Multiple sequence alignment - TraesCS5B01G209600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G209600 chr5B 100.000 4231 0 0 1 4231 379449969 379445739 0.000000e+00 7814.0
1 TraesCS5B01G209600 chr5B 97.778 90 2 0 2552 2641 45261633 45261722 5.660000e-34 156.0
2 TraesCS5B01G209600 chr5B 97.802 91 1 1 2550 2639 526271481 526271391 5.660000e-34 156.0
3 TraesCS5B01G209600 chr5B 94.059 101 5 1 2541 2640 678507279 678507379 7.330000e-33 152.0
4 TraesCS5B01G209600 chr5A 91.119 1734 102 20 844 2555 429748367 429750070 0.000000e+00 2302.0
5 TraesCS5B01G209600 chr5A 92.989 870 32 9 1 856 429733735 429734589 0.000000e+00 1242.0
6 TraesCS5B01G209600 chr5A 92.908 564 25 5 3017 3566 429750522 429751084 0.000000e+00 806.0
7 TraesCS5B01G209600 chr5A 88.714 381 24 7 2637 3012 429750068 429750434 8.340000e-122 448.0
8 TraesCS5B01G209600 chr5A 84.286 280 26 8 1805 2068 353162779 353162502 1.510000e-64 257.0
9 TraesCS5B01G209600 chr5A 93.373 166 8 1 3678 3840 429751804 429751969 4.230000e-60 243.0
10 TraesCS5B01G209600 chr5A 97.170 106 1 2 3580 3683 123977717 123977612 1.210000e-40 178.0
11 TraesCS5B01G209600 chr5A 92.523 107 8 0 3837 3943 429752134 429752240 2.040000e-33 154.0
12 TraesCS5B01G209600 chr5A 96.970 66 2 0 4090 4155 429752357 429752422 1.240000e-20 111.0
13 TraesCS5B01G209600 chr5A 94.872 39 2 0 3953 3991 429752281 429752319 1.270000e-05 62.1
14 TraesCS5B01G209600 chr5D 92.412 1476 51 15 81 1508 326746386 326744924 0.000000e+00 2049.0
15 TraesCS5B01G209600 chr5D 91.517 1061 69 8 1510 2555 326742998 326741944 0.000000e+00 1441.0
16 TraesCS5B01G209600 chr5D 93.348 932 50 9 2637 3566 326741946 326741025 0.000000e+00 1367.0
17 TraesCS5B01G209600 chr5D 85.116 430 30 19 3678 4075 326740561 326740134 3.940000e-110 409.0
18 TraesCS5B01G209600 chr5D 96.970 66 2 0 4090 4155 326740146 326740081 1.240000e-20 111.0
19 TraesCS5B01G209600 chr7B 82.709 561 76 15 1665 2218 640936533 640935987 2.960000e-131 479.0
20 TraesCS5B01G209600 chr7B 92.308 104 7 1 2539 2642 744049534 744049432 3.410000e-31 147.0
21 TraesCS5B01G209600 chr1A 82.469 559 74 15 1669 2218 74095114 74094571 6.410000e-128 468.0
22 TraesCS5B01G209600 chr4A 81.947 565 76 19 1665 2218 628890441 628889892 4.990000e-124 455.0
23 TraesCS5B01G209600 chr7A 80.214 561 82 18 1665 2218 644529630 644530168 1.100000e-105 394.0
24 TraesCS5B01G209600 chr7A 88.272 162 10 7 1805 1958 211219331 211219171 7.220000e-43 185.0
25 TraesCS5B01G209600 chr7A 86.127 173 15 7 1805 1969 261401364 261401535 1.210000e-40 178.0
26 TraesCS5B01G209600 chr7A 94.737 95 5 0 2546 2640 435835171 435835265 9.480000e-32 148.0
27 TraesCS5B01G209600 chr1B 86.364 330 37 4 1665 1988 4553352 4553025 1.870000e-93 353.0
28 TraesCS5B01G209600 chr4B 82.639 288 31 10 1807 2077 606307720 606307435 1.970000e-58 237.0
29 TraesCS5B01G209600 chr4B 93.939 99 6 0 2544 2642 643626713 643626615 2.640000e-32 150.0
30 TraesCS5B01G209600 chr3A 88.889 162 9 6 1805 1958 57475715 57475875 1.550000e-44 191.0
31 TraesCS5B01G209600 chr3D 97.170 106 1 2 3580 3683 175123314 175123209 1.210000e-40 178.0
32 TraesCS5B01G209600 chr2D 97.143 105 2 1 3580 3683 452992995 452992891 4.350000e-40 176.0
33 TraesCS5B01G209600 chr2D 94.286 105 5 1 2545 2649 566134770 566134667 4.380000e-35 159.0
34 TraesCS5B01G209600 chr6D 96.226 106 2 2 3580 3683 299468103 299467998 5.620000e-39 172.0
35 TraesCS5B01G209600 chr4D 96.226 106 2 2 3580 3683 223170625 223170520 5.620000e-39 172.0
36 TraesCS5B01G209600 chr4D 96.226 106 2 2 3580 3683 307014763 307014658 5.620000e-39 172.0
37 TraesCS5B01G209600 chr4D 96.226 106 2 2 3580 3683 342243087 342243192 5.620000e-39 172.0
38 TraesCS5B01G209600 chr4D 96.226 106 2 2 3580 3683 408243121 408243226 5.620000e-39 172.0
39 TraesCS5B01G209600 chr4D 96.262 107 1 2 3580 3683 447190439 447190545 5.620000e-39 172.0
40 TraesCS5B01G209600 chr3B 97.778 90 2 0 2552 2641 793269114 793269203 5.660000e-34 156.0
41 TraesCS5B01G209600 chr2B 95.789 95 2 2 2554 2648 297438939 297439031 7.330000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G209600 chr5B 379445739 379449969 4230 True 7814.000000 7814 100.000000 1 4231 1 chr5B.!!$R1 4230
1 TraesCS5B01G209600 chr5A 429733735 429734589 854 False 1242.000000 1242 92.989000 1 856 1 chr5A.!!$F1 855
2 TraesCS5B01G209600 chr5A 429748367 429752422 4055 False 589.442857 2302 92.925571 844 4155 7 chr5A.!!$F2 3311
3 TraesCS5B01G209600 chr5D 326740081 326746386 6305 True 1075.400000 2049 91.872600 81 4155 5 chr5D.!!$R1 4074
4 TraesCS5B01G209600 chr7B 640935987 640936533 546 True 479.000000 479 82.709000 1665 2218 1 chr7B.!!$R1 553
5 TraesCS5B01G209600 chr1A 74094571 74095114 543 True 468.000000 468 82.469000 1669 2218 1 chr1A.!!$R1 549
6 TraesCS5B01G209600 chr4A 628889892 628890441 549 True 455.000000 455 81.947000 1665 2218 1 chr4A.!!$R1 553
7 TraesCS5B01G209600 chr7A 644529630 644530168 538 False 394.000000 394 80.214000 1665 2218 1 chr7A.!!$F3 553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
878 908 0.297820 GCTCGAAAGATAACGTGCCG 59.702 55.0 0.00 0.00 41.11 5.69 F
1318 1381 0.325602 CGGGGGTAAACTAACCAGCA 59.674 55.0 0.00 0.00 41.67 4.41 F
2225 4252 0.694196 TGGAAAACTAGAACCCGGGG 59.306 55.0 27.92 12.73 0.00 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2622 4654 0.038744 AACTACTCCCTCCGTTCCGA 59.961 55.0 0.0 0.0 0.0 4.55 R
2623 4655 0.893447 AAACTACTCCCTCCGTTCCG 59.107 55.0 0.0 0.0 0.0 4.30 R
4208 7170 0.108138 ACGACTGTAAGGATGCTGGC 60.108 55.0 0.0 0.0 39.3 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 73 7.072177 TCACAATTCAGAAATCGGTATGAAC 57.928 36.000 0.00 0.00 34.71 3.18
94 102 9.594478 CGTAATGGATAAATATAGGTATGCACA 57.406 33.333 0.00 0.00 31.86 4.57
367 375 0.452784 CGTTCGCAAAGTAAGCCTGC 60.453 55.000 0.00 0.00 0.00 4.85
383 391 2.347490 GCGCCTCCACCTCTTTGA 59.653 61.111 0.00 0.00 0.00 2.69
385 393 0.678048 GCGCCTCCACCTCTTTGATT 60.678 55.000 0.00 0.00 0.00 2.57
449 457 4.767255 GGTGAGTGCCCTGCCTCG 62.767 72.222 0.00 0.00 31.72 4.63
481 489 3.939592 GAGATTACTGAAACCGGAAAGGG 59.060 47.826 9.46 0.00 46.96 3.95
856 886 4.729227 AACAACACGGAAAAACCAGAAT 57.271 36.364 0.00 0.00 38.90 2.40
876 906 0.651031 GGGCTCGAAAGATAACGTGC 59.349 55.000 0.00 0.00 44.40 5.34
878 908 0.297820 GCTCGAAAGATAACGTGCCG 59.702 55.000 0.00 0.00 41.11 5.69
879 909 1.904144 CTCGAAAGATAACGTGCCGA 58.096 50.000 0.00 0.00 40.84 5.54
881 911 1.987770 TCGAAAGATAACGTGCCGAAC 59.012 47.619 0.00 0.00 33.31 3.95
882 912 1.990563 CGAAAGATAACGTGCCGAACT 59.009 47.619 0.00 0.00 0.00 3.01
883 913 2.222508 CGAAAGATAACGTGCCGAACTG 60.223 50.000 0.00 0.00 0.00 3.16
884 914 2.450609 AAGATAACGTGCCGAACTGT 57.549 45.000 0.00 0.00 0.00 3.55
885 915 3.581024 AAGATAACGTGCCGAACTGTA 57.419 42.857 0.00 0.00 0.00 2.74
886 916 3.146618 AGATAACGTGCCGAACTGTAG 57.853 47.619 0.00 0.00 0.00 2.74
940 973 1.137872 CATCCAAGACGGGGAAGAGAG 59.862 57.143 0.00 0.00 38.09 3.20
944 977 1.474879 CAAGACGGGGAAGAGAGAGAC 59.525 57.143 0.00 0.00 0.00 3.36
1008 1068 2.514824 GAGAAGACCATGGCCGCC 60.515 66.667 13.04 1.04 0.00 6.13
1033 1093 4.838486 GCGACGAGCTGGAGACGG 62.838 72.222 1.44 0.00 44.04 4.79
1034 1094 3.432588 CGACGAGCTGGAGACGGT 61.433 66.667 1.44 0.00 39.64 4.83
1035 1095 2.486042 GACGAGCTGGAGACGGTC 59.514 66.667 1.44 0.00 39.64 4.79
1124 1187 2.606519 TAACGCCCCCAGAGCACT 60.607 61.111 0.00 0.00 0.00 4.40
1147 1210 1.546323 CCTTCTTCTTGCCTTGCTCCA 60.546 52.381 0.00 0.00 0.00 3.86
1318 1381 0.325602 CGGGGGTAAACTAACCAGCA 59.674 55.000 0.00 0.00 41.67 4.41
1334 1397 0.912486 AGCAACACATACCCTCCTCC 59.088 55.000 0.00 0.00 0.00 4.30
1360 1426 3.119291 CGTCCTGATTGTCATGCTAGAC 58.881 50.000 0.00 2.66 38.99 2.59
1411 1477 5.197451 TGTGTTGTTGTTCCTAGGACATTT 58.803 37.500 12.22 0.00 0.00 2.32
1429 1495 9.533831 AGGACATTTTATTTCATACTTTCCACT 57.466 29.630 0.00 0.00 0.00 4.00
1472 1538 4.794762 CACTTTTGGAATCACATGCATACG 59.205 41.667 0.00 0.00 0.00 3.06
1483 1549 2.872245 ACATGCATACGTCTTATGTGCC 59.128 45.455 0.00 0.00 40.02 5.01
1519 3510 7.936847 CCATTAGGACAGTTATAAATGGCTGTA 59.063 37.037 17.66 7.78 41.59 2.74
1522 3513 6.223852 AGGACAGTTATAAATGGCTGTATCG 58.776 40.000 17.66 0.00 41.59 2.92
1542 3534 3.505680 TCGCCAAGTTCTTATTTGTGCAT 59.494 39.130 0.00 0.00 0.00 3.96
1876 3887 7.708998 TGACACACCCTTATTTTCTGTAAAAC 58.291 34.615 0.00 0.00 37.41 2.43
1877 3888 7.339721 TGACACACCCTTATTTTCTGTAAAACA 59.660 33.333 0.00 0.00 37.41 2.83
1967 3978 5.587443 TCTGTCACTATGAAAGCATGGATTG 59.413 40.000 0.00 0.00 36.58 2.67
2017 4028 4.747108 CCTATTGCTCGAAAGTATGAGGTG 59.253 45.833 0.00 0.00 32.78 4.00
2065 4076 9.088987 TCCTTAACTTGCTTCTCCAATAAAATT 57.911 29.630 0.00 0.00 0.00 1.82
2134 4152 7.686438 TGTAGCATTGTCAAAACATATCTGT 57.314 32.000 0.00 0.00 34.73 3.41
2149 4167 6.418101 ACATATCTGTAGCCAGTTTGAACAT 58.582 36.000 0.00 0.00 39.82 2.71
2150 4168 7.564793 ACATATCTGTAGCCAGTTTGAACATA 58.435 34.615 0.00 0.00 39.82 2.29
2151 4169 7.712639 ACATATCTGTAGCCAGTTTGAACATAG 59.287 37.037 0.00 0.00 39.82 2.23
2182 4200 7.572523 TCAATTTCTGTCAAGTTCAAGACAT 57.427 32.000 0.00 0.00 43.18 3.06
2221 4248 3.304458 CGTTGCTTGGAAAACTAGAACCC 60.304 47.826 0.00 0.00 0.00 4.11
2225 4252 0.694196 TGGAAAACTAGAACCCGGGG 59.306 55.000 27.92 12.73 0.00 5.73
2236 4263 3.961009 CCCGGGGGTTACTACCTC 58.039 66.667 14.71 0.00 44.92 3.85
2360 4387 7.781056 TGTATAGATTCTGTGTGTAGCAATGA 58.219 34.615 0.00 0.00 0.00 2.57
2391 4418 8.082242 ACAGTTTCCAAAGTAATTAGCAATGTC 58.918 33.333 0.00 0.00 0.00 3.06
2417 4444 7.182761 CGATTTGGTGCTAGATTTCAGTTTAG 58.817 38.462 0.00 0.00 0.00 1.85
2520 4550 5.938125 ACAACAAGGTGATGTTAGGTATGTC 59.062 40.000 0.00 0.00 41.44 3.06
2540 4572 3.133721 GTCATCTATGCCCTTCAGTCTGT 59.866 47.826 0.00 0.00 0.00 3.41
2541 4573 3.133542 TCATCTATGCCCTTCAGTCTGTG 59.866 47.826 0.00 0.00 0.00 3.66
2552 4584 4.260907 CCTTCAGTCTGTGATGTTGTTGTG 60.261 45.833 0.00 0.00 34.17 3.33
2553 4585 3.872696 TCAGTCTGTGATGTTGTTGTGT 58.127 40.909 0.00 0.00 0.00 3.72
2554 4586 5.017294 TCAGTCTGTGATGTTGTTGTGTA 57.983 39.130 0.00 0.00 0.00 2.90
2555 4587 4.808895 TCAGTCTGTGATGTTGTTGTGTAC 59.191 41.667 0.00 0.00 0.00 2.90
2556 4588 4.811024 CAGTCTGTGATGTTGTTGTGTACT 59.189 41.667 0.00 0.00 0.00 2.73
2557 4589 5.050490 AGTCTGTGATGTTGTTGTGTACTC 58.950 41.667 0.00 0.00 0.00 2.59
2558 4590 4.211374 GTCTGTGATGTTGTTGTGTACTCC 59.789 45.833 0.00 0.00 0.00 3.85
2559 4591 3.472652 TGTGATGTTGTTGTGTACTCCC 58.527 45.455 0.00 0.00 0.00 4.30
2560 4592 3.135712 TGTGATGTTGTTGTGTACTCCCT 59.864 43.478 0.00 0.00 0.00 4.20
2561 4593 3.746492 GTGATGTTGTTGTGTACTCCCTC 59.254 47.826 0.00 0.00 0.00 4.30
2562 4594 2.922740 TGTTGTTGTGTACTCCCTCC 57.077 50.000 0.00 0.00 0.00 4.30
2563 4595 1.069513 TGTTGTTGTGTACTCCCTCCG 59.930 52.381 0.00 0.00 0.00 4.63
2564 4596 1.069668 GTTGTTGTGTACTCCCTCCGT 59.930 52.381 0.00 0.00 0.00 4.69
2565 4597 1.416243 TGTTGTGTACTCCCTCCGTT 58.584 50.000 0.00 0.00 0.00 4.44
2566 4598 1.342174 TGTTGTGTACTCCCTCCGTTC 59.658 52.381 0.00 0.00 0.00 3.95
2567 4599 1.617357 GTTGTGTACTCCCTCCGTTCT 59.383 52.381 0.00 0.00 0.00 3.01
2568 4600 1.254026 TGTGTACTCCCTCCGTTCTG 58.746 55.000 0.00 0.00 0.00 3.02
2569 4601 1.202964 TGTGTACTCCCTCCGTTCTGA 60.203 52.381 0.00 0.00 0.00 3.27
2570 4602 2.100989 GTGTACTCCCTCCGTTCTGAT 58.899 52.381 0.00 0.00 0.00 2.90
2571 4603 2.496470 GTGTACTCCCTCCGTTCTGATT 59.504 50.000 0.00 0.00 0.00 2.57
2572 4604 3.056035 GTGTACTCCCTCCGTTCTGATTT 60.056 47.826 0.00 0.00 0.00 2.17
2573 4605 4.159135 GTGTACTCCCTCCGTTCTGATTTA 59.841 45.833 0.00 0.00 0.00 1.40
2574 4606 3.889520 ACTCCCTCCGTTCTGATTTAC 57.110 47.619 0.00 0.00 0.00 2.01
2575 4607 3.442076 ACTCCCTCCGTTCTGATTTACT 58.558 45.455 0.00 0.00 0.00 2.24
2576 4608 3.447944 ACTCCCTCCGTTCTGATTTACTC 59.552 47.826 0.00 0.00 0.00 2.59
2577 4609 2.426024 TCCCTCCGTTCTGATTTACTCG 59.574 50.000 0.00 0.00 0.00 4.18
2578 4610 2.165845 CCCTCCGTTCTGATTTACTCGT 59.834 50.000 0.00 0.00 0.00 4.18
2579 4611 3.368116 CCCTCCGTTCTGATTTACTCGTT 60.368 47.826 0.00 0.00 0.00 3.85
2580 4612 3.612860 CCTCCGTTCTGATTTACTCGTTG 59.387 47.826 0.00 0.00 0.00 4.10
2581 4613 4.235360 CTCCGTTCTGATTTACTCGTTGT 58.765 43.478 0.00 0.00 0.00 3.32
2582 4614 3.985279 TCCGTTCTGATTTACTCGTTGTG 59.015 43.478 0.00 0.00 0.00 3.33
2583 4615 3.122948 CCGTTCTGATTTACTCGTTGTGG 59.877 47.826 0.00 0.00 0.00 4.17
2584 4616 3.739300 CGTTCTGATTTACTCGTTGTGGT 59.261 43.478 0.00 0.00 0.00 4.16
2585 4617 4.210537 CGTTCTGATTTACTCGTTGTGGTT 59.789 41.667 0.00 0.00 0.00 3.67
2586 4618 5.277154 CGTTCTGATTTACTCGTTGTGGTTT 60.277 40.000 0.00 0.00 0.00 3.27
2587 4619 6.492254 GTTCTGATTTACTCGTTGTGGTTTT 58.508 36.000 0.00 0.00 0.00 2.43
2588 4620 7.517101 CGTTCTGATTTACTCGTTGTGGTTTTA 60.517 37.037 0.00 0.00 0.00 1.52
2589 4621 7.416154 TCTGATTTACTCGTTGTGGTTTTAG 57.584 36.000 0.00 0.00 0.00 1.85
2590 4622 6.987992 TCTGATTTACTCGTTGTGGTTTTAGT 59.012 34.615 0.00 0.00 0.00 2.24
2591 4623 7.496591 TCTGATTTACTCGTTGTGGTTTTAGTT 59.503 33.333 0.00 0.00 0.00 2.24
2592 4624 7.632721 TGATTTACTCGTTGTGGTTTTAGTTC 58.367 34.615 0.00 0.00 0.00 3.01
2593 4625 6.981762 TTTACTCGTTGTGGTTTTAGTTCA 57.018 33.333 0.00 0.00 0.00 3.18
2594 4626 6.981762 TTACTCGTTGTGGTTTTAGTTCAA 57.018 33.333 0.00 0.00 0.00 2.69
2595 4627 5.883503 ACTCGTTGTGGTTTTAGTTCAAA 57.116 34.783 0.00 0.00 0.00 2.69
2596 4628 6.445357 ACTCGTTGTGGTTTTAGTTCAAAT 57.555 33.333 0.00 0.00 0.00 2.32
2597 4629 6.859017 ACTCGTTGTGGTTTTAGTTCAAATT 58.141 32.000 0.00 0.00 0.00 1.82
2598 4630 7.317390 ACTCGTTGTGGTTTTAGTTCAAATTT 58.683 30.769 0.00 0.00 0.00 1.82
2599 4631 7.274686 ACTCGTTGTGGTTTTAGTTCAAATTTG 59.725 33.333 12.15 12.15 0.00 2.32
2600 4632 7.313646 TCGTTGTGGTTTTAGTTCAAATTTGA 58.686 30.769 16.91 16.91 34.92 2.69
2601 4633 7.813148 TCGTTGTGGTTTTAGTTCAAATTTGAA 59.187 29.630 26.01 26.01 44.31 2.69
2614 4646 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
2615 4647 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
2616 4648 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
2617 4649 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
2618 4650 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
2619 4651 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
2620 4652 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
2621 4653 5.347342 TGAACTAAAACCACGACGAGTAAA 58.653 37.500 0.00 0.00 0.00 2.01
2622 4654 5.984926 TGAACTAAAACCACGACGAGTAAAT 59.015 36.000 0.00 0.00 0.00 1.40
2623 4655 6.144402 TGAACTAAAACCACGACGAGTAAATC 59.856 38.462 0.00 0.00 0.00 2.17
2703 4740 2.731451 CGACATAATGGTGGTCTATGCG 59.269 50.000 0.00 0.00 0.00 4.73
2705 4742 3.728845 ACATAATGGTGGTCTATGCGAC 58.271 45.455 0.00 0.00 42.07 5.19
2761 4798 2.851263 TGGTATTCTGCGGTTTCACT 57.149 45.000 0.00 0.00 0.00 3.41
2772 4809 3.252215 TGCGGTTTCACTTTGTTGGATAG 59.748 43.478 0.00 0.00 0.00 2.08
2778 4815 7.489160 GGTTTCACTTTGTTGGATAGAAGTTT 58.511 34.615 0.00 0.00 30.41 2.66
2779 4816 7.648112 GGTTTCACTTTGTTGGATAGAAGTTTC 59.352 37.037 0.00 0.00 30.41 2.78
2862 4902 4.072839 AGTTTAAAAGCTGCCTGGACTAC 58.927 43.478 0.00 0.00 0.00 2.73
2863 4903 4.072839 GTTTAAAAGCTGCCTGGACTACT 58.927 43.478 0.00 0.00 0.00 2.57
2864 4904 5.012768 AGTTTAAAAGCTGCCTGGACTACTA 59.987 40.000 0.00 0.00 0.00 1.82
2881 4921 9.209048 TGGACTACTATTAAAATCTGCTCCTTA 57.791 33.333 0.00 0.00 0.00 2.69
2956 4996 2.842457 AGTCGTGTTTTGGGTAGGAAC 58.158 47.619 0.00 0.00 0.00 3.62
3063 5187 8.530311 TGCTGATAAACAAAATTGTGGATATGT 58.470 29.630 0.00 0.00 41.31 2.29
3232 5356 0.451783 CGGGCAGGTCAATTGTAAGC 59.548 55.000 5.13 5.93 0.00 3.09
3246 5370 6.150976 TCAATTGTAAGCCCTTATCTGTGTTG 59.849 38.462 5.13 0.00 0.00 3.33
3264 5388 0.112995 TGCCAGGACTGCATTTTCCT 59.887 50.000 5.95 5.95 43.51 3.36
3399 5531 2.223845 AGCCGTTTTTGCATGCATTTTC 59.776 40.909 23.37 11.74 0.00 2.29
3422 5554 3.953775 AGCCACCCCTGGTTGTCG 61.954 66.667 0.00 0.00 40.17 4.35
3461 5593 6.208644 AGCAACATCACAACATAAACAGAAC 58.791 36.000 0.00 0.00 0.00 3.01
3477 5609 9.884636 ATAAACAGAACTTACATACATGTGCTA 57.115 29.630 9.11 0.00 41.89 3.49
3523 5660 8.474025 GGGAAGAGTTATCTCATGTATATCTGG 58.526 40.741 3.70 0.00 42.66 3.86
3550 5687 3.409026 AAGTCTTGAGCCGATTTGACT 57.591 42.857 0.00 0.00 36.49 3.41
3566 5703 6.237835 CGATTTGACTATGTACAAGAACGCAT 60.238 38.462 0.00 0.00 0.00 4.73
3567 5704 6.403333 TTTGACTATGTACAAGAACGCATC 57.597 37.500 0.00 0.00 0.00 3.91
3570 5707 5.105917 TGACTATGTACAAGAACGCATCTCA 60.106 40.000 0.00 0.00 37.42 3.27
3571 5708 5.907207 ACTATGTACAAGAACGCATCTCAT 58.093 37.500 0.00 0.00 37.42 2.90
3572 5709 5.750547 ACTATGTACAAGAACGCATCTCATG 59.249 40.000 0.00 0.00 37.42 3.07
3574 5711 4.176271 TGTACAAGAACGCATCTCATGAG 58.824 43.478 17.07 17.07 37.42 2.90
3576 5713 1.329906 CAAGAACGCATCTCATGAGCC 59.670 52.381 18.36 7.70 37.42 4.70
3579 5716 0.105593 AACGCATCTCATGAGCCGAT 59.894 50.000 26.00 17.03 33.01 4.18
3580 5717 0.105593 ACGCATCTCATGAGCCGATT 59.894 50.000 26.00 10.54 33.01 3.34
3581 5718 1.224075 CGCATCTCATGAGCCGATTT 58.776 50.000 18.36 0.00 0.00 2.17
3582 5719 1.600957 CGCATCTCATGAGCCGATTTT 59.399 47.619 18.36 0.00 0.00 1.82
3583 5720 2.802247 CGCATCTCATGAGCCGATTTTA 59.198 45.455 18.36 0.00 0.00 1.52
3584 5721 3.363378 CGCATCTCATGAGCCGATTTTAC 60.363 47.826 18.36 0.00 0.00 2.01
3585 5722 3.561310 GCATCTCATGAGCCGATTTTACA 59.439 43.478 18.36 0.00 0.00 2.41
3586 5723 4.553547 GCATCTCATGAGCCGATTTTACAC 60.554 45.833 18.36 0.00 0.00 2.90
3587 5724 4.200838 TCTCATGAGCCGATTTTACACA 57.799 40.909 18.36 0.00 0.00 3.72
3588 5725 4.769688 TCTCATGAGCCGATTTTACACAT 58.230 39.130 18.36 0.00 0.00 3.21
3591 5728 2.364632 TGAGCCGATTTTACACATGGG 58.635 47.619 0.00 0.00 0.00 4.00
3593 5730 3.214328 GAGCCGATTTTACACATGGGAT 58.786 45.455 0.00 0.00 0.00 3.85
3594 5731 3.631250 AGCCGATTTTACACATGGGATT 58.369 40.909 0.00 0.00 0.00 3.01
3595 5732 4.787551 AGCCGATTTTACACATGGGATTA 58.212 39.130 0.00 0.00 0.00 1.75
3596 5733 4.578928 AGCCGATTTTACACATGGGATTAC 59.421 41.667 0.00 0.00 0.00 1.89
3598 5735 5.277828 GCCGATTTTACACATGGGATTACTC 60.278 44.000 0.00 0.00 0.00 2.59
3599 5736 5.238650 CCGATTTTACACATGGGATTACTCC 59.761 44.000 0.00 0.00 41.26 3.85
3600 5737 6.055588 CGATTTTACACATGGGATTACTCCT 58.944 40.000 0.00 0.00 41.74 3.69
3602 5739 2.717639 ACACATGGGATTACTCCTGC 57.282 50.000 0.00 0.00 41.74 4.85
3604 5741 2.511218 ACACATGGGATTACTCCTGCAT 59.489 45.455 0.00 0.00 41.74 3.96
3605 5742 2.882761 CACATGGGATTACTCCTGCATG 59.117 50.000 13.41 13.41 42.45 4.06
3606 5743 2.158564 ACATGGGATTACTCCTGCATGG 60.159 50.000 17.08 0.00 41.71 3.66
3607 5744 0.846015 TGGGATTACTCCTGCATGGG 59.154 55.000 0.00 0.00 41.74 4.00
3609 5746 1.202818 GGGATTACTCCTGCATGGGTC 60.203 57.143 0.00 0.00 41.74 4.46
3611 5748 2.092429 GGATTACTCCTGCATGGGTCAA 60.092 50.000 0.00 0.00 38.65 3.18
3612 5749 3.435601 GGATTACTCCTGCATGGGTCAAT 60.436 47.826 0.00 0.00 38.65 2.57
3613 5750 3.281727 TTACTCCTGCATGGGTCAATC 57.718 47.619 0.00 0.00 36.20 2.67
3614 5751 0.994247 ACTCCTGCATGGGTCAATCA 59.006 50.000 0.00 0.00 36.20 2.57
3615 5752 1.340405 ACTCCTGCATGGGTCAATCAC 60.340 52.381 0.00 0.00 36.20 3.06
3654 5837 6.456447 AAAAATGCATCTTGATGTTTCGTG 57.544 33.333 0.00 0.00 0.00 4.35
3655 5838 2.617250 TGCATCTTGATGTTTCGTGC 57.383 45.000 11.61 0.00 0.00 5.34
3656 5839 1.878734 TGCATCTTGATGTTTCGTGCA 59.121 42.857 11.61 0.00 38.62 4.57
3657 5840 2.292845 TGCATCTTGATGTTTCGTGCAA 59.707 40.909 11.61 0.00 38.07 4.08
3658 5841 3.057386 TGCATCTTGATGTTTCGTGCAAT 60.057 39.130 11.61 0.00 38.07 3.56
3659 5842 3.302434 GCATCTTGATGTTTCGTGCAATG 59.698 43.478 11.61 0.00 0.00 2.82
3660 5843 2.932498 TCTTGATGTTTCGTGCAATGC 58.068 42.857 0.00 0.00 0.00 3.56
3661 5844 2.292845 TCTTGATGTTTCGTGCAATGCA 59.707 40.909 2.72 2.72 35.60 3.96
3671 5854 3.568000 TGCAATGCACGGGTATCTT 57.432 47.368 2.72 0.00 31.71 2.40
3672 5855 1.093972 TGCAATGCACGGGTATCTTG 58.906 50.000 2.72 0.00 31.71 3.02
3673 5856 0.248621 GCAATGCACGGGTATCTTGC 60.249 55.000 0.00 0.00 36.76 4.01
3674 5857 1.382522 CAATGCACGGGTATCTTGCT 58.617 50.000 0.00 0.00 37.16 3.91
3676 5859 2.533266 ATGCACGGGTATCTTGCTAG 57.467 50.000 0.00 0.00 37.16 3.42
3694 6449 4.332428 CTAGTCATGATCATGTCTGGCA 57.668 45.455 32.54 19.10 37.65 4.92
3738 6493 2.414994 ATGAGGTGTGGCATCTGAAG 57.585 50.000 0.00 0.00 0.00 3.02
3741 6496 0.617413 AGGTGTGGCATCTGAAGGAG 59.383 55.000 0.00 0.00 0.00 3.69
3743 6498 0.326264 GTGTGGCATCTGAAGGAGGT 59.674 55.000 0.00 0.00 0.00 3.85
3753 6511 5.163364 GCATCTGAAGGAGGTTATCTCTTGA 60.163 44.000 0.00 0.00 42.10 3.02
3888 6817 1.299850 TGTCTGTGTCCGAACTGCG 60.300 57.895 0.00 0.00 40.47 5.18
3917 6846 0.656259 TGGTATCTCGAGCGAGTTCG 59.344 55.000 18.17 2.95 42.49 3.95
3944 6873 1.001520 ACACTGGCAGCACGTATACAA 59.998 47.619 15.89 0.00 0.00 2.41
3946 6875 3.118920 ACACTGGCAGCACGTATACAATA 60.119 43.478 15.89 0.00 0.00 1.90
3949 6878 5.007626 CACTGGCAGCACGTATACAATATTT 59.992 40.000 15.89 0.00 0.00 1.40
4009 6970 9.925268 ACTTTTTAGTTTTTACACACATAGACG 57.075 29.630 0.00 0.00 0.00 4.18
4023 6985 6.590292 CACACATAGACGAAGATTACAAAGGT 59.410 38.462 0.00 0.00 0.00 3.50
4047 7009 6.919115 GTCATTACTCTCCCGATAAAAGAGAC 59.081 42.308 5.67 0.00 39.09 3.36
4060 7022 6.412362 CGATAAAAGAGACGAGACACATACTG 59.588 42.308 0.00 0.00 0.00 2.74
4062 7024 5.906113 AAAGAGACGAGACACATACTGAT 57.094 39.130 0.00 0.00 0.00 2.90
4063 7025 7.392494 AAAAGAGACGAGACACATACTGATA 57.608 36.000 0.00 0.00 0.00 2.15
4064 7026 7.575414 AAAGAGACGAGACACATACTGATAT 57.425 36.000 0.00 0.00 0.00 1.63
4065 7027 8.678593 AAAGAGACGAGACACATACTGATATA 57.321 34.615 0.00 0.00 0.00 0.86
4066 7028 7.899178 AGAGACGAGACACATACTGATATAG 57.101 40.000 0.00 0.00 0.00 1.31
4067 7029 7.672240 AGAGACGAGACACATACTGATATAGA 58.328 38.462 0.00 0.00 0.00 1.98
4068 7030 7.601130 AGAGACGAGACACATACTGATATAGAC 59.399 40.741 0.00 0.00 0.00 2.59
4069 7031 6.651643 AGACGAGACACATACTGATATAGACC 59.348 42.308 0.00 0.00 0.00 3.85
4070 7032 6.535540 ACGAGACACATACTGATATAGACCT 58.464 40.000 0.00 0.00 0.00 3.85
4071 7033 6.999272 ACGAGACACATACTGATATAGACCTT 59.001 38.462 0.00 0.00 0.00 3.50
4072 7034 7.041030 ACGAGACACATACTGATATAGACCTTG 60.041 40.741 0.00 0.00 0.00 3.61
4073 7035 7.041030 CGAGACACATACTGATATAGACCTTGT 60.041 40.741 0.00 0.00 0.00 3.16
4074 7036 8.540507 AGACACATACTGATATAGACCTTGTT 57.459 34.615 0.00 0.00 0.00 2.83
4075 7037 8.982723 AGACACATACTGATATAGACCTTGTTT 58.017 33.333 0.00 0.00 0.00 2.83
4076 7038 9.601217 GACACATACTGATATAGACCTTGTTTT 57.399 33.333 0.00 0.00 0.00 2.43
4077 7039 9.959721 ACACATACTGATATAGACCTTGTTTTT 57.040 29.630 0.00 0.00 0.00 1.94
4122 7084 7.078249 TGTTGTAGACCGGGTATAGTAGATA 57.922 40.000 6.32 0.00 0.00 1.98
4174 7136 5.806654 TTTTTCTTGATTGAAAGAGGGGG 57.193 39.130 0.00 0.00 37.48 5.40
4175 7137 2.514458 TCTTGATTGAAAGAGGGGGC 57.486 50.000 0.00 0.00 32.42 5.80
4176 7138 1.995542 TCTTGATTGAAAGAGGGGGCT 59.004 47.619 0.00 0.00 32.42 5.19
4177 7139 2.379907 TCTTGATTGAAAGAGGGGGCTT 59.620 45.455 0.00 0.00 32.42 4.35
4178 7140 2.514458 TGATTGAAAGAGGGGGCTTC 57.486 50.000 0.00 0.00 0.00 3.86
4179 7141 1.005924 TGATTGAAAGAGGGGGCTTCC 59.994 52.381 0.00 0.00 0.00 3.46
4189 7151 4.561452 GGGCTTCCCTCCGATTTC 57.439 61.111 0.00 0.00 41.34 2.17
4190 7152 1.915983 GGGCTTCCCTCCGATTTCT 59.084 57.895 0.00 0.00 41.34 2.52
4191 7153 0.256177 GGGCTTCCCTCCGATTTCTT 59.744 55.000 0.00 0.00 41.34 2.52
4192 7154 1.341089 GGGCTTCCCTCCGATTTCTTT 60.341 52.381 0.00 0.00 41.34 2.52
4193 7155 2.092592 GGGCTTCCCTCCGATTTCTTTA 60.093 50.000 0.00 0.00 41.34 1.85
4194 7156 2.943690 GGCTTCCCTCCGATTTCTTTAC 59.056 50.000 0.00 0.00 0.00 2.01
4195 7157 2.943690 GCTTCCCTCCGATTTCTTTACC 59.056 50.000 0.00 0.00 0.00 2.85
4196 7158 2.973694 TCCCTCCGATTTCTTTACCG 57.026 50.000 0.00 0.00 0.00 4.02
4197 7159 2.459644 TCCCTCCGATTTCTTTACCGA 58.540 47.619 0.00 0.00 0.00 4.69
4198 7160 2.833338 TCCCTCCGATTTCTTTACCGAA 59.167 45.455 0.00 0.00 0.00 4.30
4199 7161 3.261390 TCCCTCCGATTTCTTTACCGAAA 59.739 43.478 0.00 0.00 37.31 3.46
4200 7162 3.373130 CCCTCCGATTTCTTTACCGAAAC 59.627 47.826 0.00 0.00 35.88 2.78
4201 7163 3.373130 CCTCCGATTTCTTTACCGAAACC 59.627 47.826 0.00 0.00 35.88 3.27
4202 7164 4.251268 CTCCGATTTCTTTACCGAAACCT 58.749 43.478 0.00 0.00 35.88 3.50
4203 7165 5.404466 TCCGATTTCTTTACCGAAACCTA 57.596 39.130 0.00 0.00 35.88 3.08
4204 7166 5.792741 TCCGATTTCTTTACCGAAACCTAA 58.207 37.500 0.00 0.00 35.88 2.69
4205 7167 6.229733 TCCGATTTCTTTACCGAAACCTAAA 58.770 36.000 0.00 0.00 35.88 1.85
4206 7168 6.369615 TCCGATTTCTTTACCGAAACCTAAAG 59.630 38.462 0.00 0.00 35.88 1.85
4207 7169 6.369615 CCGATTTCTTTACCGAAACCTAAAGA 59.630 38.462 0.00 0.00 37.25 2.52
4208 7170 7.412672 CCGATTTCTTTACCGAAACCTAAAGAG 60.413 40.741 0.00 0.00 39.18 2.85
4209 7171 6.549912 TTTCTTTACCGAAACCTAAAGAGC 57.450 37.500 0.00 0.00 39.18 4.09
4210 7172 4.572909 TCTTTACCGAAACCTAAAGAGCC 58.427 43.478 0.00 0.00 35.15 4.70
4211 7173 4.040706 TCTTTACCGAAACCTAAAGAGCCA 59.959 41.667 0.00 0.00 35.15 4.75
4212 7174 2.474410 ACCGAAACCTAAAGAGCCAG 57.526 50.000 0.00 0.00 0.00 4.85
4213 7175 1.087501 CCGAAACCTAAAGAGCCAGC 58.912 55.000 0.00 0.00 0.00 4.85
4214 7176 1.610624 CCGAAACCTAAAGAGCCAGCA 60.611 52.381 0.00 0.00 0.00 4.41
4215 7177 2.359900 CGAAACCTAAAGAGCCAGCAT 58.640 47.619 0.00 0.00 0.00 3.79
4216 7178 2.352960 CGAAACCTAAAGAGCCAGCATC 59.647 50.000 0.00 0.00 0.00 3.91
4217 7179 2.426842 AACCTAAAGAGCCAGCATCC 57.573 50.000 0.00 0.00 0.00 3.51
4218 7180 1.589414 ACCTAAAGAGCCAGCATCCT 58.411 50.000 0.00 0.00 0.00 3.24
4219 7181 1.918957 ACCTAAAGAGCCAGCATCCTT 59.081 47.619 0.00 0.00 0.00 3.36
4220 7182 3.115390 ACCTAAAGAGCCAGCATCCTTA 58.885 45.455 0.00 0.00 0.00 2.69
4221 7183 3.118223 ACCTAAAGAGCCAGCATCCTTAC 60.118 47.826 0.00 0.00 0.00 2.34
4222 7184 3.118261 CCTAAAGAGCCAGCATCCTTACA 60.118 47.826 0.00 0.00 0.00 2.41
4223 7185 2.706339 AAGAGCCAGCATCCTTACAG 57.294 50.000 0.00 0.00 0.00 2.74
4224 7186 1.577736 AGAGCCAGCATCCTTACAGT 58.422 50.000 0.00 0.00 0.00 3.55
4225 7187 1.484240 AGAGCCAGCATCCTTACAGTC 59.516 52.381 0.00 0.00 0.00 3.51
4226 7188 0.176680 AGCCAGCATCCTTACAGTCG 59.823 55.000 0.00 0.00 0.00 4.18
4227 7189 0.108138 GCCAGCATCCTTACAGTCGT 60.108 55.000 0.00 0.00 0.00 4.34
4228 7190 1.676014 GCCAGCATCCTTACAGTCGTT 60.676 52.381 0.00 0.00 0.00 3.85
4229 7191 2.418197 GCCAGCATCCTTACAGTCGTTA 60.418 50.000 0.00 0.00 0.00 3.18
4230 7192 3.187700 CCAGCATCCTTACAGTCGTTAC 58.812 50.000 0.00 0.00 0.00 2.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.803555 GGAGAAGTTGCTGCTTGAGTC 59.196 52.381 0.00 0.00 0.00 3.36
52 57 5.751509 TCCATTACGTTCATACCGATTTCTG 59.248 40.000 0.00 0.00 0.00 3.02
68 73 9.594478 TGTGCATACCTATATTTATCCATTACG 57.406 33.333 0.00 0.00 0.00 3.18
94 102 5.247084 CGTGGTATCTAGTAGTAGCATCCT 58.753 45.833 11.95 0.00 31.83 3.24
104 112 5.347620 AAAATGTGGCGTGGTATCTAGTA 57.652 39.130 0.00 0.00 0.00 1.82
105 113 3.906720 AAATGTGGCGTGGTATCTAGT 57.093 42.857 0.00 0.00 0.00 2.57
106 114 6.706270 AGAATAAAATGTGGCGTGGTATCTAG 59.294 38.462 0.00 0.00 0.00 2.43
110 118 5.650266 TGAAGAATAAAATGTGGCGTGGTAT 59.350 36.000 0.00 0.00 0.00 2.73
367 375 1.089920 CAATCAAAGAGGTGGAGGCG 58.910 55.000 0.00 0.00 0.00 5.52
383 391 2.671619 CGTGGTTGACGGGGCAAT 60.672 61.111 0.00 0.00 44.85 3.56
449 457 2.286872 TCAGTAATCTCGACCCGACTC 58.713 52.381 0.00 0.00 0.00 3.36
481 489 1.444553 CTCGTCTCAAGACACGGCC 60.445 63.158 10.56 0.00 44.99 6.13
599 614 4.416601 CCCCTTCCTCCTCCCCGT 62.417 72.222 0.00 0.00 0.00 5.28
856 886 2.004583 CACGTTATCTTTCGAGCCCA 57.995 50.000 0.00 0.00 0.00 5.36
876 906 3.253677 CAGGCTATCTACCTACAGTTCGG 59.746 52.174 0.00 0.00 35.10 4.30
878 908 5.855740 AACAGGCTATCTACCTACAGTTC 57.144 43.478 0.00 0.00 35.10 3.01
879 909 5.104900 CCAAACAGGCTATCTACCTACAGTT 60.105 44.000 0.00 0.00 35.10 3.16
881 911 4.202264 CCCAAACAGGCTATCTACCTACAG 60.202 50.000 0.00 0.00 35.10 2.74
882 912 3.709653 CCCAAACAGGCTATCTACCTACA 59.290 47.826 0.00 0.00 35.10 2.74
883 913 4.338379 CCCAAACAGGCTATCTACCTAC 57.662 50.000 0.00 0.00 35.10 3.18
940 973 1.843851 TCCCCTCTCTCTCTCTGTCTC 59.156 57.143 0.00 0.00 0.00 3.36
944 977 3.055458 GGTTTTTCCCCTCTCTCTCTCTG 60.055 52.174 0.00 0.00 0.00 3.35
1025 1085 1.228337 TTCACCTCGACCGTCTCCA 60.228 57.895 0.00 0.00 0.00 3.86
1066 1129 4.910585 GCGGATGGTAGTGGGCCG 62.911 72.222 0.00 0.00 44.47 6.13
1124 1187 1.701847 AGCAAGGCAAGAAGAAGGAGA 59.298 47.619 0.00 0.00 0.00 3.71
1147 1210 3.725267 ACCGATCCCCAATTAATTAGGGT 59.275 43.478 25.37 14.76 39.40 4.34
1263 1326 3.300765 GTGTCGTCTCCCCACGGT 61.301 66.667 0.00 0.00 40.35 4.83
1318 1381 1.192428 GACGGAGGAGGGTATGTGTT 58.808 55.000 0.00 0.00 0.00 3.32
1360 1426 1.578618 GAACGATGCGAGCTTTGCG 60.579 57.895 7.30 0.00 34.24 4.85
1429 1495 5.569355 AGTGGATGAACATCACCAACAATA 58.431 37.500 15.22 0.00 39.54 1.90
1466 1532 2.821546 TCTGGCACATAAGACGTATGC 58.178 47.619 8.14 0.00 43.10 3.14
1472 1538 4.462483 TGGGAAATTTCTGGCACATAAGAC 59.538 41.667 17.42 0.00 38.20 3.01
1519 3510 3.505680 TGCACAAATAAGAACTTGGCGAT 59.494 39.130 0.00 0.00 0.00 4.58
1522 3513 5.695816 TCAAATGCACAAATAAGAACTTGGC 59.304 36.000 0.00 0.00 0.00 4.52
1542 3534 8.786826 AATAAACGTCCACAAGAGATATCAAA 57.213 30.769 5.32 0.00 0.00 2.69
1876 3887 4.478699 CACATTGGTCATTTGCACTACTG 58.521 43.478 0.00 0.00 0.00 2.74
1877 3888 3.507233 CCACATTGGTCATTTGCACTACT 59.493 43.478 0.00 0.00 31.35 2.57
1967 3978 6.204882 GCCAATAGGAACCATAGTGTGATAAC 59.795 42.308 0.00 0.00 36.89 1.89
2017 4028 8.260099 AGGAGTTACTTACATATAAAGGTCCC 57.740 38.462 0.00 0.00 0.00 4.46
2065 4076 9.409918 AGAGCTCGGATACTGCTAATAATAATA 57.590 33.333 8.37 0.00 42.63 0.98
2134 4152 8.700973 TGATATGTACTATGTTCAAACTGGCTA 58.299 33.333 0.00 0.00 0.00 3.93
2150 4168 9.725019 TGAACTTGACAGAAATTGATATGTACT 57.275 29.630 0.00 0.00 0.00 2.73
2170 4188 7.557719 CAGGTATTATTCCCATGTCTTGAACTT 59.442 37.037 0.00 0.00 0.00 2.66
2182 4200 4.162698 AGCAACGTACAGGTATTATTCCCA 59.837 41.667 0.00 0.00 0.00 4.37
2243 4270 9.391006 GGACTATACATAGAATTGAAAACCACA 57.609 33.333 3.27 0.00 34.50 4.17
2360 4387 7.393234 TGCTAATTACTTTGGAAACTGTAGCAT 59.607 33.333 0.00 0.00 36.29 3.79
2375 4402 6.377146 ACCAAATCGGACATTGCTAATTACTT 59.623 34.615 0.98 0.00 38.63 2.24
2391 4418 3.941483 ACTGAAATCTAGCACCAAATCGG 59.059 43.478 0.00 0.00 42.50 4.18
2417 4444 8.223769 CAGACAACAAACAGTAATATCTGTCAC 58.776 37.037 0.00 0.00 46.25 3.67
2437 4467 1.675714 CGCAAGTATCTGGGCAGACAA 60.676 52.381 0.00 0.00 40.75 3.18
2520 4550 3.133542 TCACAGACTGAAGGGCATAGATG 59.866 47.826 10.08 0.00 0.00 2.90
2540 4572 3.244422 GGAGGGAGTACACAACAACATCA 60.244 47.826 0.00 0.00 0.00 3.07
2541 4573 3.335579 GGAGGGAGTACACAACAACATC 58.664 50.000 0.00 0.00 0.00 3.06
2552 4584 3.889520 AAATCAGAACGGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
2553 4585 4.607239 AGTAAATCAGAACGGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
2554 4586 3.442076 AGTAAATCAGAACGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
2555 4587 3.489398 CGAGTAAATCAGAACGGAGGGAG 60.489 52.174 0.00 0.00 0.00 4.30
2556 4588 2.426024 CGAGTAAATCAGAACGGAGGGA 59.574 50.000 0.00 0.00 0.00 4.20
2557 4589 2.165845 ACGAGTAAATCAGAACGGAGGG 59.834 50.000 0.00 0.00 0.00 4.30
2558 4590 3.505464 ACGAGTAAATCAGAACGGAGG 57.495 47.619 0.00 0.00 0.00 4.30
2559 4591 4.090066 CACAACGAGTAAATCAGAACGGAG 59.910 45.833 0.00 0.00 0.00 4.63
2560 4592 3.985279 CACAACGAGTAAATCAGAACGGA 59.015 43.478 0.00 0.00 0.00 4.69
2561 4593 3.122948 CCACAACGAGTAAATCAGAACGG 59.877 47.826 0.00 0.00 0.00 4.44
2562 4594 3.739300 ACCACAACGAGTAAATCAGAACG 59.261 43.478 0.00 0.00 0.00 3.95
2563 4595 5.668558 AACCACAACGAGTAAATCAGAAC 57.331 39.130 0.00 0.00 0.00 3.01
2564 4596 6.687081 AAAACCACAACGAGTAAATCAGAA 57.313 33.333 0.00 0.00 0.00 3.02
2565 4597 6.987992 ACTAAAACCACAACGAGTAAATCAGA 59.012 34.615 0.00 0.00 0.00 3.27
2566 4598 7.186021 ACTAAAACCACAACGAGTAAATCAG 57.814 36.000 0.00 0.00 0.00 2.90
2567 4599 7.280428 TGAACTAAAACCACAACGAGTAAATCA 59.720 33.333 0.00 0.00 0.00 2.57
2568 4600 7.632721 TGAACTAAAACCACAACGAGTAAATC 58.367 34.615 0.00 0.00 0.00 2.17
2569 4601 7.556733 TGAACTAAAACCACAACGAGTAAAT 57.443 32.000 0.00 0.00 0.00 1.40
2570 4602 6.981762 TGAACTAAAACCACAACGAGTAAA 57.018 33.333 0.00 0.00 0.00 2.01
2571 4603 6.981762 TTGAACTAAAACCACAACGAGTAA 57.018 33.333 0.00 0.00 0.00 2.24
2572 4604 6.981762 TTTGAACTAAAACCACAACGAGTA 57.018 33.333 0.00 0.00 0.00 2.59
2573 4605 5.883503 TTTGAACTAAAACCACAACGAGT 57.116 34.783 0.00 0.00 0.00 4.18
2574 4606 7.486551 TCAAATTTGAACTAAAACCACAACGAG 59.513 33.333 18.45 0.00 33.55 4.18
2575 4607 7.313646 TCAAATTTGAACTAAAACCACAACGA 58.686 30.769 18.45 0.00 33.55 3.85
2576 4608 7.513190 TCAAATTTGAACTAAAACCACAACG 57.487 32.000 18.45 0.00 33.55 4.10
2590 4622 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
2591 4623 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
2592 4624 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
2593 4625 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
2594 4626 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
2595 4627 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
2596 4628 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
2597 4629 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
2598 4630 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
2599 4631 5.888412 TTTACTCGTCGTGGTTTTAGTTC 57.112 39.130 0.00 0.00 0.00 3.01
2600 4632 5.117592 CGATTTACTCGTCGTGGTTTTAGTT 59.882 40.000 0.00 0.00 42.56 2.24
2601 4633 4.618489 CGATTTACTCGTCGTGGTTTTAGT 59.382 41.667 0.00 0.00 42.56 2.24
2602 4634 4.030977 CCGATTTACTCGTCGTGGTTTTAG 59.969 45.833 0.00 0.00 46.18 1.85
2603 4635 3.919804 CCGATTTACTCGTCGTGGTTTTA 59.080 43.478 0.00 0.00 46.18 1.52
2604 4636 2.733026 CCGATTTACTCGTCGTGGTTTT 59.267 45.455 0.00 0.00 46.18 2.43
2605 4637 2.030007 TCCGATTTACTCGTCGTGGTTT 60.030 45.455 0.00 0.00 46.18 3.27
2606 4638 1.541147 TCCGATTTACTCGTCGTGGTT 59.459 47.619 0.00 0.00 46.18 3.67
2607 4639 1.167851 TCCGATTTACTCGTCGTGGT 58.832 50.000 0.00 0.00 46.18 4.16
2608 4640 1.916000 GTTCCGATTTACTCGTCGTGG 59.084 52.381 0.00 0.00 46.18 4.94
2609 4641 1.576246 CGTTCCGATTTACTCGTCGTG 59.424 52.381 0.00 0.00 46.18 4.35
2610 4642 1.466360 CCGTTCCGATTTACTCGTCGT 60.466 52.381 0.00 0.00 46.18 4.34
2611 4643 1.186030 CCGTTCCGATTTACTCGTCG 58.814 55.000 0.00 0.00 46.18 5.12
2612 4644 2.448219 CTCCGTTCCGATTTACTCGTC 58.552 52.381 0.00 0.00 46.18 4.20
2613 4645 1.133790 CCTCCGTTCCGATTTACTCGT 59.866 52.381 0.00 0.00 46.18 4.18
2615 4647 1.753073 TCCCTCCGTTCCGATTTACTC 59.247 52.381 0.00 0.00 0.00 2.59
2616 4648 1.755380 CTCCCTCCGTTCCGATTTACT 59.245 52.381 0.00 0.00 0.00 2.24
2617 4649 1.479730 ACTCCCTCCGTTCCGATTTAC 59.520 52.381 0.00 0.00 0.00 2.01
2618 4650 1.856629 ACTCCCTCCGTTCCGATTTA 58.143 50.000 0.00 0.00 0.00 1.40
2619 4651 1.755380 CTACTCCCTCCGTTCCGATTT 59.245 52.381 0.00 0.00 0.00 2.17
2620 4652 1.341778 ACTACTCCCTCCGTTCCGATT 60.342 52.381 0.00 0.00 0.00 3.34
2621 4653 0.258194 ACTACTCCCTCCGTTCCGAT 59.742 55.000 0.00 0.00 0.00 4.18
2622 4654 0.038744 AACTACTCCCTCCGTTCCGA 59.961 55.000 0.00 0.00 0.00 4.55
2623 4655 0.893447 AAACTACTCCCTCCGTTCCG 59.107 55.000 0.00 0.00 0.00 4.30
2624 4656 3.359950 TCTAAACTACTCCCTCCGTTCC 58.640 50.000 0.00 0.00 0.00 3.62
2625 4657 4.015764 ACTCTAAACTACTCCCTCCGTTC 58.984 47.826 0.00 0.00 0.00 3.95
2626 4658 3.762823 CACTCTAAACTACTCCCTCCGTT 59.237 47.826 0.00 0.00 0.00 4.44
2627 4659 3.009916 TCACTCTAAACTACTCCCTCCGT 59.990 47.826 0.00 0.00 0.00 4.69
2628 4660 3.618351 TCACTCTAAACTACTCCCTCCG 58.382 50.000 0.00 0.00 0.00 4.63
2629 4661 5.997384 TTTCACTCTAAACTACTCCCTCC 57.003 43.478 0.00 0.00 0.00 4.30
2630 4662 6.995364 ACTTTTCACTCTAAACTACTCCCTC 58.005 40.000 0.00 0.00 0.00 4.30
2631 4663 6.997942 ACTTTTCACTCTAAACTACTCCCT 57.002 37.500 0.00 0.00 0.00 4.20
2632 4664 6.427242 CCAACTTTTCACTCTAAACTACTCCC 59.573 42.308 0.00 0.00 0.00 4.30
2633 4665 6.073167 GCCAACTTTTCACTCTAAACTACTCC 60.073 42.308 0.00 0.00 0.00 3.85
2634 4666 6.706716 AGCCAACTTTTCACTCTAAACTACTC 59.293 38.462 0.00 0.00 0.00 2.59
2635 4667 6.592870 AGCCAACTTTTCACTCTAAACTACT 58.407 36.000 0.00 0.00 0.00 2.57
2752 4789 5.238650 ACTTCTATCCAACAAAGTGAAACCG 59.761 40.000 0.00 0.00 37.80 4.44
2761 4798 4.215399 CCTGCGAAACTTCTATCCAACAAA 59.785 41.667 0.00 0.00 0.00 2.83
2772 4809 4.489679 AATGAAACTCCTGCGAAACTTC 57.510 40.909 0.00 0.00 0.00 3.01
2778 4815 4.693283 CCTATGTAATGAAACTCCTGCGA 58.307 43.478 0.00 0.00 0.00 5.10
2779 4816 3.248602 GCCTATGTAATGAAACTCCTGCG 59.751 47.826 0.00 0.00 0.00 5.18
2956 4996 5.726138 GCACTTGCGAGATTCAGTTATTCTG 60.726 44.000 8.31 0.00 44.85 3.02
3015 5055 6.959361 GCATGAGCTCCGAAGATTTAAATAA 58.041 36.000 12.15 0.00 37.91 1.40
3063 5187 4.652421 ACTGTAACTTCCCAACACACTCTA 59.348 41.667 0.00 0.00 0.00 2.43
3065 5189 3.805207 ACTGTAACTTCCCAACACACTC 58.195 45.455 0.00 0.00 0.00 3.51
3232 5356 1.281867 TCCTGGCAACACAGATAAGGG 59.718 52.381 0.00 0.00 46.17 3.95
3246 5370 2.967270 AGGAAAATGCAGTCCTGGC 58.033 52.632 14.01 0.00 42.87 4.85
3264 5388 5.945191 TCTGGATTTGCACACTCAAATATCA 59.055 36.000 2.20 4.10 44.15 2.15
3416 5548 0.388649 ATCGCACAGGAGACGACAAC 60.389 55.000 0.00 0.00 38.85 3.32
3422 5554 1.216444 TGCTCATCGCACAGGAGAC 59.784 57.895 0.00 0.00 45.47 3.36
3461 5593 5.006649 ACGCACATTAGCACATGTATGTAAG 59.993 40.000 10.81 10.22 39.39 2.34
3477 5609 2.159043 CCTGGTAGATCTGACGCACATT 60.159 50.000 5.18 0.00 0.00 2.71
3523 5660 5.864628 AATCGGCTCAAGACTTTTAACTC 57.135 39.130 0.00 0.00 0.00 3.01
3528 5665 4.137543 AGTCAAATCGGCTCAAGACTTTT 58.862 39.130 0.00 0.00 32.88 2.27
3550 5687 5.901552 TCATGAGATGCGTTCTTGTACATA 58.098 37.500 0.00 0.00 33.74 2.29
3566 5703 4.200838 TGTGTAAAATCGGCTCATGAGA 57.799 40.909 27.04 6.23 0.00 3.27
3567 5704 4.260907 CCATGTGTAAAATCGGCTCATGAG 60.261 45.833 18.84 18.84 0.00 2.90
3570 5707 2.951642 CCCATGTGTAAAATCGGCTCAT 59.048 45.455 0.00 0.00 0.00 2.90
3571 5708 2.026729 TCCCATGTGTAAAATCGGCTCA 60.027 45.455 0.00 0.00 0.00 4.26
3572 5709 2.639065 TCCCATGTGTAAAATCGGCTC 58.361 47.619 0.00 0.00 0.00 4.70
3574 5711 4.578928 AGTAATCCCATGTGTAAAATCGGC 59.421 41.667 0.00 0.00 0.00 5.54
3576 5713 6.017934 CAGGAGTAATCCCATGTGTAAAATCG 60.018 42.308 5.39 0.00 0.00 3.34
3579 5716 4.947388 GCAGGAGTAATCCCATGTGTAAAA 59.053 41.667 5.39 0.00 0.00 1.52
3580 5717 4.018870 TGCAGGAGTAATCCCATGTGTAAA 60.019 41.667 5.39 0.00 0.00 2.01
3581 5718 3.521531 TGCAGGAGTAATCCCATGTGTAA 59.478 43.478 5.39 0.00 0.00 2.41
3582 5719 3.111484 TGCAGGAGTAATCCCATGTGTA 58.889 45.455 5.39 0.00 0.00 2.90
3583 5720 1.915489 TGCAGGAGTAATCCCATGTGT 59.085 47.619 5.39 0.00 0.00 3.72
3584 5721 2.715749 TGCAGGAGTAATCCCATGTG 57.284 50.000 5.39 0.00 0.00 3.21
3585 5722 2.158564 CCATGCAGGAGTAATCCCATGT 60.159 50.000 20.13 0.00 41.22 3.21
3586 5723 2.511659 CCATGCAGGAGTAATCCCATG 58.488 52.381 16.87 16.87 41.22 3.66
3587 5724 1.426598 CCCATGCAGGAGTAATCCCAT 59.573 52.381 5.39 0.10 41.22 4.00
3588 5725 0.846015 CCCATGCAGGAGTAATCCCA 59.154 55.000 5.39 0.00 41.22 4.37
3591 5728 3.281727 TTGACCCATGCAGGAGTAATC 57.718 47.619 0.00 0.00 41.22 1.75
3593 5730 2.575735 TGATTGACCCATGCAGGAGTAA 59.424 45.455 0.00 0.00 41.22 2.24
3594 5731 2.092968 GTGATTGACCCATGCAGGAGTA 60.093 50.000 0.00 0.00 41.22 2.59
3595 5732 0.994247 TGATTGACCCATGCAGGAGT 59.006 50.000 0.00 0.00 41.22 3.85
3596 5733 1.340308 TGTGATTGACCCATGCAGGAG 60.340 52.381 0.00 0.00 41.22 3.69
3598 5735 1.203052 GTTGTGATTGACCCATGCAGG 59.797 52.381 0.00 0.00 37.03 4.85
3599 5736 1.887854 TGTTGTGATTGACCCATGCAG 59.112 47.619 0.00 0.00 0.00 4.41
3600 5737 1.887854 CTGTTGTGATTGACCCATGCA 59.112 47.619 0.00 0.00 0.00 3.96
3602 5739 2.517959 ACCTGTTGTGATTGACCCATG 58.482 47.619 0.00 0.00 0.00 3.66
3634 5817 3.057386 TGCACGAAACATCAAGATGCATT 60.057 39.130 9.85 5.80 42.39 3.56
3636 5819 1.878734 TGCACGAAACATCAAGATGCA 59.121 42.857 9.85 0.00 42.39 3.96
3637 5820 2.617250 TGCACGAAACATCAAGATGC 57.383 45.000 9.85 0.00 42.39 3.91
3638 5821 3.302434 GCATTGCACGAAACATCAAGATG 59.698 43.478 8.45 8.45 44.15 2.90
3639 5822 3.057386 TGCATTGCACGAAACATCAAGAT 60.057 39.130 7.38 0.00 31.71 2.40
3641 5824 2.663808 TGCATTGCACGAAACATCAAG 58.336 42.857 7.38 0.00 31.71 3.02
3654 5837 3.924238 CAAGATACCCGTGCATTGC 57.076 52.632 0.46 0.46 0.00 3.56
3660 5843 3.068165 TCATGACTAGCAAGATACCCGTG 59.932 47.826 0.00 0.00 0.00 4.94
3661 5844 3.296854 TCATGACTAGCAAGATACCCGT 58.703 45.455 0.00 0.00 0.00 5.28
3662 5845 4.021981 TGATCATGACTAGCAAGATACCCG 60.022 45.833 0.00 0.00 35.24 5.28
3664 5847 6.462500 ACATGATCATGACTAGCAAGATACC 58.538 40.000 36.37 0.00 41.20 2.73
3665 5848 7.328982 CAGACATGATCATGACTAGCAAGATAC 59.671 40.741 36.37 13.34 40.73 2.24
3666 5849 7.376615 CAGACATGATCATGACTAGCAAGATA 58.623 38.462 36.37 0.00 40.73 1.98
3668 5851 5.452917 CCAGACATGATCATGACTAGCAAGA 60.453 44.000 36.37 0.00 40.73 3.02
3669 5852 4.750598 CCAGACATGATCATGACTAGCAAG 59.249 45.833 36.37 22.97 40.73 4.01
3670 5853 4.700700 CCAGACATGATCATGACTAGCAA 58.299 43.478 36.37 0.00 40.73 3.91
3671 5854 3.493873 GCCAGACATGATCATGACTAGCA 60.494 47.826 34.56 1.15 43.19 3.49
3672 5855 3.065655 GCCAGACATGATCATGACTAGC 58.934 50.000 36.37 32.83 40.73 3.42
3673 5856 4.332428 TGCCAGACATGATCATGACTAG 57.668 45.455 36.37 28.65 40.73 2.57
3674 5857 4.968971 ATGCCAGACATGATCATGACTA 57.031 40.909 36.37 22.51 40.73 2.59
3694 6449 6.704310 AGCAAAGAAGAAAATAACATGCCAT 58.296 32.000 0.00 0.00 31.91 4.40
3738 6493 7.275920 TGCTTAAGATTCAAGAGATAACCTCC 58.724 38.462 6.67 0.00 42.97 4.30
3832 6593 1.479323 ACCATTACGCCGTAGTCACAT 59.521 47.619 0.00 0.00 0.00 3.21
3888 6817 3.120304 GCTCGAGATACCAAAACACCAAC 60.120 47.826 18.75 0.00 0.00 3.77
3917 6846 1.228124 TGCTGCCAGTGTTACCCAC 60.228 57.895 0.00 0.00 44.89 4.61
3987 6948 9.531942 TCTTCGTCTATGTGTGTAAAAACTAAA 57.468 29.630 0.00 0.00 0.00 1.85
3988 6949 9.701098 ATCTTCGTCTATGTGTGTAAAAACTAA 57.299 29.630 0.00 0.00 0.00 2.24
3989 6950 9.701098 AATCTTCGTCTATGTGTGTAAAAACTA 57.299 29.630 0.00 0.00 0.00 2.24
3990 6951 8.603242 AATCTTCGTCTATGTGTGTAAAAACT 57.397 30.769 0.00 0.00 0.00 2.66
3991 6952 9.737025 GTAATCTTCGTCTATGTGTGTAAAAAC 57.263 33.333 0.00 0.00 0.00 2.43
4009 6970 7.496263 GGGAGAGTAATGACCTTTGTAATCTTC 59.504 40.741 0.00 0.00 0.00 2.87
4023 6985 6.238676 CGTCTCTTTTATCGGGAGAGTAATGA 60.239 42.308 0.00 0.00 45.48 2.57
4047 7009 7.041030 ACAAGGTCTATATCAGTATGTGTCTCG 60.041 40.741 0.00 0.00 37.40 4.04
4088 7050 4.202090 CCCGGTCTACAACAAGGTCTATAC 60.202 50.000 0.00 0.00 0.00 1.47
4122 7084 2.484264 GCACTTTCCTTAGCACGAATGT 59.516 45.455 0.00 0.00 0.00 2.71
4155 7117 2.379907 AGCCCCCTCTTTCAATCAAGAA 59.620 45.455 0.00 0.00 32.24 2.52
4156 7118 1.995542 AGCCCCCTCTTTCAATCAAGA 59.004 47.619 0.00 0.00 0.00 3.02
4157 7119 2.521547 AGCCCCCTCTTTCAATCAAG 57.478 50.000 0.00 0.00 0.00 3.02
4158 7120 2.557452 GGAAGCCCCCTCTTTCAATCAA 60.557 50.000 0.00 0.00 0.00 2.57
4159 7121 1.005924 GGAAGCCCCCTCTTTCAATCA 59.994 52.381 0.00 0.00 0.00 2.57
4160 7122 1.769026 GGAAGCCCCCTCTTTCAATC 58.231 55.000 0.00 0.00 0.00 2.67
4172 7134 0.256177 AAGAAATCGGAGGGAAGCCC 59.744 55.000 0.00 0.00 45.90 5.19
4173 7135 2.130272 AAAGAAATCGGAGGGAAGCC 57.870 50.000 0.00 0.00 0.00 4.35
4174 7136 2.943690 GGTAAAGAAATCGGAGGGAAGC 59.056 50.000 0.00 0.00 0.00 3.86
4175 7137 3.118884 TCGGTAAAGAAATCGGAGGGAAG 60.119 47.826 0.00 0.00 0.00 3.46
4176 7138 2.833338 TCGGTAAAGAAATCGGAGGGAA 59.167 45.455 0.00 0.00 0.00 3.97
4177 7139 2.459644 TCGGTAAAGAAATCGGAGGGA 58.540 47.619 0.00 0.00 0.00 4.20
4178 7140 2.973694 TCGGTAAAGAAATCGGAGGG 57.026 50.000 0.00 0.00 0.00 4.30
4179 7141 3.373130 GGTTTCGGTAAAGAAATCGGAGG 59.627 47.826 0.00 0.00 41.46 4.30
4180 7142 4.251268 AGGTTTCGGTAAAGAAATCGGAG 58.749 43.478 0.00 0.00 43.82 4.63
4181 7143 4.276058 AGGTTTCGGTAAAGAAATCGGA 57.724 40.909 0.00 0.00 43.82 4.55
4182 7144 6.369615 TCTTTAGGTTTCGGTAAAGAAATCGG 59.630 38.462 2.75 0.00 43.82 4.18
4183 7145 7.355332 TCTTTAGGTTTCGGTAAAGAAATCG 57.645 36.000 2.75 0.00 43.82 3.34
4184 7146 7.242079 GCTCTTTAGGTTTCGGTAAAGAAATC 58.758 38.462 6.13 0.00 42.12 2.17
4185 7147 6.150641 GGCTCTTTAGGTTTCGGTAAAGAAAT 59.849 38.462 6.13 0.00 42.12 2.17
4186 7148 5.471116 GGCTCTTTAGGTTTCGGTAAAGAAA 59.529 40.000 6.13 0.00 42.12 2.52
4187 7149 4.999311 GGCTCTTTAGGTTTCGGTAAAGAA 59.001 41.667 6.13 0.00 42.12 2.52
4188 7150 4.040706 TGGCTCTTTAGGTTTCGGTAAAGA 59.959 41.667 4.85 4.85 41.05 2.52
4189 7151 4.320870 TGGCTCTTTAGGTTTCGGTAAAG 58.679 43.478 0.00 0.00 37.52 1.85
4190 7152 4.320870 CTGGCTCTTTAGGTTTCGGTAAA 58.679 43.478 0.00 0.00 0.00 2.01
4191 7153 3.867216 GCTGGCTCTTTAGGTTTCGGTAA 60.867 47.826 0.00 0.00 0.00 2.85
4192 7154 2.354403 GCTGGCTCTTTAGGTTTCGGTA 60.354 50.000 0.00 0.00 0.00 4.02
4193 7155 1.610886 GCTGGCTCTTTAGGTTTCGGT 60.611 52.381 0.00 0.00 0.00 4.69
4194 7156 1.087501 GCTGGCTCTTTAGGTTTCGG 58.912 55.000 0.00 0.00 0.00 4.30
4195 7157 1.808411 TGCTGGCTCTTTAGGTTTCG 58.192 50.000 0.00 0.00 0.00 3.46
4196 7158 2.685388 GGATGCTGGCTCTTTAGGTTTC 59.315 50.000 0.00 0.00 0.00 2.78
4197 7159 2.310052 AGGATGCTGGCTCTTTAGGTTT 59.690 45.455 0.00 0.00 0.00 3.27
4198 7160 1.918957 AGGATGCTGGCTCTTTAGGTT 59.081 47.619 0.00 0.00 0.00 3.50
4199 7161 1.589414 AGGATGCTGGCTCTTTAGGT 58.411 50.000 0.00 0.00 0.00 3.08
4200 7162 2.725221 AAGGATGCTGGCTCTTTAGG 57.275 50.000 0.00 0.00 0.00 2.69
4201 7163 4.125703 CTGTAAGGATGCTGGCTCTTTAG 58.874 47.826 0.00 0.00 0.00 1.85
4202 7164 3.519510 ACTGTAAGGATGCTGGCTCTTTA 59.480 43.478 0.00 0.00 39.30 1.85
4203 7165 2.307098 ACTGTAAGGATGCTGGCTCTTT 59.693 45.455 0.00 0.00 39.30 2.52
4204 7166 1.912043 ACTGTAAGGATGCTGGCTCTT 59.088 47.619 0.00 0.00 39.30 2.85
4205 7167 1.484240 GACTGTAAGGATGCTGGCTCT 59.516 52.381 0.00 0.00 39.30 4.09
4206 7168 1.804372 CGACTGTAAGGATGCTGGCTC 60.804 57.143 0.00 0.00 39.30 4.70
4207 7169 0.176680 CGACTGTAAGGATGCTGGCT 59.823 55.000 0.00 0.00 39.30 4.75
4208 7170 0.108138 ACGACTGTAAGGATGCTGGC 60.108 55.000 0.00 0.00 39.30 4.85
4209 7171 2.386661 AACGACTGTAAGGATGCTGG 57.613 50.000 0.00 0.00 39.30 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.