Multiple sequence alignment - TraesCS5B01G208500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G208500 chr5B 100.000 4357 0 0 1 4357 378067311 378071667 0.000000e+00 8046.0
1 TraesCS5B01G208500 chr5B 84.826 2781 260 77 921 3604 378510486 378513201 0.000000e+00 2649.0
2 TraesCS5B01G208500 chr5B 83.307 1881 174 75 615 2447 377977813 377979601 0.000000e+00 1605.0
3 TraesCS5B01G208500 chr5B 91.286 700 60 1 2596 3295 377979603 377980301 0.000000e+00 953.0
4 TraesCS5B01G208500 chr5B 86.154 520 50 14 1145 1664 377698698 377699195 3.830000e-150 542.0
5 TraesCS5B01G208500 chr5B 79.890 726 138 7 2632 3353 377845132 377845853 3.860000e-145 525.0
6 TraesCS5B01G208500 chr5B 87.500 376 42 5 3985 4357 311547260 311547633 3.110000e-116 429.0
7 TraesCS5B01G208500 chr5B 83.721 215 23 8 419 624 377976204 377976415 4.450000e-45 193.0
8 TraesCS5B01G208500 chr5B 84.416 77 6 3 830 905 378510363 378510434 2.170000e-08 71.3
9 TraesCS5B01G208500 chr5D 85.281 2772 261 65 921 3595 326118029 326120750 0.000000e+00 2723.0
10 TraesCS5B01G208500 chr5D 89.512 1764 153 15 2604 4357 325664869 325666610 0.000000e+00 2204.0
11 TraesCS5B01G208500 chr5D 88.649 1066 73 29 389 1436 325663055 325664090 0.000000e+00 1254.0
12 TraesCS5B01G208500 chr5D 92.901 817 53 4 2450 3263 325648052 325648866 0.000000e+00 1182.0
13 TraesCS5B01G208500 chr5D 87.397 968 57 32 702 1665 325646549 325647455 0.000000e+00 1051.0
14 TraesCS5B01G208500 chr5D 88.075 587 46 10 1832 2414 325647485 325648051 0.000000e+00 675.0
15 TraesCS5B01G208500 chr5D 91.745 424 27 5 1832 2252 325664407 325664825 2.260000e-162 582.0
16 TraesCS5B01G208500 chr5D 85.660 523 50 17 1145 1664 325422824 325423324 1.070000e-145 527.0
17 TraesCS5B01G208500 chr5D 89.137 313 25 9 3301 3607 325652098 325652407 8.840000e-102 381.0
18 TraesCS5B01G208500 chr5D 95.745 188 7 1 1480 1667 325664098 325664284 7.080000e-78 302.0
19 TraesCS5B01G208500 chr5D 90.526 190 11 1 395 577 325902815 325903004 1.210000e-60 244.0
20 TraesCS5B01G208500 chr5D 84.586 266 18 9 401 647 325646209 325646470 4.350000e-60 243.0
21 TraesCS5B01G208500 chr5D 88.235 153 13 3 30 177 341715372 341715524 1.250000e-40 178.0
22 TraesCS5B01G208500 chr5D 87.611 113 14 0 3256 3368 325651990 325652102 9.830000e-27 132.0
23 TraesCS5B01G208500 chr5D 86.250 80 5 3 830 908 326117906 326117980 1.000000e-11 82.4
24 TraesCS5B01G208500 chr5A 89.922 1786 158 13 1832 3607 430957945 430956172 0.000000e+00 2281.0
25 TraesCS5B01G208500 chr5A 87.781 1203 125 15 2419 3604 430507015 430505818 0.000000e+00 1387.0
26 TraesCS5B01G208500 chr5A 83.366 1539 138 61 927 2412 430508527 430507054 0.000000e+00 1315.0
27 TraesCS5B01G208500 chr5A 85.714 1288 106 36 393 1646 431045704 431044461 0.000000e+00 1288.0
28 TraesCS5B01G208500 chr5A 89.598 1019 95 9 2596 3607 431029511 431028497 0.000000e+00 1284.0
29 TraesCS5B01G208500 chr5A 89.070 613 42 11 826 1437 430958782 430958194 0.000000e+00 737.0
30 TraesCS5B01G208500 chr5A 91.274 424 29 6 1832 2252 431029962 431029544 4.890000e-159 571.0
31 TraesCS5B01G208500 chr5A 86.015 522 60 13 1145 1664 423680522 423681032 8.240000e-152 547.0
32 TraesCS5B01G208500 chr5A 87.711 415 22 9 389 785 430959193 430958790 1.430000e-124 457.0
33 TraesCS5B01G208500 chr5A 87.500 376 42 5 3985 4357 588729399 588729772 3.110000e-116 429.0
34 TraesCS5B01G208500 chr5A 87.569 362 42 3 3999 4357 669121170 669120809 2.420000e-112 416.0
35 TraesCS5B01G208500 chr5A 96.809 188 6 0 1480 1667 430958187 430958000 9.100000e-82 315.0
36 TraesCS5B01G208500 chr5A 85.000 80 6 3 830 908 430508660 430508586 4.670000e-10 76.8
37 TraesCS5B01G208500 chr4A 87.080 387 42 7 3977 4357 601158917 601158533 8.660000e-117 431.0
38 TraesCS5B01G208500 chr7D 86.788 386 44 6 3977 4357 627403968 627404351 1.450000e-114 424.0
39 TraesCS5B01G208500 chr3D 86.649 382 46 4 3977 4355 553334252 553333873 6.740000e-113 418.0
40 TraesCS5B01G208500 chr3D 86.702 376 45 4 3985 4357 562174124 562173751 3.140000e-111 412.0
41 TraesCS5B01G208500 chr3D 88.079 151 12 4 30 175 11973303 11973154 1.610000e-39 174.0
42 TraesCS5B01G208500 chr2D 86.968 376 44 5 3985 4357 619938242 619938615 6.740000e-113 418.0
43 TraesCS5B01G208500 chr7A 80.658 486 66 12 1930 2412 22039360 22039820 6.930000e-93 351.0
44 TraesCS5B01G208500 chr1A 83.562 292 40 7 1929 2220 50749059 50748776 2.580000e-67 267.0
45 TraesCS5B01G208500 chr2B 93.243 148 10 0 30 177 250534285 250534138 7.340000e-53 219.0
46 TraesCS5B01G208500 chr2A 91.892 148 12 0 30 177 740837013 740836866 1.590000e-49 207.0
47 TraesCS5B01G208500 chr3B 85.556 180 21 5 21 196 347880147 347879969 2.680000e-42 183.0
48 TraesCS5B01G208500 chr3B 88.514 148 14 3 30 175 766954069 766953923 4.480000e-40 176.0
49 TraesCS5B01G208500 chr6A 87.838 148 15 3 31 177 134995780 134995925 2.080000e-38 171.0
50 TraesCS5B01G208500 chr6B 87.162 148 19 0 30 177 641448641 641448494 7.490000e-38 169.0
51 TraesCS5B01G208500 chr6B 86.928 153 14 6 30 177 577988224 577988073 2.700000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G208500 chr5B 378067311 378071667 4356 False 8046.000000 8046 100.000000 1 4357 1 chr5B.!!$F4 4356
1 TraesCS5B01G208500 chr5B 378510363 378513201 2838 False 1360.150000 2649 84.621000 830 3604 2 chr5B.!!$F6 2774
2 TraesCS5B01G208500 chr5B 377976204 377980301 4097 False 917.000000 1605 86.104667 419 3295 3 chr5B.!!$F5 2876
3 TraesCS5B01G208500 chr5B 377845132 377845853 721 False 525.000000 525 79.890000 2632 3353 1 chr5B.!!$F3 721
4 TraesCS5B01G208500 chr5D 326117906 326120750 2844 False 1402.700000 2723 85.765500 830 3595 2 chr5D.!!$F6 2765
5 TraesCS5B01G208500 chr5D 325663055 325666610 3555 False 1085.500000 2204 91.412750 389 4357 4 chr5D.!!$F5 3968
6 TraesCS5B01G208500 chr5D 325646209 325652407 6198 False 610.666667 1182 88.284500 401 3607 6 chr5D.!!$F4 3206
7 TraesCS5B01G208500 chr5D 325422824 325423324 500 False 527.000000 527 85.660000 1145 1664 1 chr5D.!!$F1 519
8 TraesCS5B01G208500 chr5A 431044461 431045704 1243 True 1288.000000 1288 85.714000 393 1646 1 chr5A.!!$R1 1253
9 TraesCS5B01G208500 chr5A 430956172 430959193 3021 True 947.500000 2281 90.878000 389 3607 4 chr5A.!!$R4 3218
10 TraesCS5B01G208500 chr5A 431028497 431029962 1465 True 927.500000 1284 90.436000 1832 3607 2 chr5A.!!$R5 1775
11 TraesCS5B01G208500 chr5A 430505818 430508660 2842 True 926.266667 1387 85.382333 830 3604 3 chr5A.!!$R3 2774
12 TraesCS5B01G208500 chr5A 423680522 423681032 510 False 547.000000 547 86.015000 1145 1664 1 chr5A.!!$F1 519

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
341 342 0.033601 ATTGCCGCCCCAAATAGACA 60.034 50.0 0.00 0.0 0.00 3.41 F
908 2451 0.108424 CCGAGCTCACCTTCTCCTTG 60.108 60.0 15.40 0.0 0.00 3.61 F
2197 3850 0.107361 GTAAGCCAGCCACCCGTAAT 60.107 55.0 0.00 0.0 0.00 1.89 F
3060 4761 0.466124 GTCTAGACCCACCATGAGGC 59.534 60.0 12.13 0.0 39.06 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1875 3495 1.000274 GCAGGCGTTGTTCTTTTGGAT 60.000 47.619 0.00 0.00 0.00 3.41 R
2720 4419 0.452585 TTGTCACGTGTGTCTCGTCA 59.547 50.000 16.51 1.15 39.55 4.35 R
3062 4763 0.036294 GCTCGAGGGCTTTTACCACT 60.036 55.000 15.58 0.00 0.00 4.00 R
4293 9205 0.391130 TCTTCGGTGGATTTGCTCGG 60.391 55.000 0.00 0.00 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.776656 AACGTTACGCTGCGATCC 58.223 55.556 30.47 13.63 0.00 3.36
18 19 1.080366 AACGTTACGCTGCGATCCA 60.080 52.632 30.47 7.66 0.00 3.41
19 20 1.076533 AACGTTACGCTGCGATCCAG 61.077 55.000 30.47 16.78 44.67 3.86
40 41 4.507794 CGGCGACCGTTCTTTTTG 57.492 55.556 0.00 0.00 42.73 2.44
41 42 1.082366 CGGCGACCGTTCTTTTTGG 60.082 57.895 0.00 0.00 42.73 3.28
42 43 1.500512 CGGCGACCGTTCTTTTTGGA 61.501 55.000 0.00 0.00 42.73 3.53
43 44 0.237498 GGCGACCGTTCTTTTTGGAG 59.763 55.000 0.00 0.00 0.00 3.86
44 45 0.237498 GCGACCGTTCTTTTTGGAGG 59.763 55.000 0.00 0.00 0.00 4.30
45 46 0.237498 CGACCGTTCTTTTTGGAGGC 59.763 55.000 0.00 0.00 0.00 4.70
46 47 1.605753 GACCGTTCTTTTTGGAGGCT 58.394 50.000 0.00 0.00 0.00 4.58
47 48 1.266989 GACCGTTCTTTTTGGAGGCTG 59.733 52.381 0.00 0.00 0.00 4.85
48 49 0.598065 CCGTTCTTTTTGGAGGCTGG 59.402 55.000 0.00 0.00 0.00 4.85
49 50 0.039165 CGTTCTTTTTGGAGGCTGGC 60.039 55.000 0.00 0.00 0.00 4.85
50 51 1.039856 GTTCTTTTTGGAGGCTGGCA 58.960 50.000 3.38 0.00 0.00 4.92
51 52 1.620323 GTTCTTTTTGGAGGCTGGCAT 59.380 47.619 3.38 0.00 0.00 4.40
52 53 1.259609 TCTTTTTGGAGGCTGGCATG 58.740 50.000 3.38 0.00 0.00 4.06
53 54 0.248289 CTTTTTGGAGGCTGGCATGG 59.752 55.000 3.38 0.00 0.00 3.66
54 55 1.193462 TTTTTGGAGGCTGGCATGGG 61.193 55.000 3.38 0.00 0.00 4.00
55 56 2.384933 TTTTGGAGGCTGGCATGGGT 62.385 55.000 3.38 0.00 0.00 4.51
56 57 3.588817 TTGGAGGCTGGCATGGGTG 62.589 63.158 3.38 0.00 0.00 4.61
86 87 4.659874 CGTGTGCCGGCGACAAAC 62.660 66.667 26.20 17.88 0.00 2.93
87 88 4.322385 GTGTGCCGGCGACAAACC 62.322 66.667 26.20 14.68 0.00 3.27
88 89 4.555709 TGTGCCGGCGACAAACCT 62.556 61.111 23.90 0.00 0.00 3.50
89 90 2.357760 GTGCCGGCGACAAACCTA 60.358 61.111 23.90 0.00 0.00 3.08
90 91 1.743995 GTGCCGGCGACAAACCTAT 60.744 57.895 23.90 0.00 0.00 2.57
91 92 1.003112 TGCCGGCGACAAACCTATT 60.003 52.632 23.90 0.00 0.00 1.73
92 93 1.022451 TGCCGGCGACAAACCTATTC 61.022 55.000 23.90 0.00 0.00 1.75
93 94 1.022451 GCCGGCGACAAACCTATTCA 61.022 55.000 12.58 0.00 0.00 2.57
94 95 1.663695 CCGGCGACAAACCTATTCAT 58.336 50.000 9.30 0.00 0.00 2.57
95 96 2.014128 CCGGCGACAAACCTATTCATT 58.986 47.619 9.30 0.00 0.00 2.57
96 97 2.422127 CCGGCGACAAACCTATTCATTT 59.578 45.455 9.30 0.00 0.00 2.32
97 98 3.119637 CCGGCGACAAACCTATTCATTTT 60.120 43.478 9.30 0.00 0.00 1.82
98 99 3.851403 CGGCGACAAACCTATTCATTTTG 59.149 43.478 0.00 0.00 36.49 2.44
99 100 4.173256 GGCGACAAACCTATTCATTTTGG 58.827 43.478 0.00 0.00 35.03 3.28
100 101 4.082463 GGCGACAAACCTATTCATTTTGGA 60.082 41.667 0.00 0.00 35.03 3.53
101 102 5.095490 GCGACAAACCTATTCATTTTGGAG 58.905 41.667 0.00 0.00 35.03 3.86
102 103 5.640732 CGACAAACCTATTCATTTTGGAGG 58.359 41.667 0.00 0.00 35.03 4.30
103 104 5.405935 ACAAACCTATTCATTTTGGAGGC 57.594 39.130 0.00 0.00 35.03 4.70
104 105 5.086621 ACAAACCTATTCATTTTGGAGGCT 58.913 37.500 0.00 0.00 35.03 4.58
105 106 5.047092 ACAAACCTATTCATTTTGGAGGCTG 60.047 40.000 0.00 0.00 35.03 4.85
106 107 4.591321 ACCTATTCATTTTGGAGGCTGA 57.409 40.909 0.00 0.00 0.00 4.26
107 108 4.273318 ACCTATTCATTTTGGAGGCTGAC 58.727 43.478 0.00 0.00 0.00 3.51
108 109 4.018050 ACCTATTCATTTTGGAGGCTGACT 60.018 41.667 0.00 0.00 0.00 3.41
109 110 4.337555 CCTATTCATTTTGGAGGCTGACTG 59.662 45.833 0.00 0.00 0.00 3.51
110 111 2.957402 TCATTTTGGAGGCTGACTGT 57.043 45.000 0.00 0.00 0.00 3.55
111 112 2.507484 TCATTTTGGAGGCTGACTGTG 58.493 47.619 0.00 0.00 0.00 3.66
112 113 2.158623 TCATTTTGGAGGCTGACTGTGT 60.159 45.455 0.00 0.00 0.00 3.72
113 114 2.435372 TTTTGGAGGCTGACTGTGTT 57.565 45.000 0.00 0.00 0.00 3.32
114 115 1.679139 TTTGGAGGCTGACTGTGTTG 58.321 50.000 0.00 0.00 0.00 3.33
115 116 0.819259 TTGGAGGCTGACTGTGTTGC 60.819 55.000 0.00 0.00 0.00 4.17
116 117 1.968540 GGAGGCTGACTGTGTTGCC 60.969 63.158 0.00 7.07 45.21 4.52
118 119 3.357079 GGCTGACTGTGTTGCCGG 61.357 66.667 0.00 0.00 35.79 6.13
119 120 4.030452 GCTGACTGTGTTGCCGGC 62.030 66.667 22.73 22.73 0.00 6.13
120 121 3.357079 CTGACTGTGTTGCCGGCC 61.357 66.667 26.77 10.34 0.00 6.13
143 144 3.049674 CCGTGTTGCTGGCGACAT 61.050 61.111 17.19 0.00 41.74 3.06
144 145 1.739929 CCGTGTTGCTGGCGACATA 60.740 57.895 17.19 0.00 41.74 2.29
145 146 1.419922 CGTGTTGCTGGCGACATAC 59.580 57.895 17.19 6.28 41.74 2.39
146 147 1.794222 GTGTTGCTGGCGACATACC 59.206 57.895 17.19 3.19 41.74 2.73
147 148 0.673644 GTGTTGCTGGCGACATACCT 60.674 55.000 17.19 0.00 41.74 3.08
148 149 0.899019 TGTTGCTGGCGACATACCTA 59.101 50.000 11.17 0.00 41.51 3.08
149 150 1.484653 TGTTGCTGGCGACATACCTAT 59.515 47.619 11.17 0.00 41.51 2.57
150 151 2.093181 TGTTGCTGGCGACATACCTATT 60.093 45.455 11.17 0.00 41.51 1.73
151 152 2.526304 TGCTGGCGACATACCTATTC 57.474 50.000 0.00 0.00 41.51 1.75
152 153 1.760029 TGCTGGCGACATACCTATTCA 59.240 47.619 0.00 0.00 41.51 2.57
153 154 2.368548 TGCTGGCGACATACCTATTCAT 59.631 45.455 0.00 0.00 41.51 2.57
154 155 3.181455 TGCTGGCGACATACCTATTCATT 60.181 43.478 0.00 0.00 41.51 2.57
155 156 3.815401 GCTGGCGACATACCTATTCATTT 59.185 43.478 0.00 0.00 41.51 2.32
156 157 4.275936 GCTGGCGACATACCTATTCATTTT 59.724 41.667 0.00 0.00 41.51 1.82
157 158 5.749596 TGGCGACATACCTATTCATTTTG 57.250 39.130 0.00 0.00 33.40 2.44
158 159 4.578516 TGGCGACATACCTATTCATTTTGG 59.421 41.667 0.00 0.00 33.40 3.28
159 160 4.819630 GGCGACATACCTATTCATTTTGGA 59.180 41.667 0.00 0.00 0.00 3.53
160 161 5.049405 GGCGACATACCTATTCATTTTGGAG 60.049 44.000 0.00 0.00 0.00 3.86
161 162 5.049405 GCGACATACCTATTCATTTTGGAGG 60.049 44.000 0.00 0.00 0.00 4.30
162 163 5.049405 CGACATACCTATTCATTTTGGAGGC 60.049 44.000 0.00 0.00 0.00 4.70
163 164 6.018433 ACATACCTATTCATTTTGGAGGCT 57.982 37.500 0.00 0.00 0.00 4.58
164 165 5.829924 ACATACCTATTCATTTTGGAGGCTG 59.170 40.000 0.00 0.00 0.00 4.85
165 166 3.635591 ACCTATTCATTTTGGAGGCTGG 58.364 45.455 0.00 0.00 0.00 4.85
166 167 2.363359 CCTATTCATTTTGGAGGCTGGC 59.637 50.000 0.00 0.00 0.00 4.85
167 168 2.242882 ATTCATTTTGGAGGCTGGCT 57.757 45.000 2.24 2.24 0.00 4.75
168 169 1.259609 TTCATTTTGGAGGCTGGCTG 58.740 50.000 9.06 0.00 0.00 4.85
169 170 0.112995 TCATTTTGGAGGCTGGCTGT 59.887 50.000 9.06 0.00 0.00 4.40
170 171 0.245539 CATTTTGGAGGCTGGCTGTG 59.754 55.000 9.06 0.00 0.00 3.66
171 172 0.178953 ATTTTGGAGGCTGGCTGTGT 60.179 50.000 9.06 0.00 0.00 3.72
172 173 0.396974 TTTTGGAGGCTGGCTGTGTT 60.397 50.000 9.06 0.00 0.00 3.32
173 174 1.108727 TTTGGAGGCTGGCTGTGTTG 61.109 55.000 9.06 0.00 0.00 3.33
174 175 3.368571 GGAGGCTGGCTGTGTTGC 61.369 66.667 9.06 0.00 0.00 4.17
181 182 4.012895 GGCTGTGTTGCCGTCGTG 62.013 66.667 0.00 0.00 43.74 4.35
182 183 2.964925 GCTGTGTTGCCGTCGTGA 60.965 61.111 0.00 0.00 0.00 4.35
183 184 2.530497 GCTGTGTTGCCGTCGTGAA 61.530 57.895 0.00 0.00 0.00 3.18
184 185 1.841663 GCTGTGTTGCCGTCGTGAAT 61.842 55.000 0.00 0.00 0.00 2.57
185 186 0.586319 CTGTGTTGCCGTCGTGAATT 59.414 50.000 0.00 0.00 0.00 2.17
186 187 1.795872 CTGTGTTGCCGTCGTGAATTA 59.204 47.619 0.00 0.00 0.00 1.40
187 188 1.795872 TGTGTTGCCGTCGTGAATTAG 59.204 47.619 0.00 0.00 0.00 1.73
188 189 1.127951 GTGTTGCCGTCGTGAATTAGG 59.872 52.381 0.00 0.00 0.00 2.69
189 190 0.725117 GTTGCCGTCGTGAATTAGGG 59.275 55.000 0.00 0.00 0.00 3.53
190 191 1.022451 TTGCCGTCGTGAATTAGGGC 61.022 55.000 3.24 3.24 44.88 5.19
191 192 2.178235 GCCGTCGTGAATTAGGGCC 61.178 63.158 0.00 0.00 40.06 5.80
192 193 1.881252 CCGTCGTGAATTAGGGCCG 60.881 63.158 0.00 0.00 0.00 6.13
193 194 2.522638 CGTCGTGAATTAGGGCCGC 61.523 63.158 0.00 0.00 0.00 6.53
194 195 1.153429 GTCGTGAATTAGGGCCGCT 60.153 57.895 0.00 0.00 0.00 5.52
195 196 1.153449 TCGTGAATTAGGGCCGCTG 60.153 57.895 0.00 0.00 0.00 5.18
196 197 1.153449 CGTGAATTAGGGCCGCTGA 60.153 57.895 0.00 0.00 0.00 4.26
197 198 1.429148 CGTGAATTAGGGCCGCTGAC 61.429 60.000 0.00 0.00 0.00 3.51
198 199 0.392461 GTGAATTAGGGCCGCTGACA 60.392 55.000 0.00 0.00 0.00 3.58
199 200 0.546122 TGAATTAGGGCCGCTGACAT 59.454 50.000 0.00 0.00 0.00 3.06
200 201 0.947244 GAATTAGGGCCGCTGACATG 59.053 55.000 0.00 0.00 0.00 3.21
201 202 0.546122 AATTAGGGCCGCTGACATGA 59.454 50.000 0.00 0.00 0.00 3.07
202 203 0.546122 ATTAGGGCCGCTGACATGAA 59.454 50.000 0.00 0.00 0.00 2.57
203 204 0.392461 TTAGGGCCGCTGACATGAAC 60.392 55.000 0.00 0.00 0.00 3.18
204 205 1.264749 TAGGGCCGCTGACATGAACT 61.265 55.000 0.00 0.00 0.00 3.01
205 206 1.220749 GGGCCGCTGACATGAACTA 59.779 57.895 0.00 0.00 0.00 2.24
206 207 1.090052 GGGCCGCTGACATGAACTAC 61.090 60.000 0.00 0.00 0.00 2.73
207 208 1.421410 GGCCGCTGACATGAACTACG 61.421 60.000 0.00 0.00 0.00 3.51
208 209 1.421410 GCCGCTGACATGAACTACGG 61.421 60.000 0.00 7.13 41.97 4.02
209 210 0.806102 CCGCTGACATGAACTACGGG 60.806 60.000 0.00 0.00 35.63 5.28
210 211 1.421410 CGCTGACATGAACTACGGGC 61.421 60.000 0.00 0.00 0.00 6.13
211 212 0.108138 GCTGACATGAACTACGGGCT 60.108 55.000 0.00 0.00 0.00 5.19
212 213 1.645034 CTGACATGAACTACGGGCTG 58.355 55.000 0.00 0.00 0.00 4.85
213 214 0.973632 TGACATGAACTACGGGCTGT 59.026 50.000 3.57 3.57 0.00 4.40
214 215 1.346395 TGACATGAACTACGGGCTGTT 59.654 47.619 3.31 0.00 0.00 3.16
215 216 1.732259 GACATGAACTACGGGCTGTTG 59.268 52.381 3.31 5.08 0.00 3.33
216 217 1.071699 ACATGAACTACGGGCTGTTGT 59.928 47.619 3.31 5.89 38.20 3.32
217 218 2.151202 CATGAACTACGGGCTGTTGTT 58.849 47.619 23.06 23.06 46.81 2.83
218 219 3.244284 ACATGAACTACGGGCTGTTGTTA 60.244 43.478 22.93 13.37 44.71 2.41
219 220 3.688694 TGAACTACGGGCTGTTGTTAT 57.311 42.857 22.93 5.68 44.71 1.89
220 221 4.010667 TGAACTACGGGCTGTTGTTATT 57.989 40.909 22.93 4.98 44.71 1.40
221 222 3.998341 TGAACTACGGGCTGTTGTTATTC 59.002 43.478 22.93 13.49 44.71 1.75
222 223 2.613691 ACTACGGGCTGTTGTTATTCG 58.386 47.619 3.31 0.00 32.40 3.34
223 224 2.231964 ACTACGGGCTGTTGTTATTCGA 59.768 45.455 3.31 0.00 32.40 3.71
224 225 2.172851 ACGGGCTGTTGTTATTCGAA 57.827 45.000 0.00 0.00 0.00 3.71
225 226 2.706890 ACGGGCTGTTGTTATTCGAAT 58.293 42.857 16.15 16.15 0.00 3.34
226 227 3.864243 ACGGGCTGTTGTTATTCGAATA 58.136 40.909 13.85 13.85 0.00 1.75
227 228 4.448210 ACGGGCTGTTGTTATTCGAATAT 58.552 39.130 18.18 0.00 0.00 1.28
228 229 4.879545 ACGGGCTGTTGTTATTCGAATATT 59.120 37.500 18.18 0.00 0.00 1.28
229 230 5.355910 ACGGGCTGTTGTTATTCGAATATTT 59.644 36.000 18.18 0.00 0.00 1.40
230 231 5.681105 CGGGCTGTTGTTATTCGAATATTTG 59.319 40.000 18.18 7.47 0.00 2.32
231 232 5.458779 GGGCTGTTGTTATTCGAATATTTGC 59.541 40.000 18.18 14.95 0.00 3.68
232 233 5.171337 GGCTGTTGTTATTCGAATATTTGCG 59.829 40.000 18.18 7.40 0.00 4.85
233 234 5.737290 GCTGTTGTTATTCGAATATTTGCGT 59.263 36.000 18.18 0.00 0.00 5.24
234 235 6.250527 GCTGTTGTTATTCGAATATTTGCGTT 59.749 34.615 18.18 0.00 0.00 4.84
235 236 7.201316 GCTGTTGTTATTCGAATATTTGCGTTT 60.201 33.333 18.18 0.00 0.00 3.60
236 237 9.268255 CTGTTGTTATTCGAATATTTGCGTTTA 57.732 29.630 18.18 0.00 0.00 2.01
237 238 9.608617 TGTTGTTATTCGAATATTTGCGTTTAA 57.391 25.926 18.18 0.00 0.00 1.52
240 241 9.279904 TGTTATTCGAATATTTGCGTTTAAAGG 57.720 29.630 18.18 3.51 0.00 3.11
241 242 6.806120 ATTCGAATATTTGCGTTTAAAGGC 57.194 33.333 22.67 22.67 40.04 4.35
242 243 5.298197 TCGAATATTTGCGTTTAAAGGCA 57.702 34.783 26.90 26.90 46.68 4.75
248 249 2.987413 TGCGTTTAAAGGCAGACATG 57.013 45.000 26.90 0.00 43.92 3.21
249 250 2.499197 TGCGTTTAAAGGCAGACATGA 58.501 42.857 26.90 7.04 43.92 3.07
250 251 3.081061 TGCGTTTAAAGGCAGACATGAT 58.919 40.909 26.90 0.00 43.92 2.45
251 252 3.119884 TGCGTTTAAAGGCAGACATGATG 60.120 43.478 26.90 0.00 43.92 3.07
252 253 3.119849 GCGTTTAAAGGCAGACATGATGT 60.120 43.478 24.06 0.00 39.45 3.06
253 254 4.406069 CGTTTAAAGGCAGACATGATGTG 58.594 43.478 1.23 0.00 0.00 3.21
254 255 4.672542 CGTTTAAAGGCAGACATGATGTGG 60.673 45.833 1.23 0.00 0.00 4.17
255 256 1.180029 AAAGGCAGACATGATGTGGC 58.820 50.000 1.23 6.53 46.72 5.01
256 257 3.518003 GGCAGACATGATGTGGCC 58.482 61.111 18.40 18.40 41.00 5.36
257 258 1.378911 GGCAGACATGATGTGGCCA 60.379 57.895 24.75 0.00 43.21 5.36
258 259 1.660560 GGCAGACATGATGTGGCCAC 61.661 60.000 29.67 29.67 43.21 5.01
259 260 0.961857 GCAGACATGATGTGGCCACA 60.962 55.000 39.23 39.23 46.44 4.17
260 261 1.092348 CAGACATGATGTGGCCACAG 58.908 55.000 39.29 28.66 45.48 3.66
261 262 0.034767 AGACATGATGTGGCCACAGG 60.035 55.000 39.29 29.26 45.48 4.00
262 263 0.035152 GACATGATGTGGCCACAGGA 60.035 55.000 39.29 28.95 45.48 3.86
263 264 0.627451 ACATGATGTGGCCACAGGAT 59.373 50.000 39.29 29.73 45.48 3.24
264 265 1.029681 CATGATGTGGCCACAGGATG 58.970 55.000 39.29 34.42 45.48 3.51
265 266 0.754217 ATGATGTGGCCACAGGATGC 60.754 55.000 39.29 25.59 45.48 3.91
266 267 2.438975 ATGTGGCCACAGGATGCG 60.439 61.111 39.29 0.00 45.48 4.73
267 268 3.272364 ATGTGGCCACAGGATGCGT 62.272 57.895 39.29 21.32 45.48 5.24
268 269 3.127533 GTGGCCACAGGATGCGTC 61.128 66.667 31.23 0.00 42.53 5.19
269 270 3.321648 TGGCCACAGGATGCGTCT 61.322 61.111 0.00 0.00 42.53 4.18
270 271 2.821366 GGCCACAGGATGCGTCTG 60.821 66.667 5.77 4.99 42.53 3.51
271 272 3.503363 GCCACAGGATGCGTCTGC 61.503 66.667 5.77 0.00 42.53 4.26
282 283 4.505217 CGTCTGCGCGTTGGATGC 62.505 66.667 8.43 0.00 0.00 3.91
283 284 3.422303 GTCTGCGCGTTGGATGCA 61.422 61.111 8.43 0.00 37.07 3.96
284 285 3.422303 TCTGCGCGTTGGATGCAC 61.422 61.111 8.43 0.00 34.42 4.57
285 286 4.799473 CTGCGCGTTGGATGCACG 62.799 66.667 8.43 5.17 40.75 5.34
290 291 4.101790 CGTTGGATGCACGGCCAC 62.102 66.667 2.24 0.00 33.01 5.01
291 292 3.747976 GTTGGATGCACGGCCACC 61.748 66.667 2.24 0.00 33.01 4.61
301 302 2.897207 CGGCCACCGTATTCCAGA 59.103 61.111 2.24 0.00 42.73 3.86
302 303 1.219664 CGGCCACCGTATTCCAGAA 59.780 57.895 2.24 0.00 42.73 3.02
303 304 0.391927 CGGCCACCGTATTCCAGAAA 60.392 55.000 2.24 0.00 42.73 2.52
304 305 1.828979 GGCCACCGTATTCCAGAAAA 58.171 50.000 0.00 0.00 0.00 2.29
305 306 1.743394 GGCCACCGTATTCCAGAAAAG 59.257 52.381 0.00 0.00 0.00 2.27
306 307 1.743394 GCCACCGTATTCCAGAAAAGG 59.257 52.381 0.00 0.00 0.00 3.11
307 308 1.743394 CCACCGTATTCCAGAAAAGGC 59.257 52.381 0.00 0.00 0.00 4.35
308 309 1.743394 CACCGTATTCCAGAAAAGGCC 59.257 52.381 0.00 0.00 0.00 5.19
309 310 1.340697 ACCGTATTCCAGAAAAGGCCC 60.341 52.381 0.00 0.00 0.00 5.80
310 311 1.340600 CCGTATTCCAGAAAAGGCCCA 60.341 52.381 0.00 0.00 0.00 5.36
311 312 2.017049 CGTATTCCAGAAAAGGCCCAG 58.983 52.381 0.00 0.00 0.00 4.45
312 313 2.355716 CGTATTCCAGAAAAGGCCCAGA 60.356 50.000 0.00 0.00 0.00 3.86
313 314 2.222227 ATTCCAGAAAAGGCCCAGAC 57.778 50.000 0.00 0.00 0.00 3.51
314 315 0.850100 TTCCAGAAAAGGCCCAGACA 59.150 50.000 0.00 0.00 0.00 3.41
315 316 0.110486 TCCAGAAAAGGCCCAGACAC 59.890 55.000 0.00 0.00 0.00 3.67
316 317 1.237285 CCAGAAAAGGCCCAGACACG 61.237 60.000 0.00 0.00 0.00 4.49
317 318 0.250295 CAGAAAAGGCCCAGACACGA 60.250 55.000 0.00 0.00 0.00 4.35
318 319 0.693049 AGAAAAGGCCCAGACACGAT 59.307 50.000 0.00 0.00 0.00 3.73
319 320 1.073923 AGAAAAGGCCCAGACACGATT 59.926 47.619 0.00 0.00 0.00 3.34
320 321 1.468914 GAAAAGGCCCAGACACGATTC 59.531 52.381 0.00 0.00 0.00 2.52
321 322 0.322546 AAAGGCCCAGACACGATTCC 60.323 55.000 0.00 0.00 0.00 3.01
322 323 1.488705 AAGGCCCAGACACGATTCCA 61.489 55.000 0.00 0.00 0.00 3.53
323 324 1.224592 GGCCCAGACACGATTCCAT 59.775 57.895 0.00 0.00 0.00 3.41
324 325 0.394352 GGCCCAGACACGATTCCATT 60.394 55.000 0.00 0.00 0.00 3.16
325 326 0.734889 GCCCAGACACGATTCCATTG 59.265 55.000 0.00 0.00 0.00 2.82
326 327 0.734889 CCCAGACACGATTCCATTGC 59.265 55.000 0.00 0.00 0.00 3.56
327 328 0.734889 CCAGACACGATTCCATTGCC 59.265 55.000 0.00 0.00 0.00 4.52
328 329 0.374758 CAGACACGATTCCATTGCCG 59.625 55.000 0.00 0.00 0.00 5.69
329 330 1.062525 GACACGATTCCATTGCCGC 59.937 57.895 0.00 0.00 0.00 6.53
330 331 2.322999 GACACGATTCCATTGCCGCC 62.323 60.000 0.00 0.00 0.00 6.13
331 332 2.828549 ACGATTCCATTGCCGCCC 60.829 61.111 0.00 0.00 0.00 6.13
332 333 3.595758 CGATTCCATTGCCGCCCC 61.596 66.667 0.00 0.00 0.00 5.80
333 334 2.441901 GATTCCATTGCCGCCCCA 60.442 61.111 0.00 0.00 0.00 4.96
334 335 2.038651 ATTCCATTGCCGCCCCAA 59.961 55.556 0.00 0.00 0.00 4.12
335 336 1.611851 ATTCCATTGCCGCCCCAAA 60.612 52.632 0.00 0.00 0.00 3.28
336 337 0.982326 ATTCCATTGCCGCCCCAAAT 60.982 50.000 0.00 0.00 0.00 2.32
337 338 0.324738 TTCCATTGCCGCCCCAAATA 60.325 50.000 0.00 0.00 0.00 1.40
338 339 0.754957 TCCATTGCCGCCCCAAATAG 60.755 55.000 0.00 0.00 0.00 1.73
339 340 0.754957 CCATTGCCGCCCCAAATAGA 60.755 55.000 0.00 0.00 0.00 1.98
340 341 0.385390 CATTGCCGCCCCAAATAGAC 59.615 55.000 0.00 0.00 0.00 2.59
341 342 0.033601 ATTGCCGCCCCAAATAGACA 60.034 50.000 0.00 0.00 0.00 3.41
342 343 0.679640 TTGCCGCCCCAAATAGACAG 60.680 55.000 0.00 0.00 0.00 3.51
343 344 1.223487 GCCGCCCCAAATAGACAGA 59.777 57.895 0.00 0.00 0.00 3.41
344 345 0.393808 GCCGCCCCAAATAGACAGAA 60.394 55.000 0.00 0.00 0.00 3.02
345 346 1.750682 GCCGCCCCAAATAGACAGAAT 60.751 52.381 0.00 0.00 0.00 2.40
346 347 2.222027 CCGCCCCAAATAGACAGAATC 58.778 52.381 0.00 0.00 0.00 2.52
347 348 2.222027 CGCCCCAAATAGACAGAATCC 58.778 52.381 0.00 0.00 0.00 3.01
348 349 2.222027 GCCCCAAATAGACAGAATCCG 58.778 52.381 0.00 0.00 0.00 4.18
349 350 2.851195 CCCCAAATAGACAGAATCCGG 58.149 52.381 0.00 0.00 0.00 5.14
350 351 2.438021 CCCCAAATAGACAGAATCCGGA 59.562 50.000 6.61 6.61 0.00 5.14
351 352 3.467803 CCCAAATAGACAGAATCCGGAC 58.532 50.000 6.12 0.00 0.00 4.79
352 353 3.118408 CCCAAATAGACAGAATCCGGACA 60.118 47.826 6.12 0.00 0.00 4.02
353 354 4.513442 CCAAATAGACAGAATCCGGACAA 58.487 43.478 6.12 0.00 0.00 3.18
354 355 4.941263 CCAAATAGACAGAATCCGGACAAA 59.059 41.667 6.12 0.00 0.00 2.83
355 356 5.414454 CCAAATAGACAGAATCCGGACAAAA 59.586 40.000 6.12 0.00 0.00 2.44
356 357 6.095440 CCAAATAGACAGAATCCGGACAAAAT 59.905 38.462 6.12 0.00 0.00 1.82
357 358 6.683974 AATAGACAGAATCCGGACAAAATG 57.316 37.500 6.12 4.22 0.00 2.32
358 359 3.347216 AGACAGAATCCGGACAAAATGG 58.653 45.455 6.12 0.00 0.00 3.16
359 360 3.009033 AGACAGAATCCGGACAAAATGGA 59.991 43.478 6.12 0.00 35.96 3.41
360 361 3.947834 GACAGAATCCGGACAAAATGGAT 59.052 43.478 6.12 0.00 44.26 3.41
361 362 3.696051 ACAGAATCCGGACAAAATGGATG 59.304 43.478 6.12 0.00 41.58 3.51
362 363 3.696051 CAGAATCCGGACAAAATGGATGT 59.304 43.478 6.12 0.00 41.58 3.06
363 364 3.947834 AGAATCCGGACAAAATGGATGTC 59.052 43.478 6.12 0.00 41.58 3.06
379 380 2.278336 TCCGTTTAGGATCGCGCG 60.278 61.111 26.76 26.76 45.98 6.86
380 381 3.984765 CCGTTTAGGATCGCGCGC 61.985 66.667 27.95 23.91 45.00 6.86
381 382 2.954868 CGTTTAGGATCGCGCGCT 60.955 61.111 30.48 17.80 0.00 5.92
382 383 2.621000 GTTTAGGATCGCGCGCTG 59.379 61.111 30.48 22.06 0.00 5.18
383 384 2.584970 TTTAGGATCGCGCGCTGG 60.585 61.111 30.48 15.15 0.00 4.85
384 385 3.071232 TTTAGGATCGCGCGCTGGA 62.071 57.895 30.48 20.50 0.00 3.86
385 386 2.954020 TTTAGGATCGCGCGCTGGAG 62.954 60.000 30.48 13.90 0.00 3.86
388 389 3.918220 GATCGCGCGCTGGAGTTG 61.918 66.667 30.48 11.83 0.00 3.16
417 418 1.002366 CAGCTGTAGCACAACCGATC 58.998 55.000 5.25 0.00 45.16 3.69
436 437 0.608035 CAAACCCACGGCCACAGTAT 60.608 55.000 2.24 0.00 0.00 2.12
438 439 1.198759 AACCCACGGCCACAGTATCT 61.199 55.000 2.24 0.00 0.00 1.98
469 470 6.128200 CCACGTCTACTAAACCAAATTAACCC 60.128 42.308 0.00 0.00 0.00 4.11
523 545 0.742505 TACGTCCGATGATGGTCCAC 59.257 55.000 0.00 0.00 0.00 4.02
524 546 1.227263 CGTCCGATGATGGTCCACC 60.227 63.158 0.00 0.00 0.00 4.61
525 547 1.146263 GTCCGATGATGGTCCACCC 59.854 63.158 0.00 0.00 34.29 4.61
526 548 2.070039 TCCGATGATGGTCCACCCC 61.070 63.158 0.00 0.00 34.29 4.95
527 549 2.108976 CGATGATGGTCCACCCCG 59.891 66.667 0.00 0.00 34.29 5.73
529 551 2.042095 ATGATGGTCCACCCCGGA 59.958 61.111 0.73 0.00 43.61 5.14
536 558 3.663419 TCCACCCCGGACAACTTT 58.337 55.556 0.73 0.00 39.64 2.66
537 559 1.924352 TCCACCCCGGACAACTTTT 59.076 52.632 0.73 0.00 39.64 2.27
538 560 0.179012 TCCACCCCGGACAACTTTTC 60.179 55.000 0.73 0.00 39.64 2.29
539 561 0.466555 CCACCCCGGACAACTTTTCA 60.467 55.000 0.73 0.00 36.56 2.69
540 562 0.666374 CACCCCGGACAACTTTTCAC 59.334 55.000 0.73 0.00 0.00 3.18
541 563 0.466739 ACCCCGGACAACTTTTCACC 60.467 55.000 0.73 0.00 0.00 4.02
542 564 0.466555 CCCCGGACAACTTTTCACCA 60.467 55.000 0.73 0.00 0.00 4.17
543 565 1.616159 CCCGGACAACTTTTCACCAT 58.384 50.000 0.73 0.00 0.00 3.55
555 577 1.615165 TTCACCATAACCCGCGGCTA 61.615 55.000 22.85 13.96 0.00 3.93
558 585 0.534203 ACCATAACCCGCGGCTAATG 60.534 55.000 22.85 20.52 0.00 1.90
659 2134 2.006888 TGAAACATAAGCAGCCTACGC 58.993 47.619 0.00 0.00 0.00 4.42
720 2202 2.767352 GCCACCAACCCCACCATA 59.233 61.111 0.00 0.00 0.00 2.74
772 2258 0.601841 CGGCTGTTTTGTCCTACGGT 60.602 55.000 0.00 0.00 0.00 4.83
816 2310 2.359850 CCATCCGTGTGGGTGTGG 60.360 66.667 0.00 0.00 45.65 4.17
906 2449 2.355193 GCCGAGCTCACCTTCTCCT 61.355 63.158 15.40 0.00 0.00 3.69
908 2451 0.108424 CCGAGCTCACCTTCTCCTTG 60.108 60.000 15.40 0.00 0.00 3.61
962 2516 3.440522 CGGGAAACTTTCTTGATCCTTCC 59.559 47.826 1.57 0.00 0.00 3.46
1064 2629 2.202797 CAGAGTGGCGGATGACGG 60.203 66.667 0.00 0.00 44.51 4.79
1075 2640 1.226888 GATGACGGCTACCACGACC 60.227 63.158 0.00 0.00 34.93 4.79
1081 2646 4.065281 GCTACCACGACCGCACCT 62.065 66.667 0.00 0.00 0.00 4.00
1082 2647 2.181021 CTACCACGACCGCACCTC 59.819 66.667 0.00 0.00 0.00 3.85
1083 2648 3.678717 CTACCACGACCGCACCTCG 62.679 68.421 0.00 0.00 37.17 4.63
1413 2978 1.002868 CAAGGAGTGGCTGGTGAGG 60.003 63.158 0.00 0.00 0.00 3.86
1471 3056 0.927537 TGCTCGCGTGATTAATTCGG 59.072 50.000 13.13 6.29 0.00 4.30
1478 3063 2.536928 GCGTGATTAATTCGGTGTCTGC 60.537 50.000 13.14 0.00 0.00 4.26
1489 3074 1.071605 GGTGTCTGCTCGATGAACAC 58.928 55.000 10.37 10.37 0.00 3.32
1499 3084 3.984633 GCTCGATGAACACCTAGCTTATC 59.015 47.826 0.00 0.00 0.00 1.75
1692 3306 6.925718 TGTCGATTGATCATTCTGAGGATTAC 59.074 38.462 14.04 4.14 0.00 1.89
1733 3347 5.127845 TCTCGAGACCAGCAAGATAAAGAAT 59.872 40.000 12.08 0.00 0.00 2.40
1734 3348 5.734720 TCGAGACCAGCAAGATAAAGAATT 58.265 37.500 0.00 0.00 0.00 2.17
1782 3399 0.812811 CGAGTGCCATCTGGTCCATG 60.813 60.000 0.00 0.00 37.57 3.66
1785 3402 0.465097 GTGCCATCTGGTCCATGAGG 60.465 60.000 0.00 0.00 37.57 3.86
1786 3403 0.621280 TGCCATCTGGTCCATGAGGA 60.621 55.000 7.59 0.00 37.33 3.71
1808 3428 0.392327 GAGCTCTTCTTGTCCCCTGC 60.392 60.000 6.43 0.00 0.00 4.85
1811 3431 0.689623 CTCTTCTTGTCCCCTGCAGT 59.310 55.000 13.81 0.00 0.00 4.40
1812 3432 1.072965 CTCTTCTTGTCCCCTGCAGTT 59.927 52.381 13.81 0.00 0.00 3.16
1813 3433 1.494721 TCTTCTTGTCCCCTGCAGTTT 59.505 47.619 13.81 0.00 0.00 2.66
1814 3434 1.882623 CTTCTTGTCCCCTGCAGTTTC 59.117 52.381 13.81 0.87 0.00 2.78
1815 3435 1.140312 TCTTGTCCCCTGCAGTTTCT 58.860 50.000 13.81 0.00 0.00 2.52
1816 3436 1.494721 TCTTGTCCCCTGCAGTTTCTT 59.505 47.619 13.81 0.00 0.00 2.52
1817 3437 2.091885 TCTTGTCCCCTGCAGTTTCTTT 60.092 45.455 13.81 0.00 0.00 2.52
1818 3438 2.452600 TGTCCCCTGCAGTTTCTTTT 57.547 45.000 13.81 0.00 0.00 2.27
1819 3439 2.306847 TGTCCCCTGCAGTTTCTTTTC 58.693 47.619 13.81 0.00 0.00 2.29
1820 3440 2.091885 TGTCCCCTGCAGTTTCTTTTCT 60.092 45.455 13.81 0.00 0.00 2.52
1821 3441 2.554462 GTCCCCTGCAGTTTCTTTTCTC 59.446 50.000 13.81 0.00 0.00 2.87
1822 3442 2.443255 TCCCCTGCAGTTTCTTTTCTCT 59.557 45.455 13.81 0.00 0.00 3.10
1823 3443 3.650942 TCCCCTGCAGTTTCTTTTCTCTA 59.349 43.478 13.81 0.00 0.00 2.43
1824 3444 4.104102 TCCCCTGCAGTTTCTTTTCTCTAA 59.896 41.667 13.81 0.00 0.00 2.10
1825 3445 4.457257 CCCCTGCAGTTTCTTTTCTCTAAG 59.543 45.833 13.81 0.00 0.00 2.18
1826 3446 5.066593 CCCTGCAGTTTCTTTTCTCTAAGT 58.933 41.667 13.81 0.00 0.00 2.24
1827 3447 5.532779 CCCTGCAGTTTCTTTTCTCTAAGTT 59.467 40.000 13.81 0.00 0.00 2.66
1828 3448 6.039829 CCCTGCAGTTTCTTTTCTCTAAGTTT 59.960 38.462 13.81 0.00 0.00 2.66
1829 3449 7.135467 CCTGCAGTTTCTTTTCTCTAAGTTTC 58.865 38.462 13.81 0.00 0.00 2.78
1830 3450 7.201732 CCTGCAGTTTCTTTTCTCTAAGTTTCA 60.202 37.037 13.81 0.00 0.00 2.69
1866 3486 3.768757 AGTCAAGAAGATAGCTGAGCTGT 59.231 43.478 18.79 11.11 40.10 4.40
1892 3516 1.934849 GCCATCCAAAAGAACAACGCC 60.935 52.381 0.00 0.00 0.00 5.68
1897 3522 1.480205 CAAAAGAACAACGCCTGCTG 58.520 50.000 0.00 0.00 0.00 4.41
1998 3651 7.639113 TTGAAAGTTACAACTCTTGGTCAAT 57.361 32.000 0.00 0.00 38.57 2.57
2005 3658 2.191128 ACTCTTGGTCAATGTGGAGC 57.809 50.000 0.00 0.00 35.89 4.70
2186 3839 1.226717 GCTCGACTCGGTAAGCCAG 60.227 63.158 0.00 0.00 34.09 4.85
2187 3840 1.226717 CTCGACTCGGTAAGCCAGC 60.227 63.158 0.00 0.00 34.09 4.85
2188 3841 2.202756 CGACTCGGTAAGCCAGCC 60.203 66.667 0.00 0.00 34.09 4.85
2189 3842 2.978824 GACTCGGTAAGCCAGCCA 59.021 61.111 0.00 0.00 34.09 4.75
2197 3850 0.107361 GTAAGCCAGCCACCCGTAAT 60.107 55.000 0.00 0.00 0.00 1.89
2231 3887 4.114794 TGCAAAGAAAAGAAGCAGCTTTC 58.885 39.130 9.62 2.56 37.12 2.62
2297 3959 1.886542 GGGGTCGAAAAAGCTTCACAT 59.113 47.619 0.00 0.00 0.00 3.21
2316 3978 8.948631 TTCACATCTCTTATACACTGGAATTC 57.051 34.615 0.00 0.00 0.00 2.17
2333 3995 6.542821 TGGAATTCCTACAAAACTGACTGAT 58.457 36.000 24.73 0.00 36.82 2.90
2334 3996 6.430925 TGGAATTCCTACAAAACTGACTGATG 59.569 38.462 24.73 0.00 36.82 3.07
2339 4001 4.153117 CCTACAAAACTGACTGATGAGCAC 59.847 45.833 0.00 0.00 0.00 4.40
2486 4183 8.394121 CAAACTTGAGAAAGCTTATATGTCCTC 58.606 37.037 0.00 0.00 0.00 3.71
2513 4211 4.005650 CACCACATAAGTCAAGCTCACAT 58.994 43.478 0.00 0.00 0.00 3.21
2524 4222 3.149196 CAAGCTCACATTAACACCCACT 58.851 45.455 0.00 0.00 0.00 4.00
2601 4300 8.567285 ACCTAGTTGGAGAAAAATATTCACTG 57.433 34.615 0.00 0.00 39.71 3.66
2639 4338 2.026262 TCACTTGGTGCTATTTCCCCTC 60.026 50.000 0.00 0.00 32.98 4.30
2789 4488 3.620374 CAGCGCCAGAATATATCATGACC 59.380 47.826 2.29 0.00 0.00 4.02
2910 4611 1.151450 CAGAACCTGGTGGCTTGGT 59.849 57.895 0.00 0.00 36.63 3.67
3060 4761 0.466124 GTCTAGACCCACCATGAGGC 59.534 60.000 12.13 0.00 39.06 4.70
3062 4763 0.911769 CTAGACCCACCATGAGGCAA 59.088 55.000 0.00 0.00 39.06 4.52
3068 4769 0.327924 CCACCATGAGGCAAGTGGTA 59.672 55.000 8.05 0.00 44.09 3.25
3071 4772 2.890311 CACCATGAGGCAAGTGGTAAAA 59.110 45.455 7.27 0.00 44.09 1.52
3110 4811 2.095461 GGCATGGAAGACTTCTTTCCC 58.905 52.381 14.72 7.30 36.11 3.97
3233 4934 1.204941 GACAGGCACCGACAGAAGTAT 59.795 52.381 0.00 0.00 0.00 2.12
3266 8098 0.034574 TCCATGCCGGTATTGTGCTT 60.035 50.000 0.66 0.00 35.57 3.91
3357 8253 1.274416 ACCAGGAGAAAGGGGCATAGA 60.274 52.381 0.00 0.00 0.00 1.98
3377 8274 3.770388 AGAACTAAGGTAGGGAAGTGAGC 59.230 47.826 0.00 0.00 0.00 4.26
3488 8390 5.744666 TTACAGTTTTTGGAAAGGTCTCG 57.255 39.130 0.00 0.00 0.00 4.04
3561 8465 6.455360 AATATAGGATGCAAAACAGTGTGG 57.545 37.500 0.00 0.00 0.00 4.17
3608 8516 3.058016 AGGATTGTTCAAGATGTTGTGCG 60.058 43.478 2.11 0.00 34.98 5.34
3637 8545 1.202582 AGTGAGACGAGTACCATGCAC 59.797 52.381 0.00 0.00 0.00 4.57
3639 8547 1.140407 GAGACGAGTACCATGCACGC 61.140 60.000 0.00 0.00 0.00 5.34
3649 8557 2.983030 ATGCACGCCTCGGCAAAA 60.983 55.556 8.87 0.00 44.20 2.44
3650 8558 3.267597 ATGCACGCCTCGGCAAAAC 62.268 57.895 8.87 0.00 44.20 2.43
3652 8560 3.030652 CACGCCTCGGCAAAACTT 58.969 55.556 8.87 0.00 42.06 2.66
3653 8561 1.082104 CACGCCTCGGCAAAACTTC 60.082 57.895 8.87 0.00 42.06 3.01
3654 8562 1.525077 ACGCCTCGGCAAAACTTCA 60.525 52.632 8.87 0.00 42.06 3.02
3655 8563 1.082104 CGCCTCGGCAAAACTTCAC 60.082 57.895 8.87 0.00 42.06 3.18
3656 8564 1.781025 CGCCTCGGCAAAACTTCACA 61.781 55.000 8.87 0.00 42.06 3.58
3657 8565 0.317854 GCCTCGGCAAAACTTCACAC 60.318 55.000 2.41 0.00 41.49 3.82
3658 8566 1.021202 CCTCGGCAAAACTTCACACA 58.979 50.000 0.00 0.00 0.00 3.72
3659 8567 1.002468 CCTCGGCAAAACTTCACACAG 60.002 52.381 0.00 0.00 0.00 3.66
3670 8578 7.116233 GCAAAACTTCACACAGAGAAAAAGAAA 59.884 33.333 0.00 0.00 0.00 2.52
3671 8579 8.642020 CAAAACTTCACACAGAGAAAAAGAAAG 58.358 33.333 0.00 0.00 0.00 2.62
3686 8594 8.233190 AGAAAAAGAAAGCAGATTCTCGTATTG 58.767 33.333 0.68 0.00 38.69 1.90
3699 8607 4.010349 TCTCGTATTGTGCTGAGAGAGAA 58.990 43.478 0.00 0.00 32.80 2.87
3700 8608 4.459337 TCTCGTATTGTGCTGAGAGAGAAA 59.541 41.667 0.00 0.00 32.80 2.52
3701 8609 4.738124 TCGTATTGTGCTGAGAGAGAAAG 58.262 43.478 0.00 0.00 0.00 2.62
3751 8659 5.333645 GCTTTGTGATTGTGTGAGTACTGAG 60.334 44.000 0.00 0.00 0.00 3.35
3758 8666 1.878088 GTGTGAGTACTGAGACGACCA 59.122 52.381 0.00 0.00 0.00 4.02
3761 8669 2.007608 TGAGTACTGAGACGACCATCG 58.992 52.381 0.00 0.00 46.93 3.84
3772 8680 1.745489 GACCATCGGTGAGGTTGGC 60.745 63.158 0.00 0.00 38.50 4.52
3783 8691 4.079253 GGTGAGGTTGGCAAGAAGATAAA 58.921 43.478 0.00 0.00 0.00 1.40
3786 8694 4.706476 TGAGGTTGGCAAGAAGATAAATGG 59.294 41.667 0.00 0.00 0.00 3.16
3864 8772 8.859090 CATGAGCCATAATTATTGGGTTAAGAA 58.141 33.333 15.30 5.35 44.68 2.52
3865 8773 9.605951 ATGAGCCATAATTATTGGGTTAAGAAT 57.394 29.630 15.30 6.68 44.68 2.40
3867 8775 8.193953 AGCCATAATTATTGGGTTAAGAATGG 57.806 34.615 10.84 0.00 42.12 3.16
3875 8784 1.947456 GGGTTAAGAATGGTGATCGCC 59.053 52.381 18.84 18.84 0.00 5.54
3882 8791 3.535561 AGAATGGTGATCGCCAAGTAAG 58.464 45.455 30.71 0.00 42.48 2.34
3904 8813 3.134458 GCACTAGTATGCCCAAGATGAC 58.866 50.000 0.00 0.00 39.86 3.06
3924 8833 2.311450 GGTCGCCGAAAGAAAGAAAC 57.689 50.000 0.00 0.00 0.00 2.78
3937 8846 2.572191 AAGAAACCATGCATGCATCG 57.428 45.000 30.07 25.71 33.90 3.84
3966 8875 1.202533 CCCAGATAACCGTCGCTCATT 60.203 52.381 0.00 0.00 0.00 2.57
3968 8877 2.540515 CAGATAACCGTCGCTCATTGT 58.459 47.619 0.00 0.00 0.00 2.71
3969 8878 2.282555 CAGATAACCGTCGCTCATTGTG 59.717 50.000 0.00 0.00 0.00 3.33
3975 8884 2.686405 ACCGTCGCTCATTGTGTAGATA 59.314 45.455 0.00 0.00 0.00 1.98
4071 8982 3.261981 ACATCCAGATTCGTAACCCAC 57.738 47.619 0.00 0.00 0.00 4.61
4072 8983 2.569853 ACATCCAGATTCGTAACCCACA 59.430 45.455 0.00 0.00 0.00 4.17
4079 8990 3.321111 AGATTCGTAACCCACATAGCGAT 59.679 43.478 0.00 0.00 0.00 4.58
4081 8992 2.025898 TCGTAACCCACATAGCGATGA 58.974 47.619 14.19 0.00 36.48 2.92
4101 9012 1.613925 ACTACAAGCACTGAAGCGAGA 59.386 47.619 0.00 0.00 40.15 4.04
4107 9018 1.347817 GCACTGAAGCGAGACGAAGG 61.348 60.000 0.00 0.00 0.00 3.46
4128 9040 2.033602 GCCACTGTAACGCCCCTT 59.966 61.111 0.00 0.00 0.00 3.95
4187 9099 0.797249 CGGGAAGTCGTCGTGCTAAG 60.797 60.000 0.00 0.00 0.00 2.18
4190 9102 1.199558 GGAAGTCGTCGTGCTAAGTCT 59.800 52.381 0.00 0.00 0.00 3.24
4195 9107 3.310227 AGTCGTCGTGCTAAGTCTCATAG 59.690 47.826 0.00 0.00 0.00 2.23
4197 9109 4.024725 GTCGTCGTGCTAAGTCTCATAGAT 60.025 45.833 0.00 0.00 0.00 1.98
4198 9110 4.211584 TCGTCGTGCTAAGTCTCATAGATC 59.788 45.833 0.00 0.00 0.00 2.75
4202 9114 4.979197 CGTGCTAAGTCTCATAGATCCAAC 59.021 45.833 0.00 0.00 0.00 3.77
4207 9119 2.101582 AGTCTCATAGATCCAACGCACC 59.898 50.000 0.00 0.00 0.00 5.01
4209 9121 2.499693 TCTCATAGATCCAACGCACCAA 59.500 45.455 0.00 0.00 0.00 3.67
4214 9126 2.028130 AGATCCAACGCACCAAAACAA 58.972 42.857 0.00 0.00 0.00 2.83
4225 9137 2.105328 AAAACAACAACCGCCGCC 59.895 55.556 0.00 0.00 0.00 6.13
4244 9156 4.201783 CCGCCGAGGAAAAGTGTAAATAAG 60.202 45.833 0.00 0.00 45.00 1.73
4256 9168 7.939784 AAGTGTAAATAAGAAGGATCCAACC 57.060 36.000 15.82 2.02 0.00 3.77
4275 9187 2.676342 ACCTGAAGACACACGAACAAAC 59.324 45.455 0.00 0.00 0.00 2.93
4277 9189 3.312421 CCTGAAGACACACGAACAAACAT 59.688 43.478 0.00 0.00 0.00 2.71
4288 9200 3.246699 ACGAACAAACATGAACGACGAAT 59.753 39.130 0.00 0.00 0.00 3.34
4293 9205 6.332504 ACAAACATGAACGACGAATAGATC 57.667 37.500 0.00 0.00 0.00 2.75
4308 9220 0.179073 AGATCCGAGCAAATCCACCG 60.179 55.000 0.00 0.00 0.00 4.94
4313 9225 1.438651 CGAGCAAATCCACCGAAGAA 58.561 50.000 0.00 0.00 0.00 2.52
4324 9236 1.067142 CACCGAAGAAAGATCCACCGA 60.067 52.381 0.00 0.00 0.00 4.69
4332 9244 2.457366 AAGATCCACCGAAGACACAC 57.543 50.000 0.00 0.00 0.00 3.82
4334 9246 0.391263 GATCCACCGAAGACACACCC 60.391 60.000 0.00 0.00 0.00 4.61
4339 9251 2.813726 CCGAAGACACACCCCCACA 61.814 63.158 0.00 0.00 0.00 4.17
4340 9252 1.374947 CGAAGACACACCCCCACAT 59.625 57.895 0.00 0.00 0.00 3.21
4346 9258 4.299796 ACACCCCCACATGCCCAC 62.300 66.667 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.076533 CTGGATCGCAGCGTAACGTT 61.077 55.000 15.93 5.88 0.00 3.99
3 4 3.006706 GCTGGATCGCAGCGTAAC 58.993 61.111 15.93 6.56 35.87 2.50
24 25 0.237498 CTCCAAAAAGAACGGTCGCC 59.763 55.000 0.00 0.00 0.00 5.54
25 26 0.237498 CCTCCAAAAAGAACGGTCGC 59.763 55.000 0.00 0.00 0.00 5.19
26 27 0.237498 GCCTCCAAAAAGAACGGTCG 59.763 55.000 0.00 0.00 0.00 4.79
27 28 1.266989 CAGCCTCCAAAAAGAACGGTC 59.733 52.381 0.00 0.00 0.00 4.79
28 29 1.318576 CAGCCTCCAAAAAGAACGGT 58.681 50.000 0.00 0.00 0.00 4.83
29 30 0.598065 CCAGCCTCCAAAAAGAACGG 59.402 55.000 0.00 0.00 0.00 4.44
30 31 0.039165 GCCAGCCTCCAAAAAGAACG 60.039 55.000 0.00 0.00 0.00 3.95
31 32 1.039856 TGCCAGCCTCCAAAAAGAAC 58.960 50.000 0.00 0.00 0.00 3.01
32 33 1.619827 CATGCCAGCCTCCAAAAAGAA 59.380 47.619 0.00 0.00 0.00 2.52
33 34 1.259609 CATGCCAGCCTCCAAAAAGA 58.740 50.000 0.00 0.00 0.00 2.52
34 35 0.248289 CCATGCCAGCCTCCAAAAAG 59.752 55.000 0.00 0.00 0.00 2.27
35 36 1.193462 CCCATGCCAGCCTCCAAAAA 61.193 55.000 0.00 0.00 0.00 1.94
36 37 1.610086 CCCATGCCAGCCTCCAAAA 60.610 57.895 0.00 0.00 0.00 2.44
37 38 2.037687 CCCATGCCAGCCTCCAAA 59.962 61.111 0.00 0.00 0.00 3.28
38 39 3.267233 ACCCATGCCAGCCTCCAA 61.267 61.111 0.00 0.00 0.00 3.53
39 40 4.051167 CACCCATGCCAGCCTCCA 62.051 66.667 0.00 0.00 0.00 3.86
69 70 4.659874 GTTTGTCGCCGGCACACG 62.660 66.667 28.98 10.38 43.80 4.49
70 71 4.322385 GGTTTGTCGCCGGCACAC 62.322 66.667 28.98 22.29 0.00 3.82
71 72 2.457743 ATAGGTTTGTCGCCGGCACA 62.458 55.000 28.98 25.14 0.00 4.57
72 73 1.303091 AATAGGTTTGTCGCCGGCAC 61.303 55.000 28.98 22.84 0.00 5.01
73 74 1.003112 AATAGGTTTGTCGCCGGCA 60.003 52.632 28.98 11.20 0.00 5.69
74 75 1.022451 TGAATAGGTTTGTCGCCGGC 61.022 55.000 19.07 19.07 0.00 6.13
75 76 1.663695 ATGAATAGGTTTGTCGCCGG 58.336 50.000 0.00 0.00 0.00 6.13
76 77 3.757745 AAATGAATAGGTTTGTCGCCG 57.242 42.857 0.00 0.00 0.00 6.46
77 78 4.082463 TCCAAAATGAATAGGTTTGTCGCC 60.082 41.667 0.00 0.00 31.66 5.54
78 79 5.054390 TCCAAAATGAATAGGTTTGTCGC 57.946 39.130 0.00 0.00 31.66 5.19
79 80 5.640732 CCTCCAAAATGAATAGGTTTGTCG 58.359 41.667 0.00 0.00 31.66 4.35
80 81 5.185828 AGCCTCCAAAATGAATAGGTTTGTC 59.814 40.000 0.00 0.00 31.66 3.18
81 82 5.047092 CAGCCTCCAAAATGAATAGGTTTGT 60.047 40.000 0.00 0.00 31.66 2.83
82 83 5.185635 TCAGCCTCCAAAATGAATAGGTTTG 59.814 40.000 0.00 0.00 33.06 2.93
83 84 5.185828 GTCAGCCTCCAAAATGAATAGGTTT 59.814 40.000 0.00 0.00 0.00 3.27
84 85 4.706962 GTCAGCCTCCAAAATGAATAGGTT 59.293 41.667 0.00 0.00 0.00 3.50
85 86 4.018050 AGTCAGCCTCCAAAATGAATAGGT 60.018 41.667 0.00 0.00 0.00 3.08
86 87 4.337555 CAGTCAGCCTCCAAAATGAATAGG 59.662 45.833 0.00 0.00 0.00 2.57
87 88 4.946157 ACAGTCAGCCTCCAAAATGAATAG 59.054 41.667 0.00 0.00 0.00 1.73
88 89 4.701651 CACAGTCAGCCTCCAAAATGAATA 59.298 41.667 0.00 0.00 0.00 1.75
89 90 3.508793 CACAGTCAGCCTCCAAAATGAAT 59.491 43.478 0.00 0.00 0.00 2.57
90 91 2.886523 CACAGTCAGCCTCCAAAATGAA 59.113 45.455 0.00 0.00 0.00 2.57
91 92 2.158623 ACACAGTCAGCCTCCAAAATGA 60.159 45.455 0.00 0.00 0.00 2.57
92 93 2.233271 ACACAGTCAGCCTCCAAAATG 58.767 47.619 0.00 0.00 0.00 2.32
93 94 2.624838 CAACACAGTCAGCCTCCAAAAT 59.375 45.455 0.00 0.00 0.00 1.82
94 95 2.023673 CAACACAGTCAGCCTCCAAAA 58.976 47.619 0.00 0.00 0.00 2.44
95 96 1.679139 CAACACAGTCAGCCTCCAAA 58.321 50.000 0.00 0.00 0.00 3.28
96 97 0.819259 GCAACACAGTCAGCCTCCAA 60.819 55.000 0.00 0.00 0.00 3.53
97 98 1.227943 GCAACACAGTCAGCCTCCA 60.228 57.895 0.00 0.00 0.00 3.86
98 99 1.968540 GGCAACACAGTCAGCCTCC 60.969 63.158 0.00 0.00 43.70 4.30
99 100 2.320587 CGGCAACACAGTCAGCCTC 61.321 63.158 10.49 0.00 44.85 4.70
100 101 2.281070 CGGCAACACAGTCAGCCT 60.281 61.111 10.49 0.00 44.85 4.58
101 102 3.357079 CCGGCAACACAGTCAGCC 61.357 66.667 0.00 0.00 43.61 4.85
102 103 4.030452 GCCGGCAACACAGTCAGC 62.030 66.667 24.80 0.00 0.00 4.26
103 104 3.357079 GGCCGGCAACACAGTCAG 61.357 66.667 30.85 0.00 0.00 3.51
126 127 1.739929 TATGTCGCCAGCAACACGG 60.740 57.895 0.00 0.00 0.00 4.94
127 128 1.419922 GTATGTCGCCAGCAACACG 59.580 57.895 0.00 0.00 0.00 4.49
128 129 0.673644 AGGTATGTCGCCAGCAACAC 60.674 55.000 0.00 0.00 0.00 3.32
129 130 0.899019 TAGGTATGTCGCCAGCAACA 59.101 50.000 0.00 0.00 0.00 3.33
130 131 2.240493 ATAGGTATGTCGCCAGCAAC 57.760 50.000 0.00 0.00 0.00 4.17
131 132 2.169561 TGAATAGGTATGTCGCCAGCAA 59.830 45.455 0.00 0.00 0.00 3.91
132 133 1.760029 TGAATAGGTATGTCGCCAGCA 59.240 47.619 0.00 0.00 0.00 4.41
133 134 2.526304 TGAATAGGTATGTCGCCAGC 57.474 50.000 0.00 0.00 0.00 4.85
134 135 5.277974 CCAAAATGAATAGGTATGTCGCCAG 60.278 44.000 0.00 0.00 0.00 4.85
135 136 4.578516 CCAAAATGAATAGGTATGTCGCCA 59.421 41.667 0.00 0.00 0.00 5.69
136 137 4.819630 TCCAAAATGAATAGGTATGTCGCC 59.180 41.667 0.00 0.00 0.00 5.54
137 138 5.049405 CCTCCAAAATGAATAGGTATGTCGC 60.049 44.000 0.00 0.00 0.00 5.19
138 139 5.049405 GCCTCCAAAATGAATAGGTATGTCG 60.049 44.000 0.00 0.00 0.00 4.35
139 140 6.016777 CAGCCTCCAAAATGAATAGGTATGTC 60.017 42.308 0.00 0.00 0.00 3.06
140 141 5.829924 CAGCCTCCAAAATGAATAGGTATGT 59.170 40.000 0.00 0.00 0.00 2.29
141 142 5.242393 CCAGCCTCCAAAATGAATAGGTATG 59.758 44.000 0.00 0.00 0.00 2.39
142 143 5.388654 CCAGCCTCCAAAATGAATAGGTAT 58.611 41.667 0.00 0.00 0.00 2.73
143 144 4.792068 CCAGCCTCCAAAATGAATAGGTA 58.208 43.478 0.00 0.00 0.00 3.08
144 145 3.635591 CCAGCCTCCAAAATGAATAGGT 58.364 45.455 0.00 0.00 0.00 3.08
145 146 2.363359 GCCAGCCTCCAAAATGAATAGG 59.637 50.000 0.00 0.00 0.00 2.57
146 147 3.067742 CAGCCAGCCTCCAAAATGAATAG 59.932 47.826 0.00 0.00 0.00 1.73
147 148 3.025978 CAGCCAGCCTCCAAAATGAATA 58.974 45.455 0.00 0.00 0.00 1.75
148 149 1.829222 CAGCCAGCCTCCAAAATGAAT 59.171 47.619 0.00 0.00 0.00 2.57
149 150 1.259609 CAGCCAGCCTCCAAAATGAA 58.740 50.000 0.00 0.00 0.00 2.57
150 151 0.112995 ACAGCCAGCCTCCAAAATGA 59.887 50.000 0.00 0.00 0.00 2.57
151 152 0.245539 CACAGCCAGCCTCCAAAATG 59.754 55.000 0.00 0.00 0.00 2.32
152 153 0.178953 ACACAGCCAGCCTCCAAAAT 60.179 50.000 0.00 0.00 0.00 1.82
153 154 0.396974 AACACAGCCAGCCTCCAAAA 60.397 50.000 0.00 0.00 0.00 2.44
154 155 1.108727 CAACACAGCCAGCCTCCAAA 61.109 55.000 0.00 0.00 0.00 3.28
155 156 1.529010 CAACACAGCCAGCCTCCAA 60.529 57.895 0.00 0.00 0.00 3.53
156 157 2.113774 CAACACAGCCAGCCTCCA 59.886 61.111 0.00 0.00 0.00 3.86
157 158 3.368571 GCAACACAGCCAGCCTCC 61.369 66.667 0.00 0.00 0.00 4.30
165 166 1.841663 ATTCACGACGGCAACACAGC 61.842 55.000 0.00 0.00 0.00 4.40
166 167 0.586319 AATTCACGACGGCAACACAG 59.414 50.000 0.00 0.00 0.00 3.66
167 168 1.795872 CTAATTCACGACGGCAACACA 59.204 47.619 0.00 0.00 0.00 3.72
168 169 1.127951 CCTAATTCACGACGGCAACAC 59.872 52.381 0.00 0.00 0.00 3.32
169 170 1.434555 CCTAATTCACGACGGCAACA 58.565 50.000 0.00 0.00 0.00 3.33
170 171 0.725117 CCCTAATTCACGACGGCAAC 59.275 55.000 0.00 0.00 0.00 4.17
171 172 1.022451 GCCCTAATTCACGACGGCAA 61.022 55.000 0.00 0.00 36.38 4.52
172 173 1.448893 GCCCTAATTCACGACGGCA 60.449 57.895 0.00 0.00 36.38 5.69
173 174 2.178235 GGCCCTAATTCACGACGGC 61.178 63.158 0.00 0.00 35.60 5.68
174 175 1.881252 CGGCCCTAATTCACGACGG 60.881 63.158 0.00 0.00 0.00 4.79
175 176 2.522638 GCGGCCCTAATTCACGACG 61.523 63.158 0.00 0.00 0.00 5.12
176 177 1.153429 AGCGGCCCTAATTCACGAC 60.153 57.895 0.00 0.00 0.00 4.34
177 178 1.153449 CAGCGGCCCTAATTCACGA 60.153 57.895 0.00 0.00 0.00 4.35
178 179 1.153449 TCAGCGGCCCTAATTCACG 60.153 57.895 0.00 0.00 0.00 4.35
179 180 0.392461 TGTCAGCGGCCCTAATTCAC 60.392 55.000 0.00 0.00 0.00 3.18
180 181 0.546122 ATGTCAGCGGCCCTAATTCA 59.454 50.000 0.00 0.00 0.00 2.57
181 182 0.947244 CATGTCAGCGGCCCTAATTC 59.053 55.000 0.00 0.00 0.00 2.17
182 183 0.546122 TCATGTCAGCGGCCCTAATT 59.454 50.000 0.00 0.00 0.00 1.40
183 184 0.546122 TTCATGTCAGCGGCCCTAAT 59.454 50.000 0.00 0.00 0.00 1.73
184 185 0.392461 GTTCATGTCAGCGGCCCTAA 60.392 55.000 0.00 0.00 0.00 2.69
185 186 1.220749 GTTCATGTCAGCGGCCCTA 59.779 57.895 0.00 0.00 0.00 3.53
186 187 1.264749 TAGTTCATGTCAGCGGCCCT 61.265 55.000 0.00 0.00 0.00 5.19
187 188 1.090052 GTAGTTCATGTCAGCGGCCC 61.090 60.000 0.00 0.00 0.00 5.80
188 189 1.421410 CGTAGTTCATGTCAGCGGCC 61.421 60.000 0.00 0.00 0.00 6.13
189 190 1.421410 CCGTAGTTCATGTCAGCGGC 61.421 60.000 0.00 0.00 0.00 6.53
190 191 0.806102 CCCGTAGTTCATGTCAGCGG 60.806 60.000 10.00 10.00 37.72 5.52
191 192 1.421410 GCCCGTAGTTCATGTCAGCG 61.421 60.000 0.00 0.00 0.00 5.18
192 193 0.108138 AGCCCGTAGTTCATGTCAGC 60.108 55.000 0.00 0.00 0.00 4.26
193 194 1.066858 ACAGCCCGTAGTTCATGTCAG 60.067 52.381 0.00 0.00 0.00 3.51
194 195 0.973632 ACAGCCCGTAGTTCATGTCA 59.026 50.000 0.00 0.00 0.00 3.58
195 196 1.732259 CAACAGCCCGTAGTTCATGTC 59.268 52.381 0.00 0.00 0.00 3.06
196 197 1.071699 ACAACAGCCCGTAGTTCATGT 59.928 47.619 0.00 0.00 0.00 3.21
197 198 1.808411 ACAACAGCCCGTAGTTCATG 58.192 50.000 0.00 0.00 0.00 3.07
198 199 2.561478 AACAACAGCCCGTAGTTCAT 57.439 45.000 0.00 0.00 0.00 2.57
199 200 3.688694 ATAACAACAGCCCGTAGTTCA 57.311 42.857 0.00 0.00 0.00 3.18
200 201 3.061697 CGAATAACAACAGCCCGTAGTTC 59.938 47.826 0.00 0.00 0.00 3.01
201 202 2.997986 CGAATAACAACAGCCCGTAGTT 59.002 45.455 0.00 0.00 0.00 2.24
202 203 2.231964 TCGAATAACAACAGCCCGTAGT 59.768 45.455 0.00 0.00 0.00 2.73
203 204 2.883574 TCGAATAACAACAGCCCGTAG 58.116 47.619 0.00 0.00 0.00 3.51
204 205 3.316071 TTCGAATAACAACAGCCCGTA 57.684 42.857 0.00 0.00 0.00 4.02
205 206 2.172851 TTCGAATAACAACAGCCCGT 57.827 45.000 0.00 0.00 0.00 5.28
206 207 5.418310 AATATTCGAATAACAACAGCCCG 57.582 39.130 21.05 0.00 0.00 6.13
207 208 5.458779 GCAAATATTCGAATAACAACAGCCC 59.541 40.000 21.05 1.23 0.00 5.19
208 209 5.171337 CGCAAATATTCGAATAACAACAGCC 59.829 40.000 21.05 4.92 0.00 4.85
209 210 5.737290 ACGCAAATATTCGAATAACAACAGC 59.263 36.000 21.05 16.47 0.00 4.40
210 211 7.719689 AACGCAAATATTCGAATAACAACAG 57.280 32.000 21.05 13.17 0.00 3.16
211 212 9.608617 TTAAACGCAAATATTCGAATAACAACA 57.391 25.926 21.05 0.00 0.00 3.33
214 215 9.279904 CCTTTAAACGCAAATATTCGAATAACA 57.720 29.630 21.05 1.51 0.00 2.41
215 216 8.257166 GCCTTTAAACGCAAATATTCGAATAAC 58.743 33.333 21.05 10.45 0.00 1.89
216 217 7.968956 TGCCTTTAAACGCAAATATTCGAATAA 59.031 29.630 21.05 5.94 30.46 1.40
217 218 7.473366 TGCCTTTAAACGCAAATATTCGAATA 58.527 30.769 19.63 19.63 30.46 1.75
218 219 6.326375 TGCCTTTAAACGCAAATATTCGAAT 58.674 32.000 16.15 16.15 30.46 3.34
219 220 5.700846 TGCCTTTAAACGCAAATATTCGAA 58.299 33.333 9.10 0.00 30.46 3.71
220 221 5.122554 TCTGCCTTTAAACGCAAATATTCGA 59.877 36.000 12.06 3.15 33.87 3.71
221 222 5.227184 GTCTGCCTTTAAACGCAAATATTCG 59.773 40.000 12.06 0.00 33.87 3.34
222 223 6.090129 TGTCTGCCTTTAAACGCAAATATTC 58.910 36.000 12.06 2.51 33.87 1.75
223 224 6.019779 TGTCTGCCTTTAAACGCAAATATT 57.980 33.333 12.06 0.00 33.87 1.28
224 225 5.637006 TGTCTGCCTTTAAACGCAAATAT 57.363 34.783 12.06 0.00 33.87 1.28
225 226 5.182190 TCATGTCTGCCTTTAAACGCAAATA 59.818 36.000 12.06 0.00 33.87 1.40
226 227 4.022416 TCATGTCTGCCTTTAAACGCAAAT 60.022 37.500 12.06 5.13 33.87 2.32
227 228 3.316588 TCATGTCTGCCTTTAAACGCAAA 59.683 39.130 12.06 0.00 33.87 3.68
228 229 2.881513 TCATGTCTGCCTTTAAACGCAA 59.118 40.909 12.06 0.16 33.87 4.85
229 230 2.499197 TCATGTCTGCCTTTAAACGCA 58.501 42.857 10.77 10.77 0.00 5.24
230 231 3.119849 ACATCATGTCTGCCTTTAAACGC 60.120 43.478 2.60 2.60 0.00 4.84
231 232 4.406069 CACATCATGTCTGCCTTTAAACG 58.594 43.478 0.00 0.00 0.00 3.60
232 233 4.737054 CCACATCATGTCTGCCTTTAAAC 58.263 43.478 0.00 0.00 0.00 2.01
233 234 3.193267 GCCACATCATGTCTGCCTTTAAA 59.807 43.478 0.00 0.00 0.00 1.52
234 235 2.754552 GCCACATCATGTCTGCCTTTAA 59.245 45.455 0.00 0.00 0.00 1.52
235 236 2.368439 GCCACATCATGTCTGCCTTTA 58.632 47.619 0.00 0.00 0.00 1.85
236 237 1.180029 GCCACATCATGTCTGCCTTT 58.820 50.000 0.00 0.00 0.00 3.11
237 238 0.682209 GGCCACATCATGTCTGCCTT 60.682 55.000 17.32 0.00 40.37 4.35
238 239 1.077212 GGCCACATCATGTCTGCCT 60.077 57.895 17.32 0.00 40.37 4.75
239 240 1.378911 TGGCCACATCATGTCTGCC 60.379 57.895 17.63 17.63 42.55 4.85
240 241 0.961857 TGTGGCCACATCATGTCTGC 60.962 55.000 34.74 4.36 36.21 4.26
241 242 1.092348 CTGTGGCCACATCATGTCTG 58.908 55.000 37.66 20.08 41.01 3.51
242 243 0.034767 CCTGTGGCCACATCATGTCT 60.035 55.000 37.66 0.00 41.01 3.41
243 244 0.035152 TCCTGTGGCCACATCATGTC 60.035 55.000 37.66 9.06 41.01 3.06
244 245 0.627451 ATCCTGTGGCCACATCATGT 59.373 50.000 37.66 19.27 41.01 3.21
245 246 1.029681 CATCCTGTGGCCACATCATG 58.970 55.000 37.66 32.62 41.01 3.07
246 247 0.754217 GCATCCTGTGGCCACATCAT 60.754 55.000 37.66 27.47 41.01 2.45
247 248 1.378911 GCATCCTGTGGCCACATCA 60.379 57.895 37.66 26.53 41.01 3.07
248 249 2.475466 CGCATCCTGTGGCCACATC 61.475 63.158 37.66 21.67 41.01 3.06
249 250 2.438975 CGCATCCTGTGGCCACAT 60.439 61.111 37.66 21.78 41.01 3.21
250 251 3.899981 GACGCATCCTGTGGCCACA 62.900 63.158 35.49 35.49 39.32 4.17
251 252 3.127533 GACGCATCCTGTGGCCAC 61.128 66.667 29.67 29.67 27.14 5.01
252 253 3.321648 AGACGCATCCTGTGGCCA 61.322 61.111 0.00 0.00 36.29 5.36
253 254 2.821366 CAGACGCATCCTGTGGCC 60.821 66.667 0.00 0.00 36.29 5.36
254 255 3.503363 GCAGACGCATCCTGTGGC 61.503 66.667 0.00 0.00 35.76 5.01
255 256 3.190849 CGCAGACGCATCCTGTGG 61.191 66.667 0.00 0.00 38.20 4.17
265 266 4.505217 GCATCCAACGCGCAGACG 62.505 66.667 5.73 0.00 44.07 4.18
266 267 3.422303 TGCATCCAACGCGCAGAC 61.422 61.111 5.73 0.00 0.00 3.51
267 268 3.422303 GTGCATCCAACGCGCAGA 61.422 61.111 5.73 0.00 39.67 4.26
268 269 4.799473 CGTGCATCCAACGCGCAG 62.799 66.667 5.73 2.42 39.89 5.18
273 274 4.101790 GTGGCCGTGCATCCAACG 62.102 66.667 0.00 0.00 33.57 4.10
274 275 3.747976 GGTGGCCGTGCATCCAAC 61.748 66.667 0.00 5.98 33.57 3.77
285 286 1.743394 CTTTTCTGGAATACGGTGGCC 59.257 52.381 0.00 0.00 0.00 5.36
286 287 1.743394 CCTTTTCTGGAATACGGTGGC 59.257 52.381 0.00 0.00 0.00 5.01
287 288 1.743394 GCCTTTTCTGGAATACGGTGG 59.257 52.381 0.00 0.00 0.00 4.61
288 289 1.743394 GGCCTTTTCTGGAATACGGTG 59.257 52.381 0.00 0.00 0.00 4.94
289 290 1.340697 GGGCCTTTTCTGGAATACGGT 60.341 52.381 0.84 0.00 0.00 4.83
290 291 1.340600 TGGGCCTTTTCTGGAATACGG 60.341 52.381 4.53 0.00 0.00 4.02
291 292 2.017049 CTGGGCCTTTTCTGGAATACG 58.983 52.381 4.53 0.00 0.00 3.06
292 293 3.017442 GTCTGGGCCTTTTCTGGAATAC 58.983 50.000 4.53 0.00 0.00 1.89
293 294 2.647299 TGTCTGGGCCTTTTCTGGAATA 59.353 45.455 4.53 0.00 0.00 1.75
294 295 1.428912 TGTCTGGGCCTTTTCTGGAAT 59.571 47.619 4.53 0.00 0.00 3.01
295 296 0.850100 TGTCTGGGCCTTTTCTGGAA 59.150 50.000 4.53 0.00 0.00 3.53
296 297 0.110486 GTGTCTGGGCCTTTTCTGGA 59.890 55.000 4.53 0.00 0.00 3.86
297 298 1.237285 CGTGTCTGGGCCTTTTCTGG 61.237 60.000 4.53 0.00 0.00 3.86
298 299 0.250295 TCGTGTCTGGGCCTTTTCTG 60.250 55.000 4.53 0.00 0.00 3.02
299 300 0.693049 ATCGTGTCTGGGCCTTTTCT 59.307 50.000 4.53 0.00 0.00 2.52
300 301 1.468914 GAATCGTGTCTGGGCCTTTTC 59.531 52.381 4.53 0.00 0.00 2.29
301 302 1.534729 GAATCGTGTCTGGGCCTTTT 58.465 50.000 4.53 0.00 0.00 2.27
302 303 0.322546 GGAATCGTGTCTGGGCCTTT 60.323 55.000 4.53 0.00 0.00 3.11
303 304 1.299976 GGAATCGTGTCTGGGCCTT 59.700 57.895 4.53 0.00 0.00 4.35
304 305 1.274703 ATGGAATCGTGTCTGGGCCT 61.275 55.000 4.53 0.00 0.00 5.19
305 306 0.394352 AATGGAATCGTGTCTGGGCC 60.394 55.000 0.00 0.00 0.00 5.80
306 307 0.734889 CAATGGAATCGTGTCTGGGC 59.265 55.000 0.00 0.00 0.00 5.36
307 308 0.734889 GCAATGGAATCGTGTCTGGG 59.265 55.000 0.00 0.00 0.00 4.45
308 309 0.734889 GGCAATGGAATCGTGTCTGG 59.265 55.000 0.00 0.00 0.00 3.86
309 310 0.374758 CGGCAATGGAATCGTGTCTG 59.625 55.000 0.00 0.00 0.00 3.51
310 311 1.369091 GCGGCAATGGAATCGTGTCT 61.369 55.000 0.00 0.00 0.00 3.41
311 312 1.062525 GCGGCAATGGAATCGTGTC 59.937 57.895 0.00 0.00 0.00 3.67
312 313 2.406616 GGCGGCAATGGAATCGTGT 61.407 57.895 3.07 0.00 0.00 4.49
313 314 2.408835 GGCGGCAATGGAATCGTG 59.591 61.111 3.07 0.00 0.00 4.35
314 315 2.828549 GGGCGGCAATGGAATCGT 60.829 61.111 12.47 0.00 0.00 3.73
315 316 3.595758 GGGGCGGCAATGGAATCG 61.596 66.667 12.47 0.00 0.00 3.34
316 317 1.612395 TTTGGGGCGGCAATGGAATC 61.612 55.000 12.47 0.00 0.00 2.52
317 318 0.982326 ATTTGGGGCGGCAATGGAAT 60.982 50.000 12.47 0.39 0.00 3.01
318 319 0.324738 TATTTGGGGCGGCAATGGAA 60.325 50.000 12.47 0.00 0.00 3.53
319 320 0.754957 CTATTTGGGGCGGCAATGGA 60.755 55.000 12.47 0.00 0.00 3.41
320 321 0.754957 TCTATTTGGGGCGGCAATGG 60.755 55.000 12.47 4.37 0.00 3.16
321 322 0.385390 GTCTATTTGGGGCGGCAATG 59.615 55.000 12.47 0.00 0.00 2.82
322 323 0.033601 TGTCTATTTGGGGCGGCAAT 60.034 50.000 12.47 4.67 0.00 3.56
323 324 0.679640 CTGTCTATTTGGGGCGGCAA 60.680 55.000 12.47 0.00 0.00 4.52
324 325 1.077787 CTGTCTATTTGGGGCGGCA 60.078 57.895 12.47 0.00 0.00 5.69
325 326 0.393808 TTCTGTCTATTTGGGGCGGC 60.394 55.000 0.00 0.00 0.00 6.53
326 327 2.222027 GATTCTGTCTATTTGGGGCGG 58.778 52.381 0.00 0.00 0.00 6.13
327 328 2.222027 GGATTCTGTCTATTTGGGGCG 58.778 52.381 0.00 0.00 0.00 6.13
328 329 2.222027 CGGATTCTGTCTATTTGGGGC 58.778 52.381 0.00 0.00 0.00 5.80
329 330 2.438021 TCCGGATTCTGTCTATTTGGGG 59.562 50.000 0.00 0.00 0.00 4.96
330 331 3.118408 TGTCCGGATTCTGTCTATTTGGG 60.118 47.826 7.81 0.00 0.00 4.12
331 332 4.137116 TGTCCGGATTCTGTCTATTTGG 57.863 45.455 7.81 0.00 0.00 3.28
332 333 6.494893 TTTTGTCCGGATTCTGTCTATTTG 57.505 37.500 7.81 0.00 0.00 2.32
333 334 6.095440 CCATTTTGTCCGGATTCTGTCTATTT 59.905 38.462 7.81 0.00 0.00 1.40
334 335 5.590259 CCATTTTGTCCGGATTCTGTCTATT 59.410 40.000 7.81 0.00 0.00 1.73
335 336 5.104527 TCCATTTTGTCCGGATTCTGTCTAT 60.105 40.000 7.81 0.00 0.00 1.98
336 337 4.224147 TCCATTTTGTCCGGATTCTGTCTA 59.776 41.667 7.81 0.00 0.00 2.59
337 338 3.009033 TCCATTTTGTCCGGATTCTGTCT 59.991 43.478 7.81 0.00 0.00 3.41
338 339 3.343617 TCCATTTTGTCCGGATTCTGTC 58.656 45.455 7.81 0.00 0.00 3.51
339 340 3.433306 TCCATTTTGTCCGGATTCTGT 57.567 42.857 7.81 0.00 0.00 3.41
340 341 3.696051 ACATCCATTTTGTCCGGATTCTG 59.304 43.478 7.81 1.29 37.44 3.02
341 342 3.947834 GACATCCATTTTGTCCGGATTCT 59.052 43.478 7.81 0.00 37.44 2.40
342 343 4.292977 GACATCCATTTTGTCCGGATTC 57.707 45.455 7.81 0.00 37.44 2.52
349 350 4.698304 TCCTAAACGGACATCCATTTTGTC 59.302 41.667 0.00 0.00 42.20 3.18
350 351 4.658063 TCCTAAACGGACATCCATTTTGT 58.342 39.130 0.00 0.00 36.69 2.83
351 352 5.504010 CGATCCTAAACGGACATCCATTTTG 60.504 44.000 0.00 0.00 46.80 2.44
352 353 4.574828 CGATCCTAAACGGACATCCATTTT 59.425 41.667 0.00 0.00 46.80 1.82
353 354 4.127171 CGATCCTAAACGGACATCCATTT 58.873 43.478 0.00 0.00 46.80 2.32
354 355 3.728845 CGATCCTAAACGGACATCCATT 58.271 45.455 0.00 0.00 46.80 3.16
355 356 2.548067 GCGATCCTAAACGGACATCCAT 60.548 50.000 0.00 0.00 46.80 3.41
356 357 1.202486 GCGATCCTAAACGGACATCCA 60.202 52.381 0.00 0.00 46.80 3.41
357 358 1.499049 GCGATCCTAAACGGACATCC 58.501 55.000 0.00 0.00 46.80 3.51
358 359 1.129326 CGCGATCCTAAACGGACATC 58.871 55.000 0.00 0.00 46.80 3.06
359 360 0.874607 GCGCGATCCTAAACGGACAT 60.875 55.000 12.10 0.00 46.80 3.06
360 361 1.517694 GCGCGATCCTAAACGGACA 60.518 57.895 12.10 0.00 46.80 4.02
361 362 2.574222 CGCGCGATCCTAAACGGAC 61.574 63.158 28.94 0.00 46.80 4.79
363 364 3.984765 GCGCGCGATCCTAAACGG 61.985 66.667 37.18 0.00 0.00 4.44
364 365 2.954868 AGCGCGCGATCCTAAACG 60.955 61.111 37.18 1.31 0.00 3.60
365 366 2.621000 CAGCGCGCGATCCTAAAC 59.379 61.111 37.18 13.39 0.00 2.01
366 367 2.584970 CCAGCGCGCGATCCTAAA 60.585 61.111 37.18 0.00 0.00 1.85
367 368 3.484742 CTCCAGCGCGCGATCCTAA 62.485 63.158 37.18 11.14 0.00 2.69
368 369 3.966104 CTCCAGCGCGCGATCCTA 61.966 66.667 37.18 13.98 0.00 2.94
371 372 3.918220 CAACTCCAGCGCGCGATC 61.918 66.667 37.18 17.71 0.00 3.69
379 380 1.923227 GCCTTTACGCCAACTCCAGC 61.923 60.000 0.00 0.00 0.00 4.85
380 381 0.605319 TGCCTTTACGCCAACTCCAG 60.605 55.000 0.00 0.00 0.00 3.86
381 382 0.605319 CTGCCTTTACGCCAACTCCA 60.605 55.000 0.00 0.00 0.00 3.86
382 383 1.923227 GCTGCCTTTACGCCAACTCC 61.923 60.000 0.00 0.00 0.00 3.85
383 384 0.955919 AGCTGCCTTTACGCCAACTC 60.956 55.000 0.00 0.00 0.00 3.01
384 385 1.073199 AGCTGCCTTTACGCCAACT 59.927 52.632 0.00 0.00 0.00 3.16
385 386 1.210155 CAGCTGCCTTTACGCCAAC 59.790 57.895 0.00 0.00 0.00 3.77
386 387 0.035598 TACAGCTGCCTTTACGCCAA 59.964 50.000 15.27 0.00 0.00 4.52
387 388 0.391130 CTACAGCTGCCTTTACGCCA 60.391 55.000 15.27 0.00 0.00 5.69
388 389 1.706287 GCTACAGCTGCCTTTACGCC 61.706 60.000 15.27 0.00 38.21 5.68
389 390 1.019278 TGCTACAGCTGCCTTTACGC 61.019 55.000 15.27 6.56 42.66 4.42
390 391 0.721718 GTGCTACAGCTGCCTTTACG 59.278 55.000 15.27 0.00 42.66 3.18
391 392 1.808411 TGTGCTACAGCTGCCTTTAC 58.192 50.000 15.27 7.65 42.66 2.01
392 393 2.151202 GTTGTGCTACAGCTGCCTTTA 58.849 47.619 15.27 0.00 42.66 1.85
393 394 0.954452 GTTGTGCTACAGCTGCCTTT 59.046 50.000 15.27 0.00 42.66 3.11
417 418 0.608035 ATACTGTGGCCGTGGGTTTG 60.608 55.000 0.00 0.00 0.00 2.93
436 437 5.163426 TGGTTTAGTAGACGTGGTTTTCAGA 60.163 40.000 0.00 0.00 0.00 3.27
438 439 5.021033 TGGTTTAGTAGACGTGGTTTTCA 57.979 39.130 0.00 0.00 0.00 2.69
469 470 1.258445 ACTGACCCCTAAGCTCCACG 61.258 60.000 0.00 0.00 0.00 4.94
523 545 0.466555 TGGTGAAAAGTTGTCCGGGG 60.467 55.000 0.00 0.00 0.00 5.73
524 546 1.616159 ATGGTGAAAAGTTGTCCGGG 58.384 50.000 0.00 0.00 0.00 5.73
525 547 3.057806 GGTTATGGTGAAAAGTTGTCCGG 60.058 47.826 0.00 0.00 0.00 5.14
526 548 3.057806 GGGTTATGGTGAAAAGTTGTCCG 60.058 47.826 0.00 0.00 0.00 4.79
527 549 3.057806 CGGGTTATGGTGAAAAGTTGTCC 60.058 47.826 0.00 0.00 0.00 4.02
529 551 2.295070 GCGGGTTATGGTGAAAAGTTGT 59.705 45.455 0.00 0.00 0.00 3.32
530 552 2.667171 CGCGGGTTATGGTGAAAAGTTG 60.667 50.000 0.00 0.00 0.00 3.16
531 553 1.538075 CGCGGGTTATGGTGAAAAGTT 59.462 47.619 0.00 0.00 0.00 2.66
532 554 1.161843 CGCGGGTTATGGTGAAAAGT 58.838 50.000 0.00 0.00 0.00 2.66
533 555 0.450184 CCGCGGGTTATGGTGAAAAG 59.550 55.000 20.10 0.00 0.00 2.27
534 556 1.587933 GCCGCGGGTTATGGTGAAAA 61.588 55.000 29.38 0.00 0.00 2.29
535 557 2.041686 GCCGCGGGTTATGGTGAAA 61.042 57.895 29.38 0.00 0.00 2.69
536 558 1.615165 TAGCCGCGGGTTATGGTGAA 61.615 55.000 37.09 12.22 0.00 3.18
537 559 1.615165 TTAGCCGCGGGTTATGGTGA 61.615 55.000 37.09 13.10 0.00 4.02
538 560 0.534203 ATTAGCCGCGGGTTATGGTG 60.534 55.000 37.09 1.17 0.00 4.17
539 561 0.534203 CATTAGCCGCGGGTTATGGT 60.534 55.000 36.14 17.85 31.57 3.55
540 562 0.534203 ACATTAGCCGCGGGTTATGG 60.534 55.000 41.63 29.65 37.08 2.74
541 563 0.586319 CACATTAGCCGCGGGTTATG 59.414 55.000 39.46 39.46 38.22 1.90
542 564 0.534203 CCACATTAGCCGCGGGTTAT 60.534 55.000 37.09 29.07 0.00 1.89
543 565 1.153329 CCACATTAGCCGCGGGTTA 60.153 57.895 37.09 28.03 0.00 2.85
555 577 2.875933 CCGCGGTTTCATATACCACATT 59.124 45.455 19.50 0.00 35.31 2.71
558 585 1.595794 CACCGCGGTTTCATATACCAC 59.404 52.381 32.11 0.00 35.31 4.16
720 2202 2.434774 GCGAAACAGGGGAAGGGT 59.565 61.111 0.00 0.00 0.00 4.34
772 2258 3.506096 CCGCGCCTCGACACTCTA 61.506 66.667 0.00 0.00 41.67 2.43
871 2365 0.825010 GGCTTGGGTGGATGCTATGG 60.825 60.000 0.00 0.00 0.00 2.74
933 2486 1.677966 GAAAGTTTCCCGCCTCCCC 60.678 63.158 4.11 0.00 0.00 4.81
974 2530 6.877322 GGCAAGAACTGATAGGTTTTGTAGTA 59.123 38.462 0.00 0.00 0.00 1.82
975 2531 5.705905 GGCAAGAACTGATAGGTTTTGTAGT 59.294 40.000 0.00 0.00 0.00 2.73
976 2532 5.705441 TGGCAAGAACTGATAGGTTTTGTAG 59.295 40.000 0.00 0.00 0.00 2.74
1064 2629 3.984200 GAGGTGCGGTCGTGGTAGC 62.984 68.421 0.00 0.00 0.00 3.58
1092 2657 2.622903 CTTTCACGCTCCGCCCGATA 62.623 60.000 0.00 0.00 0.00 2.92
1134 2699 2.617532 GCTCAGGCTCTTGAAGGACATT 60.618 50.000 0.00 0.00 35.22 2.71
1293 2858 4.078516 GCGCCCTTGTAGACCGGT 62.079 66.667 6.92 6.92 0.00 5.28
1311 2876 2.504244 CGGAGCTTGTCGTCGACC 60.504 66.667 22.05 7.42 0.00 4.79
1413 2978 2.020131 CATTGCACTCTGATCCGCC 58.980 57.895 0.00 0.00 0.00 6.13
1437 3005 3.200593 GCATCTGAGCGTGCTGGG 61.201 66.667 0.00 0.00 38.30 4.45
1446 3031 2.125461 TAATCACGCGAGCATCTGAG 57.875 50.000 15.93 0.00 0.00 3.35
1450 3035 2.410262 CCGAATTAATCACGCGAGCATC 60.410 50.000 15.93 0.00 0.00 3.91
1456 3041 1.924524 AGACACCGAATTAATCACGCG 59.075 47.619 3.53 3.53 0.00 6.01
1460 3045 3.119280 TCGAGCAGACACCGAATTAATCA 60.119 43.478 0.00 0.00 0.00 2.57
1471 3056 1.071605 GGTGTTCATCGAGCAGACAC 58.928 55.000 12.83 12.83 0.00 3.67
1478 3063 5.188327 TGATAAGCTAGGTGTTCATCGAG 57.812 43.478 0.00 0.00 0.00 4.04
1489 3074 4.156455 ACAACCCACATGATAAGCTAGG 57.844 45.455 0.00 0.00 0.00 3.02
1499 3084 3.305335 GCCTACAAAGAACAACCCACATG 60.305 47.826 0.00 0.00 0.00 3.21
1692 3306 3.058016 TCGAGAACCACCAAACGTACTAG 60.058 47.826 0.00 0.00 0.00 2.57
1733 3347 5.675538 CCCAGGTTTCCAAATTAACACAAA 58.324 37.500 0.00 0.00 0.00 2.83
1734 3348 4.443598 GCCCAGGTTTCCAAATTAACACAA 60.444 41.667 0.00 0.00 0.00 3.33
1751 3365 2.126071 CACTCGTACGTGCCCAGG 60.126 66.667 16.05 1.21 0.00 4.45
1782 3399 3.530535 GGACAAGAAGAGCTCATTCCTC 58.469 50.000 17.77 10.54 0.00 3.71
1785 3402 2.238395 AGGGGACAAGAAGAGCTCATTC 59.762 50.000 17.77 15.73 0.00 2.67
1786 3403 2.026449 CAGGGGACAAGAAGAGCTCATT 60.026 50.000 17.77 7.31 0.00 2.57
1794 3411 1.882623 GAAACTGCAGGGGACAAGAAG 59.117 52.381 19.93 0.00 0.00 2.85
1866 3486 3.831323 TGTTCTTTTGGATGGCAGAGAA 58.169 40.909 0.00 0.00 0.00 2.87
1875 3495 1.000274 GCAGGCGTTGTTCTTTTGGAT 60.000 47.619 0.00 0.00 0.00 3.41
1892 3516 6.473455 CAGTTCCTCTGTTTTAAAAACAGCAG 59.527 38.462 18.14 15.21 45.34 4.24
1998 3651 1.188219 GGTCAGTCTCCTGCTCCACA 61.188 60.000 0.00 0.00 38.66 4.17
2005 3658 4.223923 AGGATGTTTTAGGTCAGTCTCCTG 59.776 45.833 0.00 0.00 40.25 3.86
2186 3839 2.109425 AGTCTGAAATTACGGGTGGC 57.891 50.000 0.00 0.00 0.00 5.01
2187 3840 4.324267 AGAAAGTCTGAAATTACGGGTGG 58.676 43.478 0.00 0.00 0.00 4.61
2250 3908 6.237887 TGTTAGTAACCACCACTACAGTTT 57.762 37.500 10.51 0.00 0.00 2.66
2297 3959 8.603898 TTGTAGGAATTCCAGTGTATAAGAGA 57.396 34.615 26.22 0.00 38.89 3.10
2316 3978 4.153117 GTGCTCATCAGTCAGTTTTGTAGG 59.847 45.833 0.00 0.00 0.00 3.18
2333 3995 7.048629 TCAAGGTCAAATTATTTTGTGCTCA 57.951 32.000 9.31 0.00 42.37 4.26
2334 3996 7.945033 TTCAAGGTCAAATTATTTTGTGCTC 57.055 32.000 9.31 0.00 42.37 4.26
2339 4001 9.880157 ATCTGGATTCAAGGTCAAATTATTTTG 57.120 29.630 4.10 4.10 42.98 2.44
2486 4183 2.159653 GCTTGACTTATGTGGTGAAGCG 60.160 50.000 2.82 0.00 41.97 4.68
2592 4291 4.430007 ACAATGACGTACGCAGTGAATAT 58.570 39.130 31.29 16.04 45.73 1.28
2594 4293 2.683968 ACAATGACGTACGCAGTGAAT 58.316 42.857 31.29 16.81 45.73 2.57
2720 4419 0.452585 TTGTCACGTGTGTCTCGTCA 59.547 50.000 16.51 1.15 39.55 4.35
2910 4611 5.128827 CAGGTTGCTTTAGGTATGGTCTAGA 59.871 44.000 0.00 0.00 0.00 2.43
2924 4625 4.460263 TGTACAATCTGTCAGGTTGCTTT 58.540 39.130 23.14 8.86 0.00 3.51
2931 4632 5.122869 CCATGACTTTGTACAATCTGTCAGG 59.877 44.000 27.42 26.93 37.76 3.86
3060 4761 2.076863 CTCGAGGGCTTTTACCACTTG 58.923 52.381 3.91 0.00 0.00 3.16
3062 4763 0.036294 GCTCGAGGGCTTTTACCACT 60.036 55.000 15.58 0.00 0.00 4.00
3068 4769 3.607370 GACGGGCTCGAGGGCTTTT 62.607 63.158 15.95 0.00 40.65 2.27
3110 4811 1.288752 GAACACAAATGGGCCCACG 59.711 57.895 31.51 21.52 0.00 4.94
3233 4934 0.178767 CATGGATTGCTGAGTCGGGA 59.821 55.000 0.05 0.00 0.00 5.14
3314 8146 0.387929 AGCTCGACGACCTTTGTTGA 59.612 50.000 0.00 0.00 0.00 3.18
3357 8253 3.515901 CTGCTCACTTCCCTACCTTAGTT 59.484 47.826 0.00 0.00 0.00 2.24
3377 8274 6.753180 ACTCTGTGCATACTATATTGTCCTG 58.247 40.000 0.00 0.00 0.00 3.86
3561 8465 4.085261 GCGAAAATCAAAACCGGACTTTTC 60.085 41.667 9.46 12.03 32.16 2.29
3608 8516 6.672147 TGGTACTCGTCTCACTTTTAACTAC 58.328 40.000 0.00 0.00 0.00 2.73
3637 8545 1.082104 GTGAAGTTTTGCCGAGGCG 60.082 57.895 9.78 0.00 45.51 5.52
3639 8547 1.002468 CTGTGTGAAGTTTTGCCGAGG 60.002 52.381 0.00 0.00 0.00 4.63
3649 8557 5.415701 TGCTTTCTTTTTCTCTGTGTGAAGT 59.584 36.000 0.00 0.00 0.00 3.01
3650 8558 5.883661 TGCTTTCTTTTTCTCTGTGTGAAG 58.116 37.500 0.00 0.00 0.00 3.02
3652 8560 5.185454 TCTGCTTTCTTTTTCTCTGTGTGA 58.815 37.500 0.00 0.00 0.00 3.58
3653 8561 5.490139 TCTGCTTTCTTTTTCTCTGTGTG 57.510 39.130 0.00 0.00 0.00 3.82
3654 8562 6.545298 AGAATCTGCTTTCTTTTTCTCTGTGT 59.455 34.615 0.00 0.00 31.94 3.72
3655 8563 6.968250 AGAATCTGCTTTCTTTTTCTCTGTG 58.032 36.000 0.00 0.00 31.94 3.66
3656 8564 6.073331 CGAGAATCTGCTTTCTTTTTCTCTGT 60.073 38.462 8.36 0.00 37.82 3.41
3657 8565 6.073331 ACGAGAATCTGCTTTCTTTTTCTCTG 60.073 38.462 8.36 5.39 37.82 3.35
3658 8566 5.994668 ACGAGAATCTGCTTTCTTTTTCTCT 59.005 36.000 8.36 0.00 37.82 3.10
3659 8567 6.234723 ACGAGAATCTGCTTTCTTTTTCTC 57.765 37.500 0.00 0.00 36.10 2.87
3670 8578 3.118992 TCAGCACAATACGAGAATCTGCT 60.119 43.478 0.00 0.00 33.81 4.24
3671 8579 3.190079 TCAGCACAATACGAGAATCTGC 58.810 45.455 0.00 0.00 0.00 4.26
3686 8594 6.810911 TCATAATACCTTTCTCTCTCAGCAC 58.189 40.000 0.00 0.00 0.00 4.40
3751 8659 0.736325 CAACCTCACCGATGGTCGTC 60.736 60.000 0.00 0.00 38.40 4.20
3758 8666 0.400213 TTCTTGCCAACCTCACCGAT 59.600 50.000 0.00 0.00 0.00 4.18
3761 8669 2.206576 ATCTTCTTGCCAACCTCACC 57.793 50.000 0.00 0.00 0.00 4.02
3772 8680 6.258230 TCTGTGTTGCCATTTATCTTCTTG 57.742 37.500 0.00 0.00 0.00 3.02
3783 8691 5.981088 TGACATTTTATCTGTGTTGCCAT 57.019 34.783 0.00 0.00 0.00 4.40
3786 8694 8.741101 TTAACATGACATTTTATCTGTGTTGC 57.259 30.769 0.00 0.00 32.11 4.17
3819 8727 7.137426 GCTCATGACCTCAATAAATTCATGTC 58.863 38.462 9.14 0.00 42.71 3.06
3836 8744 6.655078 AACCCAATAATTATGGCTCATGAC 57.345 37.500 0.00 0.00 36.58 3.06
3864 8772 1.747206 GCCTTACTTGGCGATCACCAT 60.747 52.381 2.64 0.00 43.74 3.55
3865 8773 0.392461 GCCTTACTTGGCGATCACCA 60.392 55.000 0.00 0.00 43.74 4.17
3892 8801 2.264480 CGACCGTCATCTTGGGCA 59.736 61.111 0.00 0.00 30.25 5.36
3894 8803 2.511600 GGCGACCGTCATCTTGGG 60.512 66.667 0.00 0.00 0.00 4.12
3913 8822 4.339872 TGCATGCATGGTTTCTTTCTTT 57.660 36.364 27.34 0.00 0.00 2.52
3915 8824 3.428452 CGATGCATGCATGGTTTCTTTCT 60.428 43.478 36.73 10.02 36.70 2.52
3924 8833 1.003223 CACTACACGATGCATGCATGG 60.003 52.381 36.73 34.72 36.70 3.66
3937 8846 2.494870 ACGGTTATCTGGGACACTACAC 59.505 50.000 0.00 0.00 0.00 2.90
4008 8918 9.448294 GTGTTTATTGTACAACCACGATTAAAA 57.552 29.630 11.22 0.00 0.00 1.52
4011 8921 7.966246 AGTGTTTATTGTACAACCACGATTA 57.034 32.000 11.22 0.00 0.00 1.75
4055 8966 3.131396 GCTATGTGGGTTACGAATCTGG 58.869 50.000 0.00 0.00 0.00 3.86
4061 8972 2.025898 TCATCGCTATGTGGGTTACGA 58.974 47.619 0.00 0.00 34.50 3.43
4066 8977 2.384828 TGTAGTCATCGCTATGTGGGT 58.615 47.619 0.00 0.00 34.50 4.51
4067 8978 3.384668 CTTGTAGTCATCGCTATGTGGG 58.615 50.000 0.00 0.00 34.50 4.61
4071 8982 3.488678 CAGTGCTTGTAGTCATCGCTATG 59.511 47.826 0.00 0.00 0.00 2.23
4072 8983 3.381590 TCAGTGCTTGTAGTCATCGCTAT 59.618 43.478 0.00 0.00 0.00 2.97
4079 8990 1.339929 TCGCTTCAGTGCTTGTAGTCA 59.660 47.619 0.00 0.00 0.00 3.41
4081 8992 1.613925 TCTCGCTTCAGTGCTTGTAGT 59.386 47.619 0.00 0.00 0.00 2.73
4111 9022 2.033602 AAGGGGCGTTACAGTGGC 59.966 61.111 0.00 0.00 0.00 5.01
4114 9025 1.885163 CGAGGAAGGGGCGTTACAGT 61.885 60.000 0.00 0.00 0.00 3.55
4137 9049 1.760480 AACAAGGTTTGCCCGGCTT 60.760 52.632 11.61 0.00 38.74 4.35
4187 9099 2.159099 TGGTGCGTTGGATCTATGAGAC 60.159 50.000 0.00 0.00 0.00 3.36
4190 9102 3.342377 TTTGGTGCGTTGGATCTATGA 57.658 42.857 0.00 0.00 0.00 2.15
4195 9107 2.124122 GTTGTTTTGGTGCGTTGGATC 58.876 47.619 0.00 0.00 0.00 3.36
4197 9109 0.888619 TGTTGTTTTGGTGCGTTGGA 59.111 45.000 0.00 0.00 0.00 3.53
4198 9110 1.391826 GTTGTTGTTTTGGTGCGTTGG 59.608 47.619 0.00 0.00 0.00 3.77
4202 9114 1.747686 GCGGTTGTTGTTTTGGTGCG 61.748 55.000 0.00 0.00 0.00 5.34
4207 9119 2.234335 GGCGGCGGTTGTTGTTTTG 61.234 57.895 9.78 0.00 0.00 2.44
4209 9121 4.258932 CGGCGGCGGTTGTTGTTT 62.259 61.111 25.36 0.00 0.00 2.83
4225 9137 7.900782 TCCTTCTTATTTACACTTTTCCTCG 57.099 36.000 0.00 0.00 0.00 4.63
4228 9140 8.575649 TGGATCCTTCTTATTTACACTTTTCC 57.424 34.615 14.23 0.00 0.00 3.13
4244 9156 3.244561 TGTGTCTTCAGGTTGGATCCTTC 60.245 47.826 14.23 5.77 35.37 3.46
4256 9168 4.033932 TCATGTTTGTTCGTGTGTCTTCAG 59.966 41.667 0.00 0.00 0.00 3.02
4275 9187 3.885358 TCGGATCTATTCGTCGTTCATG 58.115 45.455 0.00 0.00 0.00 3.07
4277 9189 2.286831 GCTCGGATCTATTCGTCGTTCA 60.287 50.000 0.00 0.00 0.00 3.18
4288 9200 1.068588 CGGTGGATTTGCTCGGATCTA 59.931 52.381 0.00 0.00 0.00 1.98
4293 9205 0.391130 TCTTCGGTGGATTTGCTCGG 60.391 55.000 0.00 0.00 0.00 4.63
4308 9220 3.680458 GTGTCTTCGGTGGATCTTTCTTC 59.320 47.826 0.00 0.00 0.00 2.87
4313 9225 1.002087 GGTGTGTCTTCGGTGGATCTT 59.998 52.381 0.00 0.00 0.00 2.40
4324 9236 1.228552 GCATGTGGGGGTGTGTCTT 60.229 57.895 0.00 0.00 0.00 3.01
4339 9251 3.785859 AGCATCGTCGGTGGGCAT 61.786 61.111 7.76 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.