Multiple sequence alignment - TraesCS5B01G206000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G206000 chr5B 100.000 3161 0 0 590 3750 375225398 375222238 0.000000e+00 5838.0
1 TraesCS5B01G206000 chr5B 84.632 937 129 12 1023 1953 378903373 378904300 0.000000e+00 918.0
2 TraesCS5B01G206000 chr5B 84.216 944 129 18 1023 1956 378853284 378852351 0.000000e+00 900.0
3 TraesCS5B01G206000 chr5B 85.389 835 85 21 2816 3621 468651765 468652591 0.000000e+00 832.0
4 TraesCS5B01G206000 chr5B 100.000 361 0 0 1 361 375225987 375225627 0.000000e+00 667.0
5 TraesCS5B01G206000 chr5B 91.713 362 26 3 1 361 669478554 669478196 2.010000e-137 499.0
6 TraesCS5B01G206000 chr5B 91.436 362 26 3 1 361 524466871 524466514 3.370000e-135 492.0
7 TraesCS5B01G206000 chr5B 93.103 174 11 1 590 762 323879359 323879532 1.730000e-63 254.0
8 TraesCS5B01G206000 chr5B 97.368 38 1 0 763 800 375232281 375232244 8.690000e-07 65.8
9 TraesCS5B01G206000 chr5A 96.961 1843 36 8 896 2738 419831009 419829187 0.000000e+00 3075.0
10 TraesCS5B01G206000 chr5A 84.924 922 122 15 1042 1956 429998156 429997245 0.000000e+00 917.0
11 TraesCS5B01G206000 chr5A 84.517 943 125 19 1020 1953 430041588 430042518 0.000000e+00 913.0
12 TraesCS5B01G206000 chr5A 80.507 631 112 7 2097 2726 429996714 429996094 1.220000e-129 473.0
13 TraesCS5B01G206000 chr5A 100.000 34 0 0 769 802 547210330 547210363 3.130000e-06 63.9
14 TraesCS5B01G206000 chr5D 85.310 919 122 10 1043 1956 326384550 326383640 0.000000e+00 937.0
15 TraesCS5B01G206000 chr5D 84.009 938 139 9 1020 1953 326402831 326403761 0.000000e+00 891.0
16 TraesCS5B01G206000 chr5D 91.954 174 10 2 590 762 491286622 491286452 1.350000e-59 241.0
17 TraesCS5B01G206000 chr2D 83.024 1025 140 22 974 1983 538597438 538598443 0.000000e+00 898.0
18 TraesCS5B01G206000 chr2D 83.560 663 107 2 2078 2738 538598594 538599256 1.480000e-173 619.0
19 TraesCS5B01G206000 chr2D 86.064 531 44 16 3117 3621 11205496 11206022 9.160000e-151 544.0
20 TraesCS5B01G206000 chr2A 82.627 967 151 14 1020 1984 680548123 680549074 0.000000e+00 839.0
21 TraesCS5B01G206000 chr2A 89.831 59 5 1 3620 3677 518911195 518911253 1.440000e-09 75.0
22 TraesCS5B01G206000 chr2B 82.139 991 152 20 974 1953 641193324 641194300 0.000000e+00 826.0
23 TraesCS5B01G206000 chr2B 85.758 660 63 17 2990 3621 535263659 535264315 0.000000e+00 669.0
24 TraesCS5B01G206000 chr2B 83.133 664 108 4 2078 2738 641194506 641195168 1.490000e-168 603.0
25 TraesCS5B01G206000 chr2B 91.507 365 24 3 1 361 232453669 232454030 2.600000e-136 496.0
26 TraesCS5B01G206000 chr2B 94.828 174 8 1 590 762 25223282 25223109 1.720000e-68 270.0
27 TraesCS5B01G206000 chr3D 86.316 665 56 18 2987 3621 488862903 488862244 0.000000e+00 691.0
28 TraesCS5B01G206000 chr3D 90.164 61 5 1 3617 3676 170963959 170963899 1.120000e-10 78.7
29 TraesCS5B01G206000 chr3D 97.368 38 1 0 763 800 118534196 118534233 8.690000e-07 65.8
30 TraesCS5B01G206000 chr6D 86.159 578 48 15 3071 3621 47023664 47024236 2.490000e-166 595.0
31 TraesCS5B01G206000 chr6D 95.556 45 2 0 3618 3662 97016023 97015979 5.200000e-09 73.1
32 TraesCS5B01G206000 chr3B 92.033 364 26 2 1 361 528137234 528137597 3.340000e-140 508.0
33 TraesCS5B01G206000 chr3B 95.977 174 6 1 590 762 171098436 171098263 7.930000e-72 281.0
34 TraesCS5B01G206000 chr3B 95.402 174 7 1 590 762 171067667 171067494 3.690000e-70 276.0
35 TraesCS5B01G206000 chr3B 100.000 38 0 0 763 800 164452734 164452697 1.870000e-08 71.3
36 TraesCS5B01G206000 chr4B 91.989 362 28 1 1 361 623026392 623026031 1.200000e-139 507.0
37 TraesCS5B01G206000 chr4B 94.152 171 6 2 592 761 641539512 641539679 1.340000e-64 257.0
38 TraesCS5B01G206000 chr4B 96.226 53 2 0 3618 3670 276961367 276961315 1.860000e-13 87.9
39 TraesCS5B01G206000 chr7B 91.989 362 20 7 1 361 557460983 557461336 2.010000e-137 499.0
40 TraesCS5B01G206000 chr7B 95.402 174 7 1 590 762 591216427 591216600 3.690000e-70 276.0
41 TraesCS5B01G206000 chr7B 93.103 174 11 1 590 762 86167648 86167475 1.730000e-63 254.0
42 TraesCS5B01G206000 chr7B 94.231 52 3 0 3619 3670 66875888 66875837 3.100000e-11 80.5
43 TraesCS5B01G206000 chr1B 91.436 362 30 1 1 361 111966373 111966734 2.600000e-136 496.0
44 TraesCS5B01G206000 chr1B 80.711 591 112 2 2101 2690 52294559 52295148 3.410000e-125 459.0
45 TraesCS5B01G206000 chr1B 95.556 45 2 0 3618 3662 250983398 250983442 5.200000e-09 73.1
46 TraesCS5B01G206000 chr7D 91.643 359 26 3 1 358 105671598 105671243 9.360000e-136 494.0
47 TraesCS5B01G206000 chr7D 75.915 847 165 29 1115 1946 13698300 13697478 7.550000e-107 398.0
48 TraesCS5B01G206000 chr6B 91.233 365 26 4 1 359 688286244 688286608 3.370000e-135 492.0
49 TraesCS5B01G206000 chr4D 93.103 174 11 1 590 762 468857652 468857825 1.730000e-63 254.0
50 TraesCS5B01G206000 chr4D 90.164 61 5 1 3618 3677 44141216 44141156 1.120000e-10 78.7
51 TraesCS5B01G206000 chr4D 100.000 38 0 0 763 800 256584467 256584430 1.870000e-08 71.3
52 TraesCS5B01G206000 chr4D 91.837 49 4 0 3614 3662 297228030 297228078 6.720000e-08 69.4
53 TraesCS5B01G206000 chr4D 97.436 39 1 0 763 801 256559706 256559668 2.420000e-07 67.6
54 TraesCS5B01G206000 chr7A 83.212 137 19 4 3617 3750 336353122 336353257 5.090000e-24 122.0
55 TraesCS5B01G206000 chr1A 100.000 38 0 0 763 800 508931326 508931363 1.870000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G206000 chr5B 375222238 375225987 3749 True 3252.5 5838 100.0000 1 3750 2 chr5B.!!$R5 3749
1 TraesCS5B01G206000 chr5B 378903373 378904300 927 False 918.0 918 84.6320 1023 1953 1 chr5B.!!$F2 930
2 TraesCS5B01G206000 chr5B 378852351 378853284 933 True 900.0 900 84.2160 1023 1956 1 chr5B.!!$R2 933
3 TraesCS5B01G206000 chr5B 468651765 468652591 826 False 832.0 832 85.3890 2816 3621 1 chr5B.!!$F3 805
4 TraesCS5B01G206000 chr5A 419829187 419831009 1822 True 3075.0 3075 96.9610 896 2738 1 chr5A.!!$R1 1842
5 TraesCS5B01G206000 chr5A 430041588 430042518 930 False 913.0 913 84.5170 1020 1953 1 chr5A.!!$F1 933
6 TraesCS5B01G206000 chr5A 429996094 429998156 2062 True 695.0 917 82.7155 1042 2726 2 chr5A.!!$R2 1684
7 TraesCS5B01G206000 chr5D 326383640 326384550 910 True 937.0 937 85.3100 1043 1956 1 chr5D.!!$R1 913
8 TraesCS5B01G206000 chr5D 326402831 326403761 930 False 891.0 891 84.0090 1020 1953 1 chr5D.!!$F1 933
9 TraesCS5B01G206000 chr2D 538597438 538599256 1818 False 758.5 898 83.2920 974 2738 2 chr2D.!!$F2 1764
10 TraesCS5B01G206000 chr2D 11205496 11206022 526 False 544.0 544 86.0640 3117 3621 1 chr2D.!!$F1 504
11 TraesCS5B01G206000 chr2A 680548123 680549074 951 False 839.0 839 82.6270 1020 1984 1 chr2A.!!$F2 964
12 TraesCS5B01G206000 chr2B 641193324 641195168 1844 False 714.5 826 82.6360 974 2738 2 chr2B.!!$F3 1764
13 TraesCS5B01G206000 chr2B 535263659 535264315 656 False 669.0 669 85.7580 2990 3621 1 chr2B.!!$F2 631
14 TraesCS5B01G206000 chr3D 488862244 488862903 659 True 691.0 691 86.3160 2987 3621 1 chr3D.!!$R2 634
15 TraesCS5B01G206000 chr6D 47023664 47024236 572 False 595.0 595 86.1590 3071 3621 1 chr6D.!!$F1 550
16 TraesCS5B01G206000 chr1B 52294559 52295148 589 False 459.0 459 80.7110 2101 2690 1 chr1B.!!$F1 589
17 TraesCS5B01G206000 chr7D 13697478 13698300 822 True 398.0 398 75.9150 1115 1946 1 chr7D.!!$R1 831

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
859 860 0.034337 GTGGCTCACGAGGTTGGTTA 59.966 55.0 0.0 0.0 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2784 3222 0.108329 AGTAACCCAGGCATTCGACG 60.108 55.0 0.0 0.0 0.0 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.667236 TGCAATTCTACATGCCGAGG 58.333 50.000 0.00 0.00 41.87 4.63
20 21 1.209261 TGCAATTCTACATGCCGAGGA 59.791 47.619 0.00 0.00 41.87 3.71
21 22 1.869767 GCAATTCTACATGCCGAGGAG 59.130 52.381 0.00 0.00 36.56 3.69
22 23 2.487934 CAATTCTACATGCCGAGGAGG 58.512 52.381 0.00 0.00 44.97 4.30
23 24 1.794714 ATTCTACATGCCGAGGAGGT 58.205 50.000 0.00 0.00 43.70 3.85
24 25 1.568504 TTCTACATGCCGAGGAGGTT 58.431 50.000 0.00 0.00 43.70 3.50
25 26 0.824109 TCTACATGCCGAGGAGGTTG 59.176 55.000 0.00 0.00 43.70 3.77
26 27 0.537188 CTACATGCCGAGGAGGTTGT 59.463 55.000 0.00 0.00 43.70 3.32
27 28 1.754803 CTACATGCCGAGGAGGTTGTA 59.245 52.381 0.00 0.00 43.70 2.41
28 29 0.537188 ACATGCCGAGGAGGTTGTAG 59.463 55.000 0.00 0.00 43.70 2.74
29 30 0.824109 CATGCCGAGGAGGTTGTAGA 59.176 55.000 0.00 0.00 43.70 2.59
30 31 1.207089 CATGCCGAGGAGGTTGTAGAA 59.793 52.381 0.00 0.00 43.70 2.10
31 32 0.606604 TGCCGAGGAGGTTGTAGAAC 59.393 55.000 0.00 0.00 43.70 3.01
41 42 3.427161 GGTTGTAGAACCGCGTATAGT 57.573 47.619 5.96 0.00 42.47 2.12
42 43 3.366719 GGTTGTAGAACCGCGTATAGTC 58.633 50.000 5.96 0.00 42.47 2.59
43 44 3.031812 GTTGTAGAACCGCGTATAGTCG 58.968 50.000 4.92 0.00 0.00 4.18
51 52 2.426425 CGTATAGTCGCCGCCGTC 60.426 66.667 0.00 0.00 35.54 4.79
52 53 2.717485 GTATAGTCGCCGCCGTCA 59.283 61.111 0.00 0.00 35.54 4.35
53 54 1.285023 GTATAGTCGCCGCCGTCAT 59.715 57.895 0.00 0.00 35.54 3.06
54 55 0.728466 GTATAGTCGCCGCCGTCATC 60.728 60.000 0.00 0.00 35.54 2.92
55 56 1.167781 TATAGTCGCCGCCGTCATCA 61.168 55.000 0.00 0.00 35.54 3.07
56 57 1.806461 ATAGTCGCCGCCGTCATCAT 61.806 55.000 0.00 0.00 35.54 2.45
57 58 2.402282 TAGTCGCCGCCGTCATCATC 62.402 60.000 0.00 0.00 35.54 2.92
58 59 4.923710 TCGCCGCCGTCATCATCG 62.924 66.667 0.00 0.00 35.54 3.84
60 61 3.330853 GCCGCCGTCATCATCGTC 61.331 66.667 0.00 0.00 0.00 4.20
61 62 2.104132 CCGCCGTCATCATCGTCA 59.896 61.111 0.00 0.00 0.00 4.35
62 63 1.300156 CCGCCGTCATCATCGTCAT 60.300 57.895 0.00 0.00 0.00 3.06
63 64 1.278172 CCGCCGTCATCATCGTCATC 61.278 60.000 0.00 0.00 0.00 2.92
64 65 1.600284 CGCCGTCATCATCGTCATCG 61.600 60.000 0.00 0.00 38.55 3.84
65 66 0.595053 GCCGTCATCATCGTCATCGT 60.595 55.000 0.00 0.00 38.33 3.73
66 67 1.399572 CCGTCATCATCGTCATCGTC 58.600 55.000 0.00 0.00 38.33 4.20
67 68 1.037998 CGTCATCATCGTCATCGTCG 58.962 55.000 0.00 0.00 38.33 5.12
68 69 1.594760 CGTCATCATCGTCATCGTCGT 60.595 52.381 0.00 0.00 38.33 4.34
69 70 2.037649 GTCATCATCGTCATCGTCGTC 58.962 52.381 0.00 0.00 38.33 4.20
70 71 1.037998 CATCATCGTCATCGTCGTCG 58.962 55.000 0.00 0.00 38.33 5.12
71 72 0.656259 ATCATCGTCATCGTCGTCGT 59.344 50.000 1.33 0.00 38.33 4.34
72 73 0.445043 TCATCGTCATCGTCGTCGTT 59.555 50.000 1.33 0.00 38.33 3.85
73 74 0.561593 CATCGTCATCGTCGTCGTTG 59.438 55.000 6.76 6.76 37.89 4.10
74 75 1.132199 ATCGTCATCGTCGTCGTTGC 61.132 55.000 8.02 3.76 36.90 4.17
75 76 2.774951 CGTCATCGTCGTCGTTGCC 61.775 63.158 8.02 0.00 36.90 4.52
76 77 2.503158 TCATCGTCGTCGTTGCCG 60.503 61.111 8.02 0.00 36.90 5.69
77 78 4.191485 CATCGTCGTCGTTGCCGC 62.191 66.667 1.33 0.00 38.33 6.53
105 106 4.687215 GACGCTGTCCCTGCTGCA 62.687 66.667 0.88 0.88 33.72 4.41
106 107 4.254709 ACGCTGTCCCTGCTGCAA 62.255 61.111 3.02 0.00 33.72 4.08
107 108 3.730761 CGCTGTCCCTGCTGCAAC 61.731 66.667 3.02 0.00 33.72 4.17
108 109 3.368571 GCTGTCCCTGCTGCAACC 61.369 66.667 3.02 0.00 34.18 3.77
109 110 2.674380 CTGTCCCTGCTGCAACCC 60.674 66.667 3.02 0.00 0.00 4.11
110 111 3.177884 TGTCCCTGCTGCAACCCT 61.178 61.111 3.02 0.00 0.00 4.34
111 112 2.360475 GTCCCTGCTGCAACCCTC 60.360 66.667 3.02 0.00 0.00 4.30
112 113 3.650950 TCCCTGCTGCAACCCTCC 61.651 66.667 3.02 0.00 0.00 4.30
113 114 4.748144 CCCTGCTGCAACCCTCCC 62.748 72.222 3.02 0.00 0.00 4.30
114 115 4.748144 CCTGCTGCAACCCTCCCC 62.748 72.222 3.02 0.00 0.00 4.81
143 144 3.307906 CGGGTTGGACAGTCCGGA 61.308 66.667 15.24 0.00 40.17 5.14
144 145 2.663196 GGGTTGGACAGTCCGGAG 59.337 66.667 15.24 0.00 40.17 4.63
173 174 4.148825 GCCGTGGCTGTCGAGGAT 62.149 66.667 2.98 0.00 38.26 3.24
174 175 2.105128 CCGTGGCTGTCGAGGATC 59.895 66.667 0.00 0.00 0.00 3.36
175 176 2.710902 CCGTGGCTGTCGAGGATCA 61.711 63.158 0.00 0.00 33.17 2.92
176 177 1.517257 CGTGGCTGTCGAGGATCAC 60.517 63.158 0.00 0.00 33.17 3.06
177 178 1.517257 GTGGCTGTCGAGGATCACG 60.517 63.158 0.00 0.00 33.17 4.35
178 179 1.677633 TGGCTGTCGAGGATCACGA 60.678 57.895 9.54 9.54 37.43 4.35
183 184 3.872728 TCGAGGATCACGACGCCG 61.873 66.667 9.54 0.00 42.50 6.46
221 222 4.770874 TTTGCGGGCGGCTACCTC 62.771 66.667 18.19 0.00 44.05 3.85
227 228 3.541713 GGCGGCTACCTCCTCCAG 61.542 72.222 0.00 0.00 31.35 3.86
252 253 4.147449 CGCTGCCGGACCATCTCA 62.147 66.667 5.05 0.00 0.00 3.27
253 254 2.507944 GCTGCCGGACCATCTCAT 59.492 61.111 5.05 0.00 0.00 2.90
254 255 1.596477 GCTGCCGGACCATCTCATC 60.596 63.158 5.05 0.00 0.00 2.92
255 256 1.300465 CTGCCGGACCATCTCATCG 60.300 63.158 5.05 0.00 0.00 3.84
256 257 2.663188 GCCGGACCATCTCATCGC 60.663 66.667 5.05 0.00 0.00 4.58
257 258 2.355126 CCGGACCATCTCATCGCG 60.355 66.667 0.00 0.00 0.00 5.87
258 259 2.355126 CGGACCATCTCATCGCGG 60.355 66.667 6.13 0.00 0.00 6.46
259 260 2.845550 CGGACCATCTCATCGCGGA 61.846 63.158 6.13 0.00 0.00 5.54
260 261 1.006805 GGACCATCTCATCGCGGAG 60.007 63.158 6.13 6.10 36.21 4.63
261 262 1.006805 GACCATCTCATCGCGGAGG 60.007 63.158 6.13 0.00 35.58 4.30
262 263 1.739338 GACCATCTCATCGCGGAGGT 61.739 60.000 6.13 0.00 35.58 3.85
263 264 0.467474 ACCATCTCATCGCGGAGGTA 60.467 55.000 6.13 0.00 35.58 3.08
264 265 0.242286 CCATCTCATCGCGGAGGTAG 59.758 60.000 6.13 0.00 35.58 3.18
265 266 0.955178 CATCTCATCGCGGAGGTAGT 59.045 55.000 6.13 0.00 35.58 2.73
266 267 1.338337 CATCTCATCGCGGAGGTAGTT 59.662 52.381 6.13 0.00 35.58 2.24
267 268 0.738975 TCTCATCGCGGAGGTAGTTG 59.261 55.000 6.13 0.00 35.58 3.16
268 269 0.456221 CTCATCGCGGAGGTAGTTGT 59.544 55.000 6.13 0.00 0.00 3.32
269 270 0.454600 TCATCGCGGAGGTAGTTGTC 59.545 55.000 6.13 0.00 0.00 3.18
270 271 0.527817 CATCGCGGAGGTAGTTGTCC 60.528 60.000 6.13 0.00 0.00 4.02
271 272 1.673808 ATCGCGGAGGTAGTTGTCCC 61.674 60.000 6.13 0.00 0.00 4.46
272 273 2.183555 GCGGAGGTAGTTGTCCCG 59.816 66.667 0.00 0.00 42.74 5.14
273 274 2.183555 CGGAGGTAGTTGTCCCGC 59.816 66.667 0.00 0.00 33.47 6.13
274 275 2.183555 GGAGGTAGTTGTCCCGCG 59.816 66.667 0.00 0.00 0.00 6.46
275 276 2.508663 GAGGTAGTTGTCCCGCGC 60.509 66.667 0.00 0.00 0.00 6.86
276 277 4.078516 AGGTAGTTGTCCCGCGCC 62.079 66.667 0.00 0.00 0.00 6.53
278 279 4.382320 GTAGTTGTCCCGCGCCCA 62.382 66.667 0.00 0.00 0.00 5.36
279 280 4.382320 TAGTTGTCCCGCGCCCAC 62.382 66.667 0.00 0.00 0.00 4.61
284 285 4.157120 GTCCCGCGCCCACTGTAT 62.157 66.667 0.00 0.00 0.00 2.29
285 286 4.155733 TCCCGCGCCCACTGTATG 62.156 66.667 0.00 0.00 0.00 2.39
294 295 1.443407 CCACTGTATGGCCTCCTCG 59.557 63.158 3.32 0.00 43.24 4.63
295 296 1.330655 CCACTGTATGGCCTCCTCGT 61.331 60.000 3.32 0.00 43.24 4.18
296 297 0.103208 CACTGTATGGCCTCCTCGTC 59.897 60.000 3.32 0.00 0.00 4.20
297 298 1.360551 CTGTATGGCCTCCTCGTCG 59.639 63.158 3.32 0.00 0.00 5.12
298 299 2.076622 CTGTATGGCCTCCTCGTCGG 62.077 65.000 3.32 0.00 0.00 4.79
299 300 1.826921 GTATGGCCTCCTCGTCGGA 60.827 63.158 3.32 0.00 40.30 4.55
323 324 4.365505 GCGCCGGGCTATCTCCTC 62.366 72.222 18.34 0.00 39.11 3.71
324 325 4.044484 CGCCGGGCTATCTCCTCG 62.044 72.222 18.34 0.00 0.00 4.63
325 326 2.913060 GCCGGGCTATCTCCTCGT 60.913 66.667 12.87 0.00 0.00 4.18
326 327 1.602888 GCCGGGCTATCTCCTCGTA 60.603 63.158 12.87 0.00 0.00 3.43
327 328 1.864725 GCCGGGCTATCTCCTCGTAC 61.865 65.000 12.87 0.00 0.00 3.67
328 329 0.250814 CCGGGCTATCTCCTCGTACT 60.251 60.000 0.00 0.00 0.00 2.73
329 330 1.158434 CGGGCTATCTCCTCGTACTC 58.842 60.000 0.00 0.00 0.00 2.59
330 331 1.270947 CGGGCTATCTCCTCGTACTCT 60.271 57.143 0.00 0.00 0.00 3.24
331 332 2.156098 GGGCTATCTCCTCGTACTCTG 58.844 57.143 0.00 0.00 0.00 3.35
332 333 1.538075 GGCTATCTCCTCGTACTCTGC 59.462 57.143 0.00 0.00 0.00 4.26
333 334 1.195900 GCTATCTCCTCGTACTCTGCG 59.804 57.143 0.00 0.00 0.00 5.18
334 335 1.801771 CTATCTCCTCGTACTCTGCGG 59.198 57.143 0.00 0.00 0.00 5.69
335 336 0.820074 ATCTCCTCGTACTCTGCGGG 60.820 60.000 0.00 0.00 0.00 6.13
338 339 3.111939 CTCGTACTCTGCGGGGAG 58.888 66.667 0.00 0.00 39.09 4.30
339 340 2.439701 TCGTACTCTGCGGGGAGG 60.440 66.667 0.00 0.00 37.63 4.30
340 341 4.208686 CGTACTCTGCGGGGAGGC 62.209 72.222 0.00 0.00 37.63 4.70
341 342 3.851128 GTACTCTGCGGGGAGGCC 61.851 72.222 0.00 0.00 37.63 5.19
606 607 3.637273 AGGCGTGTCCTGGGTTCC 61.637 66.667 0.00 0.00 45.54 3.62
610 611 3.637273 GTGTCCTGGGTTCCGGCT 61.637 66.667 0.00 0.00 0.00 5.52
611 612 2.852075 TGTCCTGGGTTCCGGCTT 60.852 61.111 0.00 0.00 0.00 4.35
612 613 2.359975 GTCCTGGGTTCCGGCTTG 60.360 66.667 0.00 0.00 0.00 4.01
613 614 2.528127 TCCTGGGTTCCGGCTTGA 60.528 61.111 0.00 0.00 0.00 3.02
614 615 2.359975 CCTGGGTTCCGGCTTGAC 60.360 66.667 0.00 0.00 0.00 3.18
615 616 2.742372 CTGGGTTCCGGCTTGACG 60.742 66.667 0.00 0.00 0.00 4.35
689 690 3.842923 CCTCGGCGTCCATGAGCT 61.843 66.667 6.85 0.00 0.00 4.09
690 691 2.279120 CTCGGCGTCCATGAGCTC 60.279 66.667 6.82 6.82 0.00 4.09
691 692 3.781770 CTCGGCGTCCATGAGCTCC 62.782 68.421 12.15 0.00 0.00 4.70
692 693 4.899239 CGGCGTCCATGAGCTCCC 62.899 72.222 12.15 1.78 0.00 4.30
693 694 3.785859 GGCGTCCATGAGCTCCCA 61.786 66.667 12.15 0.00 0.00 4.37
694 695 2.512515 GCGTCCATGAGCTCCCAC 60.513 66.667 12.15 1.37 0.00 4.61
695 696 2.202797 CGTCCATGAGCTCCCACG 60.203 66.667 12.15 10.09 0.00 4.94
696 697 2.982130 GTCCATGAGCTCCCACGT 59.018 61.111 12.15 0.00 0.00 4.49
697 698 1.153549 GTCCATGAGCTCCCACGTC 60.154 63.158 12.15 0.00 0.00 4.34
698 699 2.202797 CCATGAGCTCCCACGTCG 60.203 66.667 12.15 0.00 0.00 5.12
699 700 2.202797 CATGAGCTCCCACGTCGG 60.203 66.667 12.15 0.00 0.00 4.79
700 701 4.148825 ATGAGCTCCCACGTCGGC 62.149 66.667 12.15 0.00 0.00 5.54
705 706 4.180946 CTCCCACGTCGGCGAGAG 62.181 72.222 20.03 15.35 42.00 3.20
706 707 4.710167 TCCCACGTCGGCGAGAGA 62.710 66.667 20.03 0.00 42.00 3.10
707 708 3.744719 CCCACGTCGGCGAGAGAA 61.745 66.667 20.03 0.00 42.00 2.87
708 709 2.202492 CCACGTCGGCGAGAGAAG 60.202 66.667 20.03 6.22 42.00 2.85
709 710 2.202492 CACGTCGGCGAGAGAAGG 60.202 66.667 20.03 0.00 42.00 3.46
710 711 2.359602 ACGTCGGCGAGAGAAGGA 60.360 61.111 20.03 0.00 42.00 3.36
711 712 2.100603 CGTCGGCGAGAGAAGGAC 59.899 66.667 11.20 0.00 41.33 3.85
712 713 2.100603 GTCGGCGAGAGAAGGACG 59.899 66.667 11.20 0.00 0.00 4.79
713 714 3.132139 TCGGCGAGAGAAGGACGG 61.132 66.667 4.99 0.00 0.00 4.79
714 715 4.194720 CGGCGAGAGAAGGACGGG 62.195 72.222 0.00 0.00 0.00 5.28
715 716 3.839432 GGCGAGAGAAGGACGGGG 61.839 72.222 0.00 0.00 0.00 5.73
716 717 3.839432 GCGAGAGAAGGACGGGGG 61.839 72.222 0.00 0.00 0.00 5.40
717 718 2.044252 CGAGAGAAGGACGGGGGA 60.044 66.667 0.00 0.00 0.00 4.81
718 719 2.122167 CGAGAGAAGGACGGGGGAG 61.122 68.421 0.00 0.00 0.00 4.30
719 720 2.364448 AGAGAAGGACGGGGGAGC 60.364 66.667 0.00 0.00 0.00 4.70
720 721 3.839432 GAGAAGGACGGGGGAGCG 61.839 72.222 0.00 0.00 0.00 5.03
730 731 4.828296 GGGGAGCGGGGTACTCGA 62.828 72.222 12.01 0.00 34.87 4.04
731 732 3.217743 GGGAGCGGGGTACTCGAG 61.218 72.222 11.84 11.84 34.87 4.04
732 733 3.902086 GGAGCGGGGTACTCGAGC 61.902 72.222 13.61 8.27 34.87 5.03
733 734 3.902086 GAGCGGGGTACTCGAGCC 61.902 72.222 13.61 6.43 45.83 4.70
734 735 4.444081 AGCGGGGTACTCGAGCCT 62.444 66.667 13.61 0.00 45.82 4.58
735 736 3.902086 GCGGGGTACTCGAGCCTC 61.902 72.222 13.61 5.53 45.82 4.70
736 737 3.584052 CGGGGTACTCGAGCCTCG 61.584 72.222 15.59 15.59 45.82 4.63
737 738 3.217743 GGGGTACTCGAGCCTCGG 61.218 72.222 15.08 7.64 45.82 4.63
738 739 3.902086 GGGTACTCGAGCCTCGGC 61.902 72.222 15.08 0.00 42.96 5.54
739 740 3.138798 GGTACTCGAGCCTCGGCA 61.139 66.667 15.08 0.00 44.88 5.69
740 741 2.491022 GGTACTCGAGCCTCGGCAT 61.491 63.158 15.08 2.65 44.88 4.40
741 742 1.299468 GTACTCGAGCCTCGGCATG 60.299 63.158 15.08 5.17 44.88 4.06
742 743 1.753078 TACTCGAGCCTCGGCATGT 60.753 57.895 15.08 10.56 44.88 3.21
743 744 1.320344 TACTCGAGCCTCGGCATGTT 61.320 55.000 15.08 0.00 44.88 2.71
744 745 2.125552 TCGAGCCTCGGCATGTTG 60.126 61.111 15.08 0.00 44.88 3.33
745 746 3.869272 CGAGCCTCGGCATGTTGC 61.869 66.667 6.13 0.00 44.88 4.17
754 755 2.434185 GCATGTTGCCGTCCTCGA 60.434 61.111 0.00 0.00 37.42 4.04
755 756 1.815421 GCATGTTGCCGTCCTCGAT 60.815 57.895 0.00 0.00 37.42 3.59
756 757 2.009108 CATGTTGCCGTCCTCGATG 58.991 57.895 0.00 0.00 39.71 3.84
757 758 0.740868 CATGTTGCCGTCCTCGATGT 60.741 55.000 0.00 0.00 39.71 3.06
758 759 0.821517 ATGTTGCCGTCCTCGATGTA 59.178 50.000 0.00 0.00 39.71 2.29
759 760 0.108992 TGTTGCCGTCCTCGATGTAC 60.109 55.000 0.00 0.00 39.71 2.90
760 761 0.172803 GTTGCCGTCCTCGATGTACT 59.827 55.000 0.00 0.00 39.71 2.73
761 762 0.454600 TTGCCGTCCTCGATGTACTC 59.545 55.000 0.00 0.00 39.71 2.59
762 763 0.678684 TGCCGTCCTCGATGTACTCA 60.679 55.000 0.00 0.00 39.71 3.41
763 764 0.669077 GCCGTCCTCGATGTACTCAT 59.331 55.000 0.00 0.00 39.71 2.90
764 765 1.067212 GCCGTCCTCGATGTACTCATT 59.933 52.381 0.00 0.00 39.71 2.57
765 766 2.292569 GCCGTCCTCGATGTACTCATTA 59.707 50.000 0.00 0.00 39.71 1.90
766 767 3.057456 GCCGTCCTCGATGTACTCATTAT 60.057 47.826 0.00 0.00 39.71 1.28
767 768 4.724303 CCGTCCTCGATGTACTCATTATC 58.276 47.826 0.00 0.00 39.71 1.75
768 769 4.379603 CCGTCCTCGATGTACTCATTATCC 60.380 50.000 0.00 0.00 39.71 2.59
769 770 4.379603 CGTCCTCGATGTACTCATTATCCC 60.380 50.000 0.00 0.00 39.71 3.85
770 771 4.767928 GTCCTCGATGTACTCATTATCCCT 59.232 45.833 0.00 0.00 34.06 4.20
771 772 5.244178 GTCCTCGATGTACTCATTATCCCTT 59.756 44.000 0.00 0.00 34.06 3.95
772 773 6.433404 GTCCTCGATGTACTCATTATCCCTTA 59.567 42.308 0.00 0.00 34.06 2.69
773 774 7.008332 TCCTCGATGTACTCATTATCCCTTAA 58.992 38.462 0.00 0.00 34.06 1.85
774 775 7.674348 TCCTCGATGTACTCATTATCCCTTAAT 59.326 37.037 0.00 0.00 34.06 1.40
775 776 8.314751 CCTCGATGTACTCATTATCCCTTAATT 58.685 37.037 0.00 0.00 34.06 1.40
844 845 4.336532 AAAATTCGTTATGACTCGTGGC 57.663 40.909 0.00 0.00 0.00 5.01
845 846 2.961526 ATTCGTTATGACTCGTGGCT 57.038 45.000 0.00 0.00 0.00 4.75
846 847 2.273370 TTCGTTATGACTCGTGGCTC 57.727 50.000 0.00 0.00 0.00 4.70
847 848 1.170442 TCGTTATGACTCGTGGCTCA 58.830 50.000 0.00 0.00 0.00 4.26
848 849 1.135489 TCGTTATGACTCGTGGCTCAC 60.135 52.381 0.00 0.00 0.00 3.51
857 858 2.426023 GTGGCTCACGAGGTTGGT 59.574 61.111 0.00 0.00 0.00 3.67
858 859 1.227853 GTGGCTCACGAGGTTGGTT 60.228 57.895 0.00 0.00 0.00 3.67
859 860 0.034337 GTGGCTCACGAGGTTGGTTA 59.966 55.000 0.00 0.00 0.00 2.85
860 861 0.981183 TGGCTCACGAGGTTGGTTAT 59.019 50.000 0.00 0.00 0.00 1.89
861 862 1.349688 TGGCTCACGAGGTTGGTTATT 59.650 47.619 0.00 0.00 0.00 1.40
862 863 2.568062 TGGCTCACGAGGTTGGTTATTA 59.432 45.455 0.00 0.00 0.00 0.98
863 864 3.199071 TGGCTCACGAGGTTGGTTATTAT 59.801 43.478 0.00 0.00 0.00 1.28
864 865 4.406326 TGGCTCACGAGGTTGGTTATTATA 59.594 41.667 0.00 0.00 0.00 0.98
865 866 4.748600 GGCTCACGAGGTTGGTTATTATAC 59.251 45.833 0.00 0.00 0.00 1.47
866 867 5.353938 GCTCACGAGGTTGGTTATTATACA 58.646 41.667 0.00 0.00 0.00 2.29
867 868 5.813672 GCTCACGAGGTTGGTTATTATACAA 59.186 40.000 0.00 0.00 0.00 2.41
868 869 6.482308 GCTCACGAGGTTGGTTATTATACAAT 59.518 38.462 0.00 0.00 0.00 2.71
869 870 7.012044 GCTCACGAGGTTGGTTATTATACAATT 59.988 37.037 0.00 0.00 0.00 2.32
870 871 8.795842 TCACGAGGTTGGTTATTATACAATTT 57.204 30.769 0.00 0.00 0.00 1.82
871 872 8.885722 TCACGAGGTTGGTTATTATACAATTTC 58.114 33.333 0.00 0.00 0.00 2.17
872 873 8.126700 CACGAGGTTGGTTATTATACAATTTCC 58.873 37.037 0.00 0.00 0.00 3.13
873 874 7.830201 ACGAGGTTGGTTATTATACAATTTCCA 59.170 33.333 0.00 0.00 0.00 3.53
874 875 8.846211 CGAGGTTGGTTATTATACAATTTCCAT 58.154 33.333 0.00 0.00 30.91 3.41
876 877 9.936329 AGGTTGGTTATTATACAATTTCCATCT 57.064 29.630 0.00 0.00 30.91 2.90
877 878 9.965824 GGTTGGTTATTATACAATTTCCATCTG 57.034 33.333 0.00 0.00 30.91 2.90
880 881 9.349713 TGGTTATTATACAATTTCCATCTGTCC 57.650 33.333 0.00 0.00 0.00 4.02
881 882 8.504005 GGTTATTATACAATTTCCATCTGTCCG 58.496 37.037 0.00 0.00 0.00 4.79
882 883 9.052759 GTTATTATACAATTTCCATCTGTCCGT 57.947 33.333 0.00 0.00 0.00 4.69
883 884 9.621629 TTATTATACAATTTCCATCTGTCCGTT 57.378 29.630 0.00 0.00 0.00 4.44
884 885 7.931578 TTATACAATTTCCATCTGTCCGTTT 57.068 32.000 0.00 0.00 0.00 3.60
885 886 4.766404 ACAATTTCCATCTGTCCGTTTC 57.234 40.909 0.00 0.00 0.00 2.78
886 887 4.141287 ACAATTTCCATCTGTCCGTTTCA 58.859 39.130 0.00 0.00 0.00 2.69
887 888 4.582656 ACAATTTCCATCTGTCCGTTTCAA 59.417 37.500 0.00 0.00 0.00 2.69
888 889 5.068460 ACAATTTCCATCTGTCCGTTTCAAA 59.932 36.000 0.00 0.00 0.00 2.69
889 890 5.782893 ATTTCCATCTGTCCGTTTCAAAA 57.217 34.783 0.00 0.00 0.00 2.44
890 891 5.584253 TTTCCATCTGTCCGTTTCAAAAA 57.416 34.783 0.00 0.00 0.00 1.94
935 936 2.760650 AGACTCATACGTGGCTCATGAA 59.239 45.455 0.00 0.00 0.00 2.57
937 938 2.159043 ACTCATACGTGGCTCATGAAGG 60.159 50.000 0.00 0.00 0.00 3.46
961 962 4.760530 TGATAAGTCCACTCTCAATGGG 57.239 45.455 0.00 0.00 37.85 4.00
962 963 4.361783 TGATAAGTCCACTCTCAATGGGA 58.638 43.478 0.00 0.00 37.85 4.37
963 964 4.406972 TGATAAGTCCACTCTCAATGGGAG 59.593 45.833 8.88 8.88 45.49 4.30
1004 1007 4.019860 AGGAACTTAGAAGCTCTGAATGCA 60.020 41.667 0.00 0.00 27.25 3.96
1013 1016 1.354337 CTCTGAATGCACGGACACGG 61.354 60.000 0.00 0.00 46.48 4.94
1084 1094 2.125912 CCACCGTGCTCTTCCTCG 60.126 66.667 0.00 0.00 0.00 4.63
1991 2126 7.619964 TCCCCGTTATTCAGTAAAAGAATTC 57.380 36.000 0.00 0.00 37.02 2.17
2566 3004 0.322546 GCCTCGGGTTGAAGGTGATT 60.323 55.000 0.00 0.00 0.00 2.57
2730 3168 1.066303 CCTCGATCACCTCTACACAGC 59.934 57.143 0.00 0.00 0.00 4.40
2738 3176 0.103208 CCTCTACACAGCGGGTCATC 59.897 60.000 0.00 0.00 0.00 2.92
2739 3177 0.248661 CTCTACACAGCGGGTCATCG 60.249 60.000 0.00 0.00 0.00 3.84
2740 3178 0.678684 TCTACACAGCGGGTCATCGA 60.679 55.000 0.00 0.00 0.00 3.59
2741 3179 0.172578 CTACACAGCGGGTCATCGAA 59.827 55.000 0.00 0.00 0.00 3.71
2742 3180 0.108992 TACACAGCGGGTCATCGAAC 60.109 55.000 0.00 0.00 0.00 3.95
2743 3181 2.100631 CACAGCGGGTCATCGAACC 61.101 63.158 0.00 0.00 35.78 3.62
2753 3191 4.138487 GGTCATCGAACCCAATAAGAGT 57.862 45.455 0.00 0.00 32.82 3.24
2754 3192 4.514401 GGTCATCGAACCCAATAAGAGTT 58.486 43.478 0.00 0.00 32.82 3.01
2755 3193 4.332819 GGTCATCGAACCCAATAAGAGTTG 59.667 45.833 0.00 0.00 32.82 3.16
2756 3194 3.938963 TCATCGAACCCAATAAGAGTTGC 59.061 43.478 0.00 0.00 0.00 4.17
2757 3195 2.343101 TCGAACCCAATAAGAGTTGCG 58.657 47.619 0.00 0.00 0.00 4.85
2758 3196 2.073816 CGAACCCAATAAGAGTTGCGT 58.926 47.619 0.00 0.00 0.00 5.24
2759 3197 2.159707 CGAACCCAATAAGAGTTGCGTG 60.160 50.000 0.00 0.00 0.00 5.34
2760 3198 2.851263 ACCCAATAAGAGTTGCGTGA 57.149 45.000 0.00 0.00 0.00 4.35
2761 3199 3.134574 ACCCAATAAGAGTTGCGTGAA 57.865 42.857 0.00 0.00 0.00 3.18
2762 3200 3.686016 ACCCAATAAGAGTTGCGTGAAT 58.314 40.909 0.00 0.00 0.00 2.57
2763 3201 3.440173 ACCCAATAAGAGTTGCGTGAATG 59.560 43.478 0.00 0.00 0.00 2.67
2764 3202 3.181497 CCCAATAAGAGTTGCGTGAATGG 60.181 47.826 0.00 0.00 0.00 3.16
2765 3203 3.429085 CAATAAGAGTTGCGTGAATGGC 58.571 45.455 0.00 0.00 0.00 4.40
2766 3204 1.075542 TAAGAGTTGCGTGAATGGCG 58.924 50.000 0.00 0.00 0.00 5.69
2773 3211 3.197790 CGTGAATGGCGCCTCCTG 61.198 66.667 29.70 8.85 35.26 3.86
2774 3212 2.825836 GTGAATGGCGCCTCCTGG 60.826 66.667 29.70 0.00 35.26 4.45
2792 3230 4.483683 CGCGTGCCACGTCGAATG 62.484 66.667 22.92 3.48 44.73 2.67
2793 3231 4.794241 GCGTGCCACGTCGAATGC 62.794 66.667 19.57 0.00 44.73 3.56
2794 3232 4.147322 CGTGCCACGTCGAATGCC 62.147 66.667 9.53 0.00 36.74 4.40
2795 3233 2.742372 GTGCCACGTCGAATGCCT 60.742 61.111 0.00 0.00 0.00 4.75
2796 3234 2.741985 TGCCACGTCGAATGCCTG 60.742 61.111 0.00 0.00 0.00 4.85
2797 3235 3.499737 GCCACGTCGAATGCCTGG 61.500 66.667 0.00 0.00 0.00 4.45
2798 3236 2.819595 CCACGTCGAATGCCTGGG 60.820 66.667 0.00 0.00 0.00 4.45
2799 3237 2.047274 CACGTCGAATGCCTGGGT 60.047 61.111 0.00 0.00 0.00 4.51
2800 3238 1.671054 CACGTCGAATGCCTGGGTT 60.671 57.895 0.00 0.00 0.00 4.11
2801 3239 0.390603 CACGTCGAATGCCTGGGTTA 60.391 55.000 0.00 0.00 0.00 2.85
2802 3240 0.390735 ACGTCGAATGCCTGGGTTAC 60.391 55.000 0.00 0.00 0.00 2.50
2803 3241 0.108329 CGTCGAATGCCTGGGTTACT 60.108 55.000 0.00 0.00 0.00 2.24
2804 3242 1.653151 GTCGAATGCCTGGGTTACTC 58.347 55.000 0.00 0.00 0.00 2.59
2805 3243 1.207329 GTCGAATGCCTGGGTTACTCT 59.793 52.381 0.00 0.00 0.00 3.24
2806 3244 1.480954 TCGAATGCCTGGGTTACTCTC 59.519 52.381 0.00 0.00 0.00 3.20
2807 3245 1.207089 CGAATGCCTGGGTTACTCTCA 59.793 52.381 0.00 0.00 0.00 3.27
2808 3246 2.633488 GAATGCCTGGGTTACTCTCAC 58.367 52.381 0.00 0.00 0.00 3.51
2809 3247 1.656587 ATGCCTGGGTTACTCTCACA 58.343 50.000 0.00 0.00 0.00 3.58
2810 3248 1.429930 TGCCTGGGTTACTCTCACAA 58.570 50.000 0.00 0.00 0.00 3.33
2811 3249 1.771854 TGCCTGGGTTACTCTCACAAA 59.228 47.619 0.00 0.00 0.00 2.83
2812 3250 2.173782 TGCCTGGGTTACTCTCACAAAA 59.826 45.455 0.00 0.00 0.00 2.44
2813 3251 3.219281 GCCTGGGTTACTCTCACAAAAA 58.781 45.455 0.00 0.00 0.00 1.94
2837 3275 1.342474 TGTCTGGGTTGGCCAGAAAAA 60.342 47.619 5.11 0.00 44.45 1.94
2847 3285 4.882842 TGGCCAGAAAAATAAAAGGGAC 57.117 40.909 0.00 0.00 0.00 4.46
2876 3314 3.450817 AGTGGGGAAAAGTGGAAAAGTTG 59.549 43.478 0.00 0.00 0.00 3.16
2879 3317 3.490249 GGGGAAAAGTGGAAAAGTTGTCG 60.490 47.826 0.00 0.00 0.00 4.35
2881 3319 4.348656 GGAAAAGTGGAAAAGTTGTCGAC 58.651 43.478 9.11 9.11 0.00 4.20
2882 3320 4.348656 GAAAAGTGGAAAAGTTGTCGACC 58.651 43.478 14.12 0.00 0.00 4.79
2898 3336 1.152096 ACCGAAACCCTCTCACCCT 60.152 57.895 0.00 0.00 0.00 4.34
2899 3337 1.192803 ACCGAAACCCTCTCACCCTC 61.193 60.000 0.00 0.00 0.00 4.30
2900 3338 1.192146 CCGAAACCCTCTCACCCTCA 61.192 60.000 0.00 0.00 0.00 3.86
2901 3339 0.037232 CGAAACCCTCTCACCCTCAC 60.037 60.000 0.00 0.00 0.00 3.51
2902 3340 1.353091 GAAACCCTCTCACCCTCACT 58.647 55.000 0.00 0.00 0.00 3.41
2942 3380 4.851214 AGCGCCTCCTCCTCCCTC 62.851 72.222 2.29 0.00 0.00 4.30
2943 3381 4.851214 GCGCCTCCTCCTCCCTCT 62.851 72.222 0.00 0.00 0.00 3.69
2944 3382 2.520741 CGCCTCCTCCTCCCTCTC 60.521 72.222 0.00 0.00 0.00 3.20
2946 3384 3.015332 GCCTCCTCCTCCCTCTCCA 62.015 68.421 0.00 0.00 0.00 3.86
2948 3386 0.689412 CCTCCTCCTCCCTCTCCAAC 60.689 65.000 0.00 0.00 0.00 3.77
2949 3387 1.000486 TCCTCCTCCCTCTCCAACG 60.000 63.158 0.00 0.00 0.00 4.10
2950 3388 2.726351 CCTCCTCCCTCTCCAACGC 61.726 68.421 0.00 0.00 0.00 4.84
2951 3389 2.683933 TCCTCCCTCTCCAACGCC 60.684 66.667 0.00 0.00 0.00 5.68
2952 3390 4.148825 CCTCCCTCTCCAACGCCG 62.149 72.222 0.00 0.00 0.00 6.46
2953 3391 4.821589 CTCCCTCTCCAACGCCGC 62.822 72.222 0.00 0.00 0.00 6.53
2963 3403 2.667199 AACGCCGCACCCTTGTAC 60.667 61.111 0.00 0.00 0.00 2.90
2966 3406 3.419759 GCCGCACCCTTGTACGTG 61.420 66.667 0.00 0.00 28.96 4.49
3008 3453 1.311403 CTCCTCCTCCTACCTGCCA 59.689 63.158 0.00 0.00 0.00 4.92
3050 3496 2.140792 CCCAGATACACCCTCCCCG 61.141 68.421 0.00 0.00 0.00 5.73
3051 3497 1.075525 CCAGATACACCCTCCCCGA 60.076 63.158 0.00 0.00 0.00 5.14
3109 3557 3.129502 CATCACCACCAGCCGCAG 61.130 66.667 0.00 0.00 0.00 5.18
3232 3680 4.760047 GCGCCGGGAGCTTCAAGA 62.760 66.667 15.98 0.00 40.39 3.02
3243 3691 3.879892 GGAGCTTCAAGAAGTTCAACACT 59.120 43.478 22.39 6.36 46.32 3.55
3265 3713 1.416401 ACAACATCCGTGACACCTTCT 59.584 47.619 0.00 0.00 0.00 2.85
3284 3732 0.041684 TGTCTCCTGCTCCAGATGGA 59.958 55.000 0.79 0.79 43.08 3.41
3303 3751 2.699954 GACAATGTCCTCATGTTCGGT 58.300 47.619 1.10 0.00 34.19 4.69
3330 3779 1.039068 TCCCGTCGTCAAGGTACAAA 58.961 50.000 0.00 0.00 0.00 2.83
3348 3797 3.443681 ACAAACCTATTGCCCAAATCGAG 59.556 43.478 0.00 0.00 0.00 4.04
3362 3811 6.183360 GCCCAAATCGAGTTGGTCATTTTATA 60.183 38.462 34.90 0.00 45.72 0.98
3403 3852 2.954989 TGCTCCTTGTTGTTTGCACATA 59.045 40.909 0.00 0.00 31.06 2.29
3404 3853 3.004629 TGCTCCTTGTTGTTTGCACATAG 59.995 43.478 0.00 0.00 31.06 2.23
3405 3854 3.568538 CTCCTTGTTGTTTGCACATAGC 58.431 45.455 0.00 0.00 45.96 2.97
3442 3922 0.034896 GGCCAGTTTGAGAAGGACGA 59.965 55.000 0.00 0.00 0.00 4.20
3485 3965 1.359848 GAGTCAACGTCAATGGCGAT 58.640 50.000 16.16 0.00 0.00 4.58
3501 3981 1.866237 GATGCGTTCGACCTGCAAA 59.134 52.632 9.17 0.00 42.65 3.68
3527 4007 1.408702 AGCAGAATTTTGTTGCGGTGT 59.591 42.857 0.00 0.00 42.47 4.16
3528 4008 1.522258 GCAGAATTTTGTTGCGGTGTG 59.478 47.619 0.00 0.00 0.00 3.82
3530 4010 3.186119 CAGAATTTTGTTGCGGTGTGTT 58.814 40.909 0.00 0.00 0.00 3.32
3531 4011 3.000122 CAGAATTTTGTTGCGGTGTGTTG 60.000 43.478 0.00 0.00 0.00 3.33
3532 4012 2.663826 ATTTTGTTGCGGTGTGTTGT 57.336 40.000 0.00 0.00 0.00 3.32
3533 4013 1.702886 TTTTGTTGCGGTGTGTTGTG 58.297 45.000 0.00 0.00 0.00 3.33
3542 4022 0.806241 GGTGTGTTGTGGTCGTTGTT 59.194 50.000 0.00 0.00 0.00 2.83
3576 4056 2.228822 CCCCTGTTGAATTTCTTCCACG 59.771 50.000 0.00 0.00 31.33 4.94
3583 4063 6.464222 TGTTGAATTTCTTCCACGTATCTCT 58.536 36.000 0.00 0.00 31.33 3.10
3616 4096 1.098050 GCAAGTGATAGGTTGCTGGG 58.902 55.000 0.00 0.00 44.68 4.45
3620 4100 3.525800 AGTGATAGGTTGCTGGGTTTT 57.474 42.857 0.00 0.00 0.00 2.43
3621 4101 3.844640 AGTGATAGGTTGCTGGGTTTTT 58.155 40.909 0.00 0.00 0.00 1.94
3658 4138 8.859517 GCATACGCCCAACTTTATAAATAAAA 57.140 30.769 0.00 0.00 32.39 1.52
3659 4139 8.748582 GCATACGCCCAACTTTATAAATAAAAC 58.251 33.333 0.00 0.00 32.39 2.43
3660 4140 9.240159 CATACGCCCAACTTTATAAATAAAACC 57.760 33.333 0.00 0.00 32.39 3.27
3661 4141 7.229581 ACGCCCAACTTTATAAATAAAACCA 57.770 32.000 0.00 0.00 32.39 3.67
3662 4142 7.668492 ACGCCCAACTTTATAAATAAAACCAA 58.332 30.769 0.00 0.00 32.39 3.67
3663 4143 8.148999 ACGCCCAACTTTATAAATAAAACCAAA 58.851 29.630 0.00 0.00 32.39 3.28
3664 4144 8.989980 CGCCCAACTTTATAAATAAAACCAAAA 58.010 29.630 0.00 0.00 32.39 2.44
3670 4150 9.719355 ACTTTATAAATAAAACCAAAAGGCAGG 57.281 29.630 0.00 0.00 32.39 4.85
3671 4151 9.719355 CTTTATAAATAAAACCAAAAGGCAGGT 57.281 29.630 0.00 0.00 40.61 4.00
3674 4154 4.801330 ATAAAACCAAAAGGCAGGTAGC 57.199 40.909 0.00 0.00 44.65 3.58
3687 4167 4.516092 GCAGGTAGCAATAACAACGTAG 57.484 45.455 0.00 0.00 44.79 3.51
3688 4168 3.308866 GCAGGTAGCAATAACAACGTAGG 59.691 47.826 0.00 0.00 44.79 3.18
3689 4169 4.751060 CAGGTAGCAATAACAACGTAGGA 58.249 43.478 0.00 0.00 0.00 2.94
3690 4170 5.172934 CAGGTAGCAATAACAACGTAGGAA 58.827 41.667 0.00 0.00 0.00 3.36
3691 4171 5.640357 CAGGTAGCAATAACAACGTAGGAAA 59.360 40.000 0.00 0.00 0.00 3.13
3692 4172 5.873164 AGGTAGCAATAACAACGTAGGAAAG 59.127 40.000 0.00 0.00 0.00 2.62
3693 4173 5.640783 GGTAGCAATAACAACGTAGGAAAGT 59.359 40.000 0.00 0.00 0.00 2.66
3694 4174 6.813152 GGTAGCAATAACAACGTAGGAAAGTA 59.187 38.462 0.00 0.00 0.00 2.24
3695 4175 7.493645 GGTAGCAATAACAACGTAGGAAAGTAT 59.506 37.037 0.00 0.00 0.00 2.12
3696 4176 7.535489 AGCAATAACAACGTAGGAAAGTATC 57.465 36.000 0.00 0.00 0.00 2.24
3697 4177 7.101054 AGCAATAACAACGTAGGAAAGTATCA 58.899 34.615 0.00 0.00 0.00 2.15
3698 4178 7.604927 AGCAATAACAACGTAGGAAAGTATCAA 59.395 33.333 0.00 0.00 0.00 2.57
3699 4179 8.231837 GCAATAACAACGTAGGAAAGTATCAAA 58.768 33.333 0.00 0.00 0.00 2.69
3700 4180 9.537848 CAATAACAACGTAGGAAAGTATCAAAC 57.462 33.333 0.00 0.00 0.00 2.93
3701 4181 8.836268 ATAACAACGTAGGAAAGTATCAAACA 57.164 30.769 0.00 0.00 0.00 2.83
3702 4182 6.535274 ACAACGTAGGAAAGTATCAAACAC 57.465 37.500 0.00 0.00 0.00 3.32
3703 4183 5.176223 ACAACGTAGGAAAGTATCAAACACG 59.824 40.000 0.00 0.00 0.00 4.49
3704 4184 3.676646 ACGTAGGAAAGTATCAAACACGC 59.323 43.478 0.00 0.00 0.00 5.34
3705 4185 3.061697 CGTAGGAAAGTATCAAACACGCC 59.938 47.826 0.00 0.00 0.00 5.68
3706 4186 3.134574 AGGAAAGTATCAAACACGCCA 57.865 42.857 0.00 0.00 0.00 5.69
3707 4187 3.482436 AGGAAAGTATCAAACACGCCAA 58.518 40.909 0.00 0.00 0.00 4.52
3708 4188 3.502211 AGGAAAGTATCAAACACGCCAAG 59.498 43.478 0.00 0.00 0.00 3.61
3709 4189 2.989422 AAGTATCAAACACGCCAAGC 57.011 45.000 0.00 0.00 0.00 4.01
3710 4190 1.165270 AGTATCAAACACGCCAAGCC 58.835 50.000 0.00 0.00 0.00 4.35
3711 4191 0.170339 GTATCAAACACGCCAAGCCC 59.830 55.000 0.00 0.00 0.00 5.19
3712 4192 0.963355 TATCAAACACGCCAAGCCCC 60.963 55.000 0.00 0.00 0.00 5.80
3713 4193 4.341502 CAAACACGCCAAGCCCCG 62.342 66.667 0.00 0.00 0.00 5.73
3714 4194 4.572571 AAACACGCCAAGCCCCGA 62.573 61.111 0.00 0.00 0.00 5.14
3720 4200 4.785453 GCCAAGCCCCGACAGAGG 62.785 72.222 0.00 0.00 0.00 3.69
3727 4207 3.775654 CCCGACAGAGGGCAGACC 61.776 72.222 0.00 0.00 45.72 3.85
3736 4216 3.388841 GGGCAGACCTCCGAAAGA 58.611 61.111 0.00 0.00 35.85 2.52
3737 4217 1.677552 GGGCAGACCTCCGAAAGAA 59.322 57.895 0.00 0.00 35.85 2.52
3738 4218 0.036306 GGGCAGACCTCCGAAAGAAA 59.964 55.000 0.00 0.00 35.85 2.52
3739 4219 1.544759 GGGCAGACCTCCGAAAGAAAA 60.545 52.381 0.00 0.00 35.85 2.29
3740 4220 2.227194 GGCAGACCTCCGAAAGAAAAA 58.773 47.619 0.00 0.00 0.00 1.94
3741 4221 2.226674 GGCAGACCTCCGAAAGAAAAAG 59.773 50.000 0.00 0.00 0.00 2.27
3742 4222 2.879026 GCAGACCTCCGAAAGAAAAAGT 59.121 45.455 0.00 0.00 0.00 2.66
3743 4223 3.058846 GCAGACCTCCGAAAGAAAAAGTC 60.059 47.826 0.00 0.00 0.00 3.01
3744 4224 4.127171 CAGACCTCCGAAAGAAAAAGTCA 58.873 43.478 0.00 0.00 0.00 3.41
3745 4225 4.212214 CAGACCTCCGAAAGAAAAAGTCAG 59.788 45.833 0.00 0.00 0.00 3.51
3746 4226 3.477530 ACCTCCGAAAGAAAAAGTCAGG 58.522 45.455 0.00 0.00 0.00 3.86
3747 4227 3.118000 ACCTCCGAAAGAAAAAGTCAGGT 60.118 43.478 0.00 0.00 0.00 4.00
3748 4228 4.102054 ACCTCCGAAAGAAAAAGTCAGGTA 59.898 41.667 0.00 0.00 0.00 3.08
3749 4229 4.451435 CCTCCGAAAGAAAAAGTCAGGTAC 59.549 45.833 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.209261 TCCTCGGCATGTAGAATTGCA 59.791 47.619 0.00 0.00 40.66 4.08
1 2 1.869767 CTCCTCGGCATGTAGAATTGC 59.130 52.381 0.00 0.00 38.14 3.56
2 3 2.158900 ACCTCCTCGGCATGTAGAATTG 60.159 50.000 0.00 0.00 35.61 2.32
3 4 2.119495 ACCTCCTCGGCATGTAGAATT 58.881 47.619 0.00 0.00 35.61 2.17
4 5 1.794714 ACCTCCTCGGCATGTAGAAT 58.205 50.000 0.00 0.00 35.61 2.40
5 6 1.207089 CAACCTCCTCGGCATGTAGAA 59.793 52.381 0.00 0.00 35.61 2.10
6 7 0.824109 CAACCTCCTCGGCATGTAGA 59.176 55.000 0.00 0.00 35.61 2.59
7 8 0.537188 ACAACCTCCTCGGCATGTAG 59.463 55.000 0.00 0.00 35.16 2.74
8 9 1.754803 CTACAACCTCCTCGGCATGTA 59.245 52.381 0.00 0.00 37.35 2.29
9 10 0.537188 CTACAACCTCCTCGGCATGT 59.463 55.000 0.00 0.00 38.97 3.21
10 11 0.824109 TCTACAACCTCCTCGGCATG 59.176 55.000 0.00 0.00 35.61 4.06
11 12 1.207329 GTTCTACAACCTCCTCGGCAT 59.793 52.381 0.00 0.00 35.61 4.40
12 13 0.606604 GTTCTACAACCTCCTCGGCA 59.393 55.000 0.00 0.00 35.61 5.69
13 14 3.437746 GTTCTACAACCTCCTCGGC 57.562 57.895 0.00 0.00 35.61 5.54
22 23 3.031812 CGACTATACGCGGTTCTACAAC 58.968 50.000 12.47 0.00 0.00 3.32
23 24 3.323729 CGACTATACGCGGTTCTACAA 57.676 47.619 12.47 0.00 0.00 2.41
34 35 2.426425 GACGGCGGCGACTATACG 60.426 66.667 38.93 6.53 0.00 3.06
35 36 0.728466 GATGACGGCGGCGACTATAC 60.728 60.000 38.93 18.74 0.00 1.47
36 37 1.167781 TGATGACGGCGGCGACTATA 61.168 55.000 38.93 16.61 0.00 1.31
37 38 1.806461 ATGATGACGGCGGCGACTAT 61.806 55.000 38.93 25.82 0.00 2.12
38 39 2.402282 GATGATGACGGCGGCGACTA 62.402 60.000 38.93 22.36 0.00 2.59
39 40 3.774959 GATGATGACGGCGGCGACT 62.775 63.158 38.93 20.81 0.00 4.18
40 41 3.330853 GATGATGACGGCGGCGAC 61.331 66.667 38.93 31.68 0.00 5.19
41 42 4.923710 CGATGATGACGGCGGCGA 62.924 66.667 38.93 17.81 0.00 5.54
43 44 3.330853 GACGATGATGACGGCGGC 61.331 66.667 13.24 9.67 34.93 6.53
44 45 1.278172 GATGACGATGATGACGGCGG 61.278 60.000 13.24 0.00 42.10 6.13
45 46 1.600284 CGATGACGATGATGACGGCG 61.600 60.000 4.80 4.80 42.10 6.46
46 47 0.595053 ACGATGACGATGATGACGGC 60.595 55.000 0.00 0.00 42.66 5.68
47 48 1.399572 GACGATGACGATGATGACGG 58.600 55.000 0.00 0.00 42.66 4.79
48 49 1.037998 CGACGATGACGATGATGACG 58.962 55.000 0.00 0.00 42.66 4.35
49 50 2.037649 GACGACGATGACGATGATGAC 58.962 52.381 0.00 0.00 42.66 3.06
50 51 1.332904 CGACGACGATGACGATGATGA 60.333 52.381 0.00 0.00 42.66 2.92
51 52 1.037998 CGACGACGATGACGATGATG 58.962 55.000 0.00 0.00 42.66 3.07
52 53 0.656259 ACGACGACGATGACGATGAT 59.344 50.000 15.32 0.00 42.66 2.45
53 54 0.445043 AACGACGACGATGACGATGA 59.555 50.000 15.32 0.00 42.66 2.92
54 55 0.561593 CAACGACGACGATGACGATG 59.438 55.000 15.32 3.44 43.20 3.84
55 56 1.132199 GCAACGACGACGATGACGAT 61.132 55.000 20.02 0.00 43.20 3.73
56 57 1.794785 GCAACGACGACGATGACGA 60.795 57.895 20.02 0.00 43.20 4.20
57 58 2.681666 GCAACGACGACGATGACG 59.318 61.111 20.02 4.49 43.20 4.35
58 59 3.070060 GGCAACGACGACGATGAC 58.930 61.111 20.02 14.34 43.20 3.06
91 92 3.368571 GGTTGCAGCAGGGACAGC 61.369 66.667 2.05 0.00 42.86 4.40
92 93 2.674380 GGGTTGCAGCAGGGACAG 60.674 66.667 2.05 0.00 0.00 3.51
93 94 3.177884 AGGGTTGCAGCAGGGACA 61.178 61.111 2.05 0.00 0.00 4.02
94 95 2.360475 GAGGGTTGCAGCAGGGAC 60.360 66.667 2.05 0.00 0.00 4.46
95 96 3.650950 GGAGGGTTGCAGCAGGGA 61.651 66.667 2.05 0.00 0.00 4.20
96 97 4.748144 GGGAGGGTTGCAGCAGGG 62.748 72.222 2.05 0.00 0.00 4.45
97 98 4.748144 GGGGAGGGTTGCAGCAGG 62.748 72.222 2.05 0.00 0.00 4.85
126 127 3.296709 CTCCGGACTGTCCAACCCG 62.297 68.421 25.42 12.26 41.47 5.28
127 128 2.663196 CTCCGGACTGTCCAACCC 59.337 66.667 25.42 0.00 35.91 4.11
128 129 2.663196 CCTCCGGACTGTCCAACC 59.337 66.667 25.42 0.22 35.91 3.77
129 130 2.047179 GCCTCCGGACTGTCCAAC 60.047 66.667 25.42 6.71 35.91 3.77
130 131 3.691342 CGCCTCCGGACTGTCCAA 61.691 66.667 25.42 12.44 35.91 3.53
131 132 4.988716 ACGCCTCCGGACTGTCCA 62.989 66.667 25.42 7.15 35.91 4.02
132 133 4.131088 GACGCCTCCGGACTGTCC 62.131 72.222 16.99 16.99 39.22 4.02
133 134 4.131088 GGACGCCTCCGGACTGTC 62.131 72.222 14.63 14.63 39.22 3.51
134 135 4.680537 AGGACGCCTCCGGACTGT 62.681 66.667 0.00 0.00 42.22 3.55
135 136 3.827898 GAGGACGCCTCCGGACTG 61.828 72.222 0.00 0.00 44.36 3.51
156 157 4.148825 ATCCTCGACAGCCACGGC 62.149 66.667 0.00 0.00 42.33 5.68
157 158 2.105128 GATCCTCGACAGCCACGG 59.895 66.667 0.00 0.00 0.00 4.94
158 159 1.517257 GTGATCCTCGACAGCCACG 60.517 63.158 0.00 0.00 0.00 4.94
159 160 1.517257 CGTGATCCTCGACAGCCAC 60.517 63.158 1.92 0.00 0.00 5.01
160 161 1.677633 TCGTGATCCTCGACAGCCA 60.678 57.895 6.10 0.00 32.30 4.75
161 162 3.197614 TCGTGATCCTCGACAGCC 58.802 61.111 6.10 0.00 32.30 4.85
166 167 3.872728 CGGCGTCGTGATCCTCGA 61.873 66.667 0.00 6.10 34.91 4.04
204 205 4.770874 GAGGTAGCCGCCCGCAAA 62.771 66.667 0.00 0.00 41.38 3.68
210 211 3.541713 CTGGAGGAGGTAGCCGCC 61.542 72.222 0.00 0.00 46.86 6.13
211 212 3.541713 CCTGGAGGAGGTAGCCGC 61.542 72.222 0.00 0.00 37.02 6.53
212 213 2.840102 CCCTGGAGGAGGTAGCCG 60.840 72.222 0.00 0.00 40.87 5.52
213 214 3.164977 GCCCTGGAGGAGGTAGCC 61.165 72.222 0.00 0.00 40.87 3.93
214 215 3.164977 GGCCCTGGAGGAGGTAGC 61.165 72.222 0.00 0.00 40.87 3.58
215 216 2.446802 GGGCCCTGGAGGAGGTAG 60.447 72.222 17.04 0.00 40.87 3.18
216 217 4.475444 CGGGCCCTGGAGGAGGTA 62.475 72.222 22.43 0.00 40.87 3.08
235 236 3.451556 ATGAGATGGTCCGGCAGCG 62.452 63.158 0.00 0.00 0.00 5.18
236 237 1.596477 GATGAGATGGTCCGGCAGC 60.596 63.158 0.00 0.00 0.00 5.25
237 238 1.300465 CGATGAGATGGTCCGGCAG 60.300 63.158 0.00 0.00 0.00 4.85
238 239 2.814604 CGATGAGATGGTCCGGCA 59.185 61.111 0.00 0.00 0.00 5.69
239 240 2.663188 GCGATGAGATGGTCCGGC 60.663 66.667 0.00 0.00 0.00 6.13
240 241 2.355126 CGCGATGAGATGGTCCGG 60.355 66.667 0.00 0.00 0.00 5.14
241 242 2.355126 CCGCGATGAGATGGTCCG 60.355 66.667 8.23 0.00 0.00 4.79
242 243 1.006805 CTCCGCGATGAGATGGTCC 60.007 63.158 8.23 0.00 34.11 4.46
243 244 1.006805 CCTCCGCGATGAGATGGTC 60.007 63.158 8.23 0.00 34.11 4.02
244 245 0.467474 TACCTCCGCGATGAGATGGT 60.467 55.000 8.23 8.36 34.11 3.55
245 246 0.242286 CTACCTCCGCGATGAGATGG 59.758 60.000 8.23 2.52 34.11 3.51
246 247 0.955178 ACTACCTCCGCGATGAGATG 59.045 55.000 8.23 2.99 34.11 2.90
247 248 1.338337 CAACTACCTCCGCGATGAGAT 59.662 52.381 8.23 0.00 34.11 2.75
248 249 0.738975 CAACTACCTCCGCGATGAGA 59.261 55.000 8.23 0.00 34.11 3.27
249 250 0.456221 ACAACTACCTCCGCGATGAG 59.544 55.000 8.23 6.53 0.00 2.90
250 251 0.454600 GACAACTACCTCCGCGATGA 59.545 55.000 8.23 0.00 0.00 2.92
251 252 0.527817 GGACAACTACCTCCGCGATG 60.528 60.000 8.23 0.00 0.00 3.84
252 253 1.673808 GGGACAACTACCTCCGCGAT 61.674 60.000 8.23 0.00 0.00 4.58
253 254 2.345760 GGGACAACTACCTCCGCGA 61.346 63.158 8.23 0.00 0.00 5.87
254 255 2.183555 GGGACAACTACCTCCGCG 59.816 66.667 0.00 0.00 0.00 6.46
255 256 2.183555 CGGGACAACTACCTCCGC 59.816 66.667 0.00 0.00 34.17 5.54
256 257 2.183555 GCGGGACAACTACCTCCG 59.816 66.667 0.00 0.00 43.13 4.63
257 258 2.183555 CGCGGGACAACTACCTCC 59.816 66.667 0.00 0.00 0.00 4.30
258 259 2.508663 GCGCGGGACAACTACCTC 60.509 66.667 8.83 0.00 0.00 3.85
259 260 4.078516 GGCGCGGGACAACTACCT 62.079 66.667 8.83 0.00 0.00 3.08
261 262 4.382320 TGGGCGCGGGACAACTAC 62.382 66.667 8.83 0.00 0.00 2.73
262 263 4.382320 GTGGGCGCGGGACAACTA 62.382 66.667 8.83 0.00 0.00 2.24
267 268 4.157120 ATACAGTGGGCGCGGGAC 62.157 66.667 8.83 0.00 0.00 4.46
268 269 4.155733 CATACAGTGGGCGCGGGA 62.156 66.667 8.83 0.00 0.00 5.14
277 278 0.103208 GACGAGGAGGCCATACAGTG 59.897 60.000 5.01 0.00 0.00 3.66
278 279 1.384989 CGACGAGGAGGCCATACAGT 61.385 60.000 5.01 0.00 0.00 3.55
279 280 1.360551 CGACGAGGAGGCCATACAG 59.639 63.158 5.01 0.00 0.00 2.74
280 281 2.125326 CCGACGAGGAGGCCATACA 61.125 63.158 5.01 0.00 45.00 2.29
281 282 1.826921 TCCGACGAGGAGGCCATAC 60.827 63.158 5.01 0.00 45.98 2.39
282 283 2.599032 TCCGACGAGGAGGCCATA 59.401 61.111 5.01 0.00 45.98 2.74
306 307 4.365505 GAGGAGATAGCCCGGCGC 62.366 72.222 0.00 0.00 37.98 6.53
307 308 4.044484 CGAGGAGATAGCCCGGCG 62.044 72.222 3.05 0.00 0.00 6.46
308 309 1.602888 TACGAGGAGATAGCCCGGC 60.603 63.158 0.00 0.00 0.00 6.13
309 310 0.250814 AGTACGAGGAGATAGCCCGG 60.251 60.000 0.00 0.00 0.00 5.73
310 311 1.158434 GAGTACGAGGAGATAGCCCG 58.842 60.000 0.00 0.00 0.00 6.13
311 312 2.156098 CAGAGTACGAGGAGATAGCCC 58.844 57.143 0.00 0.00 0.00 5.19
312 313 1.538075 GCAGAGTACGAGGAGATAGCC 59.462 57.143 0.00 0.00 0.00 3.93
313 314 1.195900 CGCAGAGTACGAGGAGATAGC 59.804 57.143 0.00 0.00 0.00 2.97
314 315 1.801771 CCGCAGAGTACGAGGAGATAG 59.198 57.143 0.00 0.00 0.00 2.08
315 316 1.542767 CCCGCAGAGTACGAGGAGATA 60.543 57.143 0.00 0.00 0.00 1.98
316 317 0.820074 CCCGCAGAGTACGAGGAGAT 60.820 60.000 0.00 0.00 0.00 2.75
317 318 1.451567 CCCGCAGAGTACGAGGAGA 60.452 63.158 0.00 0.00 0.00 3.71
318 319 2.482333 CCCCGCAGAGTACGAGGAG 61.482 68.421 0.00 0.00 28.33 3.69
319 320 2.439701 CCCCGCAGAGTACGAGGA 60.440 66.667 0.00 0.00 28.33 3.71
320 321 2.439701 TCCCCGCAGAGTACGAGG 60.440 66.667 0.00 0.00 0.00 4.63
321 322 2.482333 CCTCCCCGCAGAGTACGAG 61.482 68.421 0.00 0.00 31.53 4.18
322 323 2.439701 CCTCCCCGCAGAGTACGA 60.440 66.667 0.00 0.00 31.53 3.43
323 324 4.208686 GCCTCCCCGCAGAGTACG 62.209 72.222 0.06 0.00 31.53 3.67
324 325 3.851128 GGCCTCCCCGCAGAGTAC 61.851 72.222 0.00 0.00 31.53 2.73
593 594 3.192103 AAGCCGGAACCCAGGACAC 62.192 63.158 5.05 0.00 0.00 3.67
594 595 2.852075 AAGCCGGAACCCAGGACA 60.852 61.111 5.05 0.00 0.00 4.02
595 596 2.359975 CAAGCCGGAACCCAGGAC 60.360 66.667 5.05 0.00 0.00 3.85
596 597 2.528127 TCAAGCCGGAACCCAGGA 60.528 61.111 5.05 0.00 0.00 3.86
597 598 2.359975 GTCAAGCCGGAACCCAGG 60.360 66.667 5.05 0.00 0.00 4.45
598 599 2.742372 CGTCAAGCCGGAACCCAG 60.742 66.667 5.05 0.00 0.00 4.45
672 673 3.781770 GAGCTCATGGACGCCGAGG 62.782 68.421 9.40 0.00 0.00 4.63
673 674 2.279120 GAGCTCATGGACGCCGAG 60.279 66.667 9.40 0.00 0.00 4.63
674 675 3.838271 GGAGCTCATGGACGCCGA 61.838 66.667 17.19 0.00 0.00 5.54
675 676 4.899239 GGGAGCTCATGGACGCCG 62.899 72.222 17.19 0.00 0.00 6.46
676 677 3.785859 TGGGAGCTCATGGACGCC 61.786 66.667 17.19 6.00 0.00 5.68
677 678 2.512515 GTGGGAGCTCATGGACGC 60.513 66.667 17.19 2.91 0.00 5.19
678 679 2.202797 CGTGGGAGCTCATGGACG 60.203 66.667 17.19 13.10 0.00 4.79
679 680 1.153549 GACGTGGGAGCTCATGGAC 60.154 63.158 17.19 4.90 0.00 4.02
680 681 2.710902 CGACGTGGGAGCTCATGGA 61.711 63.158 17.19 0.00 0.00 3.41
681 682 2.202797 CGACGTGGGAGCTCATGG 60.203 66.667 17.19 3.91 0.00 3.66
682 683 2.202797 CCGACGTGGGAGCTCATG 60.203 66.667 17.19 4.46 0.00 3.07
683 684 4.148825 GCCGACGTGGGAGCTCAT 62.149 66.667 21.99 0.00 38.63 2.90
688 689 4.180946 CTCTCGCCGACGTGGGAG 62.181 72.222 21.99 17.90 41.18 4.30
689 690 4.710167 TCTCTCGCCGACGTGGGA 62.710 66.667 21.99 6.63 39.80 4.37
690 691 3.685214 CTTCTCTCGCCGACGTGGG 62.685 68.421 12.94 12.94 41.18 4.61
691 692 2.202492 CTTCTCTCGCCGACGTGG 60.202 66.667 0.00 0.00 41.18 4.94
692 693 2.202492 CCTTCTCTCGCCGACGTG 60.202 66.667 0.00 0.00 41.18 4.49
693 694 2.359602 TCCTTCTCTCGCCGACGT 60.360 61.111 0.00 0.00 41.18 4.34
694 695 2.100603 GTCCTTCTCTCGCCGACG 59.899 66.667 0.00 0.00 42.01 5.12
695 696 2.100603 CGTCCTTCTCTCGCCGAC 59.899 66.667 0.00 0.00 0.00 4.79
696 697 3.132139 CCGTCCTTCTCTCGCCGA 61.132 66.667 0.00 0.00 0.00 5.54
697 698 4.194720 CCCGTCCTTCTCTCGCCG 62.195 72.222 0.00 0.00 0.00 6.46
698 699 3.839432 CCCCGTCCTTCTCTCGCC 61.839 72.222 0.00 0.00 0.00 5.54
699 700 3.839432 CCCCCGTCCTTCTCTCGC 61.839 72.222 0.00 0.00 0.00 5.03
700 701 2.044252 TCCCCCGTCCTTCTCTCG 60.044 66.667 0.00 0.00 0.00 4.04
701 702 2.428085 GCTCCCCCGTCCTTCTCTC 61.428 68.421 0.00 0.00 0.00 3.20
702 703 2.364448 GCTCCCCCGTCCTTCTCT 60.364 66.667 0.00 0.00 0.00 3.10
703 704 3.839432 CGCTCCCCCGTCCTTCTC 61.839 72.222 0.00 0.00 0.00 2.87
713 714 4.828296 TCGAGTACCCCGCTCCCC 62.828 72.222 0.88 0.00 0.00 4.81
714 715 3.217743 CTCGAGTACCCCGCTCCC 61.218 72.222 3.62 0.00 0.00 4.30
715 716 3.902086 GCTCGAGTACCCCGCTCC 61.902 72.222 15.13 0.00 0.00 4.70
716 717 3.902086 GGCTCGAGTACCCCGCTC 61.902 72.222 15.13 0.00 0.00 5.03
717 718 4.444081 AGGCTCGAGTACCCCGCT 62.444 66.667 15.13 0.00 0.00 5.52
718 719 3.902086 GAGGCTCGAGTACCCCGC 61.902 72.222 15.13 4.51 0.00 6.13
719 720 3.584052 CGAGGCTCGAGTACCCCG 61.584 72.222 32.07 6.45 43.74 5.73
720 721 3.217743 CCGAGGCTCGAGTACCCC 61.218 72.222 36.47 6.49 43.74 4.95
721 722 3.902086 GCCGAGGCTCGAGTACCC 61.902 72.222 36.47 13.84 43.74 3.69
722 723 2.491022 ATGCCGAGGCTCGAGTACC 61.491 63.158 36.47 18.64 43.74 3.34
723 724 1.299468 CATGCCGAGGCTCGAGTAC 60.299 63.158 36.47 22.06 43.74 2.73
724 725 1.320344 AACATGCCGAGGCTCGAGTA 61.320 55.000 36.47 24.83 43.74 2.59
725 726 2.650116 AACATGCCGAGGCTCGAGT 61.650 57.895 36.47 24.24 43.74 4.18
726 727 2.169789 CAACATGCCGAGGCTCGAG 61.170 63.158 36.47 25.92 43.74 4.04
727 728 2.125552 CAACATGCCGAGGCTCGA 60.126 61.111 36.47 19.45 43.74 4.04
728 729 3.869272 GCAACATGCCGAGGCTCG 61.869 66.667 29.16 29.16 42.51 5.03
737 738 1.815421 ATCGAGGACGGCAACATGC 60.815 57.895 0.00 0.00 44.08 4.06
738 739 0.740868 ACATCGAGGACGGCAACATG 60.741 55.000 3.06 0.00 40.21 3.21
739 740 0.821517 TACATCGAGGACGGCAACAT 59.178 50.000 3.06 0.00 40.21 2.71
740 741 0.108992 GTACATCGAGGACGGCAACA 60.109 55.000 3.06 0.00 40.21 3.33
741 742 0.172803 AGTACATCGAGGACGGCAAC 59.827 55.000 3.06 0.00 40.21 4.17
742 743 0.454600 GAGTACATCGAGGACGGCAA 59.545 55.000 3.06 0.00 40.21 4.52
743 744 0.678684 TGAGTACATCGAGGACGGCA 60.679 55.000 3.06 0.00 40.21 5.69
744 745 0.669077 ATGAGTACATCGAGGACGGC 59.331 55.000 3.06 0.00 40.21 5.68
745 746 4.379603 GGATAATGAGTACATCGAGGACGG 60.380 50.000 3.06 0.00 40.21 4.79
746 747 4.379603 GGGATAATGAGTACATCGAGGACG 60.380 50.000 3.06 0.00 35.50 4.79
747 748 4.767928 AGGGATAATGAGTACATCGAGGAC 59.232 45.833 3.06 0.00 35.50 3.85
748 749 4.999310 AGGGATAATGAGTACATCGAGGA 58.001 43.478 3.06 0.00 35.50 3.71
749 750 5.730296 AAGGGATAATGAGTACATCGAGG 57.270 43.478 0.00 0.00 35.50 4.63
822 823 4.454504 AGCCACGAGTCATAACGAATTTTT 59.545 37.500 0.00 0.00 0.00 1.94
823 824 4.000988 AGCCACGAGTCATAACGAATTTT 58.999 39.130 0.00 0.00 0.00 1.82
824 825 3.596214 AGCCACGAGTCATAACGAATTT 58.404 40.909 0.00 0.00 0.00 1.82
825 826 3.187700 GAGCCACGAGTCATAACGAATT 58.812 45.455 0.00 0.00 0.00 2.17
826 827 2.165641 TGAGCCACGAGTCATAACGAAT 59.834 45.455 0.00 0.00 0.00 3.34
827 828 1.542472 TGAGCCACGAGTCATAACGAA 59.458 47.619 0.00 0.00 0.00 3.85
828 829 1.135489 GTGAGCCACGAGTCATAACGA 60.135 52.381 0.00 0.00 0.00 3.85
829 830 1.269166 GTGAGCCACGAGTCATAACG 58.731 55.000 0.00 0.00 0.00 3.18
840 841 0.034337 TAACCAACCTCGTGAGCCAC 59.966 55.000 0.00 0.00 0.00 5.01
841 842 0.981183 ATAACCAACCTCGTGAGCCA 59.019 50.000 0.00 0.00 0.00 4.75
842 843 2.109425 AATAACCAACCTCGTGAGCC 57.891 50.000 0.00 0.00 0.00 4.70
843 844 5.353938 TGTATAATAACCAACCTCGTGAGC 58.646 41.667 0.00 0.00 0.00 4.26
844 845 8.433421 AATTGTATAATAACCAACCTCGTGAG 57.567 34.615 0.00 0.00 0.00 3.51
845 846 8.795842 AAATTGTATAATAACCAACCTCGTGA 57.204 30.769 0.00 0.00 0.00 4.35
846 847 8.126700 GGAAATTGTATAATAACCAACCTCGTG 58.873 37.037 3.81 0.00 0.00 4.35
847 848 7.830201 TGGAAATTGTATAATAACCAACCTCGT 59.170 33.333 7.46 0.00 32.56 4.18
848 849 8.215926 TGGAAATTGTATAATAACCAACCTCG 57.784 34.615 7.46 0.00 32.56 4.63
850 851 9.936329 AGATGGAAATTGTATAATAACCAACCT 57.064 29.630 11.89 9.97 36.20 3.50
851 852 9.965824 CAGATGGAAATTGTATAATAACCAACC 57.034 33.333 11.89 8.55 36.20 3.77
854 855 9.349713 GGACAGATGGAAATTGTATAATAACCA 57.650 33.333 10.81 10.81 36.65 3.67
855 856 8.504005 CGGACAGATGGAAATTGTATAATAACC 58.496 37.037 0.00 0.00 0.00 2.85
856 857 9.052759 ACGGACAGATGGAAATTGTATAATAAC 57.947 33.333 0.00 0.00 0.00 1.89
857 858 9.621629 AACGGACAGATGGAAATTGTATAATAA 57.378 29.630 0.00 0.00 0.00 1.40
858 859 9.621629 AAACGGACAGATGGAAATTGTATAATA 57.378 29.630 0.00 0.00 0.00 0.98
859 860 8.519799 AAACGGACAGATGGAAATTGTATAAT 57.480 30.769 0.00 0.00 0.00 1.28
860 861 7.608376 TGAAACGGACAGATGGAAATTGTATAA 59.392 33.333 0.00 0.00 0.00 0.98
861 862 7.106890 TGAAACGGACAGATGGAAATTGTATA 58.893 34.615 0.00 0.00 0.00 1.47
862 863 5.943416 TGAAACGGACAGATGGAAATTGTAT 59.057 36.000 0.00 0.00 0.00 2.29
863 864 5.309638 TGAAACGGACAGATGGAAATTGTA 58.690 37.500 0.00 0.00 0.00 2.41
864 865 4.141287 TGAAACGGACAGATGGAAATTGT 58.859 39.130 0.00 0.00 0.00 2.71
865 866 4.764679 TGAAACGGACAGATGGAAATTG 57.235 40.909 0.00 0.00 0.00 2.32
866 867 5.782893 TTTGAAACGGACAGATGGAAATT 57.217 34.783 0.00 0.00 0.00 1.82
867 868 5.782893 TTTTGAAACGGACAGATGGAAAT 57.217 34.783 0.00 0.00 0.00 2.17
868 869 5.584253 TTTTTGAAACGGACAGATGGAAA 57.416 34.783 0.00 0.00 0.00 3.13
892 893 9.911788 AGTCTTGACAGATGGAAATTGTATTAT 57.088 29.630 3.49 0.00 0.00 1.28
893 894 9.383519 GAGTCTTGACAGATGGAAATTGTATTA 57.616 33.333 3.49 0.00 0.00 0.98
894 895 7.884877 TGAGTCTTGACAGATGGAAATTGTATT 59.115 33.333 3.49 0.00 0.00 1.89
935 936 3.445008 TGAGAGTGGACTTATCAAGCCT 58.555 45.455 0.00 0.00 0.00 4.58
937 938 4.574013 CCATTGAGAGTGGACTTATCAAGC 59.426 45.833 11.66 0.00 39.12 4.01
986 987 2.606725 CCGTGCATTCAGAGCTTCTAAG 59.393 50.000 0.00 0.00 0.00 2.18
988 989 1.824852 TCCGTGCATTCAGAGCTTCTA 59.175 47.619 0.00 0.00 0.00 2.10
1004 1007 2.597805 AGAGTGAGCCGTGTCCGT 60.598 61.111 0.00 0.00 0.00 4.69
1012 1015 3.077617 GCTCCATTGAGAGTGAGCC 57.922 57.895 0.00 0.00 43.40 4.70
1452 1468 3.057526 CGCTCCGGATGTACTCATATGAA 60.058 47.826 3.57 0.00 34.06 2.57
1991 2126 3.914312 TCTGAAAAGCTCCTTGTACTCG 58.086 45.455 0.00 0.00 0.00 4.18
2738 3176 2.806288 CGCAACTCTTATTGGGTTCG 57.194 50.000 0.00 0.00 37.65 3.95
2742 3180 3.181497 CCATTCACGCAACTCTTATTGGG 60.181 47.826 1.47 1.47 45.42 4.12
2743 3181 3.731867 GCCATTCACGCAACTCTTATTGG 60.732 47.826 0.00 0.00 0.00 3.16
2744 3182 3.429085 GCCATTCACGCAACTCTTATTG 58.571 45.455 0.00 0.00 0.00 1.90
2745 3183 2.095853 CGCCATTCACGCAACTCTTATT 59.904 45.455 0.00 0.00 0.00 1.40
2746 3184 1.665679 CGCCATTCACGCAACTCTTAT 59.334 47.619 0.00 0.00 0.00 1.73
2747 3185 1.075542 CGCCATTCACGCAACTCTTA 58.924 50.000 0.00 0.00 0.00 2.10
2748 3186 1.868997 CGCCATTCACGCAACTCTT 59.131 52.632 0.00 0.00 0.00 2.85
2749 3187 3.566261 CGCCATTCACGCAACTCT 58.434 55.556 0.00 0.00 0.00 3.24
2756 3194 3.197790 CAGGAGGCGCCATTCACG 61.198 66.667 31.54 9.14 40.02 4.35
2757 3195 2.825836 CCAGGAGGCGCCATTCAC 60.826 66.667 31.54 13.42 40.02 3.18
2778 3216 2.742372 AGGCATTCGACGTGGCAC 60.742 61.111 20.89 7.79 43.86 5.01
2779 3217 2.741985 CAGGCATTCGACGTGGCA 60.742 61.111 20.89 0.00 43.86 4.92
2780 3218 3.499737 CCAGGCATTCGACGTGGC 61.500 66.667 13.73 13.73 41.96 5.01
2781 3219 2.819595 CCCAGGCATTCGACGTGG 60.820 66.667 0.00 6.33 41.64 4.94
2782 3220 0.390603 TAACCCAGGCATTCGACGTG 60.391 55.000 0.00 0.00 0.00 4.49
2783 3221 0.390735 GTAACCCAGGCATTCGACGT 60.391 55.000 0.00 0.00 0.00 4.34
2784 3222 0.108329 AGTAACCCAGGCATTCGACG 60.108 55.000 0.00 0.00 0.00 5.12
2785 3223 1.207329 AGAGTAACCCAGGCATTCGAC 59.793 52.381 0.00 0.00 0.00 4.20
2786 3224 1.480954 GAGAGTAACCCAGGCATTCGA 59.519 52.381 0.00 0.00 0.00 3.71
2787 3225 1.207089 TGAGAGTAACCCAGGCATTCG 59.793 52.381 0.00 0.00 0.00 3.34
2788 3226 2.027192 TGTGAGAGTAACCCAGGCATTC 60.027 50.000 0.00 0.00 0.00 2.67
2789 3227 1.985159 TGTGAGAGTAACCCAGGCATT 59.015 47.619 0.00 0.00 0.00 3.56
2790 3228 1.656587 TGTGAGAGTAACCCAGGCAT 58.343 50.000 0.00 0.00 0.00 4.40
2791 3229 1.429930 TTGTGAGAGTAACCCAGGCA 58.570 50.000 0.00 0.00 0.00 4.75
2792 3230 2.561478 TTTGTGAGAGTAACCCAGGC 57.439 50.000 0.00 0.00 0.00 4.85
2812 3250 1.799933 TGGCCAACCCAGACATTTTT 58.200 45.000 0.61 0.00 39.18 1.94
2813 3251 3.548793 TGGCCAACCCAGACATTTT 57.451 47.368 0.61 0.00 39.18 1.82
2854 3292 3.398318 ACTTTTCCACTTTTCCCCACT 57.602 42.857 0.00 0.00 0.00 4.00
2855 3293 3.196901 ACAACTTTTCCACTTTTCCCCAC 59.803 43.478 0.00 0.00 0.00 4.61
2856 3294 3.445987 ACAACTTTTCCACTTTTCCCCA 58.554 40.909 0.00 0.00 0.00 4.96
2860 3298 4.348656 GGTCGACAACTTTTCCACTTTTC 58.651 43.478 18.91 0.00 0.00 2.29
2863 3301 1.937899 CGGTCGACAACTTTTCCACTT 59.062 47.619 18.91 0.00 0.00 3.16
2876 3314 0.388263 GTGAGAGGGTTTCGGTCGAC 60.388 60.000 7.13 7.13 0.00 4.20
2879 3317 1.192803 AGGGTGAGAGGGTTTCGGTC 61.193 60.000 0.00 0.00 0.00 4.79
2881 3319 1.192146 TGAGGGTGAGAGGGTTTCGG 61.192 60.000 0.00 0.00 0.00 4.30
2882 3320 0.037232 GTGAGGGTGAGAGGGTTTCG 60.037 60.000 0.00 0.00 0.00 3.46
2898 3336 2.683933 GGGAGGCGGAGGAAGTGA 60.684 66.667 0.00 0.00 0.00 3.41
2899 3337 2.245438 GAAGGGAGGCGGAGGAAGTG 62.245 65.000 0.00 0.00 0.00 3.16
2900 3338 1.990614 GAAGGGAGGCGGAGGAAGT 60.991 63.158 0.00 0.00 0.00 3.01
2901 3339 2.904131 GAAGGGAGGCGGAGGAAG 59.096 66.667 0.00 0.00 0.00 3.46
2902 3340 3.075005 CGAAGGGAGGCGGAGGAA 61.075 66.667 0.00 0.00 0.00 3.36
2946 3384 2.667199 GTACAAGGGTGCGGCGTT 60.667 61.111 9.37 0.00 0.00 4.84
2954 3392 2.029964 CGGCACACGTACAAGGGT 59.970 61.111 0.00 0.00 37.93 4.34
2984 3424 3.834056 TAGGAGGAGGAGGGGGCG 61.834 72.222 0.00 0.00 0.00 6.13
3026 3471 1.382146 GGGTGTATCTGGGGGACGA 60.382 63.158 0.00 0.00 0.00 4.20
3050 3496 1.186200 GGGGGATTGTGCTTTCCTTC 58.814 55.000 0.00 0.00 32.34 3.46
3051 3497 0.611896 CGGGGGATTGTGCTTTCCTT 60.612 55.000 0.00 0.00 32.34 3.36
3055 3501 2.679996 GCCGGGGGATTGTGCTTT 60.680 61.111 2.18 0.00 0.00 3.51
3109 3557 2.202756 GACACGGACGGATGAGGC 60.203 66.667 0.00 0.00 0.00 4.70
3168 3616 3.217743 GGCCGGAGTAGCTACGCT 61.218 66.667 24.17 6.46 43.41 5.07
3193 3641 3.470888 CCGCCCTGGAGGACGAAT 61.471 66.667 2.58 0.00 42.00 3.34
3232 3680 4.879545 ACGGATGTTGTTAGTGTTGAACTT 59.120 37.500 0.00 0.00 40.56 2.66
3243 3691 3.070446 AGAAGGTGTCACGGATGTTGTTA 59.930 43.478 0.00 0.00 0.00 2.41
3265 3713 0.041684 TCCATCTGGAGCAGGAGACA 59.958 55.000 0.00 0.00 39.78 3.41
3284 3732 2.426522 CACCGAACATGAGGACATTGT 58.573 47.619 0.00 0.00 34.15 2.71
3330 3779 3.016736 CAACTCGATTTGGGCAATAGGT 58.983 45.455 7.58 0.00 0.00 3.08
3348 3797 9.330063 TGAGATCTCACATATAAAATGACCAAC 57.670 33.333 21.67 0.00 34.14 3.77
3362 3811 5.931294 AGCAAATCAGATGAGATCTCACAT 58.069 37.500 27.37 15.83 43.11 3.21
3381 3830 1.547820 TGTGCAAACAACAAGGAGCAA 59.452 42.857 0.00 0.00 33.37 3.91
3403 3852 3.133014 CCATCCGTCCGATCTGCT 58.867 61.111 0.00 0.00 0.00 4.24
3404 3853 2.663188 GCCATCCGTCCGATCTGC 60.663 66.667 0.00 0.00 0.00 4.26
3405 3854 1.300465 CAGCCATCCGTCCGATCTG 60.300 63.158 0.00 0.00 0.00 2.90
3406 3855 2.502492 CCAGCCATCCGTCCGATCT 61.502 63.158 0.00 0.00 0.00 2.75
3407 3856 2.029666 CCAGCCATCCGTCCGATC 59.970 66.667 0.00 0.00 0.00 3.69
3408 3857 4.241555 GCCAGCCATCCGTCCGAT 62.242 66.667 0.00 0.00 0.00 4.18
3411 3860 4.864334 CTGGCCAGCCATCCGTCC 62.864 72.222 22.33 0.00 46.15 4.79
3463 3943 0.605319 GCCATTGACGTTGACTCCCA 60.605 55.000 0.00 0.00 0.00 4.37
3464 3944 1.635663 CGCCATTGACGTTGACTCCC 61.636 60.000 0.00 0.00 0.00 4.30
3469 3949 1.793581 GCATCGCCATTGACGTTGA 59.206 52.632 7.49 0.00 33.22 3.18
3485 3965 0.665835 AAATTTGCAGGTCGAACGCA 59.334 45.000 14.44 14.44 0.00 5.24
3501 3981 4.685628 CCGCAACAAAATTCTGCTACAAAT 59.314 37.500 0.00 0.00 33.82 2.32
3513 3993 2.266554 CACAACACACCGCAACAAAAT 58.733 42.857 0.00 0.00 0.00 1.82
3527 4007 2.684001 AGAGAACAACGACCACAACA 57.316 45.000 0.00 0.00 0.00 3.33
3528 4008 5.473796 TTAAAGAGAACAACGACCACAAC 57.526 39.130 0.00 0.00 0.00 3.32
3530 4010 6.203338 GGTATTTAAAGAGAACAACGACCACA 59.797 38.462 0.00 0.00 0.00 4.17
3531 4011 6.347969 GGGTATTTAAAGAGAACAACGACCAC 60.348 42.308 0.00 0.00 0.00 4.16
3532 4012 5.702209 GGGTATTTAAAGAGAACAACGACCA 59.298 40.000 0.00 0.00 0.00 4.02
3533 4013 5.122869 GGGGTATTTAAAGAGAACAACGACC 59.877 44.000 0.00 0.00 0.00 4.79
3542 4022 6.457159 TTCAACAGGGGGTATTTAAAGAGA 57.543 37.500 0.00 0.00 0.00 3.10
3576 4056 5.348986 TGCCTTGTCGTGATAAAGAGATAC 58.651 41.667 0.00 0.00 0.00 2.24
3583 4063 3.734463 TCACTTGCCTTGTCGTGATAAA 58.266 40.909 0.00 0.00 32.00 1.40
3632 4112 7.921745 TTTTATTTATAAAGTTGGGCGTATGCC 59.078 33.333 18.30 18.30 45.21 4.40
3633 4113 8.748582 GTTTTATTTATAAAGTTGGGCGTATGC 58.251 33.333 3.94 0.00 35.57 3.14
3634 4114 9.240159 GGTTTTATTTATAAAGTTGGGCGTATG 57.760 33.333 3.94 0.00 34.13 2.39
3635 4115 8.968969 TGGTTTTATTTATAAAGTTGGGCGTAT 58.031 29.630 3.94 0.00 34.13 3.06
3636 4116 8.345724 TGGTTTTATTTATAAAGTTGGGCGTA 57.654 30.769 3.94 0.00 34.13 4.42
3637 4117 7.229581 TGGTTTTATTTATAAAGTTGGGCGT 57.770 32.000 3.94 0.00 34.13 5.68
3638 4118 8.535690 TTTGGTTTTATTTATAAAGTTGGGCG 57.464 30.769 3.94 0.00 34.13 6.13
3644 4124 9.719355 CCTGCCTTTTGGTTTTATTTATAAAGT 57.281 29.630 3.94 0.00 42.99 2.66
3645 4125 9.719355 ACCTGCCTTTTGGTTTTATTTATAAAG 57.281 29.630 3.94 0.00 42.99 1.85
3648 4128 8.471609 GCTACCTGCCTTTTGGTTTTATTTATA 58.528 33.333 0.00 0.00 42.99 0.98
3649 4129 7.038658 TGCTACCTGCCTTTTGGTTTTATTTAT 60.039 33.333 0.00 0.00 42.99 1.40
3650 4130 6.267928 TGCTACCTGCCTTTTGGTTTTATTTA 59.732 34.615 0.00 0.00 42.99 1.40
3651 4131 5.071115 TGCTACCTGCCTTTTGGTTTTATTT 59.929 36.000 0.00 0.00 42.99 1.40
3652 4132 4.591072 TGCTACCTGCCTTTTGGTTTTATT 59.409 37.500 0.00 0.00 42.99 1.40
3653 4133 4.156477 TGCTACCTGCCTTTTGGTTTTAT 58.844 39.130 0.00 0.00 42.99 1.40
3654 4134 3.567397 TGCTACCTGCCTTTTGGTTTTA 58.433 40.909 0.00 0.00 42.99 1.52
3655 4135 2.393646 TGCTACCTGCCTTTTGGTTTT 58.606 42.857 0.00 0.00 42.99 2.43
3656 4136 2.080654 TGCTACCTGCCTTTTGGTTT 57.919 45.000 0.00 0.00 42.99 3.27
3657 4137 2.080654 TTGCTACCTGCCTTTTGGTT 57.919 45.000 0.00 0.00 42.99 3.67
3658 4138 2.309136 ATTGCTACCTGCCTTTTGGT 57.691 45.000 0.00 0.00 42.99 3.67
3659 4139 3.509575 TGTTATTGCTACCTGCCTTTTGG 59.490 43.478 0.00 0.00 42.00 3.28
3660 4140 4.782019 TGTTATTGCTACCTGCCTTTTG 57.218 40.909 0.00 0.00 42.00 2.44
3661 4141 4.320935 CGTTGTTATTGCTACCTGCCTTTT 60.321 41.667 0.00 0.00 42.00 2.27
3662 4142 3.190535 CGTTGTTATTGCTACCTGCCTTT 59.809 43.478 0.00 0.00 42.00 3.11
3663 4143 2.747446 CGTTGTTATTGCTACCTGCCTT 59.253 45.455 0.00 0.00 42.00 4.35
3664 4144 2.290071 ACGTTGTTATTGCTACCTGCCT 60.290 45.455 0.00 0.00 42.00 4.75
3665 4145 2.081462 ACGTTGTTATTGCTACCTGCC 58.919 47.619 0.00 0.00 42.00 4.85
3666 4146 3.308866 CCTACGTTGTTATTGCTACCTGC 59.691 47.826 0.00 0.00 43.25 4.85
3667 4147 4.751060 TCCTACGTTGTTATTGCTACCTG 58.249 43.478 0.00 0.00 0.00 4.00
3668 4148 5.410355 TTCCTACGTTGTTATTGCTACCT 57.590 39.130 0.00 0.00 0.00 3.08
3669 4149 5.640783 ACTTTCCTACGTTGTTATTGCTACC 59.359 40.000 0.00 0.00 0.00 3.18
3670 4150 6.716898 ACTTTCCTACGTTGTTATTGCTAC 57.283 37.500 0.00 0.00 0.00 3.58
3671 4151 8.252417 TGATACTTTCCTACGTTGTTATTGCTA 58.748 33.333 0.00 0.00 0.00 3.49
3672 4152 7.101054 TGATACTTTCCTACGTTGTTATTGCT 58.899 34.615 0.00 0.00 0.00 3.91
3673 4153 7.298507 TGATACTTTCCTACGTTGTTATTGC 57.701 36.000 0.00 0.00 0.00 3.56
3674 4154 9.537848 GTTTGATACTTTCCTACGTTGTTATTG 57.462 33.333 0.00 0.00 0.00 1.90
3675 4155 9.275398 TGTTTGATACTTTCCTACGTTGTTATT 57.725 29.630 0.00 0.00 0.00 1.40
3676 4156 8.715088 GTGTTTGATACTTTCCTACGTTGTTAT 58.285 33.333 0.00 0.00 0.00 1.89
3677 4157 7.096106 CGTGTTTGATACTTTCCTACGTTGTTA 60.096 37.037 0.00 0.00 0.00 2.41
3678 4158 6.292488 CGTGTTTGATACTTTCCTACGTTGTT 60.292 38.462 0.00 0.00 0.00 2.83
3679 4159 5.176223 CGTGTTTGATACTTTCCTACGTTGT 59.824 40.000 0.00 0.00 0.00 3.32
3680 4160 5.605327 CGTGTTTGATACTTTCCTACGTTG 58.395 41.667 0.00 0.00 0.00 4.10
3681 4161 4.151157 GCGTGTTTGATACTTTCCTACGTT 59.849 41.667 0.00 0.00 0.00 3.99
3682 4162 3.676646 GCGTGTTTGATACTTTCCTACGT 59.323 43.478 0.00 0.00 0.00 3.57
3683 4163 3.061697 GGCGTGTTTGATACTTTCCTACG 59.938 47.826 0.00 0.00 0.00 3.51
3684 4164 3.998341 TGGCGTGTTTGATACTTTCCTAC 59.002 43.478 0.00 0.00 0.00 3.18
3685 4165 4.274602 TGGCGTGTTTGATACTTTCCTA 57.725 40.909 0.00 0.00 0.00 2.94
3686 4166 3.134574 TGGCGTGTTTGATACTTTCCT 57.865 42.857 0.00 0.00 0.00 3.36
3687 4167 3.821841 CTTGGCGTGTTTGATACTTTCC 58.178 45.455 0.00 0.00 0.00 3.13
3688 4168 3.234386 GCTTGGCGTGTTTGATACTTTC 58.766 45.455 0.00 0.00 0.00 2.62
3689 4169 2.030274 GGCTTGGCGTGTTTGATACTTT 60.030 45.455 0.00 0.00 0.00 2.66
3690 4170 1.539827 GGCTTGGCGTGTTTGATACTT 59.460 47.619 0.00 0.00 0.00 2.24
3691 4171 1.165270 GGCTTGGCGTGTTTGATACT 58.835 50.000 0.00 0.00 0.00 2.12
3692 4172 0.170339 GGGCTTGGCGTGTTTGATAC 59.830 55.000 0.00 0.00 0.00 2.24
3693 4173 0.963355 GGGGCTTGGCGTGTTTGATA 60.963 55.000 0.00 0.00 0.00 2.15
3694 4174 2.275380 GGGGCTTGGCGTGTTTGAT 61.275 57.895 0.00 0.00 0.00 2.57
3695 4175 2.909965 GGGGCTTGGCGTGTTTGA 60.910 61.111 0.00 0.00 0.00 2.69
3696 4176 4.341502 CGGGGCTTGGCGTGTTTG 62.342 66.667 0.00 0.00 0.00 2.93
3697 4177 4.572571 TCGGGGCTTGGCGTGTTT 62.573 61.111 0.00 0.00 0.00 2.83
3703 4183 4.785453 CCTCTGTCGGGGCTTGGC 62.785 72.222 0.00 0.00 0.00 4.52
3704 4184 4.101448 CCCTCTGTCGGGGCTTGG 62.101 72.222 0.00 0.00 40.75 3.61
3709 4189 3.775654 GTCTGCCCTCTGTCGGGG 61.776 72.222 6.86 0.00 44.83 5.73
3711 4191 2.681778 AGGTCTGCCCTCTGTCGG 60.682 66.667 0.00 0.00 40.71 4.79
3719 4199 0.036306 TTTCTTTCGGAGGTCTGCCC 59.964 55.000 0.00 0.00 34.57 5.36
3720 4200 1.892209 TTTTCTTTCGGAGGTCTGCC 58.108 50.000 0.00 0.00 0.00 4.85
3721 4201 2.879026 ACTTTTTCTTTCGGAGGTCTGC 59.121 45.455 0.00 0.00 0.00 4.26
3722 4202 4.127171 TGACTTTTTCTTTCGGAGGTCTG 58.873 43.478 0.00 0.00 0.00 3.51
3723 4203 4.381411 CTGACTTTTTCTTTCGGAGGTCT 58.619 43.478 0.00 0.00 0.00 3.85
3724 4204 3.498777 CCTGACTTTTTCTTTCGGAGGTC 59.501 47.826 0.00 0.00 0.00 3.85
3725 4205 3.118000 ACCTGACTTTTTCTTTCGGAGGT 60.118 43.478 0.00 0.00 0.00 3.85
3726 4206 3.477530 ACCTGACTTTTTCTTTCGGAGG 58.522 45.455 0.00 0.00 0.00 4.30
3727 4207 5.593183 GTACCTGACTTTTTCTTTCGGAG 57.407 43.478 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.