Multiple sequence alignment - TraesCS5B01G209500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G209500 chr5B 100.000 4638 0 0 1 4638 379337358 379332721 0.000000e+00 8565.0
1 TraesCS5B01G209500 chr5B 85.345 116 11 4 4042 4152 573568591 573568705 1.050000e-21 115.0
2 TraesCS5B01G209500 chr5D 95.350 4000 111 18 13 3962 326737476 326733502 0.000000e+00 6287.0
3 TraesCS5B01G209500 chr5D 92.765 387 25 3 3962 4347 326731778 326731394 1.460000e-154 556.0
4 TraesCS5B01G209500 chr5D 90.845 284 24 2 4353 4635 326731413 326731131 3.390000e-101 379.0
5 TraesCS5B01G209500 chr5D 94.167 240 12 1 1636 1873 524590476 524590237 9.480000e-97 364.0
6 TraesCS5B01G209500 chr5D 79.054 148 27 2 1638 1783 369295537 369295682 1.060000e-16 99.0
7 TraesCS5B01G209500 chr5A 94.214 3405 128 26 663 4047 429753880 429757235 0.000000e+00 5132.0
8 TraesCS5B01G209500 chr5A 93.617 329 14 4 1 322 429753290 429753618 6.980000e-133 484.0
9 TraesCS5B01G209500 chr5A 93.284 268 8 4 374 632 429753626 429753892 2.020000e-103 387.0
10 TraesCS5B01G209500 chr5A 89.439 303 28 4 4046 4347 429757393 429757692 3.390000e-101 379.0
11 TraesCS5B01G209500 chr5A 85.714 287 36 5 4352 4635 429757671 429757955 9.760000e-77 298.0
12 TraesCS5B01G209500 chr5A 78.378 148 28 2 1638 1783 471692696 471692841 4.940000e-15 93.5
13 TraesCS5B01G209500 chr1B 91.362 301 21 4 2036 2334 26338126 26337829 1.550000e-109 407.0
14 TraesCS5B01G209500 chr1B 93.436 259 17 0 1779 2037 26360608 26360350 7.280000e-103 385.0
15 TraesCS5B01G209500 chr1B 91.981 212 16 1 2124 2334 4156070 4155859 3.510000e-76 296.0
16 TraesCS5B01G209500 chr1B 84.688 320 23 12 1810 2129 4177956 4177663 3.510000e-76 296.0
17 TraesCS5B01G209500 chr1B 84.701 268 19 7 1441 1698 26360862 26360607 9.970000e-62 248.0
18 TraesCS5B01G209500 chr1B 92.248 129 8 2 1571 1698 4178140 4178013 1.030000e-41 182.0
19 TraesCS5B01G209500 chr1B 94.444 54 3 0 1336 1389 4178247 4178194 2.970000e-12 84.2
20 TraesCS5B01G209500 chr1B 92.593 54 4 0 1336 1389 26360914 26360861 1.380000e-10 78.7
21 TraesCS5B01G209500 chr3D 93.013 229 15 1 1646 1873 47139046 47138818 2.670000e-87 333.0
22 TraesCS5B01G209500 chr4D 82.713 376 55 8 3983 4351 80539151 80539523 4.480000e-85 326.0
23 TraesCS5B01G209500 chr4D 82.979 329 34 6 4042 4351 301120414 301120089 1.270000e-70 278.0
24 TraesCS5B01G209500 chr4D 83.453 278 38 7 4362 4635 248314604 248314331 7.700000e-63 252.0
25 TraesCS5B01G209500 chr4D 78.195 133 24 4 1655 1783 443512321 443512190 3.850000e-11 80.5
26 TraesCS5B01G209500 chr4B 82.199 382 45 10 3983 4351 112799751 112800122 1.620000e-79 307.0
27 TraesCS5B01G209500 chr4B 72.800 250 59 8 1540 1783 552831931 552831685 4.980000e-10 76.8
28 TraesCS5B01G209500 chr4A 81.201 383 48 13 3983 4351 505066870 505066498 2.110000e-73 287.0
29 TraesCS5B01G209500 chr2D 81.325 332 42 10 2213 2542 605094330 605094017 7.700000e-63 252.0
30 TraesCS5B01G209500 chr2D 83.621 116 13 3 4042 4152 273431461 273431575 2.280000e-18 104.0
31 TraesCS5B01G209500 chr2A 83.032 277 27 3 4042 4298 91315812 91316088 2.790000e-57 233.0
32 TraesCS5B01G209500 chr2B 73.800 500 108 16 1405 1897 596410843 596411326 4.770000e-40 176.0
33 TraesCS5B01G209500 chr7B 86.087 115 12 1 4042 4152 334984402 334984288 2.270000e-23 121.0
34 TraesCS5B01G209500 chr7B 85.217 115 13 1 4042 4152 335030381 335030267 1.050000e-21 115.0
35 TraesCS5B01G209500 chr7B 84.483 116 7 5 4037 4152 281131990 281131886 2.280000e-18 104.0
36 TraesCS5B01G209500 chr6D 85.345 116 11 3 4042 4152 203713380 203713494 1.050000e-21 115.0
37 TraesCS5B01G209500 chr1D 95.745 47 2 0 2029 2075 475248863 475248909 4.980000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G209500 chr5B 379332721 379337358 4637 True 8565.000000 8565 100.000000 1 4638 1 chr5B.!!$R1 4637
1 TraesCS5B01G209500 chr5D 326731131 326737476 6345 True 2407.333333 6287 92.986667 13 4635 3 chr5D.!!$R2 4622
2 TraesCS5B01G209500 chr5A 429753290 429757955 4665 False 1336.000000 5132 91.253600 1 4635 5 chr5A.!!$F2 4634
3 TraesCS5B01G209500 chr1B 26360350 26360914 564 True 237.233333 385 90.243333 1336 2037 3 chr1B.!!$R4 701

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 65 0.752009 TCGACGGAATCCAGCTAGCT 60.752 55.000 12.68 12.68 0.00 3.32 F
371 378 1.010935 CAGCGACGCAGACATGAACT 61.011 55.000 23.70 0.00 0.00 3.01 F
2100 2171 1.433471 CGGCATGTCGCTCTACTCA 59.567 57.895 6.84 0.00 41.91 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1029 1090 1.457455 GAGGCAGAGGAGGAGGAGG 60.457 68.421 0.0 0.0 0.00 4.30 R
2113 2184 1.068588 CAGAGGGAACTTGTCGTCACA 59.931 52.381 0.0 0.0 44.43 3.58 R
3789 3863 0.039618 GCTGTTCCCATCCCCTGAAA 59.960 55.000 0.0 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 0.752009 TCGACGGAATCCAGCTAGCT 60.752 55.000 12.68 12.68 0.00 3.32
371 378 1.010935 CAGCGACGCAGACATGAACT 61.011 55.000 23.70 0.00 0.00 3.01
452 459 2.203280 CCGGCGGAATAATGGGCA 60.203 61.111 24.41 0.00 0.00 5.36
636 655 3.244911 ACACCAACGGAATTCCATCTTCT 60.245 43.478 24.09 0.00 35.14 2.85
638 657 4.010349 ACCAACGGAATTCCATCTTCTTC 58.990 43.478 24.09 0.00 35.14 2.87
641 660 5.163713 CCAACGGAATTCCATCTTCTTCTTC 60.164 44.000 24.09 0.00 35.14 2.87
642 661 5.428184 ACGGAATTCCATCTTCTTCTTCT 57.572 39.130 24.09 0.00 35.14 2.85
643 662 5.810095 ACGGAATTCCATCTTCTTCTTCTT 58.190 37.500 24.09 0.00 35.14 2.52
644 663 5.877564 ACGGAATTCCATCTTCTTCTTCTTC 59.122 40.000 24.09 0.00 35.14 2.87
645 664 5.295540 CGGAATTCCATCTTCTTCTTCTTCC 59.704 44.000 24.09 0.00 35.14 3.46
646 665 6.422333 GGAATTCCATCTTCTTCTTCTTCCT 58.578 40.000 20.04 0.00 35.64 3.36
647 666 6.889177 GGAATTCCATCTTCTTCTTCTTCCTT 59.111 38.462 20.04 0.00 35.64 3.36
690 709 1.748122 CATCTGTGCAGGCCAGGAC 60.748 63.158 13.13 13.13 0.00 3.85
745 764 2.941064 CACTGATTGCTGATTCCGTGAT 59.059 45.455 0.00 0.00 0.00 3.06
747 766 4.025396 CACTGATTGCTGATTCCGTGATAC 60.025 45.833 0.00 0.00 0.00 2.24
748 767 3.466836 TGATTGCTGATTCCGTGATACC 58.533 45.455 0.00 0.00 0.00 2.73
749 768 1.934589 TTGCTGATTCCGTGATACCG 58.065 50.000 0.00 0.00 0.00 4.02
836 889 9.274065 GAATTAGGTTTACGACAATTGTTGATC 57.726 33.333 28.80 15.70 33.65 2.92
891 944 2.431260 GAAGTTCGTACGCGGCCA 60.431 61.111 12.47 0.00 38.89 5.36
892 945 2.723719 GAAGTTCGTACGCGGCCAC 61.724 63.158 12.47 4.19 38.89 5.01
931 984 3.255379 GCGCCTCGACGGATTGTC 61.255 66.667 0.00 0.00 44.53 3.18
1028 1089 2.947785 ACCCCGTCTCCTCCTCCT 60.948 66.667 0.00 0.00 0.00 3.69
1029 1090 2.123640 CCCCGTCTCCTCCTCCTC 60.124 72.222 0.00 0.00 0.00 3.71
1030 1091 2.123640 CCCGTCTCCTCCTCCTCC 60.124 72.222 0.00 0.00 0.00 4.30
1039 1100 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
1902 1973 2.520982 CTCTCCCGCGACCCCATA 60.521 66.667 8.23 0.00 0.00 2.74
2100 2171 1.433471 CGGCATGTCGCTCTACTCA 59.567 57.895 6.84 0.00 41.91 3.41
2178 2249 2.974698 AGCAACGCGAGCAAGCTT 60.975 55.556 24.88 0.00 32.95 3.74
2364 2435 4.767255 CACCTGCTCCCTGCGGTC 62.767 72.222 0.00 0.00 46.27 4.79
2544 2615 1.741770 GCTGAAGCCGGACGTGATT 60.742 57.895 5.05 0.00 34.31 2.57
2553 2624 2.818274 GACGTGATTGGACCGGGC 60.818 66.667 6.32 0.21 0.00 6.13
2563 2634 2.264794 GACCGGGCGTGAACATCT 59.735 61.111 6.32 0.00 0.00 2.90
2700 2771 2.496070 TCTTGAGGATTGTACTGACCGG 59.504 50.000 0.00 0.00 0.00 5.28
2860 2931 3.752747 TCGCAATGCCATGATAGTAATGG 59.247 43.478 0.00 0.00 46.29 3.16
2887 2958 1.500512 TAGGCACGCGTTTTGGTGAC 61.501 55.000 10.22 0.00 42.61 3.67
2989 3063 4.783621 TGCCCTCACATCAGCGGC 62.784 66.667 0.00 0.00 40.16 6.53
3046 3120 2.825836 CCCAGCGCCATCAAGTCC 60.826 66.667 2.29 0.00 0.00 3.85
3085 3159 4.955774 ACCGTCGACAACACCGGC 62.956 66.667 17.16 0.00 44.14 6.13
3670 3744 3.119673 TGGGCGAGTAAAATTCGTACGTA 60.120 43.478 16.05 6.02 40.08 3.57
3790 3864 8.962884 AAAAAGAGACAAGGCAATTAATTGTT 57.037 26.923 25.15 12.73 37.29 2.83
3792 3866 8.593492 AAAGAGACAAGGCAATTAATTGTTTC 57.407 30.769 25.15 16.36 37.29 2.78
3793 3867 7.288810 AGAGACAAGGCAATTAATTGTTTCA 57.711 32.000 25.15 0.00 39.33 2.69
3794 3868 7.373493 AGAGACAAGGCAATTAATTGTTTCAG 58.627 34.615 25.15 15.51 39.33 3.02
3926 4006 5.686159 ATCAAGAAGCAGACACTTCAAAG 57.314 39.130 7.01 0.00 46.97 2.77
4110 6073 5.414454 GGTTGAACTATGGTTGAACTATGCA 59.586 40.000 20.20 0.00 44.74 3.96
4116 6079 5.819379 ACTATGGTTGAACTATGCATGAGTG 59.181 40.000 10.16 0.00 0.00 3.51
4242 6205 1.806542 CCCACATCACACACAGCTTAC 59.193 52.381 0.00 0.00 0.00 2.34
4258 6221 2.784380 GCTTACTAGCGTGAATCGTCTG 59.216 50.000 0.00 0.00 42.13 3.51
4270 6233 5.164129 CGTGAATCGTCTGTGTTATTTTCGA 60.164 40.000 0.00 0.00 34.52 3.71
4299 6262 9.914834 TTCCCACATAATTTTATACTAGCAACT 57.085 29.630 0.00 0.00 0.00 3.16
4318 6281 1.606668 CTGTTTACCCACAACACGCAT 59.393 47.619 0.00 0.00 30.83 4.73
4323 6286 0.250727 ACCCACAACACGCATAGCTT 60.251 50.000 0.00 0.00 0.00 3.74
4324 6287 1.002659 ACCCACAACACGCATAGCTTA 59.997 47.619 0.00 0.00 0.00 3.09
4325 6288 2.288666 CCCACAACACGCATAGCTTAT 58.711 47.619 0.00 0.00 0.00 1.73
4326 6289 2.032054 CCCACAACACGCATAGCTTATG 59.968 50.000 0.00 0.00 39.18 1.90
4327 6290 2.677836 CCACAACACGCATAGCTTATGT 59.322 45.455 0.00 0.00 38.43 2.29
4334 6297 3.867055 CGCATAGCTTATGTGTGAAGG 57.133 47.619 0.00 0.00 40.76 3.46
4335 6298 2.545526 CGCATAGCTTATGTGTGAAGGG 59.454 50.000 0.00 0.00 40.76 3.95
4336 6299 3.545703 GCATAGCTTATGTGTGAAGGGT 58.454 45.455 0.00 0.00 38.43 4.34
4337 6300 3.947834 GCATAGCTTATGTGTGAAGGGTT 59.052 43.478 0.00 0.00 38.43 4.11
4338 6301 4.201950 GCATAGCTTATGTGTGAAGGGTTG 60.202 45.833 0.00 0.00 38.43 3.77
4339 6302 2.795329 AGCTTATGTGTGAAGGGTTGG 58.205 47.619 0.00 0.00 0.00 3.77
4340 6303 1.202348 GCTTATGTGTGAAGGGTTGGC 59.798 52.381 0.00 0.00 0.00 4.52
4341 6304 2.513753 CTTATGTGTGAAGGGTTGGCA 58.486 47.619 0.00 0.00 0.00 4.92
4342 6305 2.666272 TATGTGTGAAGGGTTGGCAA 57.334 45.000 0.00 0.00 0.00 4.52
4343 6306 1.786937 ATGTGTGAAGGGTTGGCAAA 58.213 45.000 0.00 0.00 0.00 3.68
4344 6307 1.561643 TGTGTGAAGGGTTGGCAAAA 58.438 45.000 0.00 0.00 0.00 2.44
4345 6308 1.902508 TGTGTGAAGGGTTGGCAAAAA 59.097 42.857 0.00 0.00 0.00 1.94
4420 6383 2.420967 GGTGGATGTTTAGCGTGGGTAT 60.421 50.000 0.00 0.00 0.00 2.73
4421 6384 3.275999 GTGGATGTTTAGCGTGGGTATT 58.724 45.455 0.00 0.00 0.00 1.89
4422 6385 3.692593 GTGGATGTTTAGCGTGGGTATTT 59.307 43.478 0.00 0.00 0.00 1.40
4494 6459 3.791953 TTTTCCCAGATTGGAACCGTA 57.208 42.857 0.00 0.00 43.97 4.02
4519 6484 3.498018 TGATGACTTTCATTGTGTCGTGG 59.502 43.478 0.00 0.00 37.20 4.94
4522 6487 2.226437 GACTTTCATTGTGTCGTGGCAT 59.774 45.455 0.00 0.00 0.00 4.40
4527 6492 1.803555 CATTGTGTCGTGGCATGTGTA 59.196 47.619 6.60 0.00 0.00 2.90
4531 6496 2.073056 GTGTCGTGGCATGTGTATTCA 58.927 47.619 6.60 0.00 0.00 2.57
4537 6502 4.217334 TCGTGGCATGTGTATTCAAATTGT 59.783 37.500 6.60 0.00 0.00 2.71
4539 6504 5.468592 GTGGCATGTGTATTCAAATTGTCA 58.531 37.500 0.00 0.00 0.00 3.58
4571 6536 0.948623 CACGGATTGGACGTCTGCAA 60.949 55.000 16.46 12.40 43.58 4.08
4603 6568 1.132453 CACAGATCGAACGCTAGTCCA 59.868 52.381 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.205893 GACGCACTTCCTCATCCTTCT 59.794 52.381 0.00 0.00 0.00 2.85
7 8 0.965866 TCGACGCACTTCCTCATCCT 60.966 55.000 0.00 0.00 0.00 3.24
10 11 1.154016 CGTCGACGCACTTCCTCAT 60.154 57.895 26.59 0.00 0.00 2.90
11 12 2.254350 CGTCGACGCACTTCCTCA 59.746 61.111 26.59 0.00 0.00 3.86
656 675 5.163663 GCACAGATGGAAATCCGTTTATTCA 60.164 40.000 0.00 0.00 39.43 2.57
668 687 0.609957 CTGGCCTGCACAGATGGAAA 60.610 55.000 3.32 0.00 38.20 3.13
745 764 2.263227 CCACATGTCACGGCGGTA 59.737 61.111 13.24 0.00 0.00 4.02
747 766 3.118454 GTCCACATGTCACGGCGG 61.118 66.667 13.24 0.00 0.00 6.13
748 767 3.478394 CGTCCACATGTCACGGCG 61.478 66.667 16.04 4.80 0.00 6.46
749 768 3.788766 GCGTCCACATGTCACGGC 61.789 66.667 22.28 13.79 34.04 5.68
891 944 5.992217 GCTCGATTCAAATATAGAACCAGGT 59.008 40.000 0.00 0.00 0.00 4.00
892 945 5.119279 CGCTCGATTCAAATATAGAACCAGG 59.881 44.000 0.00 0.00 0.00 4.45
897 950 4.883083 AGGCGCTCGATTCAAATATAGAA 58.117 39.130 7.64 0.00 0.00 2.10
999 1060 2.990967 CGGGGTGGTTGCTGCATT 60.991 61.111 1.84 0.00 0.00 3.56
1028 1089 1.938596 AGGCAGAGGAGGAGGAGGA 60.939 63.158 0.00 0.00 0.00 3.71
1029 1090 1.457455 GAGGCAGAGGAGGAGGAGG 60.457 68.421 0.00 0.00 0.00 4.30
1030 1091 1.827789 CGAGGCAGAGGAGGAGGAG 60.828 68.421 0.00 0.00 0.00 3.69
1986 2057 2.111043 CACGGGGCAGTGTTCACT 59.889 61.111 0.00 0.00 37.35 3.41
2100 2171 3.321648 TCACACAGCCCATCGCCT 61.322 61.111 0.00 0.00 38.78 5.52
2113 2184 1.068588 CAGAGGGAACTTGTCGTCACA 59.931 52.381 0.00 0.00 44.43 3.58
2544 2615 3.599285 GATGTTCACGCCCGGTCCA 62.599 63.158 0.00 0.00 0.00 4.02
2553 2624 2.398554 CCCGGCCAAGATGTTCACG 61.399 63.158 2.24 0.00 0.00 4.35
2700 2771 5.795441 GTCCATATTTTCAAGAAAGACGTGC 59.205 40.000 0.00 0.00 0.00 5.34
2860 2931 4.166011 CGCGTGCCTAAAGCCTGC 62.166 66.667 0.00 0.00 42.71 4.85
2887 2958 6.376864 TCAGTCATACTGGAGAGAAAGAGAAG 59.623 42.308 7.18 0.00 45.94 2.85
2913 2987 2.526304 TGCAGCTCGAGTTTGTAAGT 57.474 45.000 15.13 0.00 0.00 2.24
3220 3294 3.240134 GACGGTGCAGAGGAAGGCA 62.240 63.158 0.00 0.00 37.77 4.75
3642 3716 3.374745 GAATTTTACTCGCCCATGCATG 58.625 45.455 20.19 20.19 37.32 4.06
3770 3844 6.587608 CCTGAAACAATTAATTGCCTTGTCTC 59.412 38.462 24.82 12.55 41.38 3.36
3771 3845 6.458210 CCTGAAACAATTAATTGCCTTGTCT 58.542 36.000 24.82 4.01 41.38 3.41
3774 3848 4.937015 CCCCTGAAACAATTAATTGCCTTG 59.063 41.667 24.82 12.86 41.38 3.61
3780 3854 5.598754 TCCCATCCCCTGAAACAATTAATT 58.401 37.500 0.00 0.00 0.00 1.40
3784 3858 3.173151 GTTCCCATCCCCTGAAACAATT 58.827 45.455 0.00 0.00 0.00 2.32
3785 3859 2.111613 TGTTCCCATCCCCTGAAACAAT 59.888 45.455 0.00 0.00 0.00 2.71
3787 3861 1.075374 CTGTTCCCATCCCCTGAAACA 59.925 52.381 0.00 0.00 0.00 2.83
3789 3863 0.039618 GCTGTTCCCATCCCCTGAAA 59.960 55.000 0.00 0.00 0.00 2.69
3790 3864 1.139498 TGCTGTTCCCATCCCCTGAA 61.139 55.000 0.00 0.00 0.00 3.02
3792 3866 1.379044 GTGCTGTTCCCATCCCCTG 60.379 63.158 0.00 0.00 0.00 4.45
3793 3867 1.217057 ATGTGCTGTTCCCATCCCCT 61.217 55.000 0.00 0.00 0.00 4.79
3794 3868 0.324645 AATGTGCTGTTCCCATCCCC 60.325 55.000 0.00 0.00 0.00 4.81
3836 3916 8.179509 TCTATAGGCAGTGAGGAAATTACTAC 57.820 38.462 0.00 0.00 0.00 2.73
3926 4006 5.830000 ACCAGAGGTTAGTTTTGTGTTTC 57.170 39.130 0.00 0.00 27.29 2.78
3998 5802 3.606687 ACCATAGTTCAATTCCACGTCC 58.393 45.455 0.00 0.00 0.00 4.79
4110 6073 6.369890 CAGGCATAGATAATAAACGCACTCAT 59.630 38.462 0.00 0.00 0.00 2.90
4116 6079 7.464710 GCATACTCAGGCATAGATAATAAACGC 60.465 40.741 0.00 0.00 0.00 4.84
4242 6205 2.264109 ACACAGACGATTCACGCTAG 57.736 50.000 0.00 0.00 46.94 3.42
4248 6211 6.811665 AGATCGAAAATAACACAGACGATTCA 59.188 34.615 0.00 0.00 38.71 2.57
4258 6221 5.873179 TGTGGGAAGATCGAAAATAACAC 57.127 39.130 0.00 0.00 0.00 3.32
4299 6262 1.681538 ATGCGTGTTGTGGGTAAACA 58.318 45.000 0.00 0.00 35.22 2.83
4318 6281 3.872240 GCCAACCCTTCACACATAAGCTA 60.872 47.826 0.00 0.00 0.00 3.32
4323 6286 2.666272 TTGCCAACCCTTCACACATA 57.334 45.000 0.00 0.00 0.00 2.29
4324 6287 1.786937 TTTGCCAACCCTTCACACAT 58.213 45.000 0.00 0.00 0.00 3.21
4325 6288 1.561643 TTTTGCCAACCCTTCACACA 58.438 45.000 0.00 0.00 0.00 3.72
4326 6289 2.682155 TTTTTGCCAACCCTTCACAC 57.318 45.000 0.00 0.00 0.00 3.82
4342 6305 4.522114 CCAAACCTCCACACCAAATTTTT 58.478 39.130 0.00 0.00 0.00 1.94
4343 6306 3.684130 GCCAAACCTCCACACCAAATTTT 60.684 43.478 0.00 0.00 0.00 1.82
4344 6307 2.158827 GCCAAACCTCCACACCAAATTT 60.159 45.455 0.00 0.00 0.00 1.82
4345 6308 1.416030 GCCAAACCTCCACACCAAATT 59.584 47.619 0.00 0.00 0.00 1.82
4346 6309 1.047801 GCCAAACCTCCACACCAAAT 58.952 50.000 0.00 0.00 0.00 2.32
4347 6310 0.324738 TGCCAAACCTCCACACCAAA 60.325 50.000 0.00 0.00 0.00 3.28
4348 6311 0.324738 TTGCCAAACCTCCACACCAA 60.325 50.000 0.00 0.00 0.00 3.67
4349 6312 0.324738 TTTGCCAAACCTCCACACCA 60.325 50.000 0.00 0.00 0.00 4.17
4350 6313 0.827368 TTTTGCCAAACCTCCACACC 59.173 50.000 0.00 0.00 0.00 4.16
4351 6314 2.682155 TTTTTGCCAAACCTCCACAC 57.318 45.000 0.00 0.00 0.00 3.82
4373 6336 6.449635 AATATGCACCATACGTGTTCAAAT 57.550 33.333 0.00 0.00 44.97 2.32
4374 6337 5.888691 AATATGCACCATACGTGTTCAAA 57.111 34.783 0.00 0.00 44.97 2.69
4375 6338 5.525745 CCTAATATGCACCATACGTGTTCAA 59.474 40.000 0.00 0.00 44.97 2.69
4420 6383 4.088056 TGTCGGTTGACCCTGAAATAAA 57.912 40.909 0.00 0.00 44.86 1.40
4421 6384 3.773418 TGTCGGTTGACCCTGAAATAA 57.227 42.857 0.00 0.00 44.86 1.40
4422 6385 3.773418 TTGTCGGTTGACCCTGAAATA 57.227 42.857 0.00 0.00 44.86 1.40
4494 6459 4.756642 ACGACACAATGAAAGTCATCACAT 59.243 37.500 0.00 0.00 35.76 3.21
4519 6484 7.409661 CGTTCTTGACAATTTGAATACACATGC 60.410 37.037 2.79 0.00 0.00 4.06
4522 6487 5.912396 GCGTTCTTGACAATTTGAATACACA 59.088 36.000 2.79 0.00 0.00 3.72
4527 6492 5.163513 GGATGCGTTCTTGACAATTTGAAT 58.836 37.500 2.79 0.00 0.00 2.57
4531 6496 2.231235 GGGGATGCGTTCTTGACAATTT 59.769 45.455 0.00 0.00 0.00 1.82
4537 6502 1.375396 CGTGGGGATGCGTTCTTGA 60.375 57.895 0.00 0.00 0.00 3.02
4539 6504 2.046314 CCGTGGGGATGCGTTCTT 60.046 61.111 0.00 0.00 34.06 2.52
4571 6536 3.538591 TCGATCTGTGTACATCCTACGT 58.461 45.455 0.00 0.00 0.00 3.57
4603 6568 0.389391 CTTCGGTGCGAGGGTGATAT 59.611 55.000 0.00 0.00 37.14 1.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.