCCTGGTTT | 59.571 | 45.455 | 19.55 | 0.00 | 44.36 | 3.27 |
512 | 557 | 2.028876 | CTCAACCGGTTTTTCCTGGTT | 58.971 | 47.619 | 19.55 | 0.00 | 46.09 | 3.67 |
513 | 558 | 1.213430 | TCTCAACCGGTTTTTCCTGGT | 59.787 | 47.619 | 19.55 | 0.00 | 41.99 | 4.00 |
514 | 559 | 1.880027 | CTCTCAACCGGTTTTTCCTGG | 59.120 | 52.381 | 19.55 | 4.46 | 36.47 | 4.45 |
515 | 560 | 2.846193 | TCTCTCAACCGGTTTTTCCTG | 58.154 | 47.619 | 19.55 | 6.18 | 0.00 | 3.86 |
516 | 561 | 3.211865 | GTTCTCTCAACCGGTTTTTCCT | 58.788 | 45.455 | 19.55 | 0.00 | 0.00 | 3.36 |
517 | 562 | 2.292569 | GGTTCTCTCAACCGGTTTTTCC | 59.707 | 50.000 | 19.55 | 9.59 | 0.00 | 3.13 |
518 | 563 | 3.211865 | AGGTTCTCTCAACCGGTTTTTC | 58.788 | 45.455 | 19.55 | 4.13 | 44.82 | 2.29 |
519 | 564 | 3.292492 | AGGTTCTCTCAACCGGTTTTT | 57.708 | 42.857 | 19.55 | 0.00 | 44.82 | 1.94 |
520 | 565 | 3.118000 | AGAAGGTTCTCTCAACCGGTTTT | 60.118 | 43.478 | 19.55 | 5.89 | 44.82 | 2.43 |
521 | 566 | 2.438392 | AGAAGGTTCTCTCAACCGGTTT | 59.562 | 45.455 | 19.55 | 0.00 | 44.82 | 3.27 |
522 | 567 | 2.047830 | AGAAGGTTCTCTCAACCGGTT | 58.952 | 47.619 | 15.86 | 15.86 | 44.82 | 4.44 |
523 | 568 | 1.718280 | AGAAGGTTCTCTCAACCGGT | 58.282 | 50.000 | 0.00 | 0.00 | 44.82 | 5.28 |
524 | 569 | 3.090037 | TCTAGAAGGTTCTCTCAACCGG | 58.910 | 50.000 | 0.00 | 0.00 | 44.82 | 5.28 |
525 | 570 | 4.739195 | CTTCTAGAAGGTTCTCTCAACCG | 58.261 | 47.826 | 22.67 | 0.00 | 44.82 | 4.44 |
548 | 593 | 0.531090 | GGCAAACCGGTTTTGGGAAC | 60.531 | 55.000 | 29.74 | 14.15 | 44.34 | 3.62 |
549 | 594 | 0.688087 | AGGCAAACCGGTTTTGGGAA | 60.688 | 50.000 | 29.74 | 0.00 | 44.34 | 3.97 |
550 | 595 | 1.075896 | AGGCAAACCGGTTTTGGGA | 60.076 | 52.632 | 29.74 | 0.00 | 44.34 | 4.37 |
551 | 596 | 1.068921 | CAGGCAAACCGGTTTTGGG | 59.931 | 57.895 | 29.74 | 19.35 | 44.34 | 4.12 |
552 | 597 | 1.068921 | CCAGGCAAACCGGTTTTGG | 59.931 | 57.895 | 29.74 | 28.04 | 44.34 | 3.28 |
553 | 598 | 0.461961 | TTCCAGGCAAACCGGTTTTG | 59.538 | 50.000 | 29.74 | 23.68 | 46.57 | 2.44 |
554 | 599 | 0.462375 | GTTCCAGGCAAACCGGTTTT | 59.538 | 50.000 | 29.74 | 13.47 | 42.76 | 2.43 |
555 | 600 | 0.396556 | AGTTCCAGGCAAACCGGTTT | 60.397 | 50.000 | 26.87 | 26.87 | 42.76 | 3.27 |
556 | 601 | 1.106944 | CAGTTCCAGGCAAACCGGTT | 61.107 | 55.000 | 15.86 | 15.86 | 42.76 | 4.44 |
557 | 602 | 1.528309 | CAGTTCCAGGCAAACCGGT | 60.528 | 57.895 | 0.00 | 0.00 | 42.76 | 5.28 |
558 | 603 | 2.919494 | GCAGTTCCAGGCAAACCGG | 61.919 | 63.158 | 0.00 | 0.00 | 42.76 | 5.28 |
559 | 604 | 1.856265 | GAGCAGTTCCAGGCAAACCG | 61.856 | 60.000 | 0.00 | 0.00 | 42.76 | 4.44 |
560 | 605 | 0.538287 | AGAGCAGTTCCAGGCAAACC | 60.538 | 55.000 | 0.00 | 0.00 | 0.00 | 3.27 |
561 | 606 | 2.185004 | TAGAGCAGTTCCAGGCAAAC | 57.815 | 50.000 | 0.00 | 0.00 | 0.00 | 2.93 |
562 | 607 | 2.949177 | TTAGAGCAGTTCCAGGCAAA | 57.051 | 45.000 | 0.00 | 0.00 | 0.00 | 3.68 |
563 | 608 | 2.783135 | CTTTAGAGCAGTTCCAGGCAA | 58.217 | 47.619 | 0.00 | 0.00 | 0.00 | 4.52 |
564 | 609 | 2.479566 | CTTTAGAGCAGTTCCAGGCA | 57.520 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
576 | 621 | 1.646189 | GCCCACTTCGAGCTTTAGAG | 58.354 | 55.000 | 0.00 | 0.00 | 0.00 | 2.43 |
577 | 622 | 0.249398 | GGCCCACTTCGAGCTTTAGA | 59.751 | 55.000 | 0.00 | 0.00 | 0.00 | 2.10 |
578 | 623 | 1.084370 | CGGCCCACTTCGAGCTTTAG | 61.084 | 60.000 | 0.00 | 0.00 | 0.00 | 1.85 |
579 | 624 | 1.079405 | CGGCCCACTTCGAGCTTTA | 60.079 | 57.895 | 0.00 | 0.00 | 0.00 | 1.85 |
580 | 625 | 2.358737 | CGGCCCACTTCGAGCTTT | 60.359 | 61.111 | 0.00 | 0.00 | 0.00 | 3.51 |
581 | 626 | 3.311110 | TCGGCCCACTTCGAGCTT | 61.311 | 61.111 | 0.00 | 0.00 | 0.00 | 3.74 |
582 | 627 | 4.070552 | GTCGGCCCACTTCGAGCT | 62.071 | 66.667 | 0.00 | 0.00 | 36.00 | 4.09 |
593 | 638 | 3.666253 | CCACAAAACGGGTCGGCC | 61.666 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
594 | 639 | 2.903350 | ACCACAAAACGGGTCGGC | 60.903 | 61.111 | 0.00 | 0.00 | 29.34 | 5.54 |
595 | 640 | 3.027292 | CACCACAAAACGGGTCGG | 58.973 | 61.111 | 0.00 | 0.00 | 34.45 | 4.79 |
596 | 641 | 2.113131 | GAGCACCACAAAACGGGTCG | 62.113 | 60.000 | 0.00 | 0.00 | 34.45 | 4.79 |
597 | 642 | 1.652563 | GAGCACCACAAAACGGGTC | 59.347 | 57.895 | 0.00 | 0.00 | 34.45 | 4.46 |
598 | 643 | 2.184167 | CGAGCACCACAAAACGGGT | 61.184 | 57.895 | 0.00 | 0.00 | 38.10 | 5.28 |
599 | 644 | 2.637025 | CGAGCACCACAAAACGGG | 59.363 | 61.111 | 0.00 | 0.00 | 0.00 | 5.28 |
600 | 645 | 2.051345 | GCGAGCACCACAAAACGG | 60.051 | 61.111 | 0.00 | 0.00 | 0.00 | 4.44 |
601 | 646 | 1.082756 | GAGCGAGCACCACAAAACG | 60.083 | 57.895 | 0.00 | 0.00 | 0.00 | 3.60 |
602 | 647 | 1.282875 | GGAGCGAGCACCACAAAAC | 59.717 | 57.895 | 6.67 | 0.00 | 0.00 | 2.43 |
603 | 648 | 1.153066 | TGGAGCGAGCACCACAAAA | 60.153 | 52.632 | 10.11 | 0.00 | 31.92 | 2.44 |
604 | 649 | 1.597854 | CTGGAGCGAGCACCACAAA | 60.598 | 57.895 | 10.11 | 0.00 | 33.32 | 2.83 |
605 | 650 | 2.031012 | CTGGAGCGAGCACCACAA | 59.969 | 61.111 | 10.11 | 0.00 | 33.32 | 3.33 |
606 | 651 | 4.687215 | GCTGGAGCGAGCACCACA | 62.687 | 66.667 | 10.11 | 0.00 | 38.95 | 4.17 |
638 | 683 | 1.209275 | CCCTATTTGACGCTCGCGAG | 61.209 | 60.000 | 31.37 | 31.37 | 42.83 | 5.03 |
639 | 684 | 1.226859 | CCCTATTTGACGCTCGCGA | 60.227 | 57.895 | 18.98 | 9.26 | 42.83 | 5.87 |
640 | 685 | 0.597637 | ATCCCTATTTGACGCTCGCG | 60.598 | 55.000 | 10.06 | 10.06 | 46.03 | 5.87 |
641 | 686 | 1.140816 | GATCCCTATTTGACGCTCGC | 58.859 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
642 | 687 | 1.409412 | CGATCCCTATTTGACGCTCG | 58.591 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
643 | 688 | 1.140816 | GCGATCCCTATTTGACGCTC | 58.859 | 55.000 | 0.00 | 0.00 | 42.19 | 5.03 |
644 | 689 | 0.249911 | GGCGATCCCTATTTGACGCT | 60.250 | 55.000 | 0.00 | 0.00 | 44.31 | 5.07 |
645 | 690 | 1.557443 | CGGCGATCCCTATTTGACGC | 61.557 | 60.000 | 0.00 | 0.00 | 44.18 | 5.19 |
646 | 691 | 0.249322 | ACGGCGATCCCTATTTGACG | 60.249 | 55.000 | 16.62 | 0.00 | 0.00 | 4.35 |
647 | 692 | 2.673833 | CTACGGCGATCCCTATTTGAC | 58.326 | 52.381 | 16.62 | 0.00 | 0.00 | 3.18 |
648 | 693 | 1.000506 | GCTACGGCGATCCCTATTTGA | 59.999 | 52.381 | 16.62 | 0.00 | 0.00 | 2.69 |
649 | 694 | 1.000955 | AGCTACGGCGATCCCTATTTG | 59.999 | 52.381 | 16.62 | 0.00 | 44.37 | 2.32 |
650 | 695 | 1.272769 | GAGCTACGGCGATCCCTATTT | 59.727 | 52.381 | 16.62 | 0.00 | 44.37 | 1.40 |
651 | 696 | 0.889306 | GAGCTACGGCGATCCCTATT | 59.111 | 55.000 | 16.62 | 0.00 | 44.37 | 1.73 |
652 | 697 | 0.038455 | AGAGCTACGGCGATCCCTAT | 59.962 | 55.000 | 16.62 | 0.00 | 44.37 | 2.57 |
653 | 698 | 0.605860 | GAGAGCTACGGCGATCCCTA | 60.606 | 60.000 | 16.62 | 0.00 | 44.37 | 3.53 |
654 | 699 | 1.899534 | GAGAGCTACGGCGATCCCT | 60.900 | 63.158 | 16.62 | 3.62 | 44.37 | 4.20 |
655 | 700 | 2.646143 | GAGAGCTACGGCGATCCC | 59.354 | 66.667 | 16.62 | 0.00 | 44.37 | 3.85 |
656 | 701 | 1.226686 | TACGAGAGCTACGGCGATCC | 61.227 | 60.000 | 16.62 | 0.00 | 44.37 | 3.36 |
657 | 702 | 0.110733 | GTACGAGAGCTACGGCGATC | 60.111 | 60.000 | 16.62 | 5.96 | 44.37 | 3.69 |
658 | 703 | 0.812811 | TGTACGAGAGCTACGGCGAT | 60.813 | 55.000 | 16.62 | 0.00 | 44.37 | 4.58 |
659 | 704 | 1.426816 | CTGTACGAGAGCTACGGCGA | 61.427 | 60.000 | 16.62 | 0.00 | 44.37 | 5.54 |
660 | 705 | 1.011019 | CTGTACGAGAGCTACGGCG | 60.011 | 63.158 | 4.80 | 4.80 | 44.37 | 6.46 |
661 | 706 | 1.355916 | CCTGTACGAGAGCTACGGC | 59.644 | 63.158 | 15.34 | 9.22 | 39.06 | 5.68 |
662 | 707 | 1.096386 | AGCCTGTACGAGAGCTACGG | 61.096 | 60.000 | 15.34 | 2.03 | 32.73 | 4.02 |
663 | 708 | 0.305313 | GAGCCTGTACGAGAGCTACG | 59.695 | 60.000 | 10.54 | 10.54 | 35.23 | 3.51 |
664 | 709 | 0.305313 | CGAGCCTGTACGAGAGCTAC | 59.695 | 60.000 | 0.00 | 0.00 | 35.23 | 3.58 |
665 | 710 | 0.107800 | ACGAGCCTGTACGAGAGCTA | 60.108 | 55.000 | 0.00 | 0.00 | 35.23 | 3.32 |
666 | 711 | 0.961358 | AACGAGCCTGTACGAGAGCT | 60.961 | 55.000 | 0.00 | 0.00 | 38.56 | 4.09 |
667 | 712 | 0.523757 | GAACGAGCCTGTACGAGAGC | 60.524 | 60.000 | 0.00 | 0.00 | 0.00 | 4.09 |
668 | 713 | 0.099082 | GGAACGAGCCTGTACGAGAG | 59.901 | 60.000 | 0.00 | 0.00 | 0.00 | 3.20 |
669 | 714 | 0.607217 | TGGAACGAGCCTGTACGAGA | 60.607 | 55.000 | 0.00 | 0.00 | 0.00 | 4.04 |
670 | 715 | 0.456312 | GTGGAACGAGCCTGTACGAG | 60.456 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 |
671 | 716 | 1.582968 | GTGGAACGAGCCTGTACGA | 59.417 | 57.895 | 0.00 | 0.00 | 0.00 | 3.43 |
672 | 717 | 1.445582 | GGTGGAACGAGCCTGTACG | 60.446 | 63.158 | 0.00 | 0.00 | 38.12 | 3.67 |
673 | 718 | 0.034337 | TTGGTGGAACGAGCCTGTAC | 59.966 | 55.000 | 0.00 | 0.00 | 38.12 | 2.90 |
674 | 719 | 0.320374 | CTTGGTGGAACGAGCCTGTA | 59.680 | 55.000 | 0.00 | 0.00 | 38.12 | 2.74 |
675 | 720 | 1.071471 | CTTGGTGGAACGAGCCTGT | 59.929 | 57.895 | 0.00 | 0.00 | 38.12 | 4.00 |
676 | 721 | 2.328099 | GCTTGGTGGAACGAGCCTG | 61.328 | 63.158 | 0.00 | 0.00 | 39.74 | 4.85 |
677 | 722 | 2.032681 | GCTTGGTGGAACGAGCCT | 59.967 | 61.111 | 0.00 | 0.00 | 39.74 | 4.58 |
678 | 723 | 3.423154 | CGCTTGGTGGAACGAGCC | 61.423 | 66.667 | 0.00 | 0.00 | 41.73 | 4.70 |
679 | 724 | 4.090057 | GCGCTTGGTGGAACGAGC | 62.090 | 66.667 | 0.00 | 0.00 | 41.45 | 5.03 |
680 | 725 | 3.423154 | GGCGCTTGGTGGAACGAG | 61.423 | 66.667 | 7.64 | 0.00 | 38.12 | 4.18 |
698 | 743 | 4.681978 | AGTTGACGAGGGCACGGC | 62.682 | 66.667 | 8.04 | 5.37 | 42.12 | 5.68 |
699 | 744 | 2.432628 | GAGTTGACGAGGGCACGG | 60.433 | 66.667 | 8.04 | 0.00 | 37.61 | 4.94 |
700 | 745 | 2.432628 | GGAGTTGACGAGGGCACG | 60.433 | 66.667 | 0.00 | 2.09 | 39.31 | 5.34 |
701 | 746 | 2.432628 | CGGAGTTGACGAGGGCAC | 60.433 | 66.667 | 0.00 | 0.00 | 0.00 | 5.01 |
702 | 747 | 4.373116 | GCGGAGTTGACGAGGGCA | 62.373 | 66.667 | 0.00 | 0.00 | 0.00 | 5.36 |
704 | 749 | 4.796231 | CGGCGGAGTTGACGAGGG | 62.796 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
804 | 849 | 3.479269 | GACTTTGACGAGGGCGCG | 61.479 | 66.667 | 0.00 | 0.00 | 42.48 | 6.86 |
805 | 850 | 3.119096 | GGACTTTGACGAGGGCGC | 61.119 | 66.667 | 0.00 | 0.00 | 42.48 | 6.53 |
806 | 851 | 2.809601 | CGGACTTTGACGAGGGCG | 60.810 | 66.667 | 0.00 | 0.00 | 44.79 | 6.13 |
807 | 852 | 3.119096 | GCGGACTTTGACGAGGGC | 61.119 | 66.667 | 0.00 | 0.00 | 0.00 | 5.19 |
808 | 853 | 2.434359 | GGCGGACTTTGACGAGGG | 60.434 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
809 | 854 | 2.809601 | CGGCGGACTTTGACGAGG | 60.810 | 66.667 | 0.00 | 0.00 | 0.00 | 4.63 |
810 | 855 | 3.479269 | GCGGCGGACTTTGACGAG | 61.479 | 66.667 | 9.78 | 0.00 | 0.00 | 4.18 |
878 | 923 | 3.562779 | TTCACGGGCGAACGAGGAC | 62.563 | 63.158 | 6.19 | 0.00 | 37.61 | 3.85 |
879 | 924 | 3.296836 | TTCACGGGCGAACGAGGA | 61.297 | 61.111 | 6.19 | 1.13 | 37.61 | 3.71 |
882 | 927 | 3.851845 | CTGGTTCACGGGCGAACGA | 62.852 | 63.158 | 6.19 | 4.51 | 45.12 | 3.85 |
883 | 928 | 3.411351 | CTGGTTCACGGGCGAACG | 61.411 | 66.667 | 8.07 | 0.00 | 45.12 | 3.95 |
884 | 929 | 1.890510 | AACTGGTTCACGGGCGAAC | 60.891 | 57.895 | 6.19 | 6.19 | 43.75 | 3.95 |
885 | 930 | 1.890041 | CAACTGGTTCACGGGCGAA | 60.890 | 57.895 | 0.00 | 0.00 | 0.00 | 4.70 |
886 | 931 | 2.280524 | CAACTGGTTCACGGGCGA | 60.281 | 61.111 | 0.00 | 0.00 | 0.00 | 5.54 |
887 | 932 | 2.280524 | TCAACTGGTTCACGGGCG | 60.281 | 61.111 | 0.00 | 0.00 | 0.00 | 6.13 |
888 | 933 | 0.951040 | CTCTCAACTGGTTCACGGGC | 60.951 | 60.000 | 0.00 | 0.00 | 0.00 | 6.13 |
889 | 934 | 0.320771 | CCTCTCAACTGGTTCACGGG | 60.321 | 60.000 | 0.00 | 0.00 | 0.00 | 5.28 |
890 | 935 | 0.320771 | CCCTCTCAACTGGTTCACGG | 60.321 | 60.000 | 0.00 | 0.00 | 0.00 | 4.94 |
897 | 942 | 1.673665 | GTGCTGCCCTCTCAACTGG | 60.674 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
898 | 943 | 0.250640 | AAGTGCTGCCCTCTCAACTG | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
900 | 945 | 0.957888 | GGAAGTGCTGCCCTCTCAAC | 60.958 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
912 | 957 | 4.516698 | TCTCAATCAGACAAAAGGAAGTGC | 59.483 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
923 | 968 | 3.196469 | CCTGGCTACTTCTCAATCAGACA | 59.804 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
1495 | 1544 | 0.033405 | TGGTAGTCGAAGGAGGGGAG | 60.033 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1569 | 1618 | 2.031258 | TCGCTCTCGTCTTCTCATCT | 57.969 | 50.000 | 0.00 | 0.00 | 36.96 | 2.90 |
1824 | 1873 | 3.185299 | ATTGACGTCGGCACCCCAA | 62.185 | 57.895 | 11.62 | 0.00 | 0.00 | 4.12 |
1911 | 1960 | 2.734079 | GCTCTCAAGAAACAGTTCCGAG | 59.266 | 50.000 | 0.00 | 0.00 | 36.09 | 4.63 |
2233 | 2304 | 2.711311 | CATGCGCTTGGTCCGATG | 59.289 | 61.111 | 15.12 | 0.45 | 0.00 | 3.84 |
2309 | 2380 | 1.022982 | CGCTTCTGCAGATCCAGCAA | 61.023 | 55.000 | 29.13 | 10.12 | 42.17 | 3.91 |
2584 | 2776 | 3.627395 | TCCCAGTCAATACCATCACAC | 57.373 | 47.619 | 0.00 | 0.00 | 0.00 | 3.82 |
2731 | 3073 | 3.118884 | TCACCGTAATAAGTGGAGAAGGC | 60.119 | 47.826 | 0.00 | 0.00 | 34.67 | 4.35 |
2770 | 3112 | 2.223340 | GCCTTCGTCCATGCAATAAGTG | 60.223 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2780 | 3122 | 1.079127 | CAACTCCGCCTTCGTCCAT | 60.079 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
2806 | 3148 | 8.677300 | CATGCAACTAACTTGGTCATATACTTT | 58.323 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
2807 | 3149 | 7.829211 | ACATGCAACTAACTTGGTCATATACTT | 59.171 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
2835 | 3177 | 9.535170 | TTCTTATCCAATTATACACCCAACAAA | 57.465 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
2903 | 3245 | 7.584122 | TCCTGAGTATATGACCAAGTTAGAC | 57.416 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2929 | 3271 | 2.607750 | TGGAGGAAGAAGGCGGCT | 60.608 | 61.111 | 5.25 | 5.25 | 0.00 | 5.52 |
2963 | 3305 | 1.338674 | CGTCACCTTCACATTGGCCTA | 60.339 | 52.381 | 3.32 | 0.00 | 0.00 | 3.93 |
3028 | 3372 | 2.484770 | GGTGGATCTAAACCAGCGCATA | 60.485 | 50.000 | 11.47 | 0.00 | 44.02 | 3.14 |
3037 | 3381 | 4.515567 | GGAATGAATCGGGTGGATCTAAAC | 59.484 | 45.833 | 0.00 | 0.00 | 33.02 | 2.01 |
3053 | 3397 | 5.096443 | ACCTTGCAAAAACTTGGAATGAA | 57.904 | 34.783 | 0.00 | 0.00 | 31.96 | 2.57 |
3283 | 4251 | 6.317857 | GCTCAAAGCTAACAGATCGAAAATT | 58.682 | 36.000 | 0.00 | 0.00 | 38.45 | 1.82 |
3296 | 4264 | 4.207165 | ACAAGTCAAAGGCTCAAAGCTAA | 58.793 | 39.130 | 0.00 | 0.00 | 41.99 | 3.09 |
3393 | 4393 | 0.981183 | AGCCGACCTGAACAATACCA | 59.019 | 50.000 | 0.00 | 0.00 | 0.00 | 3.25 |
3489 | 4497 | 9.959749 | TGGTCATCACTTTGAAAAATTAAGTAC | 57.040 | 29.630 | 0.00 | 0.00 | 31.30 | 2.73 |
3595 | 4603 | 4.184629 | CAAGTAATTCGGAACAGAGGGAG | 58.815 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
3596 | 4604 | 3.581332 | ACAAGTAATTCGGAACAGAGGGA | 59.419 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
3597 | 4605 | 3.933332 | GACAAGTAATTCGGAACAGAGGG | 59.067 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
3598 | 4606 | 4.822026 | AGACAAGTAATTCGGAACAGAGG | 58.178 | 43.478 | 0.00 | 0.00 | 0.00 | 3.69 |
3599 | 4607 | 4.559251 | CGAGACAAGTAATTCGGAACAGAG | 59.441 | 45.833 | 0.00 | 0.00 | 0.00 | 3.35 |
3600 | 4608 | 4.482386 | CGAGACAAGTAATTCGGAACAGA | 58.518 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
3601 | 4609 | 4.824848 | CGAGACAAGTAATTCGGAACAG | 57.175 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
3607 | 4615 | 5.769367 | TCCATATCCGAGACAAGTAATTCG | 58.231 | 41.667 | 0.00 | 0.00 | 0.00 | 3.34 |
3608 | 4616 | 7.155328 | ACATCCATATCCGAGACAAGTAATTC | 58.845 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
3609 | 4617 | 7.067496 | ACATCCATATCCGAGACAAGTAATT | 57.933 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
3610 | 4618 | 6.672266 | ACATCCATATCCGAGACAAGTAAT | 57.328 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
3611 | 4619 | 7.670140 | AGATACATCCATATCCGAGACAAGTAA | 59.330 | 37.037 | 0.00 | 0.00 | 32.76 | 2.24 |
3612 | 4620 | 7.175797 | AGATACATCCATATCCGAGACAAGTA | 58.824 | 38.462 | 0.00 | 0.00 | 32.76 | 2.24 |
3613 | 4621 | 6.013379 | AGATACATCCATATCCGAGACAAGT | 58.987 | 40.000 | 0.00 | 0.00 | 32.76 | 3.16 |
3614 | 4622 | 6.522625 | AGATACATCCATATCCGAGACAAG | 57.477 | 41.667 | 0.00 | 0.00 | 32.76 | 3.16 |
3615 | 4623 | 7.402862 | TCTAGATACATCCATATCCGAGACAA | 58.597 | 38.462 | 0.00 | 0.00 | 32.76 | 3.18 |
3616 | 4624 | 6.958767 | TCTAGATACATCCATATCCGAGACA | 58.041 | 40.000 | 0.00 | 0.00 | 32.76 | 3.41 |
3617 | 4625 | 7.554835 | AGTTCTAGATACATCCATATCCGAGAC | 59.445 | 40.741 | 0.00 | 0.00 | 32.76 | 3.36 |
3618 | 4626 | 7.634718 | AGTTCTAGATACATCCATATCCGAGA | 58.365 | 38.462 | 0.00 | 0.00 | 32.76 | 4.04 |
3619 | 4627 | 7.873719 | AGTTCTAGATACATCCATATCCGAG | 57.126 | 40.000 | 0.00 | 0.00 | 32.76 | 4.63 |
3620 | 4628 | 9.175312 | GTTAGTTCTAGATACATCCATATCCGA | 57.825 | 37.037 | 0.00 | 0.00 | 32.76 | 4.55 |
3621 | 4629 | 8.957466 | TGTTAGTTCTAGATACATCCATATCCG | 58.043 | 37.037 | 0.00 | 0.00 | 32.76 | 4.18 |
3648 | 4656 | 9.734984 | TCGTAGAAATGGATGTATCTAGATGTA | 57.265 | 33.333 | 15.79 | 4.44 | 0.00 | 2.29 |
3649 | 4657 | 8.516234 | GTCGTAGAAATGGATGTATCTAGATGT | 58.484 | 37.037 | 15.79 | 1.25 | 39.69 | 3.06 |
3650 | 4658 | 8.515414 | TGTCGTAGAAATGGATGTATCTAGATG | 58.485 | 37.037 | 15.79 | 0.00 | 39.69 | 2.90 |
3651 | 4659 | 8.637196 | TGTCGTAGAAATGGATGTATCTAGAT | 57.363 | 34.615 | 10.73 | 10.73 | 39.69 | 1.98 |
3652 | 4660 | 8.459911 | TTGTCGTAGAAATGGATGTATCTAGA | 57.540 | 34.615 | 0.00 | 0.00 | 39.69 | 2.43 |
3653 | 4661 | 8.353684 | ACTTGTCGTAGAAATGGATGTATCTAG | 58.646 | 37.037 | 0.00 | 0.00 | 39.69 | 2.43 |
3654 | 4662 | 8.234136 | ACTTGTCGTAGAAATGGATGTATCTA | 57.766 | 34.615 | 0.00 | 0.00 | 39.69 | 1.98 |
3655 | 4663 | 7.113658 | ACTTGTCGTAGAAATGGATGTATCT | 57.886 | 36.000 | 0.00 | 0.00 | 39.69 | 1.98 |
3656 | 4664 | 8.867112 | TTACTTGTCGTAGAAATGGATGTATC | 57.133 | 34.615 | 0.00 | 0.00 | 39.69 | 2.24 |
3657 | 4665 | 9.832445 | AATTACTTGTCGTAGAAATGGATGTAT | 57.168 | 29.630 | 0.00 | 0.00 | 39.69 | 2.29 |
3658 | 4666 | 9.309516 | GAATTACTTGTCGTAGAAATGGATGTA | 57.690 | 33.333 | 0.00 | 0.00 | 39.69 | 2.29 |
3659 | 4667 | 7.280205 | GGAATTACTTGTCGTAGAAATGGATGT | 59.720 | 37.037 | 0.00 | 0.00 | 39.69 | 3.06 |
3660 | 4668 | 7.516785 | CGGAATTACTTGTCGTAGAAATGGATG | 60.517 | 40.741 | 0.00 | 0.00 | 39.69 | 3.51 |
3661 | 4669 | 6.479001 | CGGAATTACTTGTCGTAGAAATGGAT | 59.521 | 38.462 | 0.00 | 0.00 | 39.69 | 3.41 |
3662 | 4670 | 5.808540 | CGGAATTACTTGTCGTAGAAATGGA | 59.191 | 40.000 | 0.00 | 0.00 | 39.69 | 3.41 |
3663 | 4671 | 5.808540 | TCGGAATTACTTGTCGTAGAAATGG | 59.191 | 40.000 | 0.00 | 0.00 | 39.69 | 3.16 |
3664 | 4672 | 6.880822 | TCGGAATTACTTGTCGTAGAAATG | 57.119 | 37.500 | 0.00 | 0.00 | 39.69 | 2.32 |
3665 | 4673 | 6.034256 | CGTTCGGAATTACTTGTCGTAGAAAT | 59.966 | 38.462 | 0.00 | 0.00 | 39.69 | 2.17 |
3666 | 4674 | 5.343058 | CGTTCGGAATTACTTGTCGTAGAAA | 59.657 | 40.000 | 0.00 | 0.00 | 39.69 | 2.52 |
3667 | 4675 | 4.853196 | CGTTCGGAATTACTTGTCGTAGAA | 59.147 | 41.667 | 0.00 | 0.00 | 39.69 | 2.10 |
3668 | 4676 | 4.406069 | CGTTCGGAATTACTTGTCGTAGA | 58.594 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
3669 | 4677 | 3.545078 | CCGTTCGGAATTACTTGTCGTAG | 59.455 | 47.826 | 5.19 | 0.00 | 0.00 | 3.51 |
3670 | 4678 | 3.190327 | TCCGTTCGGAATTACTTGTCGTA | 59.810 | 43.478 | 11.66 | 0.00 | 0.00 | 3.43 |
3671 | 4679 | 2.030007 | TCCGTTCGGAATTACTTGTCGT | 60.030 | 45.455 | 11.66 | 0.00 | 0.00 | 4.34 |
3672 | 4680 | 2.597305 | CTCCGTTCGGAATTACTTGTCG | 59.403 | 50.000 | 14.79 | 0.00 | 33.41 | 4.35 |
3673 | 4681 | 2.928116 | CCTCCGTTCGGAATTACTTGTC | 59.072 | 50.000 | 14.79 | 0.00 | 33.41 | 3.18 |
3674 | 4682 | 2.354403 | CCCTCCGTTCGGAATTACTTGT | 60.354 | 50.000 | 14.79 | 0.00 | 33.41 | 3.16 |
3675 | 4683 | 2.093869 | TCCCTCCGTTCGGAATTACTTG | 60.094 | 50.000 | 14.79 | 1.97 | 33.41 | 3.16 |
3676 | 4684 | 2.167900 | CTCCCTCCGTTCGGAATTACTT | 59.832 | 50.000 | 14.79 | 0.00 | 33.41 | 2.24 |
3677 | 4685 | 1.755380 | CTCCCTCCGTTCGGAATTACT | 59.245 | 52.381 | 14.79 | 0.00 | 33.41 | 2.24 |
3678 | 4686 | 1.479730 | ACTCCCTCCGTTCGGAATTAC | 59.520 | 52.381 | 14.79 | 0.00 | 33.41 | 1.89 |
3679 | 4687 | 1.856629 | ACTCCCTCCGTTCGGAATTA | 58.143 | 50.000 | 14.79 | 2.82 | 33.41 | 1.40 |
3680 | 4688 | 1.755380 | CTACTCCCTCCGTTCGGAATT | 59.245 | 52.381 | 14.79 | 0.00 | 33.41 | 2.17 |
3681 | 4689 | 1.341778 | ACTACTCCCTCCGTTCGGAAT | 60.342 | 52.381 | 14.79 | 2.09 | 33.41 | 3.01 |
3682 | 4690 | 0.038744 | ACTACTCCCTCCGTTCGGAA | 59.961 | 55.000 | 14.79 | 0.04 | 33.41 | 4.30 |
3683 | 4691 | 0.038744 | AACTACTCCCTCCGTTCGGA | 59.961 | 55.000 | 13.34 | 13.34 | 0.00 | 4.55 |
3684 | 4692 | 0.893447 | AAACTACTCCCTCCGTTCGG | 59.107 | 55.000 | 4.74 | 4.74 | 0.00 | 4.30 |
3685 | 4693 | 1.542915 | TGAAACTACTCCCTCCGTTCG | 59.457 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
3686 | 4694 | 3.243975 | TGTTGAAACTACTCCCTCCGTTC | 60.244 | 47.826 | 0.00 | 0.00 | 0.00 | 3.95 |
3687 | 4695 | 2.701951 | TGTTGAAACTACTCCCTCCGTT | 59.298 | 45.455 | 0.00 | 0.00 | 0.00 | 4.44 |
3688 | 4696 | 2.322658 | TGTTGAAACTACTCCCTCCGT | 58.677 | 47.619 | 0.00 | 0.00 | 0.00 | 4.69 |
3689 | 4697 | 3.244112 | ACTTGTTGAAACTACTCCCTCCG | 60.244 | 47.826 | 0.00 | 0.00 | 0.00 | 4.63 |
3690 | 4698 | 4.065789 | CACTTGTTGAAACTACTCCCTCC | 58.934 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
3691 | 4699 | 4.957296 | TCACTTGTTGAAACTACTCCCTC | 58.043 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
3692 | 4700 | 5.367945 | TTCACTTGTTGAAACTACTCCCT | 57.632 | 39.130 | 0.00 | 0.00 | 41.51 | 4.20 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.