Multiple sequence alignment - TraesCS5B01G208800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G208800 chr5B 100.000 3941 0 0 1 3941 378813604 378817544 0.000000e+00 7278.0
1 TraesCS5B01G208800 chr5B 85.714 1498 156 39 1464 2928 595658027 595659499 0.000000e+00 1528.0
2 TraesCS5B01G208800 chr5B 94.286 35 2 0 39 73 681197490 681197456 2.000000e-03 54.7
3 TraesCS5B01G208800 chr5A 91.570 2835 155 35 553 3350 430248729 430245942 0.000000e+00 3834.0
4 TraesCS5B01G208800 chr5A 88.077 1040 96 16 1910 2928 606159169 606160201 0.000000e+00 1208.0
5 TraesCS5B01G208800 chr5A 91.751 594 31 10 3351 3941 430245902 430245324 0.000000e+00 809.0
6 TraesCS5B01G208800 chr5A 94.348 230 13 0 1464 1693 606158763 606158992 1.740000e-93 353.0
7 TraesCS5B01G208800 chr5A 76.509 613 87 30 1479 2056 566632224 566631634 8.340000e-72 281.0
8 TraesCS5B01G208800 chr5A 87.912 91 11 0 2393 2483 566631632 566631542 1.500000e-19 108.0
9 TraesCS5B01G208800 chr5D 93.778 1559 74 11 1720 3259 326368921 326370475 0.000000e+00 2320.0
10 TraesCS5B01G208800 chr5D 90.112 1335 71 26 407 1722 326367506 326368798 0.000000e+00 1677.0
11 TraesCS5B01G208800 chr5D 85.279 1148 123 28 1819 2928 484573825 484574964 0.000000e+00 1142.0
12 TraesCS5B01G208800 chr5D 87.311 331 28 11 1464 1791 484573264 484573583 2.240000e-97 366.0
13 TraesCS5B01G208800 chr5D 87.654 243 17 9 3699 3941 326372749 326372978 1.800000e-68 270.0
14 TraesCS5B01G208800 chr5D 90.909 88 5 1 999 1083 484572616 484572703 8.950000e-22 115.0
15 TraesCS5B01G208800 chr2A 84.454 476 63 5 2463 2928 36672841 36672367 3.590000e-125 459.0
16 TraesCS5B01G208800 chr2D 83.958 480 57 12 2463 2928 33878229 33878702 3.610000e-120 442.0
17 TraesCS5B01G208800 chr2B 83.193 476 68 7 2463 2928 55913163 55913636 3.640000e-115 425.0
18 TraesCS5B01G208800 chr2B 82.353 476 72 6 2463 2928 55923787 55924260 1.710000e-108 403.0
19 TraesCS5B01G208800 chr2B 86.813 91 12 0 2393 2483 29474343 29474433 6.970000e-18 102.0
20 TraesCS5B01G208800 chr3B 83.777 376 51 9 3 374 559974021 559973652 8.110000e-92 348.0
21 TraesCS5B01G208800 chr4A 79.287 449 64 19 1464 1910 594022061 594022482 1.790000e-73 287.0
22 TraesCS5B01G208800 chr4A 88.835 206 23 0 1479 1684 716529595 716529390 1.820000e-63 254.0
23 TraesCS5B01G208800 chr4A 100.000 30 0 0 340 369 136885831 136885860 5.500000e-04 56.5
24 TraesCS5B01G208800 chr1A 79.724 434 59 17 1479 1910 554112981 554112575 1.790000e-73 287.0
25 TraesCS5B01G208800 chr3D 97.015 67 2 0 2393 2459 404558967 404558901 3.220000e-21 113.0
26 TraesCS5B01G208800 chr3A 97.015 67 2 0 2393 2459 402138393 402138459 3.220000e-21 113.0
27 TraesCS5B01G208800 chr4B 85.849 106 6 5 1959 2059 626386895 626386996 1.940000e-18 104.0
28 TraesCS5B01G208800 chr1D 100.000 30 0 0 348 377 26254882 26254911 5.500000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G208800 chr5B 378813604 378817544 3940 False 7278.000000 7278 100.000000 1 3941 1 chr5B.!!$F1 3940
1 TraesCS5B01G208800 chr5B 595658027 595659499 1472 False 1528.000000 1528 85.714000 1464 2928 1 chr5B.!!$F2 1464
2 TraesCS5B01G208800 chr5A 430245324 430248729 3405 True 2321.500000 3834 91.660500 553 3941 2 chr5A.!!$R1 3388
3 TraesCS5B01G208800 chr5A 606158763 606160201 1438 False 780.500000 1208 91.212500 1464 2928 2 chr5A.!!$F1 1464
4 TraesCS5B01G208800 chr5D 326367506 326372978 5472 False 1422.333333 2320 90.514667 407 3941 3 chr5D.!!$F1 3534
5 TraesCS5B01G208800 chr5D 484572616 484574964 2348 False 541.000000 1142 87.833000 999 2928 3 chr5D.!!$F2 1929

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
317 318 0.033306 GAGGAGAGGGACGGTAGGTT 60.033 60.0 0.00 0.00 0.0 3.50 F
318 319 0.033306 AGGAGAGGGACGGTAGGTTC 60.033 60.0 0.00 0.00 0.0 3.62 F
319 320 0.033306 GGAGAGGGACGGTAGGTTCT 60.033 60.0 0.00 0.00 0.0 3.01 F
330 331 0.038892 GTAGGTTCTCAACGTCGCCA 60.039 55.0 0.00 0.00 0.0 5.69 F
331 332 0.038892 TAGGTTCTCAACGTCGCCAC 60.039 55.0 0.00 0.00 0.0 5.01 F
405 406 0.106149 AACCGACGTCTGCCTTTCTT 59.894 50.0 14.70 0.00 0.0 2.52 F
612 623 0.257616 AAGACCTAGCGCTCTCTCCT 59.742 55.0 16.34 2.97 0.0 3.69 F
716 727 0.468029 CCCAGCCTCTCCTCTCTCTC 60.468 65.0 0.00 0.00 0.0 3.20 F
717 728 0.552848 CCAGCCTCTCCTCTCTCTCT 59.447 60.0 0.00 0.00 0.0 3.10 F
1834 2446 0.796927 GGCGACTTTCTAAGCACCAC 59.203 55.0 0.00 0.00 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1477 1748 1.815003 CTTGCCATTCTCAACCTGGAC 59.185 52.381 0.00 0.00 31.38 4.02 R
1846 2458 3.190118 GCAGACATGGAAAGAGTTTCTGG 59.810 47.826 0.00 0.00 39.59 3.86 R
1848 2460 4.363991 AGCAGACATGGAAAGAGTTTCT 57.636 40.909 0.00 0.00 39.59 2.52 R
1948 2572 7.453393 TCTTCTTTGAATGAGAACCATACTGT 58.547 34.615 0.00 0.00 34.45 3.55 R
2391 3033 4.837860 ACCAGCTCCATTCTAGGAATAGAG 59.162 45.833 9.98 9.98 37.20 2.43 R
2526 3168 0.380378 GAGCAAACGCCAGTTGTTCA 59.620 50.000 0.00 0.00 41.05 3.18 R
2536 3178 2.031682 ACAAAGTCTGATGAGCAAACGC 60.032 45.455 0.00 0.00 0.00 4.84 R
2693 3342 4.527816 TGCTTGCCTTCAACTGGATTATTT 59.472 37.500 0.00 0.00 0.00 1.40 R
2764 3415 4.655762 ATTCGAACTACAGCTGCTGATA 57.344 40.909 34.28 20.49 35.18 2.15 R
3744 6321 0.394192 CTGCTATGCCGGGAAGATGA 59.606 55.000 0.00 0.00 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.922171 AATCATCCACCTGAGTTCCTC 57.078 47.619 0.00 0.00 0.00 3.71
22 23 1.573108 TCATCCACCTGAGTTCCTCC 58.427 55.000 0.00 0.00 0.00 4.30
23 24 1.079490 TCATCCACCTGAGTTCCTCCT 59.921 52.381 0.00 0.00 0.00 3.69
24 25 1.484240 CATCCACCTGAGTTCCTCCTC 59.516 57.143 0.00 0.00 0.00 3.71
25 26 0.612174 TCCACCTGAGTTCCTCCTCG 60.612 60.000 0.00 0.00 34.04 4.63
26 27 1.608717 CCACCTGAGTTCCTCCTCGG 61.609 65.000 0.00 0.00 37.55 4.63
27 28 1.985116 ACCTGAGTTCCTCCTCGGC 60.985 63.158 0.00 0.00 36.66 5.54
28 29 1.684049 CCTGAGTTCCTCCTCGGCT 60.684 63.158 0.00 0.00 36.66 5.52
29 30 1.515020 CTGAGTTCCTCCTCGGCTG 59.485 63.158 0.00 0.00 34.04 4.85
30 31 1.954362 CTGAGTTCCTCCTCGGCTGG 61.954 65.000 0.00 0.00 34.04 4.85
31 32 3.378399 GAGTTCCTCCTCGGCTGGC 62.378 68.421 0.00 0.00 0.00 4.85
32 33 4.821589 GTTCCTCCTCGGCTGGCG 62.822 72.222 18.26 18.26 0.00 5.69
38 39 4.923942 CCTCGGCTGGCGCATCAT 62.924 66.667 19.55 0.00 38.10 2.45
39 40 3.344215 CTCGGCTGGCGCATCATC 61.344 66.667 19.55 0.00 38.10 2.92
40 41 4.159901 TCGGCTGGCGCATCATCA 62.160 61.111 19.55 0.00 38.10 3.07
41 42 2.976350 CGGCTGGCGCATCATCAT 60.976 61.111 11.55 0.00 38.10 2.45
42 43 2.952245 GGCTGGCGCATCATCATC 59.048 61.111 10.83 0.00 38.10 2.92
43 44 2.623915 GGCTGGCGCATCATCATCC 61.624 63.158 10.83 0.00 38.10 3.51
44 45 1.600076 GCTGGCGCATCATCATCCT 60.600 57.895 10.83 0.00 35.78 3.24
45 46 1.575576 GCTGGCGCATCATCATCCTC 61.576 60.000 10.83 0.00 35.78 3.71
46 47 0.250166 CTGGCGCATCATCATCCTCA 60.250 55.000 10.83 0.00 0.00 3.86
47 48 0.180878 TGGCGCATCATCATCCTCAA 59.819 50.000 10.83 0.00 0.00 3.02
48 49 1.311859 GGCGCATCATCATCCTCAAA 58.688 50.000 10.83 0.00 0.00 2.69
49 50 1.266175 GGCGCATCATCATCCTCAAAG 59.734 52.381 10.83 0.00 0.00 2.77
50 51 2.216046 GCGCATCATCATCCTCAAAGA 58.784 47.619 0.30 0.00 0.00 2.52
51 52 2.812591 GCGCATCATCATCCTCAAAGAT 59.187 45.455 0.30 0.00 0.00 2.40
52 53 3.120269 GCGCATCATCATCCTCAAAGATC 60.120 47.826 0.30 0.00 0.00 2.75
53 54 4.062991 CGCATCATCATCCTCAAAGATCA 58.937 43.478 0.00 0.00 0.00 2.92
54 55 4.083961 CGCATCATCATCCTCAAAGATCAC 60.084 45.833 0.00 0.00 0.00 3.06
55 56 4.820173 GCATCATCATCCTCAAAGATCACA 59.180 41.667 0.00 0.00 0.00 3.58
56 57 5.473846 GCATCATCATCCTCAAAGATCACAT 59.526 40.000 0.00 0.00 0.00 3.21
57 58 6.348622 GCATCATCATCCTCAAAGATCACATC 60.349 42.308 0.00 0.00 0.00 3.06
58 59 6.243216 TCATCATCCTCAAAGATCACATCA 57.757 37.500 0.00 0.00 0.00 3.07
59 60 6.838382 TCATCATCCTCAAAGATCACATCAT 58.162 36.000 0.00 0.00 0.00 2.45
60 61 6.935208 TCATCATCCTCAAAGATCACATCATC 59.065 38.462 0.00 0.00 0.00 2.92
61 62 6.496144 TCATCCTCAAAGATCACATCATCT 57.504 37.500 0.00 0.00 34.34 2.90
62 63 7.607615 TCATCCTCAAAGATCACATCATCTA 57.392 36.000 0.00 0.00 32.46 1.98
63 64 7.668492 TCATCCTCAAAGATCACATCATCTAG 58.332 38.462 0.00 0.00 32.46 2.43
64 65 6.416631 TCCTCAAAGATCACATCATCTAGG 57.583 41.667 0.00 0.00 32.46 3.02
65 66 5.901853 TCCTCAAAGATCACATCATCTAGGT 59.098 40.000 0.00 0.00 31.69 3.08
66 67 6.041409 TCCTCAAAGATCACATCATCTAGGTC 59.959 42.308 0.00 0.00 31.69 3.85
67 68 6.041865 CCTCAAAGATCACATCATCTAGGTCT 59.958 42.308 0.00 0.00 32.46 3.85
68 69 7.418827 CCTCAAAGATCACATCATCTAGGTCTT 60.419 40.741 0.00 0.00 32.46 3.01
69 70 7.495901 TCAAAGATCACATCATCTAGGTCTTC 58.504 38.462 0.00 0.00 32.46 2.87
70 71 7.344093 TCAAAGATCACATCATCTAGGTCTTCT 59.656 37.037 0.00 0.00 32.46 2.85
71 72 7.673641 AAGATCACATCATCTAGGTCTTCTT 57.326 36.000 0.00 0.00 32.46 2.52
72 73 7.288810 AGATCACATCATCTAGGTCTTCTTC 57.711 40.000 0.00 0.00 30.84 2.87
73 74 5.860941 TCACATCATCTAGGTCTTCTTCC 57.139 43.478 0.00 0.00 0.00 3.46
74 75 5.523588 TCACATCATCTAGGTCTTCTTCCT 58.476 41.667 0.00 0.00 38.91 3.36
75 76 5.960811 TCACATCATCTAGGTCTTCTTCCTT 59.039 40.000 0.00 0.00 36.60 3.36
76 77 6.441924 TCACATCATCTAGGTCTTCTTCCTTT 59.558 38.462 0.00 0.00 36.60 3.11
77 78 7.619698 TCACATCATCTAGGTCTTCTTCCTTTA 59.380 37.037 0.00 0.00 36.60 1.85
78 79 7.925483 CACATCATCTAGGTCTTCTTCCTTTAG 59.075 40.741 0.00 0.00 36.60 1.85
79 80 6.472686 TCATCTAGGTCTTCTTCCTTTAGC 57.527 41.667 0.00 0.00 36.60 3.09
80 81 4.985538 TCTAGGTCTTCTTCCTTTAGCG 57.014 45.455 0.00 0.00 36.60 4.26
81 82 2.388310 AGGTCTTCTTCCTTTAGCGC 57.612 50.000 0.00 0.00 30.18 5.92
82 83 1.903183 AGGTCTTCTTCCTTTAGCGCT 59.097 47.619 17.26 17.26 30.18 5.92
83 84 3.097614 AGGTCTTCTTCCTTTAGCGCTA 58.902 45.455 14.45 14.45 30.18 4.26
84 85 3.131400 AGGTCTTCTTCCTTTAGCGCTAG 59.869 47.826 17.98 8.85 30.18 3.42
85 86 3.119065 GGTCTTCTTCCTTTAGCGCTAGT 60.119 47.826 17.98 0.00 0.00 2.57
86 87 4.496360 GTCTTCTTCCTTTAGCGCTAGTT 58.504 43.478 17.98 0.00 0.00 2.24
87 88 4.563580 GTCTTCTTCCTTTAGCGCTAGTTC 59.436 45.833 17.98 0.00 0.00 3.01
88 89 4.463186 TCTTCTTCCTTTAGCGCTAGTTCT 59.537 41.667 17.98 0.00 0.00 3.01
89 90 4.803098 TCTTCCTTTAGCGCTAGTTCTT 57.197 40.909 17.98 0.00 0.00 2.52
90 91 4.495422 TCTTCCTTTAGCGCTAGTTCTTG 58.505 43.478 17.98 8.46 0.00 3.02
91 92 2.618053 TCCTTTAGCGCTAGTTCTTGC 58.382 47.619 17.98 0.00 0.00 4.01
92 93 2.028476 TCCTTTAGCGCTAGTTCTTGCA 60.028 45.455 17.98 0.00 0.00 4.08
93 94 2.939103 CCTTTAGCGCTAGTTCTTGCAT 59.061 45.455 17.98 0.00 0.00 3.96
94 95 3.242543 CCTTTAGCGCTAGTTCTTGCATG 60.243 47.826 17.98 2.61 0.00 4.06
95 96 2.959507 TAGCGCTAGTTCTTGCATGA 57.040 45.000 14.45 0.00 0.00 3.07
96 97 1.649664 AGCGCTAGTTCTTGCATGAG 58.350 50.000 8.99 0.00 0.00 2.90
97 98 1.205655 AGCGCTAGTTCTTGCATGAGA 59.794 47.619 8.99 0.00 0.00 3.27
98 99 2.158986 AGCGCTAGTTCTTGCATGAGAT 60.159 45.455 8.99 0.00 0.00 2.75
99 100 2.220593 GCGCTAGTTCTTGCATGAGATC 59.779 50.000 0.00 0.00 0.00 2.75
100 101 2.799412 CGCTAGTTCTTGCATGAGATCC 59.201 50.000 0.00 0.00 0.00 3.36
101 102 3.492309 CGCTAGTTCTTGCATGAGATCCT 60.492 47.826 0.00 0.00 0.00 3.24
102 103 4.057432 GCTAGTTCTTGCATGAGATCCTC 58.943 47.826 0.00 0.00 0.00 3.71
103 104 3.557228 AGTTCTTGCATGAGATCCTCC 57.443 47.619 0.00 0.00 0.00 4.30
104 105 2.842496 AGTTCTTGCATGAGATCCTCCA 59.158 45.455 0.00 0.00 0.00 3.86
105 106 3.265221 AGTTCTTGCATGAGATCCTCCAA 59.735 43.478 0.00 0.00 0.00 3.53
106 107 3.272574 TCTTGCATGAGATCCTCCAAC 57.727 47.619 0.00 0.00 0.00 3.77
107 108 2.842496 TCTTGCATGAGATCCTCCAACT 59.158 45.455 0.00 0.00 0.00 3.16
108 109 3.265221 TCTTGCATGAGATCCTCCAACTT 59.735 43.478 0.00 0.00 0.00 2.66
109 110 3.272574 TGCATGAGATCCTCCAACTTC 57.727 47.619 0.00 0.00 0.00 3.01
110 111 2.092753 TGCATGAGATCCTCCAACTTCC 60.093 50.000 0.00 0.00 0.00 3.46
111 112 2.747799 GCATGAGATCCTCCAACTTCCC 60.748 54.545 0.00 0.00 0.00 3.97
112 113 1.584724 TGAGATCCTCCAACTTCCCC 58.415 55.000 0.00 0.00 0.00 4.81
113 114 1.081174 TGAGATCCTCCAACTTCCCCT 59.919 52.381 0.00 0.00 0.00 4.79
114 115 2.200955 GAGATCCTCCAACTTCCCCTT 58.799 52.381 0.00 0.00 0.00 3.95
115 116 2.171659 GAGATCCTCCAACTTCCCCTTC 59.828 54.545 0.00 0.00 0.00 3.46
116 117 1.213182 GATCCTCCAACTTCCCCTTCC 59.787 57.143 0.00 0.00 0.00 3.46
117 118 0.845102 TCCTCCAACTTCCCCTTCCC 60.845 60.000 0.00 0.00 0.00 3.97
118 119 1.691823 CTCCAACTTCCCCTTCCCC 59.308 63.158 0.00 0.00 0.00 4.81
119 120 0.846870 CTCCAACTTCCCCTTCCCCT 60.847 60.000 0.00 0.00 0.00 4.79
120 121 0.404346 TCCAACTTCCCCTTCCCCTT 60.404 55.000 0.00 0.00 0.00 3.95
121 122 0.251787 CCAACTTCCCCTTCCCCTTG 60.252 60.000 0.00 0.00 0.00 3.61
122 123 0.251787 CAACTTCCCCTTCCCCTTGG 60.252 60.000 0.00 0.00 0.00 3.61
123 124 2.094170 AACTTCCCCTTCCCCTTGGC 62.094 60.000 0.00 0.00 0.00 4.52
124 125 3.645268 CTTCCCCTTCCCCTTGGCG 62.645 68.421 0.00 0.00 0.00 5.69
125 126 4.995058 TCCCCTTCCCCTTGGCGT 62.995 66.667 0.00 0.00 0.00 5.68
126 127 3.979497 CCCCTTCCCCTTGGCGTT 61.979 66.667 0.00 0.00 0.00 4.84
127 128 2.117423 CCCTTCCCCTTGGCGTTT 59.883 61.111 0.00 0.00 0.00 3.60
128 129 1.977009 CCCTTCCCCTTGGCGTTTC 60.977 63.158 0.00 0.00 0.00 2.78
129 130 1.977009 CCTTCCCCTTGGCGTTTCC 60.977 63.158 0.00 0.00 0.00 3.13
130 131 1.074951 CTTCCCCTTGGCGTTTCCT 59.925 57.895 0.00 0.00 35.26 3.36
131 132 1.228429 TTCCCCTTGGCGTTTCCTG 60.228 57.895 0.00 0.00 35.26 3.86
132 133 3.373565 CCCCTTGGCGTTTCCTGC 61.374 66.667 0.00 0.00 35.26 4.85
133 134 2.597217 CCCTTGGCGTTTCCTGCA 60.597 61.111 0.00 0.00 35.26 4.41
134 135 2.629656 CCCTTGGCGTTTCCTGCAG 61.630 63.158 6.78 6.78 35.26 4.41
135 136 1.600636 CCTTGGCGTTTCCTGCAGA 60.601 57.895 17.39 0.00 35.26 4.26
136 137 0.962356 CCTTGGCGTTTCCTGCAGAT 60.962 55.000 17.39 0.00 35.26 2.90
137 138 0.169672 CTTGGCGTTTCCTGCAGATG 59.830 55.000 17.39 1.49 35.26 2.90
138 139 0.537143 TTGGCGTTTCCTGCAGATGT 60.537 50.000 17.39 0.00 35.26 3.06
139 140 1.236616 TGGCGTTTCCTGCAGATGTG 61.237 55.000 17.39 0.00 35.26 3.21
140 141 1.237285 GGCGTTTCCTGCAGATGTGT 61.237 55.000 17.39 0.00 0.00 3.72
141 142 0.166814 GCGTTTCCTGCAGATGTGTC 59.833 55.000 17.39 0.00 0.00 3.67
142 143 1.511850 CGTTTCCTGCAGATGTGTCA 58.488 50.000 17.39 0.00 0.00 3.58
143 144 1.195448 CGTTTCCTGCAGATGTGTCAC 59.805 52.381 17.39 0.00 0.00 3.67
144 145 1.537202 GTTTCCTGCAGATGTGTCACC 59.463 52.381 17.39 0.00 0.00 4.02
145 146 0.764271 TTCCTGCAGATGTGTCACCA 59.236 50.000 17.39 0.00 0.00 4.17
146 147 0.322648 TCCTGCAGATGTGTCACCAG 59.677 55.000 17.39 0.03 0.00 4.00
147 148 0.675837 CCTGCAGATGTGTCACCAGG 60.676 60.000 17.39 9.86 38.02 4.45
148 149 0.035881 CTGCAGATGTGTCACCAGGT 59.964 55.000 8.42 0.00 0.00 4.00
149 150 0.035317 TGCAGATGTGTCACCAGGTC 59.965 55.000 0.00 0.00 0.00 3.85
150 151 0.674895 GCAGATGTGTCACCAGGTCC 60.675 60.000 0.00 0.00 0.00 4.46
151 152 0.036010 CAGATGTGTCACCAGGTCCC 60.036 60.000 0.00 0.00 0.00 4.46
152 153 1.079127 GATGTGTCACCAGGTCCCG 60.079 63.158 0.00 0.00 0.00 5.14
153 154 3.254024 ATGTGTCACCAGGTCCCGC 62.254 63.158 0.00 0.00 0.00 6.13
154 155 4.699522 GTGTCACCAGGTCCCGCC 62.700 72.222 0.00 0.00 37.58 6.13
156 157 3.717294 GTCACCAGGTCCCGCCAT 61.717 66.667 0.00 0.00 40.61 4.40
157 158 2.039787 TCACCAGGTCCCGCCATA 59.960 61.111 0.00 0.00 40.61 2.74
158 159 2.063979 TCACCAGGTCCCGCCATAG 61.064 63.158 0.00 0.00 40.61 2.23
159 160 3.480133 ACCAGGTCCCGCCATAGC 61.480 66.667 0.00 0.00 40.61 2.97
160 161 4.256180 CCAGGTCCCGCCATAGCC 62.256 72.222 0.00 0.00 40.61 3.93
161 162 4.256180 CAGGTCCCGCCATAGCCC 62.256 72.222 0.00 0.00 40.61 5.19
164 165 3.804329 GTCCCGCCATAGCCCCAA 61.804 66.667 0.00 0.00 34.57 4.12
165 166 3.018193 TCCCGCCATAGCCCCAAA 61.018 61.111 0.00 0.00 34.57 3.28
166 167 2.833121 CCCGCCATAGCCCCAAAC 60.833 66.667 0.00 0.00 34.57 2.93
167 168 2.275418 CCGCCATAGCCCCAAACT 59.725 61.111 0.00 0.00 34.57 2.66
168 169 1.379843 CCGCCATAGCCCCAAACTT 60.380 57.895 0.00 0.00 34.57 2.66
169 170 0.970427 CCGCCATAGCCCCAAACTTT 60.970 55.000 0.00 0.00 34.57 2.66
170 171 1.683629 CCGCCATAGCCCCAAACTTTA 60.684 52.381 0.00 0.00 34.57 1.85
171 172 1.676006 CGCCATAGCCCCAAACTTTAG 59.324 52.381 0.00 0.00 34.57 1.85
172 173 2.031870 GCCATAGCCCCAAACTTTAGG 58.968 52.381 0.00 0.00 0.00 2.69
173 174 2.666317 CCATAGCCCCAAACTTTAGGG 58.334 52.381 0.74 0.74 45.04 3.53
174 175 2.024369 CCATAGCCCCAAACTTTAGGGT 60.024 50.000 6.85 3.88 43.89 4.34
175 176 3.565670 CCATAGCCCCAAACTTTAGGGTT 60.566 47.826 6.85 3.60 43.89 4.11
176 177 2.787339 AGCCCCAAACTTTAGGGTTT 57.213 45.000 6.85 0.00 43.89 3.27
177 178 3.054779 AGCCCCAAACTTTAGGGTTTT 57.945 42.857 6.85 0.00 43.89 2.43
178 179 3.389866 AGCCCCAAACTTTAGGGTTTTT 58.610 40.909 6.85 0.00 43.89 1.94
198 199 6.546428 TTTTTGTAGATCGATCTCCTCCTT 57.454 37.500 30.49 8.70 38.32 3.36
199 200 5.776173 TTTGTAGATCGATCTCCTCCTTC 57.224 43.478 30.49 13.45 38.32 3.46
200 201 3.757270 TGTAGATCGATCTCCTCCTTCC 58.243 50.000 30.49 10.32 38.32 3.46
201 202 2.302587 AGATCGATCTCCTCCTTCCC 57.697 55.000 22.32 0.00 29.30 3.97
202 203 1.501170 AGATCGATCTCCTCCTTCCCA 59.499 52.381 22.32 0.00 29.30 4.37
203 204 2.091055 AGATCGATCTCCTCCTTCCCAA 60.091 50.000 22.32 0.00 29.30 4.12
204 205 1.781786 TCGATCTCCTCCTTCCCAAG 58.218 55.000 0.00 0.00 0.00 3.61
205 206 7.749278 TAGATCGATCTCCTCCTTCCCAAGG 62.749 52.000 30.49 0.00 42.90 3.61
218 219 3.390175 TCCCAAGGAAGAGTAGAGAGG 57.610 52.381 0.00 0.00 0.00 3.69
219 220 2.655407 TCCCAAGGAAGAGTAGAGAGGT 59.345 50.000 0.00 0.00 0.00 3.85
220 221 3.856813 TCCCAAGGAAGAGTAGAGAGGTA 59.143 47.826 0.00 0.00 0.00 3.08
221 222 4.294168 TCCCAAGGAAGAGTAGAGAGGTAA 59.706 45.833 0.00 0.00 0.00 2.85
222 223 5.024118 CCCAAGGAAGAGTAGAGAGGTAAA 58.976 45.833 0.00 0.00 0.00 2.01
223 224 5.484290 CCCAAGGAAGAGTAGAGAGGTAAAA 59.516 44.000 0.00 0.00 0.00 1.52
224 225 6.399743 CCAAGGAAGAGTAGAGAGGTAAAAC 58.600 44.000 0.00 0.00 0.00 2.43
225 226 6.399743 CAAGGAAGAGTAGAGAGGTAAAACC 58.600 44.000 0.00 0.00 38.99 3.27
226 227 5.024785 AGGAAGAGTAGAGAGGTAAAACCC 58.975 45.833 0.00 0.00 39.75 4.11
227 228 5.024785 GGAAGAGTAGAGAGGTAAAACCCT 58.975 45.833 0.00 0.00 39.75 4.34
228 229 6.010918 AGGAAGAGTAGAGAGGTAAAACCCTA 60.011 42.308 0.00 0.00 39.75 3.53
229 230 6.666980 GGAAGAGTAGAGAGGTAAAACCCTAA 59.333 42.308 0.00 0.00 39.75 2.69
230 231 7.363705 GGAAGAGTAGAGAGGTAAAACCCTAAC 60.364 44.444 0.00 0.00 39.75 2.34
231 232 6.803017 AGAGTAGAGAGGTAAAACCCTAACT 58.197 40.000 0.00 0.00 39.75 2.24
232 233 6.891361 AGAGTAGAGAGGTAAAACCCTAACTC 59.109 42.308 14.10 14.10 39.75 3.01
233 234 5.651576 AGTAGAGAGGTAAAACCCTAACTCG 59.348 44.000 0.00 0.00 40.07 4.18
234 235 3.195182 AGAGAGGTAAAACCCTAACTCGC 59.805 47.826 0.00 0.00 40.07 5.03
235 236 3.171528 AGAGGTAAAACCCTAACTCGCT 58.828 45.455 0.00 0.00 40.07 4.93
236 237 3.195182 AGAGGTAAAACCCTAACTCGCTC 59.805 47.826 0.00 0.00 40.07 5.03
237 238 2.901839 AGGTAAAACCCTAACTCGCTCA 59.098 45.455 0.00 0.00 39.75 4.26
238 239 3.056035 AGGTAAAACCCTAACTCGCTCAG 60.056 47.826 0.00 0.00 39.75 3.35
239 240 1.809684 AAAACCCTAACTCGCTCAGC 58.190 50.000 0.00 0.00 0.00 4.26
240 241 0.036294 AAACCCTAACTCGCTCAGCC 60.036 55.000 0.00 0.00 0.00 4.85
241 242 1.900545 AACCCTAACTCGCTCAGCCC 61.901 60.000 0.00 0.00 0.00 5.19
242 243 2.501610 CCTAACTCGCTCAGCCCC 59.498 66.667 0.00 0.00 0.00 5.80
243 244 2.501610 CTAACTCGCTCAGCCCCC 59.498 66.667 0.00 0.00 0.00 5.40
244 245 2.038975 TAACTCGCTCAGCCCCCT 59.961 61.111 0.00 0.00 0.00 4.79
245 246 0.755698 CTAACTCGCTCAGCCCCCTA 60.756 60.000 0.00 0.00 0.00 3.53
246 247 0.105658 TAACTCGCTCAGCCCCCTAT 60.106 55.000 0.00 0.00 0.00 2.57
247 248 0.983378 AACTCGCTCAGCCCCCTATT 60.983 55.000 0.00 0.00 0.00 1.73
248 249 0.983378 ACTCGCTCAGCCCCCTATTT 60.983 55.000 0.00 0.00 0.00 1.40
249 250 0.250081 CTCGCTCAGCCCCCTATTTC 60.250 60.000 0.00 0.00 0.00 2.17
250 251 1.227973 CGCTCAGCCCCCTATTTCC 60.228 63.158 0.00 0.00 0.00 3.13
251 252 1.922821 GCTCAGCCCCCTATTTCCA 59.077 57.895 0.00 0.00 0.00 3.53
252 253 0.466372 GCTCAGCCCCCTATTTCCAC 60.466 60.000 0.00 0.00 0.00 4.02
253 254 0.183731 CTCAGCCCCCTATTTCCACC 59.816 60.000 0.00 0.00 0.00 4.61
254 255 1.230212 CAGCCCCCTATTTCCACCC 59.770 63.158 0.00 0.00 0.00 4.61
255 256 1.086757 AGCCCCCTATTTCCACCCT 59.913 57.895 0.00 0.00 0.00 4.34
256 257 1.230212 GCCCCCTATTTCCACCCTG 59.770 63.158 0.00 0.00 0.00 4.45
257 258 1.286305 GCCCCCTATTTCCACCCTGA 61.286 60.000 0.00 0.00 0.00 3.86
258 259 0.551396 CCCCCTATTTCCACCCTGAC 59.449 60.000 0.00 0.00 0.00 3.51
259 260 1.596496 CCCCTATTTCCACCCTGACT 58.404 55.000 0.00 0.00 0.00 3.41
260 261 1.490910 CCCCTATTTCCACCCTGACTC 59.509 57.143 0.00 0.00 0.00 3.36
261 262 1.490910 CCCTATTTCCACCCTGACTCC 59.509 57.143 0.00 0.00 0.00 3.85
262 263 1.139058 CCTATTTCCACCCTGACTCCG 59.861 57.143 0.00 0.00 0.00 4.63
263 264 2.108168 CTATTTCCACCCTGACTCCGA 58.892 52.381 0.00 0.00 0.00 4.55
264 265 1.358152 ATTTCCACCCTGACTCCGAA 58.642 50.000 0.00 0.00 0.00 4.30
265 266 0.395312 TTTCCACCCTGACTCCGAAC 59.605 55.000 0.00 0.00 0.00 3.95
266 267 1.477685 TTCCACCCTGACTCCGAACC 61.478 60.000 0.00 0.00 0.00 3.62
267 268 2.261671 CACCCTGACTCCGAACCG 59.738 66.667 0.00 0.00 0.00 4.44
268 269 3.692406 ACCCTGACTCCGAACCGC 61.692 66.667 0.00 0.00 0.00 5.68
269 270 3.691342 CCCTGACTCCGAACCGCA 61.691 66.667 0.00 0.00 0.00 5.69
270 271 2.125912 CCTGACTCCGAACCGCAG 60.126 66.667 0.00 0.00 0.00 5.18
271 272 2.811317 CTGACTCCGAACCGCAGC 60.811 66.667 0.00 0.00 0.00 5.25
272 273 4.373116 TGACTCCGAACCGCAGCC 62.373 66.667 0.00 0.00 0.00 4.85
288 289 2.348998 CCCGGGCAGAGGCATATC 59.651 66.667 8.08 0.00 43.71 1.63
289 290 2.047844 CCGGGCAGAGGCATATCG 60.048 66.667 0.00 0.00 43.71 2.92
290 291 2.047844 CGGGCAGAGGCATATCGG 60.048 66.667 0.00 0.00 43.71 4.18
291 292 2.348998 GGGCAGAGGCATATCGGG 59.651 66.667 0.00 0.00 43.71 5.14
292 293 2.520536 GGGCAGAGGCATATCGGGT 61.521 63.158 0.00 0.00 43.71 5.28
293 294 1.302033 GGCAGAGGCATATCGGGTG 60.302 63.158 0.00 0.00 43.71 4.61
294 295 1.447643 GCAGAGGCATATCGGGTGT 59.552 57.895 0.00 0.00 40.72 4.16
295 296 0.882042 GCAGAGGCATATCGGGTGTG 60.882 60.000 0.00 0.00 40.72 3.82
296 297 0.465705 CAGAGGCATATCGGGTGTGT 59.534 55.000 0.00 0.00 0.00 3.72
297 298 0.465705 AGAGGCATATCGGGTGTGTG 59.534 55.000 0.00 0.00 0.00 3.82
298 299 0.532862 GAGGCATATCGGGTGTGTGG 60.533 60.000 0.00 0.00 0.00 4.17
299 300 0.980754 AGGCATATCGGGTGTGTGGA 60.981 55.000 0.00 0.00 0.00 4.02
300 301 0.532862 GGCATATCGGGTGTGTGGAG 60.533 60.000 0.00 0.00 0.00 3.86
301 302 0.532862 GCATATCGGGTGTGTGGAGG 60.533 60.000 0.00 0.00 0.00 4.30
302 303 1.119684 CATATCGGGTGTGTGGAGGA 58.880 55.000 0.00 0.00 0.00 3.71
303 304 1.069204 CATATCGGGTGTGTGGAGGAG 59.931 57.143 0.00 0.00 0.00 3.69
304 305 0.333652 TATCGGGTGTGTGGAGGAGA 59.666 55.000 0.00 0.00 0.00 3.71
305 306 0.972983 ATCGGGTGTGTGGAGGAGAG 60.973 60.000 0.00 0.00 0.00 3.20
306 307 2.650116 CGGGTGTGTGGAGGAGAGG 61.650 68.421 0.00 0.00 0.00 3.69
307 308 2.294078 GGGTGTGTGGAGGAGAGGG 61.294 68.421 0.00 0.00 0.00 4.30
308 309 1.229209 GGTGTGTGGAGGAGAGGGA 60.229 63.158 0.00 0.00 0.00 4.20
309 310 1.545706 GGTGTGTGGAGGAGAGGGAC 61.546 65.000 0.00 0.00 0.00 4.46
310 311 1.606601 TGTGTGGAGGAGAGGGACG 60.607 63.158 0.00 0.00 0.00 4.79
311 312 2.037367 TGTGGAGGAGAGGGACGG 59.963 66.667 0.00 0.00 0.00 4.79
312 313 2.037527 GTGGAGGAGAGGGACGGT 59.962 66.667 0.00 0.00 0.00 4.83
313 314 1.305623 GTGGAGGAGAGGGACGGTA 59.694 63.158 0.00 0.00 0.00 4.02
314 315 0.752376 GTGGAGGAGAGGGACGGTAG 60.752 65.000 0.00 0.00 0.00 3.18
315 316 1.152715 GGAGGAGAGGGACGGTAGG 60.153 68.421 0.00 0.00 0.00 3.18
316 317 1.614160 GAGGAGAGGGACGGTAGGT 59.386 63.158 0.00 0.00 0.00 3.08
317 318 0.033306 GAGGAGAGGGACGGTAGGTT 60.033 60.000 0.00 0.00 0.00 3.50
318 319 0.033306 AGGAGAGGGACGGTAGGTTC 60.033 60.000 0.00 0.00 0.00 3.62
319 320 0.033306 GGAGAGGGACGGTAGGTTCT 60.033 60.000 0.00 0.00 0.00 3.01
320 321 1.391577 GAGAGGGACGGTAGGTTCTC 58.608 60.000 0.00 0.00 32.68 2.87
321 322 0.702902 AGAGGGACGGTAGGTTCTCA 59.297 55.000 0.00 0.00 34.02 3.27
322 323 1.076677 AGAGGGACGGTAGGTTCTCAA 59.923 52.381 0.00 0.00 34.02 3.02
323 324 1.204231 GAGGGACGGTAGGTTCTCAAC 59.796 57.143 0.00 0.00 32.74 3.18
324 325 0.108945 GGGACGGTAGGTTCTCAACG 60.109 60.000 0.00 0.00 0.00 4.10
325 326 0.600057 GGACGGTAGGTTCTCAACGT 59.400 55.000 0.00 0.00 37.26 3.99
326 327 1.402062 GGACGGTAGGTTCTCAACGTC 60.402 57.143 3.68 3.68 46.88 4.34
327 328 0.239347 ACGGTAGGTTCTCAACGTCG 59.761 55.000 0.00 0.00 0.00 5.12
328 329 1.069378 CGGTAGGTTCTCAACGTCGC 61.069 60.000 0.00 0.00 0.00 5.19
329 330 0.735287 GGTAGGTTCTCAACGTCGCC 60.735 60.000 0.00 0.00 0.00 5.54
330 331 0.038892 GTAGGTTCTCAACGTCGCCA 60.039 55.000 0.00 0.00 0.00 5.69
331 332 0.038892 TAGGTTCTCAACGTCGCCAC 60.039 55.000 0.00 0.00 0.00 5.01
332 333 2.315386 GGTTCTCAACGTCGCCACC 61.315 63.158 0.00 0.00 0.00 4.61
333 334 2.355363 TTCTCAACGTCGCCACCG 60.355 61.111 0.00 0.00 0.00 4.94
334 335 3.851845 TTCTCAACGTCGCCACCGG 62.852 63.158 0.00 0.00 34.56 5.28
344 345 4.803426 GCCACCGGCTGACGAGAG 62.803 72.222 3.46 0.00 46.69 3.20
351 352 3.731295 GGCTGACGAGAGGAAGAAG 57.269 57.895 0.00 0.00 0.00 2.85
352 353 1.178276 GGCTGACGAGAGGAAGAAGA 58.822 55.000 0.00 0.00 0.00 2.87
353 354 1.546476 GGCTGACGAGAGGAAGAAGAA 59.454 52.381 0.00 0.00 0.00 2.52
354 355 2.028930 GGCTGACGAGAGGAAGAAGAAA 60.029 50.000 0.00 0.00 0.00 2.52
355 356 2.990514 GCTGACGAGAGGAAGAAGAAAC 59.009 50.000 0.00 0.00 0.00 2.78
356 357 3.580731 CTGACGAGAGGAAGAAGAAACC 58.419 50.000 0.00 0.00 0.00 3.27
357 358 2.299297 TGACGAGAGGAAGAAGAAACCC 59.701 50.000 0.00 0.00 0.00 4.11
358 359 2.563620 GACGAGAGGAAGAAGAAACCCT 59.436 50.000 0.00 0.00 0.00 4.34
359 360 3.762823 GACGAGAGGAAGAAGAAACCCTA 59.237 47.826 0.00 0.00 0.00 3.53
360 361 4.158015 ACGAGAGGAAGAAGAAACCCTAA 58.842 43.478 0.00 0.00 0.00 2.69
361 362 4.021280 ACGAGAGGAAGAAGAAACCCTAAC 60.021 45.833 0.00 0.00 0.00 2.34
362 363 4.496360 GAGAGGAAGAAGAAACCCTAACG 58.504 47.826 0.00 0.00 0.00 3.18
363 364 4.158015 AGAGGAAGAAGAAACCCTAACGA 58.842 43.478 0.00 0.00 0.00 3.85
364 365 4.221041 AGAGGAAGAAGAAACCCTAACGAG 59.779 45.833 0.00 0.00 0.00 4.18
365 366 4.158015 AGGAAGAAGAAACCCTAACGAGA 58.842 43.478 0.00 0.00 0.00 4.04
366 367 4.221041 AGGAAGAAGAAACCCTAACGAGAG 59.779 45.833 0.00 0.00 0.00 3.20
367 368 4.496360 GAAGAAGAAACCCTAACGAGAGG 58.504 47.826 0.00 0.00 36.23 3.69
378 379 5.608676 CCTAACGAGAGGGAAAAACTTTC 57.391 43.478 0.00 0.00 32.39 2.62
379 380 4.454847 CCTAACGAGAGGGAAAAACTTTCC 59.545 45.833 9.29 9.29 37.86 3.13
390 391 5.957798 GGAAAAACTTTCCCCTAATAACCG 58.042 41.667 6.88 0.00 32.48 4.44
391 392 5.711506 GGAAAAACTTTCCCCTAATAACCGA 59.288 40.000 6.88 0.00 32.48 4.69
392 393 6.349611 GGAAAAACTTTCCCCTAATAACCGAC 60.350 42.308 6.88 0.00 32.48 4.79
393 394 3.531934 ACTTTCCCCTAATAACCGACG 57.468 47.619 0.00 0.00 0.00 5.12
394 395 2.833943 ACTTTCCCCTAATAACCGACGT 59.166 45.455 0.00 0.00 0.00 4.34
395 396 3.118992 ACTTTCCCCTAATAACCGACGTC 60.119 47.826 5.18 5.18 0.00 4.34
396 397 2.442236 TCCCCTAATAACCGACGTCT 57.558 50.000 14.70 0.00 0.00 4.18
397 398 2.026641 TCCCCTAATAACCGACGTCTG 58.973 52.381 14.70 9.99 0.00 3.51
398 399 1.537562 CCCCTAATAACCGACGTCTGC 60.538 57.143 14.70 0.00 0.00 4.26
399 400 1.537562 CCCTAATAACCGACGTCTGCC 60.538 57.143 14.70 0.00 0.00 4.85
400 401 1.407979 CCTAATAACCGACGTCTGCCT 59.592 52.381 14.70 0.70 0.00 4.75
401 402 2.159142 CCTAATAACCGACGTCTGCCTT 60.159 50.000 14.70 4.50 0.00 4.35
402 403 2.467566 AATAACCGACGTCTGCCTTT 57.532 45.000 14.70 0.36 0.00 3.11
403 404 2.005971 ATAACCGACGTCTGCCTTTC 57.994 50.000 14.70 0.00 0.00 2.62
404 405 0.963962 TAACCGACGTCTGCCTTTCT 59.036 50.000 14.70 0.00 0.00 2.52
405 406 0.106149 AACCGACGTCTGCCTTTCTT 59.894 50.000 14.70 0.00 0.00 2.52
416 417 2.749621 CTGCCTTTCTTAATGGAAGCGT 59.250 45.455 0.00 0.00 34.87 5.07
435 436 1.911293 TTGTCGCGAGCAAGCCATTC 61.911 55.000 10.24 0.00 0.00 2.67
455 456 2.134346 CACGGCCCAATCTTTGTTTTG 58.866 47.619 0.00 0.00 0.00 2.44
462 463 5.356751 GGCCCAATCTTTGTTTTGTCTTTTT 59.643 36.000 0.00 0.00 0.00 1.94
497 498 2.736826 GCTGAGGCCCAGACCCTAC 61.737 68.421 21.37 2.90 45.78 3.18
541 542 1.734465 GCCTGCTGTACAAGACATCAC 59.266 52.381 0.00 0.00 37.45 3.06
570 580 2.271173 GCTCCCCCTAAACCACCG 59.729 66.667 0.00 0.00 0.00 4.94
584 594 1.515521 CCACCGCTGAAAACCCTCAC 61.516 60.000 0.00 0.00 0.00 3.51
612 623 0.257616 AAGACCTAGCGCTCTCTCCT 59.742 55.000 16.34 2.97 0.00 3.69
697 708 1.690985 CACCTCCCTCTCTTCCCCC 60.691 68.421 0.00 0.00 0.00 5.40
712 723 2.445654 CCCCCAGCCTCTCCTCTC 60.446 72.222 0.00 0.00 0.00 3.20
713 724 2.695597 CCCCAGCCTCTCCTCTCT 59.304 66.667 0.00 0.00 0.00 3.10
714 725 1.457455 CCCCAGCCTCTCCTCTCTC 60.457 68.421 0.00 0.00 0.00 3.20
715 726 1.620259 CCCAGCCTCTCCTCTCTCT 59.380 63.158 0.00 0.00 0.00 3.10
716 727 0.468029 CCCAGCCTCTCCTCTCTCTC 60.468 65.000 0.00 0.00 0.00 3.20
717 728 0.552848 CCAGCCTCTCCTCTCTCTCT 59.447 60.000 0.00 0.00 0.00 3.10
753 764 2.360209 CCTCCCTCTTCTCTCCCATCTT 60.360 54.545 0.00 0.00 0.00 2.40
825 837 4.119363 GCCAGGGATGCTGCTGGA 62.119 66.667 12.68 0.00 39.19 3.86
826 838 2.192443 CCAGGGATGCTGCTGGAG 59.808 66.667 3.82 0.00 39.19 3.86
827 839 2.677289 CCAGGGATGCTGCTGGAGT 61.677 63.158 3.82 0.00 39.19 3.85
858 870 1.334599 GCGATTTTTGTGCTGGTCGAA 60.335 47.619 0.00 0.00 0.00 3.71
963 975 1.004200 AGGTGTAAACCCTTCGCCG 60.004 57.895 0.00 0.00 36.92 6.46
984 996 2.677848 GCCTCAGTCCCTTTCCCC 59.322 66.667 0.00 0.00 0.00 4.81
1097 1112 5.834742 TCGTAAGCTTATGTTACCTCCCATA 59.165 40.000 22.09 0.00 37.18 2.74
1098 1113 6.015688 TCGTAAGCTTATGTTACCTCCCATAG 60.016 42.308 22.09 0.00 37.18 2.23
1113 1133 5.338381 CCTCCCATAGTTTCTTCAGCTGTTA 60.338 44.000 14.67 2.24 0.00 2.41
1232 1258 8.470040 TTGTGATTTAGATAGGTACAACGAAC 57.530 34.615 0.00 0.00 0.00 3.95
1326 1361 9.862585 CCAGAAATTTTCCAAATAAAAGTTTCG 57.137 29.630 5.52 6.35 36.93 3.46
1477 1748 2.783135 ACCACATGTTCTACTGCTTGG 58.217 47.619 0.00 0.00 0.00 3.61
1817 2429 6.808008 TTGCTTTATAATGAGCTAGATGGC 57.192 37.500 9.88 0.00 39.60 4.40
1834 2446 0.796927 GGCGACTTTCTAAGCACCAC 59.203 55.000 0.00 0.00 0.00 4.16
1846 2458 5.974108 TCTAAGCACCACTATGAAACCTAC 58.026 41.667 0.00 0.00 0.00 3.18
1848 2460 2.910319 AGCACCACTATGAAACCTACCA 59.090 45.455 0.00 0.00 0.00 3.25
1868 2480 3.190118 CCAGAAACTCTTTCCATGTCTGC 59.810 47.826 0.00 0.00 40.54 4.26
2101 2734 3.306472 AAGTTGGCACCTAAACTTGGA 57.694 42.857 0.92 0.00 43.26 3.53
2229 2862 9.256477 CATCTTTATAGATAAGTTGGCGTGTAA 57.744 33.333 0.00 0.00 39.11 2.41
2525 3167 6.377146 GGTCATGCTAAGAAGGTAATTCCAAA 59.623 38.462 0.00 0.00 38.84 3.28
2526 3168 7.068716 GGTCATGCTAAGAAGGTAATTCCAAAT 59.931 37.037 0.00 0.00 38.84 2.32
2536 3178 6.345096 AGGTAATTCCAAATGAACAACTGG 57.655 37.500 0.00 0.00 39.02 4.00
2538 3180 2.791383 TTCCAAATGAACAACTGGCG 57.209 45.000 0.00 0.00 0.00 5.69
2619 3266 5.653255 ACAACCATATTCTCTGCCCTAAT 57.347 39.130 0.00 0.00 0.00 1.73
2764 3415 7.264947 CAGGAGGTTTGTGTCTAATTTGTTTT 58.735 34.615 0.00 0.00 0.00 2.43
2811 3466 8.893219 TTAACCAATCTGCATACTAATCTGAG 57.107 34.615 0.00 0.00 0.00 3.35
2877 3533 3.074412 CAACATAAAGGGTCTGAAGCGT 58.926 45.455 0.00 0.00 0.00 5.07
2931 3587 0.954452 CGAAGAAGCAAAAGGTGGCT 59.046 50.000 0.00 0.00 43.46 4.75
2938 3594 2.110578 AGCAAAAGGTGGCTGAAAACT 58.889 42.857 0.00 0.00 39.30 2.66
2939 3595 3.295973 AGCAAAAGGTGGCTGAAAACTA 58.704 40.909 0.00 0.00 39.30 2.24
2950 3619 4.286032 TGGCTGAAAACTAGAGAAGGCTAA 59.714 41.667 0.00 0.00 0.00 3.09
3018 3687 5.365895 AGTGGTAAATAGTCCAGTACCATCC 59.634 44.000 4.81 0.00 45.75 3.51
3024 3693 9.895138 GTAAATAGTCCAGTACCATCCTTTAAA 57.105 33.333 0.00 0.00 0.00 1.52
3042 3711 8.107095 TCCTTTAAAGCTATCAAACCTGTGTAT 58.893 33.333 9.86 0.00 0.00 2.29
3049 3718 5.648092 GCTATCAAACCTGTGTATGGACTTT 59.352 40.000 0.00 0.00 0.00 2.66
3053 3722 1.086696 CCTGTGTATGGACTTTGGCG 58.913 55.000 0.00 0.00 0.00 5.69
3072 3741 1.333931 CGTCAGTATCGAGGCAGCTTA 59.666 52.381 0.00 0.00 0.00 3.09
3088 3757 6.723515 AGGCAGCTTATCTATCAGACATAAGA 59.276 38.462 8.78 0.00 33.57 2.10
3112 3781 5.999205 TGGAATTTTGGAGCAACATATGT 57.001 34.783 1.41 1.41 0.00 2.29
3124 3793 8.673711 TGGAGCAACATATGTTACAAGTATTTC 58.326 33.333 20.39 7.02 36.32 2.17
3151 3821 8.339714 TGTTTTACTGTTGTTATTAGCACTGAC 58.660 33.333 0.00 0.00 0.00 3.51
3167 3837 0.738975 TGACATTAGCCGACGAGAGG 59.261 55.000 0.00 0.00 0.00 3.69
3196 3866 7.106439 TGTTGTGATGACATGGTTAAGTTTT 57.894 32.000 0.00 0.00 30.13 2.43
3228 3898 3.214328 ACGTTGTGCCTTTTCTGAATCT 58.786 40.909 0.00 0.00 0.00 2.40
3233 3903 3.575256 TGTGCCTTTTCTGAATCTGCATT 59.425 39.130 10.16 0.00 0.00 3.56
3240 3910 2.910199 TCTGAATCTGCATTTCCTCCG 58.090 47.619 6.98 0.00 0.00 4.63
3254 3924 2.933573 TCCTCCGTTTTTGCAACCTTA 58.066 42.857 0.00 0.00 0.00 2.69
3278 3949 9.913310 TTATCTTTATCCATGGTGTTGTGAATA 57.087 29.630 12.58 0.00 0.00 1.75
3471 5970 5.338056 GGTGACCACTCACTTGAACCATATA 60.338 44.000 0.00 0.00 45.56 0.86
3547 6054 2.159338 GCAATCAAGTTGGCACGATCAT 60.159 45.455 2.34 0.00 38.29 2.45
3548 6055 3.431856 CAATCAAGTTGGCACGATCATG 58.568 45.455 2.34 0.00 34.06 3.07
3549 6056 2.183478 TCAAGTTGGCACGATCATGT 57.817 45.000 2.34 0.00 0.00 3.21
3551 6058 3.000041 TCAAGTTGGCACGATCATGTAC 59.000 45.455 2.34 0.00 0.00 2.90
3552 6059 2.741517 CAAGTTGGCACGATCATGTACA 59.258 45.455 0.00 0.00 0.00 2.90
3557 6064 5.645929 AGTTGGCACGATCATGTACATTTTA 59.354 36.000 5.37 0.00 0.00 1.52
3558 6065 6.318648 AGTTGGCACGATCATGTACATTTTAT 59.681 34.615 5.37 0.07 0.00 1.40
3559 6066 7.497579 AGTTGGCACGATCATGTACATTTTATA 59.502 33.333 5.37 0.00 0.00 0.98
3607 6114 7.728532 AGAATCTCTCTTCTACTCTTAATCCCC 59.271 40.741 0.00 0.00 33.73 4.81
3630 6137 1.302832 CCTGCCAGTGGAGGTCAAC 60.303 63.158 15.20 0.00 0.00 3.18
3631 6138 1.669115 CTGCCAGTGGAGGTCAACG 60.669 63.158 15.20 0.00 0.00 4.10
3639 6146 0.396435 TGGAGGTCAACGAAGTGCAT 59.604 50.000 0.00 0.00 45.00 3.96
3643 6153 3.500680 GGAGGTCAACGAAGTGCATTTAA 59.499 43.478 0.00 0.00 45.00 1.52
3647 6157 6.512297 AGGTCAACGAAGTGCATTTAAATTT 58.488 32.000 0.00 0.00 45.00 1.82
3649 6159 7.494298 AGGTCAACGAAGTGCATTTAAATTTTT 59.506 29.630 0.00 0.00 45.00 1.94
3737 6314 1.136141 GTTGACAAGATGCACAGCTCG 60.136 52.381 0.00 0.00 0.00 5.03
3742 6319 1.023513 AAGATGCACAGCTCGCTTCC 61.024 55.000 13.90 1.87 34.89 3.46
3744 6321 1.002868 ATGCACAGCTCGCTTCCTT 60.003 52.632 6.24 0.00 0.00 3.36
3745 6322 1.023513 ATGCACAGCTCGCTTCCTTC 61.024 55.000 6.24 0.00 0.00 3.46
3746 6323 1.669115 GCACAGCTCGCTTCCTTCA 60.669 57.895 0.00 0.00 0.00 3.02
3747 6324 1.023513 GCACAGCTCGCTTCCTTCAT 61.024 55.000 0.00 0.00 0.00 2.57
3748 6325 1.005340 CACAGCTCGCTTCCTTCATC 58.995 55.000 0.00 0.00 0.00 2.92
3749 6326 0.901124 ACAGCTCGCTTCCTTCATCT 59.099 50.000 0.00 0.00 0.00 2.90
3750 6327 1.277557 ACAGCTCGCTTCCTTCATCTT 59.722 47.619 0.00 0.00 0.00 2.40
3751 6328 1.932511 CAGCTCGCTTCCTTCATCTTC 59.067 52.381 0.00 0.00 0.00 2.87
3752 6329 1.134551 AGCTCGCTTCCTTCATCTTCC 60.135 52.381 0.00 0.00 0.00 3.46
3753 6330 1.946745 CTCGCTTCCTTCATCTTCCC 58.053 55.000 0.00 0.00 0.00 3.97
3788 6365 2.737252 GGCAGCGTCCATTATAACTAGC 59.263 50.000 0.00 0.00 0.00 3.42
3830 6412 1.211457 CACCATTCCAAGCTCTAGCCT 59.789 52.381 0.00 0.00 43.38 4.58
3831 6413 2.435805 CACCATTCCAAGCTCTAGCCTA 59.564 50.000 0.00 0.00 43.38 3.93
3832 6414 2.703007 ACCATTCCAAGCTCTAGCCTAG 59.297 50.000 0.00 0.00 43.38 3.02
3833 6415 2.549778 CCATTCCAAGCTCTAGCCTAGC 60.550 54.545 0.00 0.00 43.38 3.42
3834 6416 1.123928 TTCCAAGCTCTAGCCTAGCC 58.876 55.000 0.00 0.00 43.38 3.93
3835 6417 0.032117 TCCAAGCTCTAGCCTAGCCA 60.032 55.000 0.00 0.00 43.38 4.75
3836 6418 0.392336 CCAAGCTCTAGCCTAGCCAG 59.608 60.000 0.00 0.00 43.38 4.85
3879 6461 3.012274 TCTCCATTCTCTTCCTCTCCTGT 59.988 47.826 0.00 0.00 0.00 4.00
3883 6465 5.103301 TCCATTCTCTTCCTCTCCTGTATCT 60.103 44.000 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.821589 CGCCAGCCGAGGAGGAAC 62.822 72.222 5.41 0.00 45.00 3.62
21 22 4.923942 ATGATGCGCCAGCCGAGG 62.924 66.667 4.18 0.00 44.33 4.63
22 23 3.344215 GATGATGCGCCAGCCGAG 61.344 66.667 4.18 0.00 44.33 4.63
23 24 3.465258 ATGATGATGCGCCAGCCGA 62.465 57.895 4.18 0.00 44.33 5.54
24 25 2.962827 GATGATGATGCGCCAGCCG 61.963 63.158 4.18 0.00 44.33 5.52
25 26 2.623915 GGATGATGATGCGCCAGCC 61.624 63.158 4.18 2.99 44.33 4.85
26 27 1.575576 GAGGATGATGATGCGCCAGC 61.576 60.000 4.18 0.00 45.41 4.85
27 28 0.250166 TGAGGATGATGATGCGCCAG 60.250 55.000 4.18 0.00 0.00 4.85
28 29 0.180878 TTGAGGATGATGATGCGCCA 59.819 50.000 4.18 0.00 0.00 5.69
29 30 1.266175 CTTTGAGGATGATGATGCGCC 59.734 52.381 4.18 0.00 0.00 6.53
30 31 2.216046 TCTTTGAGGATGATGATGCGC 58.784 47.619 0.00 0.00 0.00 6.09
31 32 4.062991 TGATCTTTGAGGATGATGATGCG 58.937 43.478 0.00 0.00 0.00 4.73
32 33 4.820173 TGTGATCTTTGAGGATGATGATGC 59.180 41.667 0.00 0.00 0.00 3.91
33 34 6.710744 TGATGTGATCTTTGAGGATGATGATG 59.289 38.462 0.00 0.00 0.00 3.07
34 35 6.838382 TGATGTGATCTTTGAGGATGATGAT 58.162 36.000 0.00 0.00 0.00 2.45
35 36 6.243216 TGATGTGATCTTTGAGGATGATGA 57.757 37.500 0.00 0.00 0.00 2.92
36 37 6.937465 AGATGATGTGATCTTTGAGGATGATG 59.063 38.462 0.00 0.00 27.38 3.07
37 38 7.080653 AGATGATGTGATCTTTGAGGATGAT 57.919 36.000 0.00 0.00 27.38 2.45
38 39 6.496144 AGATGATGTGATCTTTGAGGATGA 57.504 37.500 0.00 0.00 27.38 2.92
39 40 6.874664 CCTAGATGATGTGATCTTTGAGGATG 59.125 42.308 0.00 0.00 34.42 3.51
40 41 6.558014 ACCTAGATGATGTGATCTTTGAGGAT 59.442 38.462 0.00 0.00 34.42 3.24
41 42 5.901853 ACCTAGATGATGTGATCTTTGAGGA 59.098 40.000 0.00 0.00 34.42 3.71
42 43 6.041865 AGACCTAGATGATGTGATCTTTGAGG 59.958 42.308 0.00 0.00 34.42 3.86
43 44 7.053316 AGACCTAGATGATGTGATCTTTGAG 57.947 40.000 0.00 0.00 34.42 3.02
44 45 7.344093 AGAAGACCTAGATGATGTGATCTTTGA 59.656 37.037 0.00 0.00 34.42 2.69
45 46 7.499292 AGAAGACCTAGATGATGTGATCTTTG 58.501 38.462 0.00 0.00 34.42 2.77
46 47 7.673641 AGAAGACCTAGATGATGTGATCTTT 57.326 36.000 0.00 0.00 34.42 2.52
47 48 7.201992 GGAAGAAGACCTAGATGATGTGATCTT 60.202 40.741 0.00 0.00 34.42 2.40
48 49 6.267471 GGAAGAAGACCTAGATGATGTGATCT 59.733 42.308 0.00 0.00 36.61 2.75
49 50 6.267471 AGGAAGAAGACCTAGATGATGTGATC 59.733 42.308 0.00 0.00 35.84 2.92
50 51 6.142498 AGGAAGAAGACCTAGATGATGTGAT 58.858 40.000 0.00 0.00 35.84 3.06
51 52 5.523588 AGGAAGAAGACCTAGATGATGTGA 58.476 41.667 0.00 0.00 35.84 3.58
52 53 5.867903 AGGAAGAAGACCTAGATGATGTG 57.132 43.478 0.00 0.00 35.84 3.21
53 54 6.882768 AAAGGAAGAAGACCTAGATGATGT 57.117 37.500 0.00 0.00 36.67 3.06
54 55 6.928492 GCTAAAGGAAGAAGACCTAGATGATG 59.072 42.308 0.00 0.00 36.67 3.07
55 56 6.239176 CGCTAAAGGAAGAAGACCTAGATGAT 60.239 42.308 0.00 0.00 36.67 2.45
56 57 5.067936 CGCTAAAGGAAGAAGACCTAGATGA 59.932 44.000 0.00 0.00 36.67 2.92
57 58 5.285651 CGCTAAAGGAAGAAGACCTAGATG 58.714 45.833 0.00 0.00 36.67 2.90
58 59 4.202172 GCGCTAAAGGAAGAAGACCTAGAT 60.202 45.833 0.00 0.00 36.67 1.98
59 60 3.130693 GCGCTAAAGGAAGAAGACCTAGA 59.869 47.826 0.00 0.00 36.67 2.43
60 61 3.131400 AGCGCTAAAGGAAGAAGACCTAG 59.869 47.826 8.99 0.00 36.67 3.02
61 62 3.097614 AGCGCTAAAGGAAGAAGACCTA 58.902 45.455 8.99 0.00 36.67 3.08
62 63 1.903183 AGCGCTAAAGGAAGAAGACCT 59.097 47.619 8.99 0.00 39.69 3.85
63 64 2.388310 AGCGCTAAAGGAAGAAGACC 57.612 50.000 8.99 0.00 0.00 3.85
64 65 4.112716 ACTAGCGCTAAAGGAAGAAGAC 57.887 45.455 19.37 0.00 0.00 3.01
65 66 4.463186 AGAACTAGCGCTAAAGGAAGAAGA 59.537 41.667 19.37 0.00 0.00 2.87
66 67 4.749976 AGAACTAGCGCTAAAGGAAGAAG 58.250 43.478 19.37 7.56 0.00 2.85
67 68 4.803098 AGAACTAGCGCTAAAGGAAGAA 57.197 40.909 19.37 0.00 0.00 2.52
68 69 4.495422 CAAGAACTAGCGCTAAAGGAAGA 58.505 43.478 19.37 0.00 0.00 2.87
69 70 3.062774 GCAAGAACTAGCGCTAAAGGAAG 59.937 47.826 19.37 9.93 0.00 3.46
70 71 3.000727 GCAAGAACTAGCGCTAAAGGAA 58.999 45.455 19.37 0.00 0.00 3.36
71 72 2.028476 TGCAAGAACTAGCGCTAAAGGA 60.028 45.455 19.37 0.00 0.00 3.36
72 73 2.346803 TGCAAGAACTAGCGCTAAAGG 58.653 47.619 19.37 9.62 0.00 3.11
73 74 3.618594 TCATGCAAGAACTAGCGCTAAAG 59.381 43.478 19.37 12.33 0.00 1.85
74 75 3.595173 TCATGCAAGAACTAGCGCTAAA 58.405 40.909 19.37 0.00 0.00 1.85
75 76 3.119137 TCTCATGCAAGAACTAGCGCTAA 60.119 43.478 19.37 0.56 0.00 3.09
76 77 2.427095 TCTCATGCAAGAACTAGCGCTA 59.573 45.455 17.75 17.75 0.00 4.26
77 78 1.205655 TCTCATGCAAGAACTAGCGCT 59.794 47.619 17.26 17.26 0.00 5.92
78 79 1.645034 TCTCATGCAAGAACTAGCGC 58.355 50.000 0.00 0.00 0.00 5.92
79 80 2.799412 GGATCTCATGCAAGAACTAGCG 59.201 50.000 0.00 0.00 0.00 4.26
80 81 4.057432 GAGGATCTCATGCAAGAACTAGC 58.943 47.826 0.00 0.00 0.00 3.42
81 82 4.100653 TGGAGGATCTCATGCAAGAACTAG 59.899 45.833 0.00 0.00 33.73 2.57
82 83 4.033009 TGGAGGATCTCATGCAAGAACTA 58.967 43.478 0.00 0.00 33.73 2.24
83 84 2.842496 TGGAGGATCTCATGCAAGAACT 59.158 45.455 0.00 0.00 33.73 3.01
84 85 3.272574 TGGAGGATCTCATGCAAGAAC 57.727 47.619 0.00 0.00 33.73 3.01
85 86 3.265221 AGTTGGAGGATCTCATGCAAGAA 59.735 43.478 0.00 0.00 38.55 2.52
86 87 2.842496 AGTTGGAGGATCTCATGCAAGA 59.158 45.455 0.00 0.00 38.55 3.02
87 88 3.278668 AGTTGGAGGATCTCATGCAAG 57.721 47.619 0.00 0.00 38.55 4.01
88 89 3.614092 GAAGTTGGAGGATCTCATGCAA 58.386 45.455 0.00 0.00 35.72 4.08
89 90 2.092753 GGAAGTTGGAGGATCTCATGCA 60.093 50.000 0.00 0.00 33.73 3.96
90 91 2.570135 GGAAGTTGGAGGATCTCATGC 58.430 52.381 0.00 0.00 33.73 4.06
91 92 2.158696 GGGGAAGTTGGAGGATCTCATG 60.159 54.545 0.00 0.00 33.73 3.07
92 93 2.131023 GGGGAAGTTGGAGGATCTCAT 58.869 52.381 0.00 0.00 33.73 2.90
93 94 1.081174 AGGGGAAGTTGGAGGATCTCA 59.919 52.381 0.00 0.00 33.73 3.27
94 95 1.886422 AGGGGAAGTTGGAGGATCTC 58.114 55.000 0.00 0.00 33.73 2.75
95 96 2.200955 GAAGGGGAAGTTGGAGGATCT 58.799 52.381 0.00 0.00 33.73 2.75
96 97 1.213182 GGAAGGGGAAGTTGGAGGATC 59.787 57.143 0.00 0.00 0.00 3.36
97 98 1.299939 GGAAGGGGAAGTTGGAGGAT 58.700 55.000 0.00 0.00 0.00 3.24
98 99 0.845102 GGGAAGGGGAAGTTGGAGGA 60.845 60.000 0.00 0.00 0.00 3.71
99 100 1.691823 GGGAAGGGGAAGTTGGAGG 59.308 63.158 0.00 0.00 0.00 4.30
100 101 0.846870 AGGGGAAGGGGAAGTTGGAG 60.847 60.000 0.00 0.00 0.00 3.86
101 102 0.404346 AAGGGGAAGGGGAAGTTGGA 60.404 55.000 0.00 0.00 0.00 3.53
102 103 0.251787 CAAGGGGAAGGGGAAGTTGG 60.252 60.000 0.00 0.00 0.00 3.77
103 104 0.251787 CCAAGGGGAAGGGGAAGTTG 60.252 60.000 0.00 0.00 35.59 3.16
104 105 2.094170 GCCAAGGGGAAGGGGAAGTT 62.094 60.000 0.00 0.00 35.59 2.66
105 106 2.548547 GCCAAGGGGAAGGGGAAGT 61.549 63.158 0.00 0.00 35.59 3.01
106 107 2.360585 GCCAAGGGGAAGGGGAAG 59.639 66.667 0.00 0.00 35.59 3.46
107 108 3.657350 CGCCAAGGGGAAGGGGAA 61.657 66.667 0.00 0.00 40.00 3.97
108 109 4.995058 ACGCCAAGGGGAAGGGGA 62.995 66.667 10.39 0.00 40.00 4.81
109 110 3.523374 AAACGCCAAGGGGAAGGGG 62.523 63.158 10.39 0.00 42.95 4.79
110 111 1.977009 GAAACGCCAAGGGGAAGGG 60.977 63.158 10.39 0.00 35.59 3.95
111 112 1.977009 GGAAACGCCAAGGGGAAGG 60.977 63.158 10.39 0.00 35.59 3.46
112 113 1.074951 AGGAAACGCCAAGGGGAAG 59.925 57.895 10.39 0.00 40.02 3.46
113 114 1.228429 CAGGAAACGCCAAGGGGAA 60.228 57.895 10.39 0.00 40.02 3.97
114 115 2.434331 CAGGAAACGCCAAGGGGA 59.566 61.111 10.39 0.00 40.02 4.81
115 116 3.373565 GCAGGAAACGCCAAGGGG 61.374 66.667 1.12 1.12 40.02 4.79
116 117 2.597217 TGCAGGAAACGCCAAGGG 60.597 61.111 0.00 0.00 40.02 3.95
117 118 0.962356 ATCTGCAGGAAACGCCAAGG 60.962 55.000 15.13 0.00 40.02 3.61
118 119 0.169672 CATCTGCAGGAAACGCCAAG 59.830 55.000 15.13 0.00 40.02 3.61
119 120 0.537143 ACATCTGCAGGAAACGCCAA 60.537 50.000 15.13 0.00 40.02 4.52
120 121 1.073025 ACATCTGCAGGAAACGCCA 59.927 52.632 15.13 0.00 40.02 5.69
121 122 1.237285 ACACATCTGCAGGAAACGCC 61.237 55.000 15.13 0.00 0.00 5.68
122 123 0.166814 GACACATCTGCAGGAAACGC 59.833 55.000 15.13 0.00 0.00 4.84
123 124 1.195448 GTGACACATCTGCAGGAAACG 59.805 52.381 15.13 1.69 0.00 3.60
124 125 1.537202 GGTGACACATCTGCAGGAAAC 59.463 52.381 15.13 3.23 0.00 2.78
125 126 1.142667 TGGTGACACATCTGCAGGAAA 59.857 47.619 15.13 0.00 33.40 3.13
126 127 0.764271 TGGTGACACATCTGCAGGAA 59.236 50.000 15.13 0.00 33.40 3.36
127 128 0.322648 CTGGTGACACATCTGCAGGA 59.677 55.000 15.13 0.57 35.60 3.86
128 129 0.675837 CCTGGTGACACATCTGCAGG 60.676 60.000 15.13 10.31 35.60 4.85
129 130 0.035881 ACCTGGTGACACATCTGCAG 59.964 55.000 7.63 7.63 35.60 4.41
130 131 0.035317 GACCTGGTGACACATCTGCA 59.965 55.000 2.82 0.00 35.60 4.41
131 132 0.674895 GGACCTGGTGACACATCTGC 60.675 60.000 2.82 0.00 35.60 4.26
132 133 0.036010 GGGACCTGGTGACACATCTG 60.036 60.000 2.82 0.00 35.60 2.90
133 134 1.544825 CGGGACCTGGTGACACATCT 61.545 60.000 2.82 0.00 35.60 2.90
134 135 1.079127 CGGGACCTGGTGACACATC 60.079 63.158 2.82 0.00 35.60 3.06
135 136 3.068881 CGGGACCTGGTGACACAT 58.931 61.111 2.82 0.00 35.60 3.21
136 137 3.936203 GCGGGACCTGGTGACACA 61.936 66.667 2.82 0.00 35.60 3.72
137 138 4.699522 GGCGGGACCTGGTGACAC 62.700 72.222 2.82 0.00 35.60 3.67
139 140 2.311688 CTATGGCGGGACCTGGTGAC 62.312 65.000 2.82 0.00 40.22 3.67
140 141 2.039787 TATGGCGGGACCTGGTGA 59.960 61.111 2.82 0.00 40.22 4.02
141 142 2.505982 CTATGGCGGGACCTGGTG 59.494 66.667 2.82 0.00 40.22 4.17
142 143 3.480133 GCTATGGCGGGACCTGGT 61.480 66.667 0.00 0.00 40.22 4.00
143 144 4.256180 GGCTATGGCGGGACCTGG 62.256 72.222 1.55 0.00 40.22 4.45
144 145 4.256180 GGGCTATGGCGGGACCTG 62.256 72.222 0.00 0.00 40.22 4.00
147 148 3.352990 TTTGGGGCTATGGCGGGAC 62.353 63.158 0.00 0.00 39.81 4.46
148 149 3.018193 TTTGGGGCTATGGCGGGA 61.018 61.111 0.00 0.00 39.81 5.14
149 150 2.833121 GTTTGGGGCTATGGCGGG 60.833 66.667 0.00 0.00 39.81 6.13
150 151 0.970427 AAAGTTTGGGGCTATGGCGG 60.970 55.000 0.00 0.00 39.81 6.13
151 152 1.676006 CTAAAGTTTGGGGCTATGGCG 59.324 52.381 0.00 0.00 39.81 5.69
152 153 2.031870 CCTAAAGTTTGGGGCTATGGC 58.968 52.381 10.09 0.00 37.82 4.40
153 154 2.666317 CCCTAAAGTTTGGGGCTATGG 58.334 52.381 22.73 0.02 45.06 2.74
175 176 6.407074 GGAAGGAGGAGATCGATCTACAAAAA 60.407 42.308 33.82 0.00 40.34 1.94
176 177 5.069251 GGAAGGAGGAGATCGATCTACAAAA 59.931 44.000 33.82 0.00 40.34 2.44
177 178 4.585162 GGAAGGAGGAGATCGATCTACAAA 59.415 45.833 33.82 0.00 40.34 2.83
178 179 4.145807 GGAAGGAGGAGATCGATCTACAA 58.854 47.826 33.82 0.00 40.34 2.41
179 180 3.498841 GGGAAGGAGGAGATCGATCTACA 60.499 52.174 33.82 0.00 40.34 2.74
180 181 3.086282 GGGAAGGAGGAGATCGATCTAC 58.914 54.545 27.41 27.41 37.25 2.59
181 182 2.716969 TGGGAAGGAGGAGATCGATCTA 59.283 50.000 27.36 5.52 37.25 1.98
182 183 1.501170 TGGGAAGGAGGAGATCGATCT 59.499 52.381 27.63 27.63 40.50 2.75
183 184 2.002505 TGGGAAGGAGGAGATCGATC 57.997 55.000 17.91 17.91 0.00 3.69
184 185 2.324541 CTTGGGAAGGAGGAGATCGAT 58.675 52.381 0.00 0.00 0.00 3.59
185 186 1.781786 CTTGGGAAGGAGGAGATCGA 58.218 55.000 0.00 0.00 0.00 3.59
197 198 3.077695 ACCTCTCTACTCTTCCTTGGGAA 59.922 47.826 0.00 0.00 39.66 3.97
198 199 2.655407 ACCTCTCTACTCTTCCTTGGGA 59.345 50.000 0.00 0.00 0.00 4.37
199 200 3.108847 ACCTCTCTACTCTTCCTTGGG 57.891 52.381 0.00 0.00 0.00 4.12
200 201 6.399743 GTTTTACCTCTCTACTCTTCCTTGG 58.600 44.000 0.00 0.00 0.00 3.61
201 202 6.399743 GGTTTTACCTCTCTACTCTTCCTTG 58.600 44.000 0.00 0.00 34.73 3.61
202 203 5.484644 GGGTTTTACCTCTCTACTCTTCCTT 59.515 44.000 0.00 0.00 38.64 3.36
203 204 5.024785 GGGTTTTACCTCTCTACTCTTCCT 58.975 45.833 0.00 0.00 38.64 3.36
204 205 5.024785 AGGGTTTTACCTCTCTACTCTTCC 58.975 45.833 0.00 0.00 38.64 3.46
205 206 7.396907 AGTTAGGGTTTTACCTCTCTACTCTTC 59.603 40.741 0.00 0.00 42.09 2.87
206 207 7.247500 AGTTAGGGTTTTACCTCTCTACTCTT 58.753 38.462 0.00 0.00 42.09 2.85
207 208 6.803017 AGTTAGGGTTTTACCTCTCTACTCT 58.197 40.000 0.00 0.00 42.09 3.24
208 209 6.183360 CGAGTTAGGGTTTTACCTCTCTACTC 60.183 46.154 0.00 0.00 42.09 2.59
209 210 5.651576 CGAGTTAGGGTTTTACCTCTCTACT 59.348 44.000 0.00 0.00 42.09 2.57
210 211 5.678361 GCGAGTTAGGGTTTTACCTCTCTAC 60.678 48.000 0.00 0.00 42.09 2.59
211 212 4.400567 GCGAGTTAGGGTTTTACCTCTCTA 59.599 45.833 0.00 0.00 42.09 2.43
212 213 3.195182 GCGAGTTAGGGTTTTACCTCTCT 59.805 47.826 0.00 0.00 42.09 3.10
213 214 3.195182 AGCGAGTTAGGGTTTTACCTCTC 59.805 47.826 0.00 0.00 42.09 3.20
214 215 3.171528 AGCGAGTTAGGGTTTTACCTCT 58.828 45.455 0.00 0.00 42.09 3.69
215 216 3.056322 TGAGCGAGTTAGGGTTTTACCTC 60.056 47.826 0.00 0.00 42.09 3.85
216 217 2.901839 TGAGCGAGTTAGGGTTTTACCT 59.098 45.455 0.00 0.00 44.75 3.08
217 218 3.259902 CTGAGCGAGTTAGGGTTTTACC 58.740 50.000 0.00 0.00 37.60 2.85
218 219 2.671888 GCTGAGCGAGTTAGGGTTTTAC 59.328 50.000 0.00 0.00 0.00 2.01
219 220 2.354403 GGCTGAGCGAGTTAGGGTTTTA 60.354 50.000 0.00 0.00 0.00 1.52
220 221 1.610886 GGCTGAGCGAGTTAGGGTTTT 60.611 52.381 0.00 0.00 0.00 2.43
221 222 0.036294 GGCTGAGCGAGTTAGGGTTT 60.036 55.000 0.00 0.00 0.00 3.27
222 223 1.597461 GGCTGAGCGAGTTAGGGTT 59.403 57.895 0.00 0.00 0.00 4.11
223 224 2.359967 GGGCTGAGCGAGTTAGGGT 61.360 63.158 0.00 0.00 0.00 4.34
224 225 2.501610 GGGCTGAGCGAGTTAGGG 59.498 66.667 0.00 0.00 0.00 3.53
225 226 2.501610 GGGGCTGAGCGAGTTAGG 59.498 66.667 0.00 0.00 0.00 2.69
226 227 0.755698 TAGGGGGCTGAGCGAGTTAG 60.756 60.000 0.00 0.00 0.00 2.34
227 228 0.105658 ATAGGGGGCTGAGCGAGTTA 60.106 55.000 0.00 0.00 0.00 2.24
228 229 0.983378 AATAGGGGGCTGAGCGAGTT 60.983 55.000 0.00 0.00 0.00 3.01
229 230 0.983378 AAATAGGGGGCTGAGCGAGT 60.983 55.000 0.00 0.00 0.00 4.18
230 231 0.250081 GAAATAGGGGGCTGAGCGAG 60.250 60.000 0.00 0.00 0.00 5.03
231 232 1.696097 GGAAATAGGGGGCTGAGCGA 61.696 60.000 0.00 0.00 0.00 4.93
232 233 1.227973 GGAAATAGGGGGCTGAGCG 60.228 63.158 0.00 0.00 0.00 5.03
233 234 0.466372 GTGGAAATAGGGGGCTGAGC 60.466 60.000 0.00 0.00 0.00 4.26
234 235 0.183731 GGTGGAAATAGGGGGCTGAG 59.816 60.000 0.00 0.00 0.00 3.35
235 236 1.286305 GGGTGGAAATAGGGGGCTGA 61.286 60.000 0.00 0.00 0.00 4.26
236 237 1.230212 GGGTGGAAATAGGGGGCTG 59.770 63.158 0.00 0.00 0.00 4.85
237 238 1.086757 AGGGTGGAAATAGGGGGCT 59.913 57.895 0.00 0.00 0.00 5.19
238 239 1.230212 CAGGGTGGAAATAGGGGGC 59.770 63.158 0.00 0.00 0.00 5.80
239 240 0.551396 GTCAGGGTGGAAATAGGGGG 59.449 60.000 0.00 0.00 0.00 5.40
240 241 1.490910 GAGTCAGGGTGGAAATAGGGG 59.509 57.143 0.00 0.00 0.00 4.79
241 242 1.490910 GGAGTCAGGGTGGAAATAGGG 59.509 57.143 0.00 0.00 0.00 3.53
242 243 1.139058 CGGAGTCAGGGTGGAAATAGG 59.861 57.143 0.00 0.00 0.00 2.57
243 244 2.108168 TCGGAGTCAGGGTGGAAATAG 58.892 52.381 0.00 0.00 0.00 1.73
244 245 2.235402 GTTCGGAGTCAGGGTGGAAATA 59.765 50.000 0.00 0.00 0.00 1.40
245 246 1.003233 GTTCGGAGTCAGGGTGGAAAT 59.997 52.381 0.00 0.00 0.00 2.17
246 247 0.395312 GTTCGGAGTCAGGGTGGAAA 59.605 55.000 0.00 0.00 0.00 3.13
247 248 1.477685 GGTTCGGAGTCAGGGTGGAA 61.478 60.000 0.00 0.00 0.00 3.53
248 249 1.911766 GGTTCGGAGTCAGGGTGGA 60.912 63.158 0.00 0.00 0.00 4.02
249 250 2.663196 GGTTCGGAGTCAGGGTGG 59.337 66.667 0.00 0.00 0.00 4.61
250 251 2.261671 CGGTTCGGAGTCAGGGTG 59.738 66.667 0.00 0.00 0.00 4.61
251 252 3.692406 GCGGTTCGGAGTCAGGGT 61.692 66.667 0.00 0.00 0.00 4.34
252 253 3.649277 CTGCGGTTCGGAGTCAGGG 62.649 68.421 0.75 0.00 40.30 4.45
253 254 2.125912 CTGCGGTTCGGAGTCAGG 60.126 66.667 0.75 0.00 40.30 3.86
254 255 2.811317 GCTGCGGTTCGGAGTCAG 60.811 66.667 10.21 0.52 46.53 3.51
271 272 2.348998 GATATGCCTCTGCCCGGG 59.651 66.667 19.09 19.09 36.33 5.73
272 273 2.047844 CGATATGCCTCTGCCCGG 60.048 66.667 0.00 0.00 36.33 5.73
273 274 2.047844 CCGATATGCCTCTGCCCG 60.048 66.667 0.00 0.00 36.33 6.13
274 275 2.348998 CCCGATATGCCTCTGCCC 59.651 66.667 0.00 0.00 36.33 5.36
275 276 1.302033 CACCCGATATGCCTCTGCC 60.302 63.158 0.00 0.00 36.33 4.85
276 277 0.882042 CACACCCGATATGCCTCTGC 60.882 60.000 0.00 0.00 38.26 4.26
277 278 0.465705 ACACACCCGATATGCCTCTG 59.534 55.000 0.00 0.00 0.00 3.35
278 279 0.465705 CACACACCCGATATGCCTCT 59.534 55.000 0.00 0.00 0.00 3.69
279 280 0.532862 CCACACACCCGATATGCCTC 60.533 60.000 0.00 0.00 0.00 4.70
280 281 0.980754 TCCACACACCCGATATGCCT 60.981 55.000 0.00 0.00 0.00 4.75
281 282 0.532862 CTCCACACACCCGATATGCC 60.533 60.000 0.00 0.00 0.00 4.40
282 283 0.532862 CCTCCACACACCCGATATGC 60.533 60.000 0.00 0.00 0.00 3.14
283 284 1.069204 CTCCTCCACACACCCGATATG 59.931 57.143 0.00 0.00 0.00 1.78
284 285 1.063190 TCTCCTCCACACACCCGATAT 60.063 52.381 0.00 0.00 0.00 1.63
285 286 0.333652 TCTCCTCCACACACCCGATA 59.666 55.000 0.00 0.00 0.00 2.92
286 287 0.972983 CTCTCCTCCACACACCCGAT 60.973 60.000 0.00 0.00 0.00 4.18
287 288 1.606601 CTCTCCTCCACACACCCGA 60.607 63.158 0.00 0.00 0.00 5.14
288 289 2.650116 CCTCTCCTCCACACACCCG 61.650 68.421 0.00 0.00 0.00 5.28
289 290 2.294078 CCCTCTCCTCCACACACCC 61.294 68.421 0.00 0.00 0.00 4.61
290 291 1.229209 TCCCTCTCCTCCACACACC 60.229 63.158 0.00 0.00 0.00 4.16
291 292 1.878656 CGTCCCTCTCCTCCACACAC 61.879 65.000 0.00 0.00 0.00 3.82
292 293 1.606601 CGTCCCTCTCCTCCACACA 60.607 63.158 0.00 0.00 0.00 3.72
293 294 2.352032 CCGTCCCTCTCCTCCACAC 61.352 68.421 0.00 0.00 0.00 3.82
294 295 1.503401 TACCGTCCCTCTCCTCCACA 61.503 60.000 0.00 0.00 0.00 4.17
295 296 0.752376 CTACCGTCCCTCTCCTCCAC 60.752 65.000 0.00 0.00 0.00 4.02
296 297 1.613610 CTACCGTCCCTCTCCTCCA 59.386 63.158 0.00 0.00 0.00 3.86
297 298 1.152715 CCTACCGTCCCTCTCCTCC 60.153 68.421 0.00 0.00 0.00 4.30
298 299 0.033306 AACCTACCGTCCCTCTCCTC 60.033 60.000 0.00 0.00 0.00 3.71
299 300 0.033306 GAACCTACCGTCCCTCTCCT 60.033 60.000 0.00 0.00 0.00 3.69
300 301 0.033306 AGAACCTACCGTCCCTCTCC 60.033 60.000 0.00 0.00 0.00 3.71
301 302 1.340795 TGAGAACCTACCGTCCCTCTC 60.341 57.143 0.00 0.00 0.00 3.20
302 303 0.702902 TGAGAACCTACCGTCCCTCT 59.297 55.000 0.00 0.00 0.00 3.69
303 304 1.204231 GTTGAGAACCTACCGTCCCTC 59.796 57.143 0.00 0.00 0.00 4.30
304 305 1.264295 GTTGAGAACCTACCGTCCCT 58.736 55.000 0.00 0.00 0.00 4.20
305 306 0.108945 CGTTGAGAACCTACCGTCCC 60.109 60.000 0.00 0.00 0.00 4.46
306 307 0.600057 ACGTTGAGAACCTACCGTCC 59.400 55.000 0.00 0.00 0.00 4.79
307 308 1.727213 CGACGTTGAGAACCTACCGTC 60.727 57.143 0.00 0.00 0.00 4.79
308 309 0.239347 CGACGTTGAGAACCTACCGT 59.761 55.000 0.00 0.00 0.00 4.83
309 310 1.069378 GCGACGTTGAGAACCTACCG 61.069 60.000 7.08 0.00 0.00 4.02
310 311 0.735287 GGCGACGTTGAGAACCTACC 60.735 60.000 7.08 0.00 0.00 3.18
311 312 0.038892 TGGCGACGTTGAGAACCTAC 60.039 55.000 7.08 0.00 0.00 3.18
312 313 0.038892 GTGGCGACGTTGAGAACCTA 60.039 55.000 7.08 0.00 0.00 3.08
313 314 1.300697 GTGGCGACGTTGAGAACCT 60.301 57.895 7.08 0.00 0.00 3.50
314 315 2.315386 GGTGGCGACGTTGAGAACC 61.315 63.158 7.08 6.60 0.00 3.62
315 316 2.654912 CGGTGGCGACGTTGAGAAC 61.655 63.158 7.08 0.65 0.00 3.01
316 317 2.355363 CGGTGGCGACGTTGAGAA 60.355 61.111 7.08 0.00 0.00 2.87
317 318 4.351938 CCGGTGGCGACGTTGAGA 62.352 66.667 7.08 0.00 0.00 3.27
328 329 4.135153 CCTCTCGTCAGCCGGTGG 62.135 72.222 1.90 0.00 37.11 4.61
329 330 2.549611 CTTCCTCTCGTCAGCCGGTG 62.550 65.000 1.90 0.00 37.11 4.94
330 331 2.282958 TTCCTCTCGTCAGCCGGT 60.283 61.111 1.90 0.00 37.11 5.28
331 332 1.595993 TTCTTCCTCTCGTCAGCCGG 61.596 60.000 0.00 0.00 37.11 6.13
332 333 0.179150 CTTCTTCCTCTCGTCAGCCG 60.179 60.000 0.00 0.00 38.13 5.52
333 334 1.178276 TCTTCTTCCTCTCGTCAGCC 58.822 55.000 0.00 0.00 0.00 4.85
334 335 2.990514 GTTTCTTCTTCCTCTCGTCAGC 59.009 50.000 0.00 0.00 0.00 4.26
335 336 3.580731 GGTTTCTTCTTCCTCTCGTCAG 58.419 50.000 0.00 0.00 0.00 3.51
336 337 2.299297 GGGTTTCTTCTTCCTCTCGTCA 59.701 50.000 0.00 0.00 0.00 4.35
337 338 2.563620 AGGGTTTCTTCTTCCTCTCGTC 59.436 50.000 0.00 0.00 0.00 4.20
338 339 2.610873 AGGGTTTCTTCTTCCTCTCGT 58.389 47.619 0.00 0.00 0.00 4.18
339 340 4.496360 GTTAGGGTTTCTTCTTCCTCTCG 58.504 47.826 0.00 0.00 0.00 4.04
340 341 4.220163 TCGTTAGGGTTTCTTCTTCCTCTC 59.780 45.833 0.00 0.00 0.00 3.20
341 342 4.158015 TCGTTAGGGTTTCTTCTTCCTCT 58.842 43.478 0.00 0.00 0.00 3.69
342 343 4.220163 TCTCGTTAGGGTTTCTTCTTCCTC 59.780 45.833 0.00 0.00 0.00 3.71
343 344 4.158015 TCTCGTTAGGGTTTCTTCTTCCT 58.842 43.478 0.00 0.00 0.00 3.36
344 345 4.496360 CTCTCGTTAGGGTTTCTTCTTCC 58.504 47.826 0.00 0.00 0.00 3.46
345 346 4.496360 CCTCTCGTTAGGGTTTCTTCTTC 58.504 47.826 0.00 0.00 32.55 2.87
346 347 4.538746 CCTCTCGTTAGGGTTTCTTCTT 57.461 45.455 0.00 0.00 32.55 2.52
356 357 4.454847 GGAAAGTTTTTCCCTCTCGTTAGG 59.545 45.833 9.00 0.00 36.30 2.69
357 358 5.608676 GGAAAGTTTTTCCCTCTCGTTAG 57.391 43.478 9.00 0.00 32.48 2.34
367 368 5.711506 TCGGTTATTAGGGGAAAGTTTTTCC 59.288 40.000 11.28 11.28 34.91 3.13
368 369 6.615088 GTCGGTTATTAGGGGAAAGTTTTTC 58.385 40.000 0.00 0.00 0.00 2.29
369 370 5.181811 CGTCGGTTATTAGGGGAAAGTTTTT 59.818 40.000 0.00 0.00 0.00 1.94
370 371 4.696877 CGTCGGTTATTAGGGGAAAGTTTT 59.303 41.667 0.00 0.00 0.00 2.43
371 372 4.256110 CGTCGGTTATTAGGGGAAAGTTT 58.744 43.478 0.00 0.00 0.00 2.66
372 373 3.261643 ACGTCGGTTATTAGGGGAAAGTT 59.738 43.478 0.00 0.00 0.00 2.66
373 374 2.833943 ACGTCGGTTATTAGGGGAAAGT 59.166 45.455 0.00 0.00 0.00 2.66
374 375 3.131755 AGACGTCGGTTATTAGGGGAAAG 59.868 47.826 10.46 0.00 0.00 2.62
375 376 3.099141 AGACGTCGGTTATTAGGGGAAA 58.901 45.455 10.46 0.00 0.00 3.13
376 377 2.428171 CAGACGTCGGTTATTAGGGGAA 59.572 50.000 10.46 0.00 0.00 3.97
377 378 2.026641 CAGACGTCGGTTATTAGGGGA 58.973 52.381 10.46 0.00 0.00 4.81
378 379 1.537562 GCAGACGTCGGTTATTAGGGG 60.538 57.143 17.03 0.00 0.00 4.79
379 380 1.537562 GGCAGACGTCGGTTATTAGGG 60.538 57.143 17.03 0.00 0.00 3.53
380 381 1.407979 AGGCAGACGTCGGTTATTAGG 59.592 52.381 17.03 0.00 0.00 2.69
381 382 2.865343 AGGCAGACGTCGGTTATTAG 57.135 50.000 17.03 0.00 0.00 1.73
382 383 3.194116 AGAAAGGCAGACGTCGGTTATTA 59.806 43.478 17.03 0.00 0.00 0.98
383 384 2.028385 AGAAAGGCAGACGTCGGTTATT 60.028 45.455 17.03 9.18 0.00 1.40
384 385 1.549170 AGAAAGGCAGACGTCGGTTAT 59.451 47.619 17.03 0.00 0.00 1.89
385 386 0.963962 AGAAAGGCAGACGTCGGTTA 59.036 50.000 17.03 0.00 0.00 2.85
386 387 0.106149 AAGAAAGGCAGACGTCGGTT 59.894 50.000 17.03 3.73 0.00 4.44
387 388 0.963962 TAAGAAAGGCAGACGTCGGT 59.036 50.000 17.03 0.00 0.00 4.69
388 389 2.074547 TTAAGAAAGGCAGACGTCGG 57.925 50.000 11.64 11.64 0.00 4.79
389 390 2.348666 CCATTAAGAAAGGCAGACGTCG 59.651 50.000 10.46 6.47 0.00 5.12
390 391 3.596214 TCCATTAAGAAAGGCAGACGTC 58.404 45.455 7.70 7.70 0.00 4.34
391 392 3.695830 TCCATTAAGAAAGGCAGACGT 57.304 42.857 0.00 0.00 0.00 4.34
392 393 3.181506 GCTTCCATTAAGAAAGGCAGACG 60.182 47.826 0.00 0.00 37.38 4.18
393 394 3.181506 CGCTTCCATTAAGAAAGGCAGAC 60.182 47.826 0.00 0.00 37.38 3.51
394 395 3.009723 CGCTTCCATTAAGAAAGGCAGA 58.990 45.455 0.00 0.00 37.38 4.26
395 396 2.749621 ACGCTTCCATTAAGAAAGGCAG 59.250 45.455 0.00 0.00 37.38 4.85
396 397 2.790433 ACGCTTCCATTAAGAAAGGCA 58.210 42.857 0.00 0.00 37.38 4.75
397 398 3.057526 ACAACGCTTCCATTAAGAAAGGC 60.058 43.478 0.00 0.00 37.38 4.35
398 399 4.669197 CGACAACGCTTCCATTAAGAAAGG 60.669 45.833 0.00 0.00 37.38 3.11
399 400 4.394795 CGACAACGCTTCCATTAAGAAAG 58.605 43.478 0.00 0.00 37.38 2.62
400 401 4.398549 CGACAACGCTTCCATTAAGAAA 57.601 40.909 0.00 0.00 37.38 2.52
416 417 1.911293 GAATGGCTTGCTCGCGACAA 61.911 55.000 3.71 13.91 0.00 3.18
435 436 2.134346 CAAAACAAAGATTGGGCCGTG 58.866 47.619 0.00 0.00 34.12 4.94
455 456 6.569801 GCAAAGATACCCACCACTAAAAAGAC 60.570 42.308 0.00 0.00 0.00 3.01
462 463 3.178046 TCAGCAAAGATACCCACCACTA 58.822 45.455 0.00 0.00 0.00 2.74
529 530 2.418609 CCGATGCAGGTGATGTCTTGTA 60.419 50.000 0.00 0.00 0.00 2.41
541 542 4.899239 GGGAGCGACCGATGCAGG 62.899 72.222 1.28 0.00 40.11 4.85
570 580 1.002792 GTTCGTGTGAGGGTTTTCAGC 60.003 52.381 0.00 0.00 0.00 4.26
584 594 0.982673 CGCTAGGTCTTTCGTTCGTG 59.017 55.000 0.00 0.00 0.00 4.35
612 623 1.209383 CCAGTCGCGAGAGACGAAA 59.791 57.895 10.24 0.00 45.26 3.46
697 708 0.468029 GAGAGAGAGGAGAGGCTGGG 60.468 65.000 0.00 0.00 0.00 4.45
698 709 0.552848 AGAGAGAGAGGAGAGGCTGG 59.447 60.000 0.00 0.00 0.00 4.85
700 711 1.215423 GGAAGAGAGAGAGGAGAGGCT 59.785 57.143 0.00 0.00 0.00 4.58
701 712 1.692411 GGAAGAGAGAGAGGAGAGGC 58.308 60.000 0.00 0.00 0.00 4.70
702 713 1.133482 GGGGAAGAGAGAGAGGAGAGG 60.133 61.905 0.00 0.00 0.00 3.69
703 714 1.133482 GGGGGAAGAGAGAGAGGAGAG 60.133 61.905 0.00 0.00 0.00 3.20
704 715 0.930726 GGGGGAAGAGAGAGAGGAGA 59.069 60.000 0.00 0.00 0.00 3.71
705 716 3.531821 GGGGGAAGAGAGAGAGGAG 57.468 63.158 0.00 0.00 0.00 3.69
858 870 2.376518 TGACAGGAGAAGGGCTGAAAAT 59.623 45.455 0.00 0.00 0.00 1.82
963 975 1.604915 GAAAGGGACTGAGGCCTCC 59.395 63.158 29.95 15.40 40.86 4.30
1062 1077 2.434185 CTTACGAGCTTGGGCGCA 60.434 61.111 10.83 0.00 44.37 6.09
1083 1098 6.636454 TGAAGAAACTATGGGAGGTAACAT 57.364 37.500 0.00 0.00 41.41 2.71
1088 1103 3.054802 CAGCTGAAGAAACTATGGGAGGT 60.055 47.826 8.42 0.00 0.00 3.85
1092 1107 4.330074 CGTAACAGCTGAAGAAACTATGGG 59.670 45.833 23.35 0.00 0.00 4.00
1097 1112 5.050091 CACATTCGTAACAGCTGAAGAAACT 60.050 40.000 23.35 6.48 0.00 2.66
1098 1113 5.140177 CACATTCGTAACAGCTGAAGAAAC 58.860 41.667 23.35 9.38 0.00 2.78
1113 1133 0.396435 TGGACTGAAGGCACATTCGT 59.604 50.000 0.00 0.00 31.52 3.85
1304 1339 9.607988 ACTCCGAAACTTTTATTTGGAAAATTT 57.392 25.926 0.00 0.00 39.34 1.82
1353 1388 7.876068 TGTGTGTAACTCAGGTTCCTATAAAAG 59.124 37.037 0.00 0.00 35.09 2.27
1477 1748 1.815003 CTTGCCATTCTCAACCTGGAC 59.185 52.381 0.00 0.00 31.38 4.02
1763 2160 8.743714 ACTTCTGGGAAAATCATCTATTGAAAC 58.256 33.333 0.00 0.00 38.03 2.78
1817 2429 4.744570 TCATAGTGGTGCTTAGAAAGTCG 58.255 43.478 0.00 0.00 0.00 4.18
1834 2446 7.334671 GGAAAGAGTTTCTGGTAGGTTTCATAG 59.665 40.741 0.00 0.00 39.59 2.23
1846 2458 3.190118 GCAGACATGGAAAGAGTTTCTGG 59.810 47.826 0.00 0.00 39.59 3.86
1848 2460 4.363991 AGCAGACATGGAAAGAGTTTCT 57.636 40.909 0.00 0.00 39.59 2.52
1948 2572 7.453393 TCTTCTTTGAATGAGAACCATACTGT 58.547 34.615 0.00 0.00 34.45 3.55
2391 3033 4.837860 ACCAGCTCCATTCTAGGAATAGAG 59.162 45.833 9.98 9.98 37.20 2.43
2525 3167 1.001378 GAGCAAACGCCAGTTGTTCAT 60.001 47.619 0.00 0.00 41.05 2.57
2526 3168 0.380378 GAGCAAACGCCAGTTGTTCA 59.620 50.000 0.00 0.00 41.05 3.18
2536 3178 2.031682 ACAAAGTCTGATGAGCAAACGC 60.032 45.455 0.00 0.00 0.00 4.84
2538 3180 7.138692 AGATAACAAAGTCTGATGAGCAAAC 57.861 36.000 0.00 0.00 0.00 2.93
2608 3255 4.836825 TCAGTGAGAAAATTAGGGCAGAG 58.163 43.478 0.00 0.00 0.00 3.35
2693 3342 4.527816 TGCTTGCCTTCAACTGGATTATTT 59.472 37.500 0.00 0.00 0.00 1.40
2764 3415 4.655762 ATTCGAACTACAGCTGCTGATA 57.344 40.909 34.28 20.49 35.18 2.15
2877 3533 1.737735 CTTGGCATCACGACGCTCA 60.738 57.895 0.00 0.00 0.00 4.26
2883 3539 3.243367 CCTTGTTTTTCTTGGCATCACGA 60.243 43.478 0.00 0.00 0.00 4.35
2889 3545 2.106566 TGCTCCTTGTTTTTCTTGGCA 58.893 42.857 0.00 0.00 0.00 4.92
2931 3587 8.982723 ACAGATATTAGCCTTCTCTAGTTTTCA 58.017 33.333 0.00 0.00 0.00 2.69
2938 3594 6.433404 CCGGTTACAGATATTAGCCTTCTCTA 59.567 42.308 0.00 0.00 0.00 2.43
2939 3595 5.244178 CCGGTTACAGATATTAGCCTTCTCT 59.756 44.000 0.00 0.00 0.00 3.10
2950 3619 6.381994 TCCTTAAACTGACCGGTTACAGATAT 59.618 38.462 25.55 14.62 37.54 1.63
3018 3687 8.184192 CCATACACAGGTTTGATAGCTTTAAAG 58.816 37.037 11.02 11.02 30.51 1.85
3024 3693 4.471386 AGTCCATACACAGGTTTGATAGCT 59.529 41.667 0.00 0.00 34.10 3.32
3042 3711 1.403647 CGATACTGACGCCAAAGTCCA 60.404 52.381 0.00 0.00 40.26 4.02
3049 3718 2.004808 CTGCCTCGATACTGACGCCA 62.005 60.000 0.00 0.00 0.00 5.69
3053 3722 3.254657 AGATAAGCTGCCTCGATACTGAC 59.745 47.826 0.00 0.00 0.00 3.51
3088 3757 6.949715 ACATATGTTGCTCCAAAATTCCATT 58.050 32.000 1.41 0.00 0.00 3.16
3124 3793 8.556194 TCAGTGCTAATAACAACAGTAAAACAG 58.444 33.333 0.00 0.00 0.00 3.16
3146 3815 1.402259 CTCTCGTCGGCTAATGTCAGT 59.598 52.381 0.00 0.00 0.00 3.41
3151 3821 1.658717 CGCCTCTCGTCGGCTAATG 60.659 63.158 9.84 0.00 45.37 1.90
3167 3837 2.162208 ACCATGTCATCACAACAATCGC 59.838 45.455 0.00 0.00 35.64 4.58
3171 3841 6.707440 AACTTAACCATGTCATCACAACAA 57.293 33.333 0.00 0.00 35.64 2.83
3196 3866 2.080693 GGCACAACGTCCATGATAACA 58.919 47.619 0.00 0.00 0.00 2.41
3228 3898 1.410517 TGCAAAAACGGAGGAAATGCA 59.589 42.857 0.00 0.00 39.73 3.96
3233 3903 1.770294 AGGTTGCAAAAACGGAGGAA 58.230 45.000 0.00 0.00 0.00 3.36
3240 3910 8.872845 CATGGATAAAGATAAGGTTGCAAAAAC 58.127 33.333 0.00 0.00 0.00 2.43
3254 3924 7.285401 GGTATTCACAACACCATGGATAAAGAT 59.715 37.037 21.47 5.24 32.32 2.40
3278 3949 1.000955 CACTTTCACAGAGCCTACGGT 59.999 52.381 0.00 0.00 0.00 4.83
3462 5961 8.922058 TTTAGTTGAGACTTCGTATATGGTTC 57.078 34.615 0.00 0.00 37.33 3.62
3607 6114 2.575993 CTCCACTGGCAGGTCTCG 59.424 66.667 20.34 1.42 0.00 4.04
3649 6159 8.217111 TGGTAGCATTACATCCAAATTGAGATA 58.783 33.333 0.00 0.00 0.00 1.98
3687 6197 1.676529 CTTGCTTCCATCCAGAGCATG 59.323 52.381 0.00 0.00 44.95 4.06
3689 6199 0.679002 GCTTGCTTCCATCCAGAGCA 60.679 55.000 0.00 0.00 44.03 4.26
3691 6201 1.380524 CAGCTTGCTTCCATCCAGAG 58.619 55.000 0.00 0.00 0.00 3.35
3692 6202 0.679002 GCAGCTTGCTTCCATCCAGA 60.679 55.000 0.00 0.00 40.96 3.86
3693 6203 1.664321 GGCAGCTTGCTTCCATCCAG 61.664 60.000 6.43 0.00 44.28 3.86
3695 6205 1.041447 ATGGCAGCTTGCTTCCATCC 61.041 55.000 18.43 4.82 44.28 3.51
3697 6207 0.822164 GAATGGCAGCTTGCTTCCAT 59.178 50.000 18.43 18.43 44.28 3.41
3737 6314 1.098129 GCCGGGAAGATGAAGGAAGC 61.098 60.000 2.18 0.00 0.00 3.86
3742 6319 1.202687 TGCTATGCCGGGAAGATGAAG 60.203 52.381 0.00 0.00 0.00 3.02
3744 6321 0.394192 CTGCTATGCCGGGAAGATGA 59.606 55.000 0.00 0.00 0.00 2.92
3745 6322 1.233285 GCTGCTATGCCGGGAAGATG 61.233 60.000 0.00 0.00 0.00 2.90
3746 6323 1.072159 GCTGCTATGCCGGGAAGAT 59.928 57.895 0.00 0.00 0.00 2.40
3747 6324 2.066393 AGCTGCTATGCCGGGAAGA 61.066 57.895 0.00 0.00 0.00 2.87
3748 6325 1.890979 CAGCTGCTATGCCGGGAAG 60.891 63.158 0.00 0.00 0.00 3.46
3749 6326 2.190313 CAGCTGCTATGCCGGGAA 59.810 61.111 0.00 0.00 0.00 3.97
3750 6327 3.865383 CCAGCTGCTATGCCGGGA 61.865 66.667 8.66 0.00 31.91 5.14
3751 6328 4.943252 CCCAGCTGCTATGCCGGG 62.943 72.222 8.66 4.51 43.36 5.73
3753 6330 4.862447 TGCCCAGCTGCTATGCCG 62.862 66.667 8.66 0.00 0.00 5.69
3788 6365 0.804989 GAATCAAAGCCACACGAGGG 59.195 55.000 0.00 0.00 0.00 4.30
3879 6461 1.883732 GGAGCTCGCGCCATAGATA 59.116 57.895 7.83 0.00 35.90 1.98
3883 6465 4.266070 GTCGGAGCTCGCGCCATA 62.266 66.667 16.74 0.00 39.05 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.