Multiple sequence alignment - TraesCS5B01G205900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G205900 chr5B 100.000 2468 0 0 1 2468 375180031 375177564 0.000000e+00 4558.0
1 TraesCS5B01G205900 chr5B 86.066 122 13 4 2 123 616764410 616764293 7.160000e-26 128.0
2 TraesCS5B01G205900 chr5B 84.112 107 16 1 1678 1784 712870972 712870867 4.340000e-18 102.0
3 TraesCS5B01G205900 chr5D 87.323 1341 82 29 454 1768 322975540 322974262 0.000000e+00 1454.0
4 TraesCS5B01G205900 chr5D 86.466 665 63 16 1822 2468 530118353 530117698 0.000000e+00 704.0
5 TraesCS5B01G205900 chr5A 87.048 1328 71 43 454 1769 419693552 419692314 0.000000e+00 1406.0
6 TraesCS5B01G205900 chr5A 88.475 295 28 6 151 443 700212659 700212369 3.900000e-93 351.0
7 TraesCS5B01G205900 chr5A 78.448 116 19 6 1678 1790 431906996 431906884 1.220000e-08 71.3
8 TraesCS5B01G205900 chr7D 86.103 662 67 16 1822 2468 413877921 413878572 0.000000e+00 689.0
9 TraesCS5B01G205900 chr7D 85.564 665 70 17 1822 2468 440243978 440243322 0.000000e+00 673.0
10 TraesCS5B01G205900 chr7D 85.180 668 69 18 1822 2464 60577827 60578489 0.000000e+00 658.0
11 TraesCS5B01G205900 chr7D 85.977 599 61 11 1822 2404 519293042 519293633 9.700000e-174 619.0
12 TraesCS5B01G205900 chr2D 85.758 660 69 13 1822 2466 586113667 586114316 0.000000e+00 675.0
13 TraesCS5B01G205900 chr6D 85.207 676 66 18 1819 2468 422188204 422187537 0.000000e+00 664.0
14 TraesCS5B01G205900 chr6D 89.123 285 31 0 151 435 94777888 94778172 3.020000e-94 355.0
15 TraesCS5B01G205900 chr6D 88.621 290 31 2 151 439 372788408 372788120 3.900000e-93 351.0
16 TraesCS5B01G205900 chr2B 93.578 436 27 1 1 435 83934071 83934506 0.000000e+00 649.0
17 TraesCS5B01G205900 chr2B 89.860 286 28 1 151 436 711446345 711446629 1.390000e-97 366.0
18 TraesCS5B01G205900 chr1D 84.281 668 75 19 1818 2465 95931285 95930628 2.080000e-175 625.0
19 TraesCS5B01G205900 chr1D 84.361 665 70 22 1824 2468 95878162 95877512 2.700000e-174 621.0
20 TraesCS5B01G205900 chr7A 88.811 286 32 0 151 436 625366769 625366484 3.900000e-93 351.0
21 TraesCS5B01G205900 chr7B 88.772 285 28 3 151 434 117658396 117658115 1.820000e-91 346.0
22 TraesCS5B01G205900 chr7B 88.462 286 33 0 151 436 547275504 547275789 1.820000e-91 346.0
23 TraesCS5B01G205900 chr3B 79.181 562 68 27 1920 2468 431980140 431979615 6.530000e-91 344.0
24 TraesCS5B01G205900 chr3B 86.885 122 12 2 2 123 13689646 13689763 1.540000e-27 134.0
25 TraesCS5B01G205900 chr3B 86.066 122 13 2 2 123 587290947 587291064 7.160000e-26 128.0
26 TraesCS5B01G205900 chr4D 88.194 288 32 2 151 437 19148667 19148381 2.350000e-90 342.0
27 TraesCS5B01G205900 chr3A 86.066 122 13 3 2 123 63413254 63413137 7.160000e-26 128.0
28 TraesCS5B01G205900 chr3A 86.066 122 13 2 2 123 154343774 154343891 7.160000e-26 128.0
29 TraesCS5B01G205900 chr1B 86.066 122 13 2 2 123 371682083 371681966 7.160000e-26 128.0
30 TraesCS5B01G205900 chr1B 86.066 122 13 2 2 123 496144276 496144159 7.160000e-26 128.0
31 TraesCS5B01G205900 chr1B 79.618 157 21 5 1678 1825 341751022 341750868 4.340000e-18 102.0
32 TraesCS5B01G205900 chr1A 86.066 122 13 2 2 123 41729059 41729176 7.160000e-26 128.0
33 TraesCS5B01G205900 chr4B 94.444 36 2 0 1727 1762 652290007 652289972 3.430000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G205900 chr5B 375177564 375180031 2467 True 4558 4558 100.000 1 2468 1 chr5B.!!$R1 2467
1 TraesCS5B01G205900 chr5D 322974262 322975540 1278 True 1454 1454 87.323 454 1768 1 chr5D.!!$R1 1314
2 TraesCS5B01G205900 chr5D 530117698 530118353 655 True 704 704 86.466 1822 2468 1 chr5D.!!$R2 646
3 TraesCS5B01G205900 chr5A 419692314 419693552 1238 True 1406 1406 87.048 454 1769 1 chr5A.!!$R1 1315
4 TraesCS5B01G205900 chr7D 413877921 413878572 651 False 689 689 86.103 1822 2468 1 chr7D.!!$F2 646
5 TraesCS5B01G205900 chr7D 440243322 440243978 656 True 673 673 85.564 1822 2468 1 chr7D.!!$R1 646
6 TraesCS5B01G205900 chr7D 60577827 60578489 662 False 658 658 85.180 1822 2464 1 chr7D.!!$F1 642
7 TraesCS5B01G205900 chr7D 519293042 519293633 591 False 619 619 85.977 1822 2404 1 chr7D.!!$F3 582
8 TraesCS5B01G205900 chr2D 586113667 586114316 649 False 675 675 85.758 1822 2466 1 chr2D.!!$F1 644
9 TraesCS5B01G205900 chr6D 422187537 422188204 667 True 664 664 85.207 1819 2468 1 chr6D.!!$R2 649
10 TraesCS5B01G205900 chr1D 95930628 95931285 657 True 625 625 84.281 1818 2465 1 chr1D.!!$R2 647
11 TraesCS5B01G205900 chr1D 95877512 95878162 650 True 621 621 84.361 1824 2468 1 chr1D.!!$R1 644
12 TraesCS5B01G205900 chr3B 431979615 431980140 525 True 344 344 79.181 1920 2468 1 chr3B.!!$R1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
126 127 0.036010 CTCCTTGTTCATGGCGTCCT 60.036 55.0 0.0 0.0 0.00 3.85 F
240 241 0.039256 CCATGCGGACAACCAAACAG 60.039 55.0 0.0 0.0 35.59 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1446 1473 0.108615 AAGCCTCGAAGATGGTGTCG 60.109 55.0 0.00 0.0 32.35 4.35 R
2213 2275 0.182775 GGTGCCACCGGAATCCTATT 59.817 55.0 9.46 0.0 0.00 1.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.760385 AGGCCCAGCTAGGTCGAC 60.760 66.667 7.13 7.13 36.30 4.20
18 19 4.208686 GGCCCAGCTAGGTCGACG 62.209 72.222 9.92 0.00 34.66 5.12
19 20 4.208686 GCCCAGCTAGGTCGACGG 62.209 72.222 9.92 4.19 34.66 4.79
20 21 4.208686 CCCAGCTAGGTCGACGGC 62.209 72.222 9.92 13.38 34.66 5.68
21 22 4.554363 CCAGCTAGGTCGACGGCG 62.554 72.222 2.87 2.87 39.35 6.46
25 26 4.554363 CTAGGTCGACGGCGCTGG 62.554 72.222 22.44 9.44 37.46 4.85
39 40 2.821366 CTGGCGACCATGGCTGTC 60.821 66.667 13.04 6.56 30.82 3.51
44 45 4.445699 GACCATGGCTGTCGGATC 57.554 61.111 13.04 0.00 0.00 3.36
45 46 1.227674 GACCATGGCTGTCGGATCC 60.228 63.158 13.04 0.00 0.00 3.36
46 47 2.280389 CCATGGCTGTCGGATCCG 60.280 66.667 28.62 28.62 41.35 4.18
47 48 2.280389 CATGGCTGTCGGATCCGG 60.280 66.667 32.79 18.59 40.25 5.14
48 49 4.241555 ATGGCTGTCGGATCCGGC 62.242 66.667 31.57 31.57 45.14 6.13
69 70 4.554036 GCCATGGCCGACCTCCTC 62.554 72.222 27.24 0.00 36.63 3.71
70 71 3.866582 CCATGGCCGACCTCCTCC 61.867 72.222 0.00 0.00 36.63 4.30
71 72 3.866582 CATGGCCGACCTCCTCCC 61.867 72.222 0.00 0.00 36.63 4.30
72 73 4.095400 ATGGCCGACCTCCTCCCT 62.095 66.667 0.00 0.00 36.63 4.20
73 74 4.779733 TGGCCGACCTCCTCCCTC 62.780 72.222 0.00 0.00 36.63 4.30
75 76 4.467107 GCCGACCTCCTCCCTCCT 62.467 72.222 0.00 0.00 0.00 3.69
76 77 2.443016 CCGACCTCCTCCCTCCTG 60.443 72.222 0.00 0.00 0.00 3.86
77 78 2.360980 CGACCTCCTCCCTCCTGT 59.639 66.667 0.00 0.00 0.00 4.00
78 79 2.055042 CGACCTCCTCCCTCCTGTG 61.055 68.421 0.00 0.00 0.00 3.66
79 80 2.284995 ACCTCCTCCCTCCTGTGC 60.285 66.667 0.00 0.00 0.00 4.57
80 81 2.040278 CCTCCTCCCTCCTGTGCT 59.960 66.667 0.00 0.00 0.00 4.40
81 82 1.614824 CCTCCTCCCTCCTGTGCTT 60.615 63.158 0.00 0.00 0.00 3.91
82 83 1.621672 CCTCCTCCCTCCTGTGCTTC 61.622 65.000 0.00 0.00 0.00 3.86
83 84 1.613630 TCCTCCCTCCTGTGCTTCC 60.614 63.158 0.00 0.00 0.00 3.46
84 85 1.614824 CCTCCCTCCTGTGCTTCCT 60.615 63.158 0.00 0.00 0.00 3.36
85 86 0.325671 CCTCCCTCCTGTGCTTCCTA 60.326 60.000 0.00 0.00 0.00 2.94
86 87 0.827368 CTCCCTCCTGTGCTTCCTAC 59.173 60.000 0.00 0.00 0.00 3.18
87 88 0.413832 TCCCTCCTGTGCTTCCTACT 59.586 55.000 0.00 0.00 0.00 2.57
88 89 1.644337 TCCCTCCTGTGCTTCCTACTA 59.356 52.381 0.00 0.00 0.00 1.82
89 90 2.035632 CCCTCCTGTGCTTCCTACTAG 58.964 57.143 0.00 0.00 0.00 2.57
90 91 2.035632 CCTCCTGTGCTTCCTACTAGG 58.964 57.143 0.00 0.00 36.46 3.02
91 92 2.624557 CCTCCTGTGCTTCCTACTAGGT 60.625 54.545 1.83 0.00 36.53 3.08
92 93 2.691011 CTCCTGTGCTTCCTACTAGGTC 59.309 54.545 1.83 0.00 36.53 3.85
93 94 1.405821 CCTGTGCTTCCTACTAGGTCG 59.594 57.143 1.83 0.00 36.53 4.79
94 95 0.815734 TGTGCTTCCTACTAGGTCGC 59.184 55.000 1.83 6.70 36.53 5.19
95 96 0.102663 GTGCTTCCTACTAGGTCGCC 59.897 60.000 12.71 4.65 36.53 5.54
96 97 0.323999 TGCTTCCTACTAGGTCGCCA 60.324 55.000 12.71 1.72 36.53 5.69
97 98 1.041437 GCTTCCTACTAGGTCGCCAT 58.959 55.000 1.83 0.00 36.53 4.40
98 99 1.269831 GCTTCCTACTAGGTCGCCATG 60.270 57.143 1.83 0.00 36.53 3.66
99 100 1.341531 CTTCCTACTAGGTCGCCATGG 59.658 57.143 7.63 7.63 36.53 3.66
100 101 1.113517 TCCTACTAGGTCGCCATGGC 61.114 60.000 27.67 27.67 36.53 4.40
101 102 1.367840 CTACTAGGTCGCCATGGCC 59.632 63.158 30.79 17.56 37.98 5.36
102 103 2.421877 CTACTAGGTCGCCATGGCCG 62.422 65.000 30.79 24.04 37.98 6.13
117 118 4.697756 CCGCGGGCTCCTTGTTCA 62.698 66.667 20.10 0.00 0.00 3.18
118 119 2.436646 CGCGGGCTCCTTGTTCAT 60.437 61.111 0.00 0.00 0.00 2.57
119 120 2.753966 CGCGGGCTCCTTGTTCATG 61.754 63.158 0.00 0.00 0.00 3.07
120 121 2.409870 GCGGGCTCCTTGTTCATGG 61.410 63.158 0.00 0.00 0.00 3.66
121 122 2.409870 CGGGCTCCTTGTTCATGGC 61.410 63.158 0.00 0.00 0.00 4.40
122 123 2.409870 GGGCTCCTTGTTCATGGCG 61.410 63.158 0.00 0.00 0.00 5.69
123 124 1.675641 GGCTCCTTGTTCATGGCGT 60.676 57.895 0.00 0.00 0.00 5.68
124 125 1.648467 GGCTCCTTGTTCATGGCGTC 61.648 60.000 0.00 0.00 0.00 5.19
125 126 1.648467 GCTCCTTGTTCATGGCGTCC 61.648 60.000 0.00 0.00 0.00 4.79
126 127 0.036010 CTCCTTGTTCATGGCGTCCT 60.036 55.000 0.00 0.00 0.00 3.85
127 128 0.321564 TCCTTGTTCATGGCGTCCTG 60.322 55.000 0.00 0.00 0.00 3.86
128 129 1.503542 CTTGTTCATGGCGTCCTGC 59.496 57.895 0.00 0.00 45.38 4.85
129 130 0.957395 CTTGTTCATGGCGTCCTGCT 60.957 55.000 0.00 0.00 45.43 4.24
130 131 0.955428 TTGTTCATGGCGTCCTGCTC 60.955 55.000 0.00 0.00 45.43 4.26
131 132 2.109126 GTTCATGGCGTCCTGCTCC 61.109 63.158 0.00 0.00 45.43 4.70
132 133 2.293318 TTCATGGCGTCCTGCTCCT 61.293 57.895 0.00 0.00 45.43 3.69
133 134 1.841302 TTCATGGCGTCCTGCTCCTT 61.841 55.000 0.00 0.00 45.43 3.36
134 135 1.817099 CATGGCGTCCTGCTCCTTC 60.817 63.158 0.00 0.00 45.43 3.46
135 136 3.036429 ATGGCGTCCTGCTCCTTCC 62.036 63.158 0.00 0.00 45.43 3.46
136 137 3.394836 GGCGTCCTGCTCCTTCCT 61.395 66.667 0.00 0.00 45.43 3.36
137 138 2.185608 GCGTCCTGCTCCTTCCTC 59.814 66.667 0.00 0.00 41.73 3.71
138 139 2.355193 GCGTCCTGCTCCTTCCTCT 61.355 63.158 0.00 0.00 41.73 3.69
139 140 1.515020 CGTCCTGCTCCTTCCTCTG 59.485 63.158 0.00 0.00 0.00 3.35
140 141 1.904032 GTCCTGCTCCTTCCTCTGG 59.096 63.158 0.00 0.00 0.00 3.86
141 142 0.907230 GTCCTGCTCCTTCCTCTGGT 60.907 60.000 0.00 0.00 0.00 4.00
142 143 0.178891 TCCTGCTCCTTCCTCTGGTT 60.179 55.000 0.00 0.00 0.00 3.67
143 144 0.695347 CCTGCTCCTTCCTCTGGTTT 59.305 55.000 0.00 0.00 0.00 3.27
144 145 1.339535 CCTGCTCCTTCCTCTGGTTTC 60.340 57.143 0.00 0.00 0.00 2.78
145 146 0.321671 TGCTCCTTCCTCTGGTTTCG 59.678 55.000 0.00 0.00 0.00 3.46
146 147 0.321996 GCTCCTTCCTCTGGTTTCGT 59.678 55.000 0.00 0.00 0.00 3.85
147 148 1.549170 GCTCCTTCCTCTGGTTTCGTA 59.451 52.381 0.00 0.00 0.00 3.43
148 149 2.417515 GCTCCTTCCTCTGGTTTCGTAG 60.418 54.545 0.00 0.00 0.00 3.51
149 150 1.549170 TCCTTCCTCTGGTTTCGTAGC 59.451 52.381 0.00 0.00 0.00 3.58
150 151 1.550976 CCTTCCTCTGGTTTCGTAGCT 59.449 52.381 0.00 0.00 0.00 3.32
151 152 2.028020 CCTTCCTCTGGTTTCGTAGCTT 60.028 50.000 0.00 0.00 0.00 3.74
152 153 3.254892 CTTCCTCTGGTTTCGTAGCTTC 58.745 50.000 0.00 0.00 0.00 3.86
153 154 2.244695 TCCTCTGGTTTCGTAGCTTCA 58.755 47.619 0.00 0.00 0.00 3.02
154 155 2.832129 TCCTCTGGTTTCGTAGCTTCAT 59.168 45.455 0.00 0.00 0.00 2.57
155 156 3.119101 TCCTCTGGTTTCGTAGCTTCATC 60.119 47.826 0.00 0.00 0.00 2.92
156 157 3.118956 CCTCTGGTTTCGTAGCTTCATCT 60.119 47.826 0.00 0.00 0.00 2.90
157 158 4.109050 CTCTGGTTTCGTAGCTTCATCTC 58.891 47.826 0.00 0.00 0.00 2.75
158 159 3.119101 TCTGGTTTCGTAGCTTCATCTCC 60.119 47.826 0.00 0.00 0.00 3.71
159 160 2.093658 TGGTTTCGTAGCTTCATCTCCC 60.094 50.000 0.00 0.00 0.00 4.30
160 161 2.552031 GTTTCGTAGCTTCATCTCCCC 58.448 52.381 0.00 0.00 0.00 4.81
161 162 1.120530 TTCGTAGCTTCATCTCCCCC 58.879 55.000 0.00 0.00 0.00 5.40
162 163 0.261991 TCGTAGCTTCATCTCCCCCT 59.738 55.000 0.00 0.00 0.00 4.79
163 164 1.123928 CGTAGCTTCATCTCCCCCTT 58.876 55.000 0.00 0.00 0.00 3.95
164 165 1.486726 CGTAGCTTCATCTCCCCCTTT 59.513 52.381 0.00 0.00 0.00 3.11
165 166 2.483889 CGTAGCTTCATCTCCCCCTTTC 60.484 54.545 0.00 0.00 0.00 2.62
166 167 1.978361 AGCTTCATCTCCCCCTTTCT 58.022 50.000 0.00 0.00 0.00 2.52
167 168 1.843206 AGCTTCATCTCCCCCTTTCTC 59.157 52.381 0.00 0.00 0.00 2.87
168 169 1.843206 GCTTCATCTCCCCCTTTCTCT 59.157 52.381 0.00 0.00 0.00 3.10
169 170 3.041946 GCTTCATCTCCCCCTTTCTCTA 58.958 50.000 0.00 0.00 0.00 2.43
170 171 3.181459 GCTTCATCTCCCCCTTTCTCTAC 60.181 52.174 0.00 0.00 0.00 2.59
171 172 4.294347 CTTCATCTCCCCCTTTCTCTACT 58.706 47.826 0.00 0.00 0.00 2.57
172 173 5.459505 CTTCATCTCCCCCTTTCTCTACTA 58.540 45.833 0.00 0.00 0.00 1.82
173 174 5.068215 TCATCTCCCCCTTTCTCTACTAG 57.932 47.826 0.00 0.00 0.00 2.57
174 175 3.315880 TCTCCCCCTTTCTCTACTAGC 57.684 52.381 0.00 0.00 0.00 3.42
175 176 2.860041 TCTCCCCCTTTCTCTACTAGCT 59.140 50.000 0.00 0.00 0.00 3.32
176 177 3.117436 TCTCCCCCTTTCTCTACTAGCTC 60.117 52.174 0.00 0.00 0.00 4.09
177 178 2.860041 TCCCCCTTTCTCTACTAGCTCT 59.140 50.000 0.00 0.00 0.00 4.09
178 179 3.272551 TCCCCCTTTCTCTACTAGCTCTT 59.727 47.826 0.00 0.00 0.00 2.85
179 180 4.481280 TCCCCCTTTCTCTACTAGCTCTTA 59.519 45.833 0.00 0.00 0.00 2.10
180 181 5.043582 TCCCCCTTTCTCTACTAGCTCTTAA 60.044 44.000 0.00 0.00 0.00 1.85
181 182 5.069383 CCCCCTTTCTCTACTAGCTCTTAAC 59.931 48.000 0.00 0.00 0.00 2.01
182 183 5.069383 CCCCTTTCTCTACTAGCTCTTAACC 59.931 48.000 0.00 0.00 0.00 2.85
183 184 5.657302 CCCTTTCTCTACTAGCTCTTAACCA 59.343 44.000 0.00 0.00 0.00 3.67
184 185 6.325286 CCCTTTCTCTACTAGCTCTTAACCAT 59.675 42.308 0.00 0.00 0.00 3.55
185 186 7.206687 CCTTTCTCTACTAGCTCTTAACCATG 58.793 42.308 0.00 0.00 0.00 3.66
186 187 7.147811 CCTTTCTCTACTAGCTCTTAACCATGT 60.148 40.741 0.00 0.00 0.00 3.21
187 188 6.701145 TCTCTACTAGCTCTTAACCATGTG 57.299 41.667 0.00 0.00 0.00 3.21
188 189 6.188407 TCTCTACTAGCTCTTAACCATGTGT 58.812 40.000 0.00 0.00 0.00 3.72
189 190 6.095580 TCTCTACTAGCTCTTAACCATGTGTG 59.904 42.308 0.00 0.00 0.00 3.82
190 191 3.600388 ACTAGCTCTTAACCATGTGTGC 58.400 45.455 0.00 0.00 0.00 4.57
191 192 2.867109 AGCTCTTAACCATGTGTGCT 57.133 45.000 0.00 0.00 0.00 4.40
192 193 3.981071 AGCTCTTAACCATGTGTGCTA 57.019 42.857 0.00 0.00 0.00 3.49
193 194 4.286297 AGCTCTTAACCATGTGTGCTAA 57.714 40.909 0.00 0.00 0.00 3.09
194 195 4.256920 AGCTCTTAACCATGTGTGCTAAG 58.743 43.478 0.00 0.00 0.00 2.18
195 196 4.003648 GCTCTTAACCATGTGTGCTAAGT 58.996 43.478 0.00 0.00 0.00 2.24
196 197 4.142816 GCTCTTAACCATGTGTGCTAAGTG 60.143 45.833 0.00 0.00 0.00 3.16
197 198 3.751175 TCTTAACCATGTGTGCTAAGTGC 59.249 43.478 0.00 0.00 43.25 4.40
208 209 2.100605 GCTAAGTGCAAGTGCTAGGT 57.899 50.000 4.69 0.00 42.66 3.08
209 210 2.003301 GCTAAGTGCAAGTGCTAGGTC 58.997 52.381 4.69 0.00 42.66 3.85
210 211 2.354203 GCTAAGTGCAAGTGCTAGGTCT 60.354 50.000 4.69 0.00 42.66 3.85
211 212 2.938956 AAGTGCAAGTGCTAGGTCTT 57.061 45.000 4.69 0.00 42.66 3.01
212 213 4.620803 GCTAAGTGCAAGTGCTAGGTCTTA 60.621 45.833 4.69 5.46 42.66 2.10
213 214 4.351874 AAGTGCAAGTGCTAGGTCTTAA 57.648 40.909 4.69 0.00 42.66 1.85
214 215 4.559862 AGTGCAAGTGCTAGGTCTTAAT 57.440 40.909 4.69 0.00 42.66 1.40
215 216 4.508662 AGTGCAAGTGCTAGGTCTTAATC 58.491 43.478 4.69 0.00 42.66 1.75
216 217 4.020218 AGTGCAAGTGCTAGGTCTTAATCA 60.020 41.667 4.69 0.00 42.66 2.57
217 218 4.878397 GTGCAAGTGCTAGGTCTTAATCAT 59.122 41.667 4.69 0.00 42.66 2.45
218 219 6.049149 GTGCAAGTGCTAGGTCTTAATCATA 58.951 40.000 4.69 0.00 42.66 2.15
219 220 6.018669 GTGCAAGTGCTAGGTCTTAATCATAC 60.019 42.308 4.69 0.00 42.66 2.39
220 221 6.127054 TGCAAGTGCTAGGTCTTAATCATACT 60.127 38.462 4.69 0.00 42.66 2.12
221 222 6.422400 GCAAGTGCTAGGTCTTAATCATACTC 59.578 42.308 0.00 0.00 38.21 2.59
222 223 6.658188 AGTGCTAGGTCTTAATCATACTCC 57.342 41.667 0.00 0.00 0.00 3.85
223 224 6.136857 AGTGCTAGGTCTTAATCATACTCCA 58.863 40.000 0.00 0.00 0.00 3.86
224 225 6.784969 AGTGCTAGGTCTTAATCATACTCCAT 59.215 38.462 0.00 0.00 0.00 3.41
225 226 6.870965 GTGCTAGGTCTTAATCATACTCCATG 59.129 42.308 0.00 0.00 35.81 3.66
226 227 5.872070 GCTAGGTCTTAATCATACTCCATGC 59.128 44.000 0.00 0.00 34.35 4.06
227 228 4.887748 AGGTCTTAATCATACTCCATGCG 58.112 43.478 0.00 0.00 34.35 4.73
228 229 3.997021 GGTCTTAATCATACTCCATGCGG 59.003 47.826 0.00 0.00 34.35 5.69
229 230 4.262463 GGTCTTAATCATACTCCATGCGGA 60.262 45.833 0.00 0.00 39.79 5.54
230 231 4.686554 GTCTTAATCATACTCCATGCGGAC 59.313 45.833 0.00 0.00 35.91 4.79
231 232 4.343814 TCTTAATCATACTCCATGCGGACA 59.656 41.667 0.00 0.00 35.91 4.02
232 233 3.558931 AATCATACTCCATGCGGACAA 57.441 42.857 0.00 0.00 35.91 3.18
233 234 2.309528 TCATACTCCATGCGGACAAC 57.690 50.000 0.00 0.00 35.91 3.32
234 235 1.134521 TCATACTCCATGCGGACAACC 60.135 52.381 0.00 0.00 35.91 3.77
235 236 0.908910 ATACTCCATGCGGACAACCA 59.091 50.000 0.00 0.00 35.91 3.67
236 237 0.687920 TACTCCATGCGGACAACCAA 59.312 50.000 0.00 0.00 35.91 3.67
237 238 0.179004 ACTCCATGCGGACAACCAAA 60.179 50.000 0.00 0.00 35.91 3.28
238 239 0.240945 CTCCATGCGGACAACCAAAC 59.759 55.000 0.00 0.00 35.91 2.93
239 240 0.466372 TCCATGCGGACAACCAAACA 60.466 50.000 0.00 0.00 35.91 2.83
240 241 0.039256 CCATGCGGACAACCAAACAG 60.039 55.000 0.00 0.00 35.59 3.16
241 242 0.664166 CATGCGGACAACCAAACAGC 60.664 55.000 0.00 0.00 35.59 4.40
242 243 2.051345 GCGGACAACCAAACAGCG 60.051 61.111 0.00 0.00 35.59 5.18
243 244 2.830285 GCGGACAACCAAACAGCGT 61.830 57.895 0.00 0.00 35.59 5.07
244 245 1.010125 CGGACAACCAAACAGCGTG 60.010 57.895 0.00 0.00 35.59 5.34
245 246 1.711060 CGGACAACCAAACAGCGTGT 61.711 55.000 0.00 0.00 35.59 4.49
246 247 1.301423 GGACAACCAAACAGCGTGTA 58.699 50.000 0.00 0.00 35.97 2.90
247 248 1.263217 GGACAACCAAACAGCGTGTAG 59.737 52.381 0.00 0.00 35.97 2.74
248 249 1.937899 GACAACCAAACAGCGTGTAGT 59.062 47.619 0.00 0.00 0.00 2.73
249 250 2.353579 GACAACCAAACAGCGTGTAGTT 59.646 45.455 0.00 0.00 0.00 2.24
250 251 2.096819 ACAACCAAACAGCGTGTAGTTG 59.903 45.455 17.10 17.10 39.65 3.16
251 252 0.661020 ACCAAACAGCGTGTAGTTGC 59.339 50.000 0.00 0.00 34.11 4.17
252 253 0.660488 CCAAACAGCGTGTAGTTGCA 59.340 50.000 0.00 0.00 34.11 4.08
253 254 1.266718 CCAAACAGCGTGTAGTTGCAT 59.733 47.619 0.00 0.00 34.11 3.96
254 255 2.309693 CAAACAGCGTGTAGTTGCATG 58.690 47.619 0.00 0.00 34.11 4.06
257 258 2.574212 GCGTGTAGTTGCATGCGC 60.574 61.111 14.09 0.00 40.86 6.09
258 259 2.098298 CGTGTAGTTGCATGCGCC 59.902 61.111 14.09 5.70 37.32 6.53
259 260 2.098298 GTGTAGTTGCATGCGCCG 59.902 61.111 14.09 0.00 37.32 6.46
260 261 3.798650 TGTAGTTGCATGCGCCGC 61.799 61.111 14.09 8.72 37.32 6.53
261 262 4.868900 GTAGTTGCATGCGCCGCG 62.869 66.667 14.09 8.83 37.32 6.46
273 274 4.403137 GCCGCGACAATGCAAGCA 62.403 61.111 8.23 0.00 34.78 3.91
274 275 2.254951 CCGCGACAATGCAAGCAA 59.745 55.556 8.23 0.00 34.15 3.91
275 276 2.082366 CCGCGACAATGCAAGCAAC 61.082 57.895 8.23 0.00 34.15 4.17
276 277 2.082366 CGCGACAATGCAAGCAACC 61.082 57.895 0.00 0.00 34.15 3.77
277 278 1.007502 GCGACAATGCAAGCAACCA 60.008 52.632 0.00 0.00 34.15 3.67
278 279 0.597118 GCGACAATGCAAGCAACCAA 60.597 50.000 0.00 0.00 34.15 3.67
279 280 1.850377 CGACAATGCAAGCAACCAAA 58.150 45.000 0.00 0.00 0.00 3.28
280 281 1.522258 CGACAATGCAAGCAACCAAAC 59.478 47.619 0.00 0.00 0.00 2.93
281 282 2.548875 GACAATGCAAGCAACCAAACA 58.451 42.857 0.00 0.00 0.00 2.83
282 283 2.935201 GACAATGCAAGCAACCAAACAA 59.065 40.909 0.00 0.00 0.00 2.83
283 284 2.677337 ACAATGCAAGCAACCAAACAAC 59.323 40.909 0.00 0.00 0.00 3.32
284 285 1.569708 ATGCAAGCAACCAAACAACG 58.430 45.000 0.00 0.00 0.00 4.10
285 286 0.244994 TGCAAGCAACCAAACAACGT 59.755 45.000 0.00 0.00 0.00 3.99
286 287 0.644843 GCAAGCAACCAAACAACGTG 59.355 50.000 0.00 0.00 0.00 4.49
287 288 0.644843 CAAGCAACCAAACAACGTGC 59.355 50.000 0.00 0.00 0.00 5.34
288 289 0.459411 AAGCAACCAAACAACGTGCC 60.459 50.000 0.00 0.00 0.00 5.01
289 290 1.153745 GCAACCAAACAACGTGCCA 60.154 52.632 0.00 0.00 0.00 4.92
290 291 0.737715 GCAACCAAACAACGTGCCAA 60.738 50.000 0.00 0.00 0.00 4.52
291 292 1.714794 CAACCAAACAACGTGCCAAA 58.285 45.000 0.00 0.00 0.00 3.28
292 293 1.658095 CAACCAAACAACGTGCCAAAG 59.342 47.619 0.00 0.00 0.00 2.77
293 294 0.892063 ACCAAACAACGTGCCAAAGT 59.108 45.000 0.00 0.00 0.00 2.66
294 295 1.273886 ACCAAACAACGTGCCAAAGTT 59.726 42.857 0.00 0.00 0.00 2.66
296 297 2.600731 CAAACAACGTGCCAAAGTTGA 58.399 42.857 17.60 0.00 45.33 3.18
297 298 3.186119 CAAACAACGTGCCAAAGTTGAT 58.814 40.909 17.60 6.35 45.33 2.57
298 299 3.518634 AACAACGTGCCAAAGTTGATT 57.481 38.095 17.60 8.11 45.33 2.57
299 300 3.518634 ACAACGTGCCAAAGTTGATTT 57.481 38.095 17.60 0.00 45.33 2.17
300 301 3.443976 ACAACGTGCCAAAGTTGATTTC 58.556 40.909 17.60 0.00 45.33 2.17
301 302 2.793278 ACGTGCCAAAGTTGATTTCC 57.207 45.000 0.00 0.00 0.00 3.13
302 303 2.306847 ACGTGCCAAAGTTGATTTCCT 58.693 42.857 0.00 0.00 0.00 3.36
303 304 3.482436 ACGTGCCAAAGTTGATTTCCTA 58.518 40.909 0.00 0.00 0.00 2.94
304 305 3.886505 ACGTGCCAAAGTTGATTTCCTAA 59.113 39.130 0.00 0.00 0.00 2.69
305 306 4.522789 ACGTGCCAAAGTTGATTTCCTAAT 59.477 37.500 0.00 0.00 0.00 1.73
306 307 4.858692 CGTGCCAAAGTTGATTTCCTAATG 59.141 41.667 0.00 0.00 0.00 1.90
307 308 4.627035 GTGCCAAAGTTGATTTCCTAATGC 59.373 41.667 0.00 0.00 0.00 3.56
308 309 4.282957 TGCCAAAGTTGATTTCCTAATGCA 59.717 37.500 0.00 0.00 0.00 3.96
309 310 4.866486 GCCAAAGTTGATTTCCTAATGCAG 59.134 41.667 0.00 0.00 0.00 4.41
323 324 3.301794 AATGCAGGAAGTCCATATGCA 57.698 42.857 13.32 13.32 44.98 3.96
324 325 2.804986 TGCAGGAAGTCCATATGCAA 57.195 45.000 9.61 0.00 40.36 4.08
325 326 2.646930 TGCAGGAAGTCCATATGCAAG 58.353 47.619 9.61 0.00 40.36 4.01
326 327 1.336125 GCAGGAAGTCCATATGCAAGC 59.664 52.381 0.00 0.00 35.51 4.01
327 328 2.646930 CAGGAAGTCCATATGCAAGCA 58.353 47.619 0.00 0.00 38.89 3.91
328 329 3.018856 CAGGAAGTCCATATGCAAGCAA 58.981 45.455 0.00 0.00 38.89 3.91
329 330 3.019564 AGGAAGTCCATATGCAAGCAAC 58.980 45.455 0.00 0.00 38.89 4.17
330 331 2.099756 GGAAGTCCATATGCAAGCAACC 59.900 50.000 0.00 0.00 35.64 3.77
331 332 2.512692 AGTCCATATGCAAGCAACCA 57.487 45.000 0.00 0.00 0.00 3.67
332 333 2.806434 AGTCCATATGCAAGCAACCAA 58.194 42.857 0.00 0.00 0.00 3.67
333 334 3.164268 AGTCCATATGCAAGCAACCAAA 58.836 40.909 0.00 0.00 0.00 3.28
334 335 3.056607 AGTCCATATGCAAGCAACCAAAC 60.057 43.478 0.00 0.00 0.00 2.93
335 336 2.896044 TCCATATGCAAGCAACCAAACA 59.104 40.909 0.00 0.00 0.00 2.83
336 337 3.323115 TCCATATGCAAGCAACCAAACAA 59.677 39.130 0.00 0.00 0.00 2.83
337 338 3.432933 CCATATGCAAGCAACCAAACAAC 59.567 43.478 0.00 0.00 0.00 3.32
338 339 2.985957 ATGCAAGCAACCAAACAACT 57.014 40.000 0.00 0.00 0.00 3.16
339 340 2.292103 TGCAAGCAACCAAACAACTC 57.708 45.000 0.00 0.00 0.00 3.01
340 341 1.199624 GCAAGCAACCAAACAACTCG 58.800 50.000 0.00 0.00 0.00 4.18
341 342 1.199624 CAAGCAACCAAACAACTCGC 58.800 50.000 0.00 0.00 0.00 5.03
342 343 0.814457 AAGCAACCAAACAACTCGCA 59.186 45.000 0.00 0.00 0.00 5.10
343 344 0.381801 AGCAACCAAACAACTCGCAG 59.618 50.000 0.00 0.00 0.00 5.18
344 345 0.380378 GCAACCAAACAACTCGCAGA 59.620 50.000 0.00 0.00 0.00 4.26
345 346 1.001378 GCAACCAAACAACTCGCAGAT 60.001 47.619 0.00 0.00 33.89 2.90
346 347 2.653890 CAACCAAACAACTCGCAGATG 58.346 47.619 0.00 0.00 33.89 2.90
347 348 1.967319 ACCAAACAACTCGCAGATGT 58.033 45.000 0.00 0.00 32.27 3.06
348 349 1.873591 ACCAAACAACTCGCAGATGTC 59.126 47.619 0.91 0.00 29.45 3.06
349 350 1.136252 CCAAACAACTCGCAGATGTCG 60.136 52.381 0.91 0.00 29.45 4.35
350 351 0.512952 AAACAACTCGCAGATGTCGC 59.487 50.000 0.91 0.00 29.45 5.19
351 352 0.599991 AACAACTCGCAGATGTCGCA 60.600 50.000 0.91 0.00 29.45 5.10
352 353 0.390340 ACAACTCGCAGATGTCGCAT 60.390 50.000 0.00 0.00 33.89 4.73
353 354 1.135112 ACAACTCGCAGATGTCGCATA 60.135 47.619 0.00 0.00 33.89 3.14
354 355 2.130395 CAACTCGCAGATGTCGCATAT 58.870 47.619 0.00 0.00 33.89 1.78
355 356 1.775869 ACTCGCAGATGTCGCATATG 58.224 50.000 0.00 0.00 33.89 1.78
356 357 1.338020 ACTCGCAGATGTCGCATATGA 59.662 47.619 6.97 0.00 33.89 2.15
357 358 1.984297 CTCGCAGATGTCGCATATGAG 59.016 52.381 6.97 2.88 33.89 2.90
358 359 1.066136 CGCAGATGTCGCATATGAGG 58.934 55.000 6.97 0.00 0.00 3.86
359 360 0.795085 GCAGATGTCGCATATGAGGC 59.205 55.000 6.97 5.31 0.00 4.70
360 361 1.607509 GCAGATGTCGCATATGAGGCT 60.608 52.381 12.39 0.00 0.00 4.58
361 362 2.353109 GCAGATGTCGCATATGAGGCTA 60.353 50.000 12.39 0.00 0.00 3.93
362 363 3.678252 GCAGATGTCGCATATGAGGCTAT 60.678 47.826 12.39 4.45 0.00 2.97
363 364 4.502016 CAGATGTCGCATATGAGGCTATT 58.498 43.478 12.39 0.00 0.00 1.73
364 365 4.934001 CAGATGTCGCATATGAGGCTATTT 59.066 41.667 12.39 0.00 0.00 1.40
365 366 5.410746 CAGATGTCGCATATGAGGCTATTTT 59.589 40.000 12.39 0.00 0.00 1.82
366 367 6.000219 AGATGTCGCATATGAGGCTATTTTT 59.000 36.000 12.39 0.00 0.00 1.94
388 389 8.746052 TTTTTCAGAACCAGATTGAGTAAAGA 57.254 30.769 0.00 0.00 0.00 2.52
389 390 8.746052 TTTTCAGAACCAGATTGAGTAAAGAA 57.254 30.769 0.00 0.00 0.00 2.52
390 391 7.969536 TTCAGAACCAGATTGAGTAAAGAAG 57.030 36.000 0.00 0.00 0.00 2.85
391 392 7.067496 TCAGAACCAGATTGAGTAAAGAAGT 57.933 36.000 0.00 0.00 0.00 3.01
392 393 6.931281 TCAGAACCAGATTGAGTAAAGAAGTG 59.069 38.462 0.00 0.00 0.00 3.16
393 394 6.708054 CAGAACCAGATTGAGTAAAGAAGTGT 59.292 38.462 0.00 0.00 0.00 3.55
394 395 7.872993 CAGAACCAGATTGAGTAAAGAAGTGTA 59.127 37.037 0.00 0.00 0.00 2.90
395 396 8.598041 AGAACCAGATTGAGTAAAGAAGTGTAT 58.402 33.333 0.00 0.00 0.00 2.29
396 397 8.553459 AACCAGATTGAGTAAAGAAGTGTATG 57.447 34.615 0.00 0.00 0.00 2.39
397 398 7.680730 ACCAGATTGAGTAAAGAAGTGTATGT 58.319 34.615 0.00 0.00 0.00 2.29
398 399 7.604164 ACCAGATTGAGTAAAGAAGTGTATGTG 59.396 37.037 0.00 0.00 0.00 3.21
399 400 7.819415 CCAGATTGAGTAAAGAAGTGTATGTGA 59.181 37.037 0.00 0.00 0.00 3.58
400 401 9.376075 CAGATTGAGTAAAGAAGTGTATGTGAT 57.624 33.333 0.00 0.00 0.00 3.06
401 402 9.376075 AGATTGAGTAAAGAAGTGTATGTGATG 57.624 33.333 0.00 0.00 0.00 3.07
402 403 6.968131 TGAGTAAAGAAGTGTATGTGATGC 57.032 37.500 0.00 0.00 0.00 3.91
403 404 6.701340 TGAGTAAAGAAGTGTATGTGATGCT 58.299 36.000 0.00 0.00 0.00 3.79
404 405 6.591448 TGAGTAAAGAAGTGTATGTGATGCTG 59.409 38.462 0.00 0.00 0.00 4.41
405 406 5.877012 AGTAAAGAAGTGTATGTGATGCTGG 59.123 40.000 0.00 0.00 0.00 4.85
406 407 2.636830 AGAAGTGTATGTGATGCTGGC 58.363 47.619 0.00 0.00 0.00 4.85
407 408 2.026915 AGAAGTGTATGTGATGCTGGCA 60.027 45.455 0.00 0.00 0.00 4.92
408 409 2.723322 AGTGTATGTGATGCTGGCAT 57.277 45.000 7.86 7.86 39.69 4.40
409 410 3.008835 AGTGTATGTGATGCTGGCATT 57.991 42.857 9.52 0.00 36.70 3.56
410 411 2.686405 AGTGTATGTGATGCTGGCATTG 59.314 45.455 9.52 0.00 36.70 2.82
411 412 2.424601 GTGTATGTGATGCTGGCATTGT 59.575 45.455 9.52 0.12 36.70 2.71
412 413 3.090790 TGTATGTGATGCTGGCATTGTT 58.909 40.909 9.52 0.00 36.70 2.83
413 414 2.665649 ATGTGATGCTGGCATTGTTG 57.334 45.000 9.52 0.00 36.70 3.33
430 431 2.492090 GCACACGGCAACCAAACA 59.508 55.556 0.00 0.00 43.97 2.83
431 432 1.876263 GCACACGGCAACCAAACAC 60.876 57.895 0.00 0.00 43.97 3.32
432 433 1.585002 CACACGGCAACCAAACACG 60.585 57.895 0.00 0.00 0.00 4.49
433 434 2.653766 CACGGCAACCAAACACGC 60.654 61.111 0.00 0.00 0.00 5.34
434 435 3.894947 ACGGCAACCAAACACGCC 61.895 61.111 0.00 0.00 41.30 5.68
435 436 4.639171 CGGCAACCAAACACGCCC 62.639 66.667 0.00 0.00 41.71 6.13
436 437 3.223589 GGCAACCAAACACGCCCT 61.224 61.111 0.00 0.00 38.67 5.19
437 438 2.791868 GGCAACCAAACACGCCCTT 61.792 57.895 0.00 0.00 38.67 3.95
438 439 1.457009 GGCAACCAAACACGCCCTTA 61.457 55.000 0.00 0.00 38.67 2.69
439 440 0.039527 GCAACCAAACACGCCCTTAG 60.040 55.000 0.00 0.00 0.00 2.18
440 441 1.600023 CAACCAAACACGCCCTTAGA 58.400 50.000 0.00 0.00 0.00 2.10
441 442 1.950909 CAACCAAACACGCCCTTAGAA 59.049 47.619 0.00 0.00 0.00 2.10
442 443 2.351706 ACCAAACACGCCCTTAGAAA 57.648 45.000 0.00 0.00 0.00 2.52
443 444 1.951602 ACCAAACACGCCCTTAGAAAC 59.048 47.619 0.00 0.00 0.00 2.78
444 445 2.227194 CCAAACACGCCCTTAGAAACT 58.773 47.619 0.00 0.00 0.00 2.66
445 446 2.031157 CCAAACACGCCCTTAGAAACTG 60.031 50.000 0.00 0.00 0.00 3.16
446 447 2.616842 CAAACACGCCCTTAGAAACTGT 59.383 45.455 0.00 0.00 0.00 3.55
447 448 3.756933 AACACGCCCTTAGAAACTGTA 57.243 42.857 0.00 0.00 0.00 2.74
448 449 3.036075 ACACGCCCTTAGAAACTGTAC 57.964 47.619 0.00 0.00 0.00 2.90
449 450 2.631545 ACACGCCCTTAGAAACTGTACT 59.368 45.455 0.00 0.00 0.00 2.73
450 451 2.993899 CACGCCCTTAGAAACTGTACTG 59.006 50.000 0.00 0.00 0.00 2.74
451 452 2.895404 ACGCCCTTAGAAACTGTACTGA 59.105 45.455 6.77 0.00 0.00 3.41
452 453 3.514309 ACGCCCTTAGAAACTGTACTGAT 59.486 43.478 6.77 0.00 0.00 2.90
478 479 1.927174 GATCAAACTGACCCGATCGTG 59.073 52.381 15.09 4.94 0.00 4.35
485 486 1.153823 GACCCGATCGTGGTGACAG 60.154 63.158 26.38 5.07 44.46 3.51
487 488 0.970937 ACCCGATCGTGGTGACAGAT 60.971 55.000 22.40 1.78 44.46 2.90
495 496 0.610174 GTGGTGACAGATCCAGAGCA 59.390 55.000 0.00 0.00 44.46 4.26
517 518 7.295930 AGCACGTTAAATTAAACTAGCAGTTC 58.704 34.615 0.00 0.00 37.47 3.01
593 594 1.455849 CCACTCCAAAGACCAGGCA 59.544 57.895 0.00 0.00 0.00 4.75
600 601 0.886490 CAAAGACCAGGCAGCTCGTT 60.886 55.000 0.00 0.00 0.00 3.85
601 602 0.603975 AAAGACCAGGCAGCTCGTTC 60.604 55.000 0.00 0.00 0.00 3.95
602 603 2.771763 AAGACCAGGCAGCTCGTTCG 62.772 60.000 0.00 0.00 0.00 3.95
603 604 3.575351 GACCAGGCAGCTCGTTCGT 62.575 63.158 0.00 0.00 0.00 3.85
614 619 3.175240 CGTTCGTGAGGCTCTGCG 61.175 66.667 16.72 18.84 0.00 5.18
678 689 4.563184 GGATCGTATCAAACACTCACACTC 59.437 45.833 0.00 0.00 0.00 3.51
679 690 4.848562 TCGTATCAAACACTCACACTCT 57.151 40.909 0.00 0.00 0.00 3.24
680 691 4.795268 TCGTATCAAACACTCACACTCTC 58.205 43.478 0.00 0.00 0.00 3.20
681 692 3.604198 CGTATCAAACACTCACACTCTCG 59.396 47.826 0.00 0.00 0.00 4.04
682 693 1.852942 TCAAACACTCACACTCTCGC 58.147 50.000 0.00 0.00 0.00 5.03
683 694 1.409064 TCAAACACTCACACTCTCGCT 59.591 47.619 0.00 0.00 0.00 4.93
686 697 1.288439 CACTCACACTCTCGCTGCT 59.712 57.895 0.00 0.00 0.00 4.24
748 761 2.692368 GGCTGGACCCCATCTCCA 60.692 66.667 0.00 0.00 36.34 3.86
760 773 0.826715 CATCTCCACCACGTCCATCT 59.173 55.000 0.00 0.00 0.00 2.90
772 788 1.683707 TCCATCTCGGTGCAGCTCT 60.684 57.895 14.92 0.00 35.57 4.09
785 801 2.973899 GCTCTGAGCGGGACAAGA 59.026 61.111 14.68 0.00 0.00 3.02
836 852 3.357203 TCCTCCGGCTATATAGAGCAAG 58.643 50.000 20.32 13.13 44.76 4.01
877 893 3.549794 CCATCTCCAGATTCCTTTCACC 58.450 50.000 0.00 0.00 31.21 4.02
882 898 2.573462 TCCAGATTCCTTTCACCTGGAG 59.427 50.000 0.00 0.00 45.87 3.86
883 899 2.307098 CCAGATTCCTTTCACCTGGAGT 59.693 50.000 0.00 0.00 45.35 3.85
884 900 3.604582 CAGATTCCTTTCACCTGGAGTC 58.395 50.000 0.00 0.00 38.76 3.36
885 901 2.234908 AGATTCCTTTCACCTGGAGTCG 59.765 50.000 0.00 0.00 41.88 4.18
886 902 0.685097 TTCCTTTCACCTGGAGTCGG 59.315 55.000 0.00 0.00 33.46 4.79
887 903 0.178944 TCCTTTCACCTGGAGTCGGA 60.179 55.000 0.00 0.00 0.00 4.55
897 913 2.027561 CCTGGAGTCGGATAAACACCAA 60.028 50.000 0.00 0.00 37.01 3.67
898 914 3.370527 CCTGGAGTCGGATAAACACCAAT 60.371 47.826 0.00 0.00 37.01 3.16
899 915 3.869065 TGGAGTCGGATAAACACCAATC 58.131 45.455 0.00 0.00 34.93 2.67
900 916 3.262151 TGGAGTCGGATAAACACCAATCA 59.738 43.478 0.00 0.00 34.93 2.57
901 917 4.258543 GGAGTCGGATAAACACCAATCAA 58.741 43.478 0.00 0.00 0.00 2.57
902 918 4.698304 GGAGTCGGATAAACACCAATCAAA 59.302 41.667 0.00 0.00 0.00 2.69
903 919 5.182380 GGAGTCGGATAAACACCAATCAAAA 59.818 40.000 0.00 0.00 0.00 2.44
904 920 6.009115 AGTCGGATAAACACCAATCAAAAC 57.991 37.500 0.00 0.00 0.00 2.43
905 921 5.768164 AGTCGGATAAACACCAATCAAAACT 59.232 36.000 0.00 0.00 0.00 2.66
906 922 6.072673 AGTCGGATAAACACCAATCAAAACTC 60.073 38.462 0.00 0.00 0.00 3.01
907 923 5.182380 TCGGATAAACACCAATCAAAACTCC 59.818 40.000 0.00 0.00 0.00 3.85
908 924 5.399013 GGATAAACACCAATCAAAACTCCG 58.601 41.667 0.00 0.00 0.00 4.63
909 925 3.726291 AAACACCAATCAAAACTCCGG 57.274 42.857 0.00 0.00 0.00 5.14
910 926 2.358322 ACACCAATCAAAACTCCGGT 57.642 45.000 0.00 0.00 0.00 5.28
911 927 2.704725 CACCAATCAAAACTCCGGTG 57.295 50.000 0.00 0.00 38.11 4.94
912 928 0.958822 ACCAATCAAAACTCCGGTGC 59.041 50.000 0.00 0.00 0.00 5.01
913 929 1.247567 CCAATCAAAACTCCGGTGCT 58.752 50.000 0.00 0.00 0.00 4.40
914 930 2.224670 ACCAATCAAAACTCCGGTGCTA 60.225 45.455 0.00 0.00 0.00 3.49
915 931 2.161609 CCAATCAAAACTCCGGTGCTAC 59.838 50.000 0.00 0.00 0.00 3.58
916 932 3.074412 CAATCAAAACTCCGGTGCTACT 58.926 45.455 0.00 0.00 0.00 2.57
917 933 2.922740 TCAAAACTCCGGTGCTACTT 57.077 45.000 0.00 0.00 0.00 2.24
949 966 2.690497 GACCACAAGATCGATCTCCAGA 59.310 50.000 27.43 0.00 35.76 3.86
960 977 2.611292 CGATCTCCAGACCAAGATTTGC 59.389 50.000 0.00 0.00 32.43 3.68
963 980 4.478206 TCTCCAGACCAAGATTTGCTAG 57.522 45.455 0.00 0.00 0.00 3.42
964 981 2.941720 CTCCAGACCAAGATTTGCTAGC 59.058 50.000 8.10 8.10 0.00 3.42
967 984 2.094894 CAGACCAAGATTTGCTAGCACG 59.905 50.000 19.17 1.76 0.00 5.34
970 987 2.226437 ACCAAGATTTGCTAGCACGTTG 59.774 45.455 19.17 16.89 0.00 4.10
971 988 2.226437 CCAAGATTTGCTAGCACGTTGT 59.774 45.455 19.17 0.35 0.00 3.32
972 989 3.435327 CCAAGATTTGCTAGCACGTTGTA 59.565 43.478 19.17 0.00 0.00 2.41
973 990 4.436050 CCAAGATTTGCTAGCACGTTGTAG 60.436 45.833 19.17 5.08 0.00 2.74
978 995 1.144969 GCTAGCACGTTGTAGCACAA 58.855 50.000 17.35 0.00 41.21 3.33
993 1016 0.880278 CACAACACACCAGAGTCCGG 60.880 60.000 0.00 0.00 0.00 5.14
1239 1266 4.753662 TACCTCCTCGTGCCCGCT 62.754 66.667 0.00 0.00 0.00 5.52
1308 1335 4.722193 CTGGTGTCCGGCAAGAAT 57.278 55.556 0.00 0.00 0.00 2.40
1322 1349 0.471591 AAGAATGGTGGCAAGGGCAA 60.472 50.000 0.00 0.00 43.71 4.52
1386 1413 0.179073 CGAGCACCGAGGATGGAAAT 60.179 55.000 0.00 0.00 41.76 2.17
1485 1519 3.612247 GATCGATCATGGCCCCCGG 62.612 68.421 20.52 0.00 0.00 5.73
1508 1542 5.544562 GGCTGTAGGGTAGAATAGGAAATCT 59.455 44.000 0.00 0.00 0.00 2.40
1509 1543 6.459923 GCTGTAGGGTAGAATAGGAAATCTG 58.540 44.000 0.00 0.00 0.00 2.90
1600 1635 4.624024 AGGTATTCGTTTGACGTGTACATG 59.376 41.667 13.64 13.64 43.14 3.21
1640 1675 7.334858 TCAACTTATTTTGGAGCAAAAGGTTT 58.665 30.769 0.00 0.00 44.72 3.27
1690 1728 4.287845 ACCTAAATGTTACTCCCTCCGTTT 59.712 41.667 0.00 0.00 0.00 3.60
1691 1729 4.874396 CCTAAATGTTACTCCCTCCGTTTC 59.126 45.833 0.00 0.00 0.00 2.78
1692 1730 4.360951 AAATGTTACTCCCTCCGTTTCA 57.639 40.909 0.00 0.00 0.00 2.69
1693 1731 4.569719 AATGTTACTCCCTCCGTTTCAT 57.430 40.909 0.00 0.00 0.00 2.57
1694 1732 3.328382 TGTTACTCCCTCCGTTTCATG 57.672 47.619 0.00 0.00 0.00 3.07
1695 1733 2.901192 TGTTACTCCCTCCGTTTCATGA 59.099 45.455 0.00 0.00 0.00 3.07
1696 1734 3.517901 TGTTACTCCCTCCGTTTCATGAT 59.482 43.478 0.00 0.00 0.00 2.45
1697 1735 2.698855 ACTCCCTCCGTTTCATGATG 57.301 50.000 0.00 0.00 0.00 3.07
1698 1736 1.303309 CTCCCTCCGTTTCATGATGC 58.697 55.000 0.00 0.00 0.00 3.91
1699 1737 0.617935 TCCCTCCGTTTCATGATGCA 59.382 50.000 0.00 0.00 0.00 3.96
1700 1738 1.019673 CCCTCCGTTTCATGATGCAG 58.980 55.000 0.00 0.00 0.00 4.41
1701 1739 1.019673 CCTCCGTTTCATGATGCAGG 58.980 55.000 0.00 0.00 0.00 4.85
1749 1787 8.040132 TCCAACTTCACAAATTTTGATCAAGTT 58.960 29.630 15.81 18.56 37.56 2.66
1751 1789 9.480538 CAACTTCACAAATTTTGATCAAGTTTG 57.519 29.630 28.51 28.51 36.32 2.93
1781 1819 9.606631 AGAAAAACATTTACAACTAAAATGCCA 57.393 25.926 8.13 0.00 44.52 4.92
1784 1822 9.995957 AAAACATTTACAACTAAAATGCCAAAC 57.004 25.926 8.13 0.00 44.52 2.93
1785 1823 8.723942 AACATTTACAACTAAAATGCCAAACA 57.276 26.923 8.13 0.00 44.52 2.83
1786 1824 8.900983 ACATTTACAACTAAAATGCCAAACAT 57.099 26.923 8.13 0.00 44.52 2.71
1787 1825 9.988815 ACATTTACAACTAAAATGCCAAACATA 57.011 25.926 8.13 0.00 44.52 2.29
1792 1830 8.647143 ACAACTAAAATGCCAAACATATATGC 57.353 30.769 12.79 0.00 38.34 3.14
1793 1831 8.256605 ACAACTAAAATGCCAAACATATATGCA 58.743 29.630 12.79 4.93 38.34 3.96
1794 1832 9.263538 CAACTAAAATGCCAAACATATATGCAT 57.736 29.630 12.79 3.79 44.02 3.96
1795 1833 9.480053 AACTAAAATGCCAAACATATATGCATC 57.520 29.630 12.79 0.00 41.49 3.91
1796 1834 8.640651 ACTAAAATGCCAAACATATATGCATCA 58.359 29.630 12.79 4.73 41.49 3.07
1797 1835 9.647797 CTAAAATGCCAAACATATATGCATCAT 57.352 29.630 12.79 6.66 41.49 2.45
1799 1837 9.999660 AAAATGCCAAACATATATGCATCATAA 57.000 25.926 12.79 0.00 41.49 1.90
1800 1838 9.647797 AAATGCCAAACATATATGCATCATAAG 57.352 29.630 12.79 0.11 41.49 1.73
1801 1839 7.999450 TGCCAAACATATATGCATCATAAGA 57.001 32.000 12.79 0.00 29.74 2.10
1802 1840 8.584063 TGCCAAACATATATGCATCATAAGAT 57.416 30.769 12.79 0.00 29.74 2.40
1847 1886 9.646427 TGTTGGAAATATTAGCACATTTTTACC 57.354 29.630 0.00 0.00 0.00 2.85
1880 1921 3.494626 ACGAGTAAATGATAAGCATGGCG 59.505 43.478 0.00 0.00 37.28 5.69
1886 1927 6.710295 AGTAAATGATAAGCATGGCGAATACA 59.290 34.615 0.00 0.00 37.28 2.29
1932 1974 2.166459 AGCATGTGAGCACGTACAGTAT 59.834 45.455 0.00 0.00 36.85 2.12
1939 1981 7.506328 TGTGAGCACGTACAGTATATAGAAT 57.494 36.000 0.00 0.00 0.00 2.40
1964 2010 7.590279 TCGAAACATCTATGAATAGCATACGA 58.410 34.615 0.00 0.00 38.44 3.43
1975 2021 1.858091 AGCATACGACTAGCACATGC 58.142 50.000 9.86 9.86 41.78 4.06
1981 2027 0.179163 CGACTAGCACATGCACGAGA 60.179 55.000 6.64 0.00 45.16 4.04
2011 2057 3.640029 GGATAAACGAGTCATACCCTCCA 59.360 47.826 0.00 0.00 0.00 3.86
2017 2063 2.188817 GAGTCATACCCTCCAGTTGGT 58.811 52.381 0.00 0.00 38.69 3.67
2120 2166 1.522580 GAGTCGATGCAGGGGAAGC 60.523 63.158 0.00 0.00 0.00 3.86
2136 2191 4.148825 GCAGTGGCGGACGGAGAT 62.149 66.667 0.00 0.00 0.00 2.75
2184 2246 3.492337 AGACGCTCCCCAAAAACATTAA 58.508 40.909 0.00 0.00 0.00 1.40
2213 2275 1.667154 CTCGGGCAGGATCTCGAACA 61.667 60.000 0.00 0.00 0.00 3.18
2219 2281 2.365617 GGCAGGATCTCGAACAATAGGA 59.634 50.000 0.00 0.00 0.00 2.94
2226 2288 3.028850 TCTCGAACAATAGGATTCCGGT 58.971 45.455 0.00 0.00 0.00 5.28
2274 2336 4.203076 CGGTCGTCGGGATGGGTC 62.203 72.222 0.00 0.00 34.75 4.46
2275 2337 4.203076 GGTCGTCGGGATGGGTCG 62.203 72.222 0.00 0.00 0.00 4.79
2276 2338 4.867599 GTCGTCGGGATGGGTCGC 62.868 72.222 0.00 0.00 0.00 5.19
2291 2357 2.048222 CGCCGGAAGCACAGAGAA 60.048 61.111 5.05 0.00 44.04 2.87
2293 2359 1.227999 CGCCGGAAGCACAGAGAAAA 61.228 55.000 5.05 0.00 44.04 2.29
2305 2371 7.233389 AGCACAGAGAAAAGAACAGTAGATA 57.767 36.000 0.00 0.00 0.00 1.98
2315 2381 4.789807 AGAACAGTAGATAACGGCTAGGA 58.210 43.478 0.00 0.00 0.00 2.94
2368 2434 2.451191 TTCACTCCACTGGCCAGCA 61.451 57.895 33.06 15.76 0.00 4.41
2398 2469 2.306715 TAGCGGGTAGATGGGCCTGA 62.307 60.000 4.53 0.00 33.04 3.86
2430 2501 2.600122 GATCGAGTCCGCGAACAGCT 62.600 60.000 8.23 0.00 44.22 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.208686 CGTCGACCTAGCTGGGCC 62.209 72.222 17.38 3.63 42.31 5.80
2 3 4.208686 CCGTCGACCTAGCTGGGC 62.209 72.222 17.38 7.02 41.70 5.36
3 4 4.208686 GCCGTCGACCTAGCTGGG 62.209 72.222 15.72 15.72 41.11 4.45
4 5 4.554363 CGCCGTCGACCTAGCTGG 62.554 72.222 10.58 5.21 42.93 4.85
8 9 4.554363 CCAGCGCCGTCGACCTAG 62.554 72.222 10.58 2.10 38.10 3.02
22 23 2.821366 GACAGCCATGGTCGCCAG 60.821 66.667 14.67 0.00 36.75 4.85
27 28 1.227674 GGATCCGACAGCCATGGTC 60.228 63.158 14.67 5.80 0.00 4.02
28 29 2.911143 GGATCCGACAGCCATGGT 59.089 61.111 14.67 0.00 0.00 3.55
29 30 2.280389 CGGATCCGACAGCCATGG 60.280 66.667 30.62 7.63 42.83 3.66
30 31 2.280389 CCGGATCCGACAGCCATG 60.280 66.667 35.42 12.07 42.83 3.66
31 32 4.241555 GCCGGATCCGACAGCCAT 62.242 66.667 35.42 0.00 42.83 4.40
35 36 4.907034 CGACGCCGGATCCGACAG 62.907 72.222 35.42 25.14 42.83 3.51
52 53 4.554036 GAGGAGGTCGGCCATGGC 62.554 72.222 29.47 29.47 41.06 4.40
53 54 3.866582 GGAGGAGGTCGGCCATGG 61.867 72.222 9.71 7.63 37.19 3.66
54 55 3.866582 GGGAGGAGGTCGGCCATG 61.867 72.222 9.71 0.00 37.19 3.66
55 56 4.095400 AGGGAGGAGGTCGGCCAT 62.095 66.667 9.71 0.00 37.19 4.40
56 57 4.779733 GAGGGAGGAGGTCGGCCA 62.780 72.222 9.71 0.00 37.19 5.36
58 59 4.467107 AGGAGGGAGGAGGTCGGC 62.467 72.222 0.00 0.00 0.00 5.54
59 60 2.443016 CAGGAGGGAGGAGGTCGG 60.443 72.222 0.00 0.00 0.00 4.79
60 61 2.055042 CACAGGAGGGAGGAGGTCG 61.055 68.421 0.00 0.00 0.00 4.79
61 62 2.363172 GCACAGGAGGGAGGAGGTC 61.363 68.421 0.00 0.00 0.00 3.85
62 63 2.284995 GCACAGGAGGGAGGAGGT 60.285 66.667 0.00 0.00 0.00 3.85
63 64 1.614824 AAGCACAGGAGGGAGGAGG 60.615 63.158 0.00 0.00 0.00 4.30
64 65 1.621672 GGAAGCACAGGAGGGAGGAG 61.622 65.000 0.00 0.00 0.00 3.69
65 66 1.613630 GGAAGCACAGGAGGGAGGA 60.614 63.158 0.00 0.00 0.00 3.71
66 67 0.325671 TAGGAAGCACAGGAGGGAGG 60.326 60.000 0.00 0.00 0.00 4.30
67 68 0.827368 GTAGGAAGCACAGGAGGGAG 59.173 60.000 0.00 0.00 0.00 4.30
68 69 0.413832 AGTAGGAAGCACAGGAGGGA 59.586 55.000 0.00 0.00 0.00 4.20
69 70 2.035632 CTAGTAGGAAGCACAGGAGGG 58.964 57.143 0.00 0.00 0.00 4.30
70 71 2.035632 CCTAGTAGGAAGCACAGGAGG 58.964 57.143 11.09 0.00 37.67 4.30
71 72 2.691011 GACCTAGTAGGAAGCACAGGAG 59.309 54.545 23.50 0.00 37.67 3.69
72 73 2.736347 GACCTAGTAGGAAGCACAGGA 58.264 52.381 23.50 0.00 37.67 3.86
73 74 1.405821 CGACCTAGTAGGAAGCACAGG 59.594 57.143 23.50 0.00 37.67 4.00
74 75 1.202313 GCGACCTAGTAGGAAGCACAG 60.202 57.143 23.50 6.57 37.67 3.66
75 76 0.815734 GCGACCTAGTAGGAAGCACA 59.184 55.000 23.50 0.00 37.67 4.57
76 77 0.102663 GGCGACCTAGTAGGAAGCAC 59.897 60.000 28.33 19.30 40.82 4.40
77 78 0.323999 TGGCGACCTAGTAGGAAGCA 60.324 55.000 28.33 18.04 40.82 3.91
78 79 1.041437 ATGGCGACCTAGTAGGAAGC 58.959 55.000 23.50 23.33 37.67 3.86
79 80 1.341531 CCATGGCGACCTAGTAGGAAG 59.658 57.143 23.50 15.74 37.67 3.46
80 81 1.410004 CCATGGCGACCTAGTAGGAA 58.590 55.000 23.50 3.30 37.67 3.36
81 82 1.113517 GCCATGGCGACCTAGTAGGA 61.114 60.000 23.48 0.00 37.67 2.94
82 83 1.367840 GCCATGGCGACCTAGTAGG 59.632 63.158 23.48 15.09 42.49 3.18
83 84 1.367840 GGCCATGGCGACCTAGTAG 59.632 63.158 29.90 0.00 43.06 2.57
84 85 3.546009 GGCCATGGCGACCTAGTA 58.454 61.111 29.90 0.00 43.06 1.82
100 101 3.976701 ATGAACAAGGAGCCCGCGG 62.977 63.158 21.04 21.04 0.00 6.46
101 102 2.436646 ATGAACAAGGAGCCCGCG 60.437 61.111 0.00 0.00 0.00 6.46
102 103 2.409870 CCATGAACAAGGAGCCCGC 61.410 63.158 0.00 0.00 0.00 6.13
103 104 2.409870 GCCATGAACAAGGAGCCCG 61.410 63.158 0.00 0.00 0.00 6.13
104 105 2.409870 CGCCATGAACAAGGAGCCC 61.410 63.158 0.00 0.00 0.00 5.19
105 106 1.648467 GACGCCATGAACAAGGAGCC 61.648 60.000 0.00 0.00 0.00 4.70
106 107 1.648467 GGACGCCATGAACAAGGAGC 61.648 60.000 0.00 0.00 0.00 4.70
107 108 0.036010 AGGACGCCATGAACAAGGAG 60.036 55.000 0.00 0.00 0.00 3.69
108 109 0.321564 CAGGACGCCATGAACAAGGA 60.322 55.000 0.00 0.00 0.00 3.36
109 110 1.926511 GCAGGACGCCATGAACAAGG 61.927 60.000 0.00 0.00 32.94 3.61
110 111 0.957395 AGCAGGACGCCATGAACAAG 60.957 55.000 0.00 0.00 44.04 3.16
111 112 0.955428 GAGCAGGACGCCATGAACAA 60.955 55.000 0.00 0.00 44.04 2.83
112 113 1.375908 GAGCAGGACGCCATGAACA 60.376 57.895 0.00 0.00 44.04 3.18
113 114 2.109126 GGAGCAGGACGCCATGAAC 61.109 63.158 0.00 0.00 44.04 3.18
114 115 1.841302 AAGGAGCAGGACGCCATGAA 61.841 55.000 0.00 0.00 44.04 2.57
115 116 2.244117 GAAGGAGCAGGACGCCATGA 62.244 60.000 0.00 0.00 44.04 3.07
116 117 1.817099 GAAGGAGCAGGACGCCATG 60.817 63.158 0.00 0.00 44.04 3.66
117 118 2.586792 GAAGGAGCAGGACGCCAT 59.413 61.111 0.00 0.00 44.04 4.40
118 119 3.706373 GGAAGGAGCAGGACGCCA 61.706 66.667 0.00 0.00 44.04 5.69
119 120 3.378399 GAGGAAGGAGCAGGACGCC 62.378 68.421 0.00 0.00 44.04 5.68
120 121 2.185608 GAGGAAGGAGCAGGACGC 59.814 66.667 0.00 0.00 42.91 5.19
121 122 1.515020 CAGAGGAAGGAGCAGGACG 59.485 63.158 0.00 0.00 0.00 4.79
122 123 0.907230 ACCAGAGGAAGGAGCAGGAC 60.907 60.000 0.00 0.00 0.00 3.85
123 124 0.178891 AACCAGAGGAAGGAGCAGGA 60.179 55.000 0.00 0.00 0.00 3.86
124 125 0.695347 AAACCAGAGGAAGGAGCAGG 59.305 55.000 0.00 0.00 0.00 4.85
125 126 1.674221 CGAAACCAGAGGAAGGAGCAG 60.674 57.143 0.00 0.00 0.00 4.24
126 127 0.321671 CGAAACCAGAGGAAGGAGCA 59.678 55.000 0.00 0.00 0.00 4.26
127 128 0.321996 ACGAAACCAGAGGAAGGAGC 59.678 55.000 0.00 0.00 0.00 4.70
128 129 2.417515 GCTACGAAACCAGAGGAAGGAG 60.418 54.545 0.00 0.00 0.00 3.69
129 130 1.549170 GCTACGAAACCAGAGGAAGGA 59.451 52.381 0.00 0.00 0.00 3.36
130 131 1.550976 AGCTACGAAACCAGAGGAAGG 59.449 52.381 0.00 0.00 0.00 3.46
131 132 3.254892 GAAGCTACGAAACCAGAGGAAG 58.745 50.000 0.00 0.00 0.00 3.46
132 133 2.631062 TGAAGCTACGAAACCAGAGGAA 59.369 45.455 0.00 0.00 0.00 3.36
133 134 2.244695 TGAAGCTACGAAACCAGAGGA 58.755 47.619 0.00 0.00 0.00 3.71
134 135 2.743636 TGAAGCTACGAAACCAGAGG 57.256 50.000 0.00 0.00 0.00 3.69
135 136 4.109050 GAGATGAAGCTACGAAACCAGAG 58.891 47.826 0.00 0.00 0.00 3.35
136 137 3.119101 GGAGATGAAGCTACGAAACCAGA 60.119 47.826 0.00 0.00 0.00 3.86
137 138 3.190874 GGAGATGAAGCTACGAAACCAG 58.809 50.000 0.00 0.00 0.00 4.00
138 139 2.093658 GGGAGATGAAGCTACGAAACCA 60.094 50.000 0.00 0.00 0.00 3.67
139 140 2.552031 GGGAGATGAAGCTACGAAACC 58.448 52.381 0.00 0.00 0.00 3.27
140 141 2.552031 GGGGAGATGAAGCTACGAAAC 58.448 52.381 0.00 0.00 0.00 2.78
141 142 1.485066 GGGGGAGATGAAGCTACGAAA 59.515 52.381 0.00 0.00 0.00 3.46
142 143 1.120530 GGGGGAGATGAAGCTACGAA 58.879 55.000 0.00 0.00 0.00 3.85
143 144 0.261991 AGGGGGAGATGAAGCTACGA 59.738 55.000 0.00 0.00 0.00 3.43
144 145 1.123928 AAGGGGGAGATGAAGCTACG 58.876 55.000 0.00 0.00 0.00 3.51
145 146 2.774809 AGAAAGGGGGAGATGAAGCTAC 59.225 50.000 0.00 0.00 0.00 3.58
146 147 3.041946 GAGAAAGGGGGAGATGAAGCTA 58.958 50.000 0.00 0.00 0.00 3.32
147 148 1.843206 GAGAAAGGGGGAGATGAAGCT 59.157 52.381 0.00 0.00 0.00 3.74
148 149 1.843206 AGAGAAAGGGGGAGATGAAGC 59.157 52.381 0.00 0.00 0.00 3.86
149 150 4.294347 AGTAGAGAAAGGGGGAGATGAAG 58.706 47.826 0.00 0.00 0.00 3.02
150 151 4.354208 AGTAGAGAAAGGGGGAGATGAA 57.646 45.455 0.00 0.00 0.00 2.57
151 152 4.693058 GCTAGTAGAGAAAGGGGGAGATGA 60.693 50.000 0.00 0.00 0.00 2.92
152 153 3.576550 GCTAGTAGAGAAAGGGGGAGATG 59.423 52.174 0.00 0.00 0.00 2.90
153 154 3.469389 AGCTAGTAGAGAAAGGGGGAGAT 59.531 47.826 0.00 0.00 0.00 2.75
154 155 2.860041 AGCTAGTAGAGAAAGGGGGAGA 59.140 50.000 0.00 0.00 0.00 3.71
155 156 3.117284 AGAGCTAGTAGAGAAAGGGGGAG 60.117 52.174 0.00 0.00 0.00 4.30
156 157 2.860041 AGAGCTAGTAGAGAAAGGGGGA 59.140 50.000 0.00 0.00 0.00 4.81
157 158 3.322191 AGAGCTAGTAGAGAAAGGGGG 57.678 52.381 0.00 0.00 0.00 5.40
158 159 5.069383 GGTTAAGAGCTAGTAGAGAAAGGGG 59.931 48.000 0.00 0.00 0.00 4.79
159 160 5.657302 TGGTTAAGAGCTAGTAGAGAAAGGG 59.343 44.000 0.00 0.00 0.00 3.95
160 161 6.777213 TGGTTAAGAGCTAGTAGAGAAAGG 57.223 41.667 0.00 0.00 0.00 3.11
161 162 7.704472 CACATGGTTAAGAGCTAGTAGAGAAAG 59.296 40.741 0.00 0.00 0.00 2.62
162 163 7.178628 ACACATGGTTAAGAGCTAGTAGAGAAA 59.821 37.037 0.00 0.00 0.00 2.52
163 164 6.663953 ACACATGGTTAAGAGCTAGTAGAGAA 59.336 38.462 0.00 0.00 0.00 2.87
164 165 6.095580 CACACATGGTTAAGAGCTAGTAGAGA 59.904 42.308 0.00 0.00 0.00 3.10
165 166 6.269315 CACACATGGTTAAGAGCTAGTAGAG 58.731 44.000 0.00 0.00 0.00 2.43
166 167 5.394224 GCACACATGGTTAAGAGCTAGTAGA 60.394 44.000 0.00 0.00 0.00 2.59
167 168 4.806247 GCACACATGGTTAAGAGCTAGTAG 59.194 45.833 0.00 0.00 0.00 2.57
168 169 4.466370 AGCACACATGGTTAAGAGCTAGTA 59.534 41.667 0.00 0.00 30.39 1.82
169 170 3.261897 AGCACACATGGTTAAGAGCTAGT 59.738 43.478 0.00 0.00 30.39 2.57
170 171 3.866651 AGCACACATGGTTAAGAGCTAG 58.133 45.455 0.00 0.00 30.39 3.42
171 172 3.981071 AGCACACATGGTTAAGAGCTA 57.019 42.857 0.00 0.00 30.39 3.32
172 173 2.867109 AGCACACATGGTTAAGAGCT 57.133 45.000 0.00 0.00 30.39 4.09
173 174 4.003648 ACTTAGCACACATGGTTAAGAGC 58.996 43.478 9.80 0.00 37.77 4.09
174 175 4.142816 GCACTTAGCACACATGGTTAAGAG 60.143 45.833 9.80 4.86 44.79 2.85
175 176 3.751175 GCACTTAGCACACATGGTTAAGA 59.249 43.478 9.80 0.00 44.79 2.10
176 177 4.083581 GCACTTAGCACACATGGTTAAG 57.916 45.455 0.00 0.31 44.79 1.85
189 190 2.003301 GACCTAGCACTTGCACTTAGC 58.997 52.381 3.62 0.00 45.16 3.09
190 191 3.601443 AGACCTAGCACTTGCACTTAG 57.399 47.619 3.62 0.00 45.16 2.18
191 192 5.477607 TTAAGACCTAGCACTTGCACTTA 57.522 39.130 3.62 3.18 45.16 2.24
192 193 2.938956 AAGACCTAGCACTTGCACTT 57.061 45.000 3.62 0.00 45.16 3.16
193 194 4.020218 TGATTAAGACCTAGCACTTGCACT 60.020 41.667 3.62 0.00 45.16 4.40
194 195 4.253685 TGATTAAGACCTAGCACTTGCAC 58.746 43.478 3.62 0.00 45.16 4.57
195 196 4.551702 TGATTAAGACCTAGCACTTGCA 57.448 40.909 3.62 0.00 45.16 4.08
196 197 6.284459 AGTATGATTAAGACCTAGCACTTGC 58.716 40.000 9.04 0.00 42.49 4.01
197 198 6.926272 GGAGTATGATTAAGACCTAGCACTTG 59.074 42.308 9.04 0.00 0.00 3.16
198 199 6.611642 TGGAGTATGATTAAGACCTAGCACTT 59.388 38.462 5.31 5.31 0.00 3.16
199 200 6.136857 TGGAGTATGATTAAGACCTAGCACT 58.863 40.000 0.00 0.00 0.00 4.40
200 201 6.406692 TGGAGTATGATTAAGACCTAGCAC 57.593 41.667 0.00 0.00 0.00 4.40
201 202 6.519043 GCATGGAGTATGATTAAGACCTAGCA 60.519 42.308 0.00 0.00 39.21 3.49
202 203 5.872070 GCATGGAGTATGATTAAGACCTAGC 59.128 44.000 0.00 0.00 39.21 3.42
203 204 6.096036 CGCATGGAGTATGATTAAGACCTAG 58.904 44.000 0.00 0.00 39.21 3.02
204 205 5.047306 CCGCATGGAGTATGATTAAGACCTA 60.047 44.000 0.00 0.00 39.21 3.08
205 206 4.262635 CCGCATGGAGTATGATTAAGACCT 60.263 45.833 0.00 0.00 39.21 3.85
206 207 3.997021 CCGCATGGAGTATGATTAAGACC 59.003 47.826 0.00 0.00 39.21 3.85
207 208 4.883083 TCCGCATGGAGTATGATTAAGAC 58.117 43.478 0.00 0.00 40.17 3.01
220 221 0.466372 TGTTTGGTTGTCCGCATGGA 60.466 50.000 0.00 0.00 43.88 3.41
221 222 0.039256 CTGTTTGGTTGTCCGCATGG 60.039 55.000 0.00 0.00 36.30 3.66
222 223 0.664166 GCTGTTTGGTTGTCCGCATG 60.664 55.000 0.00 0.00 36.30 4.06
223 224 1.659794 GCTGTTTGGTTGTCCGCAT 59.340 52.632 0.00 0.00 36.30 4.73
224 225 2.829206 CGCTGTTTGGTTGTCCGCA 61.829 57.895 0.00 0.00 36.30 5.69
225 226 2.051345 CGCTGTTTGGTTGTCCGC 60.051 61.111 0.00 0.00 36.30 5.54
226 227 1.010125 CACGCTGTTTGGTTGTCCG 60.010 57.895 0.00 0.00 36.30 4.79
227 228 1.263217 CTACACGCTGTTTGGTTGTCC 59.737 52.381 0.00 0.00 0.00 4.02
228 229 1.937899 ACTACACGCTGTTTGGTTGTC 59.062 47.619 0.00 0.00 0.00 3.18
229 230 2.032680 ACTACACGCTGTTTGGTTGT 57.967 45.000 0.00 0.00 0.00 3.32
230 231 2.715268 CAACTACACGCTGTTTGGTTG 58.285 47.619 8.66 8.66 32.60 3.77
231 232 1.064952 GCAACTACACGCTGTTTGGTT 59.935 47.619 0.00 0.00 0.00 3.67
232 233 0.661020 GCAACTACACGCTGTTTGGT 59.339 50.000 0.00 0.00 0.00 3.67
233 234 0.660488 TGCAACTACACGCTGTTTGG 59.340 50.000 0.00 0.00 0.00 3.28
234 235 2.309693 CATGCAACTACACGCTGTTTG 58.690 47.619 0.00 0.00 0.00 2.93
235 236 1.334960 GCATGCAACTACACGCTGTTT 60.335 47.619 14.21 0.00 0.00 2.83
236 237 0.238289 GCATGCAACTACACGCTGTT 59.762 50.000 14.21 0.00 0.00 3.16
237 238 1.868997 GCATGCAACTACACGCTGT 59.131 52.632 14.21 0.00 0.00 4.40
238 239 1.225827 CGCATGCAACTACACGCTG 60.226 57.895 19.57 0.00 0.00 5.18
239 240 3.027170 GCGCATGCAACTACACGCT 62.027 57.895 19.57 0.00 42.81 5.07
240 241 2.574212 GCGCATGCAACTACACGC 60.574 61.111 19.57 6.33 42.15 5.34
241 242 2.098298 GGCGCATGCAACTACACG 59.902 61.111 19.57 0.00 45.35 4.49
242 243 2.098298 CGGCGCATGCAACTACAC 59.902 61.111 19.57 0.00 45.35 2.90
243 244 3.798650 GCGGCGCATGCAACTACA 61.799 61.111 29.21 0.00 45.35 2.74
244 245 4.868900 CGCGGCGCATGCAACTAC 62.869 66.667 32.61 1.45 45.35 2.73
256 257 3.895102 TTGCTTGCATTGTCGCGGC 62.895 57.895 2.29 2.29 34.99 6.53
257 258 2.082366 GTTGCTTGCATTGTCGCGG 61.082 57.895 6.13 0.00 33.35 6.46
258 259 2.082366 GGTTGCTTGCATTGTCGCG 61.082 57.895 0.00 0.00 33.35 5.87
259 260 0.597118 TTGGTTGCTTGCATTGTCGC 60.597 50.000 0.00 0.00 0.00 5.19
260 261 1.522258 GTTTGGTTGCTTGCATTGTCG 59.478 47.619 0.00 0.00 0.00 4.35
261 262 2.548875 TGTTTGGTTGCTTGCATTGTC 58.451 42.857 0.00 0.00 0.00 3.18
262 263 2.677337 GTTGTTTGGTTGCTTGCATTGT 59.323 40.909 0.00 0.00 0.00 2.71
263 264 2.285718 CGTTGTTTGGTTGCTTGCATTG 60.286 45.455 0.00 0.00 0.00 2.82
264 265 1.932511 CGTTGTTTGGTTGCTTGCATT 59.067 42.857 0.00 0.00 0.00 3.56
265 266 1.134848 ACGTTGTTTGGTTGCTTGCAT 60.135 42.857 0.00 0.00 0.00 3.96
266 267 0.244994 ACGTTGTTTGGTTGCTTGCA 59.755 45.000 0.00 0.00 0.00 4.08
267 268 0.644843 CACGTTGTTTGGTTGCTTGC 59.355 50.000 0.00 0.00 0.00 4.01
268 269 0.644843 GCACGTTGTTTGGTTGCTTG 59.355 50.000 0.00 0.00 0.00 4.01
269 270 0.459411 GGCACGTTGTTTGGTTGCTT 60.459 50.000 0.00 0.00 0.00 3.91
270 271 1.140804 GGCACGTTGTTTGGTTGCT 59.859 52.632 0.00 0.00 0.00 3.91
271 272 0.737715 TTGGCACGTTGTTTGGTTGC 60.738 50.000 0.00 0.00 0.00 4.17
272 273 1.658095 CTTTGGCACGTTGTTTGGTTG 59.342 47.619 0.00 0.00 0.00 3.77
273 274 1.273886 ACTTTGGCACGTTGTTTGGTT 59.726 42.857 0.00 0.00 0.00 3.67
274 275 0.892063 ACTTTGGCACGTTGTTTGGT 59.108 45.000 0.00 0.00 0.00 3.67
275 276 1.658095 CAACTTTGGCACGTTGTTTGG 59.342 47.619 16.55 0.00 36.61 3.28
276 277 2.600731 TCAACTTTGGCACGTTGTTTG 58.399 42.857 21.28 6.47 40.88 2.93
277 278 3.518634 ATCAACTTTGGCACGTTGTTT 57.481 38.095 21.28 12.03 40.88 2.83
278 279 3.518634 AATCAACTTTGGCACGTTGTT 57.481 38.095 21.28 14.18 40.88 2.83
279 280 3.443976 GAAATCAACTTTGGCACGTTGT 58.556 40.909 21.28 11.06 40.88 3.32
280 281 2.794350 GGAAATCAACTTTGGCACGTTG 59.206 45.455 17.99 17.99 41.30 4.10
281 282 2.693074 AGGAAATCAACTTTGGCACGTT 59.307 40.909 0.00 0.00 0.00 3.99
282 283 2.306847 AGGAAATCAACTTTGGCACGT 58.693 42.857 0.00 0.00 0.00 4.49
283 284 4.497473 TTAGGAAATCAACTTTGGCACG 57.503 40.909 0.00 0.00 0.00 5.34
284 285 4.627035 GCATTAGGAAATCAACTTTGGCAC 59.373 41.667 0.00 0.00 0.00 5.01
285 286 4.282957 TGCATTAGGAAATCAACTTTGGCA 59.717 37.500 0.00 0.00 0.00 4.92
286 287 4.819769 TGCATTAGGAAATCAACTTTGGC 58.180 39.130 0.00 0.00 0.00 4.52
301 302 4.392047 TGCATATGGACTTCCTGCATTAG 58.608 43.478 4.56 0.00 39.03 1.73
302 303 4.436113 TGCATATGGACTTCCTGCATTA 57.564 40.909 4.56 0.00 39.03 1.90
303 304 3.301794 TGCATATGGACTTCCTGCATT 57.698 42.857 4.56 0.00 39.03 3.56
304 305 3.220110 CTTGCATATGGACTTCCTGCAT 58.780 45.455 10.53 0.00 42.05 3.96
305 306 2.646930 CTTGCATATGGACTTCCTGCA 58.353 47.619 4.56 6.58 41.19 4.41
306 307 1.336125 GCTTGCATATGGACTTCCTGC 59.664 52.381 4.56 0.00 35.85 4.85
307 308 2.646930 TGCTTGCATATGGACTTCCTG 58.353 47.619 4.56 0.00 36.82 3.86
308 309 3.019564 GTTGCTTGCATATGGACTTCCT 58.980 45.455 4.56 0.00 36.82 3.36
309 310 2.099756 GGTTGCTTGCATATGGACTTCC 59.900 50.000 4.56 0.00 0.00 3.46
310 311 2.754552 TGGTTGCTTGCATATGGACTTC 59.245 45.455 4.56 0.00 0.00 3.01
311 312 2.806434 TGGTTGCTTGCATATGGACTT 58.194 42.857 4.56 0.00 0.00 3.01
312 313 2.512692 TGGTTGCTTGCATATGGACT 57.487 45.000 4.56 0.00 0.00 3.85
313 314 3.253230 GTTTGGTTGCTTGCATATGGAC 58.747 45.455 4.56 0.00 0.00 4.02
314 315 2.896044 TGTTTGGTTGCTTGCATATGGA 59.104 40.909 4.56 0.00 0.00 3.41
315 316 3.316071 TGTTTGGTTGCTTGCATATGG 57.684 42.857 4.56 0.00 0.00 2.74
316 317 4.309099 AGTTGTTTGGTTGCTTGCATATG 58.691 39.130 0.00 0.00 0.00 1.78
317 318 4.559153 GAGTTGTTTGGTTGCTTGCATAT 58.441 39.130 0.00 0.00 0.00 1.78
318 319 3.549827 CGAGTTGTTTGGTTGCTTGCATA 60.550 43.478 0.00 0.00 0.00 3.14
319 320 2.799207 CGAGTTGTTTGGTTGCTTGCAT 60.799 45.455 0.00 0.00 0.00 3.96
320 321 1.468908 CGAGTTGTTTGGTTGCTTGCA 60.469 47.619 0.00 0.00 0.00 4.08
321 322 1.199624 CGAGTTGTTTGGTTGCTTGC 58.800 50.000 0.00 0.00 0.00 4.01
322 323 1.199624 GCGAGTTGTTTGGTTGCTTG 58.800 50.000 0.00 0.00 0.00 4.01
323 324 0.814457 TGCGAGTTGTTTGGTTGCTT 59.186 45.000 0.00 0.00 0.00 3.91
324 325 0.381801 CTGCGAGTTGTTTGGTTGCT 59.618 50.000 0.00 0.00 0.00 3.91
325 326 0.380378 TCTGCGAGTTGTTTGGTTGC 59.620 50.000 0.00 0.00 0.00 4.17
326 327 2.033299 ACATCTGCGAGTTGTTTGGTTG 59.967 45.455 0.00 0.00 0.00 3.77
327 328 2.290641 GACATCTGCGAGTTGTTTGGTT 59.709 45.455 0.00 0.00 29.00 3.67
328 329 1.873591 GACATCTGCGAGTTGTTTGGT 59.126 47.619 0.00 0.00 29.00 3.67
329 330 1.136252 CGACATCTGCGAGTTGTTTGG 60.136 52.381 0.00 0.00 29.00 3.28
330 331 1.722751 GCGACATCTGCGAGTTGTTTG 60.723 52.381 0.00 0.00 29.00 2.93
331 332 0.512952 GCGACATCTGCGAGTTGTTT 59.487 50.000 0.00 0.00 29.00 2.83
332 333 0.599991 TGCGACATCTGCGAGTTGTT 60.600 50.000 0.00 0.00 29.00 2.83
333 334 0.390340 ATGCGACATCTGCGAGTTGT 60.390 50.000 0.00 0.00 31.33 3.32
334 335 1.559831 TATGCGACATCTGCGAGTTG 58.440 50.000 0.00 0.00 34.24 3.16
335 336 2.130395 CATATGCGACATCTGCGAGTT 58.870 47.619 0.00 0.00 34.24 3.01
336 337 1.338020 TCATATGCGACATCTGCGAGT 59.662 47.619 0.00 0.00 34.24 4.18
337 338 1.984297 CTCATATGCGACATCTGCGAG 59.016 52.381 0.00 0.00 34.24 5.03
338 339 1.336240 CCTCATATGCGACATCTGCGA 60.336 52.381 0.00 0.00 34.24 5.10
339 340 1.066136 CCTCATATGCGACATCTGCG 58.934 55.000 0.00 0.00 34.24 5.18
340 341 0.795085 GCCTCATATGCGACATCTGC 59.205 55.000 0.00 0.00 0.00 4.26
341 342 2.452295 AGCCTCATATGCGACATCTG 57.548 50.000 0.00 0.00 0.00 2.90
342 343 4.815533 AATAGCCTCATATGCGACATCT 57.184 40.909 0.00 0.00 0.00 2.90
343 344 5.869753 AAAATAGCCTCATATGCGACATC 57.130 39.130 0.00 0.00 0.00 3.06
363 364 8.746052 TCTTTACTCAATCTGGTTCTGAAAAA 57.254 30.769 0.00 0.00 0.00 1.94
364 365 8.746052 TTCTTTACTCAATCTGGTTCTGAAAA 57.254 30.769 0.00 0.00 0.00 2.29
365 366 7.993183 ACTTCTTTACTCAATCTGGTTCTGAAA 59.007 33.333 0.00 0.00 0.00 2.69
366 367 7.442364 CACTTCTTTACTCAATCTGGTTCTGAA 59.558 37.037 0.00 0.00 0.00 3.02
367 368 6.931281 CACTTCTTTACTCAATCTGGTTCTGA 59.069 38.462 0.00 0.00 0.00 3.27
368 369 6.708054 ACACTTCTTTACTCAATCTGGTTCTG 59.292 38.462 0.00 0.00 0.00 3.02
369 370 6.831976 ACACTTCTTTACTCAATCTGGTTCT 58.168 36.000 0.00 0.00 0.00 3.01
370 371 8.660373 CATACACTTCTTTACTCAATCTGGTTC 58.340 37.037 0.00 0.00 0.00 3.62
371 372 8.157476 ACATACACTTCTTTACTCAATCTGGTT 58.843 33.333 0.00 0.00 0.00 3.67
372 373 7.604164 CACATACACTTCTTTACTCAATCTGGT 59.396 37.037 0.00 0.00 0.00 4.00
373 374 7.819415 TCACATACACTTCTTTACTCAATCTGG 59.181 37.037 0.00 0.00 0.00 3.86
374 375 8.763049 TCACATACACTTCTTTACTCAATCTG 57.237 34.615 0.00 0.00 0.00 2.90
375 376 9.376075 CATCACATACACTTCTTTACTCAATCT 57.624 33.333 0.00 0.00 0.00 2.40
376 377 8.119226 GCATCACATACACTTCTTTACTCAATC 58.881 37.037 0.00 0.00 0.00 2.67
377 378 7.826252 AGCATCACATACACTTCTTTACTCAAT 59.174 33.333 0.00 0.00 0.00 2.57
378 379 7.118245 CAGCATCACATACACTTCTTTACTCAA 59.882 37.037 0.00 0.00 0.00 3.02
379 380 6.591448 CAGCATCACATACACTTCTTTACTCA 59.409 38.462 0.00 0.00 0.00 3.41
380 381 6.036517 CCAGCATCACATACACTTCTTTACTC 59.963 42.308 0.00 0.00 0.00 2.59
381 382 5.877012 CCAGCATCACATACACTTCTTTACT 59.123 40.000 0.00 0.00 0.00 2.24
382 383 5.447818 GCCAGCATCACATACACTTCTTTAC 60.448 44.000 0.00 0.00 0.00 2.01
383 384 4.635765 GCCAGCATCACATACACTTCTTTA 59.364 41.667 0.00 0.00 0.00 1.85
384 385 3.441572 GCCAGCATCACATACACTTCTTT 59.558 43.478 0.00 0.00 0.00 2.52
385 386 3.012518 GCCAGCATCACATACACTTCTT 58.987 45.455 0.00 0.00 0.00 2.52
386 387 2.026915 TGCCAGCATCACATACACTTCT 60.027 45.455 0.00 0.00 0.00 2.85
387 388 2.358957 TGCCAGCATCACATACACTTC 58.641 47.619 0.00 0.00 0.00 3.01
388 389 2.495155 TGCCAGCATCACATACACTT 57.505 45.000 0.00 0.00 0.00 3.16
389 390 2.686405 CAATGCCAGCATCACATACACT 59.314 45.455 5.44 0.00 35.31 3.55
390 391 2.424601 ACAATGCCAGCATCACATACAC 59.575 45.455 5.44 0.00 35.31 2.90
391 392 2.725637 ACAATGCCAGCATCACATACA 58.274 42.857 5.44 0.00 35.31 2.29
392 393 3.441163 CAACAATGCCAGCATCACATAC 58.559 45.455 5.44 0.00 35.31 2.39
393 394 3.786516 CAACAATGCCAGCATCACATA 57.213 42.857 5.44 0.00 35.31 2.29
394 395 2.665649 CAACAATGCCAGCATCACAT 57.334 45.000 5.44 0.00 35.31 3.21
413 414 1.876263 GTGTTTGGTTGCCGTGTGC 60.876 57.895 0.00 0.00 41.77 4.57
414 415 1.585002 CGTGTTTGGTTGCCGTGTG 60.585 57.895 0.00 0.00 0.00 3.82
415 416 2.795297 CGTGTTTGGTTGCCGTGT 59.205 55.556 0.00 0.00 0.00 4.49
416 417 2.653766 GCGTGTTTGGTTGCCGTG 60.654 61.111 0.00 0.00 0.00 4.94
417 418 3.894947 GGCGTGTTTGGTTGCCGT 61.895 61.111 0.00 0.00 37.81 5.68
419 420 1.457009 TAAGGGCGTGTTTGGTTGCC 61.457 55.000 0.00 0.00 46.82 4.52
420 421 0.039527 CTAAGGGCGTGTTTGGTTGC 60.040 55.000 0.00 0.00 0.00 4.17
421 422 1.600023 TCTAAGGGCGTGTTTGGTTG 58.400 50.000 0.00 0.00 0.00 3.77
422 423 2.351706 TTCTAAGGGCGTGTTTGGTT 57.648 45.000 0.00 0.00 0.00 3.67
423 424 1.951602 GTTTCTAAGGGCGTGTTTGGT 59.048 47.619 0.00 0.00 0.00 3.67
424 425 2.031157 CAGTTTCTAAGGGCGTGTTTGG 60.031 50.000 0.00 0.00 0.00 3.28
425 426 2.616842 ACAGTTTCTAAGGGCGTGTTTG 59.383 45.455 0.00 0.00 0.00 2.93
426 427 2.927028 ACAGTTTCTAAGGGCGTGTTT 58.073 42.857 0.00 0.00 0.00 2.83
427 428 2.632987 ACAGTTTCTAAGGGCGTGTT 57.367 45.000 0.00 0.00 0.00 3.32
428 429 2.631545 AGTACAGTTTCTAAGGGCGTGT 59.368 45.455 0.00 0.00 0.00 4.49
429 430 2.993899 CAGTACAGTTTCTAAGGGCGTG 59.006 50.000 0.00 0.00 0.00 5.34
430 431 2.895404 TCAGTACAGTTTCTAAGGGCGT 59.105 45.455 0.00 0.00 0.00 5.68
431 432 3.587797 TCAGTACAGTTTCTAAGGGCG 57.412 47.619 0.00 0.00 0.00 6.13
432 433 5.086104 TCATCAGTACAGTTTCTAAGGGC 57.914 43.478 0.00 0.00 0.00 5.19
433 434 5.582665 GCTTCATCAGTACAGTTTCTAAGGG 59.417 44.000 0.00 0.00 0.00 3.95
434 435 5.289675 CGCTTCATCAGTACAGTTTCTAAGG 59.710 44.000 0.00 0.00 0.00 2.69
435 436 6.093404 TCGCTTCATCAGTACAGTTTCTAAG 58.907 40.000 0.00 0.00 0.00 2.18
436 437 6.020971 TCGCTTCATCAGTACAGTTTCTAA 57.979 37.500 0.00 0.00 0.00 2.10
437 438 5.638596 TCGCTTCATCAGTACAGTTTCTA 57.361 39.130 0.00 0.00 0.00 2.10
438 439 4.521130 TCGCTTCATCAGTACAGTTTCT 57.479 40.909 0.00 0.00 0.00 2.52
439 440 4.864806 TGATCGCTTCATCAGTACAGTTTC 59.135 41.667 0.00 0.00 0.00 2.78
440 441 4.820897 TGATCGCTTCATCAGTACAGTTT 58.179 39.130 0.00 0.00 0.00 2.66
441 442 4.456280 TGATCGCTTCATCAGTACAGTT 57.544 40.909 0.00 0.00 0.00 3.16
442 443 4.456280 TTGATCGCTTCATCAGTACAGT 57.544 40.909 0.00 0.00 34.22 3.55
443 444 4.867047 AGTTTGATCGCTTCATCAGTACAG 59.133 41.667 0.00 0.00 34.22 2.74
444 445 4.627035 CAGTTTGATCGCTTCATCAGTACA 59.373 41.667 0.00 0.00 34.22 2.90
445 446 4.864806 TCAGTTTGATCGCTTCATCAGTAC 59.135 41.667 0.00 0.00 34.22 2.73
446 447 4.864806 GTCAGTTTGATCGCTTCATCAGTA 59.135 41.667 0.00 0.00 34.22 2.74
447 448 3.681897 GTCAGTTTGATCGCTTCATCAGT 59.318 43.478 0.00 0.00 34.22 3.41
448 449 3.063180 GGTCAGTTTGATCGCTTCATCAG 59.937 47.826 0.00 0.00 34.22 2.90
449 450 3.002791 GGTCAGTTTGATCGCTTCATCA 58.997 45.455 0.00 0.00 33.34 3.07
450 451 2.352960 GGGTCAGTTTGATCGCTTCATC 59.647 50.000 0.00 0.00 33.34 2.92
451 452 2.359900 GGGTCAGTTTGATCGCTTCAT 58.640 47.619 0.00 0.00 33.34 2.57
452 453 1.808411 GGGTCAGTTTGATCGCTTCA 58.192 50.000 0.00 0.00 0.00 3.02
478 479 0.459237 CGTGCTCTGGATCTGTCACC 60.459 60.000 0.00 0.00 0.00 4.02
485 486 7.073342 AGTTTAATTTAACGTGCTCTGGATC 57.927 36.000 1.93 0.00 33.26 3.36
487 488 6.091713 GCTAGTTTAATTTAACGTGCTCTGGA 59.908 38.462 15.20 0.00 33.26 3.86
495 496 8.614346 TGTTGAACTGCTAGTTTAATTTAACGT 58.386 29.630 1.93 0.00 38.80 3.99
593 594 1.974343 AGAGCCTCACGAACGAGCT 60.974 57.895 0.14 0.00 0.00 4.09
614 619 2.326550 CACGTCAACACAACGGGC 59.673 61.111 0.52 0.00 44.21 6.13
619 624 1.716760 GCCGAACACGTCAACACAA 59.283 52.632 0.00 0.00 0.00 3.33
620 625 2.518312 CGCCGAACACGTCAACACA 61.518 57.895 0.00 0.00 0.00 3.72
681 692 1.756375 CGATTGGACGTAGCAGCAGC 61.756 60.000 0.00 0.00 42.56 5.25
682 693 1.756375 GCGATTGGACGTAGCAGCAG 61.756 60.000 0.00 0.00 35.59 4.24
683 694 1.809619 GCGATTGGACGTAGCAGCA 60.810 57.895 0.00 0.00 35.59 4.41
686 697 4.178861 GTGCGATTGGACGTAGCA 57.821 55.556 0.00 0.00 35.59 3.49
748 761 2.970639 CACCGAGATGGACGTGGT 59.029 61.111 0.00 0.00 42.00 4.16
760 773 4.426112 CGCTCAGAGCTGCACCGA 62.426 66.667 20.39 0.00 39.60 4.69
772 788 2.741092 GTGGTCTTGTCCCGCTCA 59.259 61.111 0.00 0.00 0.00 4.26
778 794 0.325272 GGAGGAAGGTGGTCTTGTCC 59.675 60.000 0.00 0.00 35.50 4.02
785 801 2.208349 AGGCAGGAGGAAGGTGGT 59.792 61.111 0.00 0.00 0.00 4.16
877 893 3.328382 TTGGTGTTTATCCGACTCCAG 57.672 47.619 0.00 0.00 40.52 3.86
882 898 6.009115 AGTTTTGATTGGTGTTTATCCGAC 57.991 37.500 0.00 0.00 0.00 4.79
883 899 5.182380 GGAGTTTTGATTGGTGTTTATCCGA 59.818 40.000 0.00 0.00 0.00 4.55
884 900 5.399013 GGAGTTTTGATTGGTGTTTATCCG 58.601 41.667 0.00 0.00 0.00 4.18
885 901 5.399013 CGGAGTTTTGATTGGTGTTTATCC 58.601 41.667 0.00 0.00 0.00 2.59
886 902 5.048294 ACCGGAGTTTTGATTGGTGTTTATC 60.048 40.000 9.46 0.00 0.00 1.75
887 903 4.830600 ACCGGAGTTTTGATTGGTGTTTAT 59.169 37.500 9.46 0.00 0.00 1.40
897 913 3.074412 CAAGTAGCACCGGAGTTTTGAT 58.926 45.455 9.46 0.00 0.00 2.57
898 914 2.489971 CAAGTAGCACCGGAGTTTTGA 58.510 47.619 9.46 0.00 0.00 2.69
899 915 1.069227 GCAAGTAGCACCGGAGTTTTG 60.069 52.381 9.46 1.69 44.79 2.44
900 916 1.235724 GCAAGTAGCACCGGAGTTTT 58.764 50.000 9.46 0.00 44.79 2.43
901 917 2.928416 GCAAGTAGCACCGGAGTTT 58.072 52.632 9.46 0.00 44.79 2.66
902 918 4.695560 GCAAGTAGCACCGGAGTT 57.304 55.556 9.46 0.00 44.79 3.01
911 927 0.523757 GTCGACGAGGAGCAAGTAGC 60.524 60.000 0.00 0.00 46.19 3.58
912 928 0.099082 GGTCGACGAGGAGCAAGTAG 59.901 60.000 9.92 0.00 34.64 2.57
913 929 0.607217 TGGTCGACGAGGAGCAAGTA 60.607 55.000 9.92 0.00 41.09 2.24
914 930 1.901948 TGGTCGACGAGGAGCAAGT 60.902 57.895 9.92 0.00 41.09 3.16
915 931 1.444553 GTGGTCGACGAGGAGCAAG 60.445 63.158 9.92 0.00 45.03 4.01
916 932 1.740332 TTGTGGTCGACGAGGAGCAA 61.740 55.000 9.92 3.39 45.03 3.91
917 933 2.142357 CTTGTGGTCGACGAGGAGCA 62.142 60.000 9.92 7.96 41.72 4.26
922 938 0.446616 TCGATCTTGTGGTCGACGAG 59.553 55.000 9.92 5.10 41.44 4.18
942 959 3.369892 GCTAGCAAATCTTGGTCTGGAGA 60.370 47.826 10.63 0.00 42.20 3.71
943 960 2.941720 GCTAGCAAATCTTGGTCTGGAG 59.058 50.000 10.63 0.00 42.20 3.86
949 966 2.185004 ACGTGCTAGCAAATCTTGGT 57.815 45.000 21.29 6.11 44.64 3.67
970 987 2.135933 GACTCTGGTGTGTTGTGCTAC 58.864 52.381 0.00 0.00 0.00 3.58
971 988 1.070134 GGACTCTGGTGTGTTGTGCTA 59.930 52.381 0.00 0.00 0.00 3.49
972 989 0.179045 GGACTCTGGTGTGTTGTGCT 60.179 55.000 0.00 0.00 0.00 4.40
973 990 1.498865 CGGACTCTGGTGTGTTGTGC 61.499 60.000 0.00 0.00 0.00 4.57
975 992 1.445942 CCGGACTCTGGTGTGTTGT 59.554 57.895 0.00 0.00 0.00 3.32
978 995 0.252103 ATACCCGGACTCTGGTGTGT 60.252 55.000 0.73 0.00 36.04 3.72
986 1009 1.713297 ACCCATGTATACCCGGACTC 58.287 55.000 0.73 0.00 0.00 3.36
993 1016 5.608449 GAGACCAAGTTACCCATGTATACC 58.392 45.833 0.00 0.00 0.00 2.73
1107 1134 1.728778 CTCGATCATCAGCTCCGCG 60.729 63.158 0.00 0.00 0.00 6.46
1110 1137 1.372748 CGCCTCGATCATCAGCTCC 60.373 63.158 0.00 0.00 0.00 4.70
1308 1335 4.619320 CCCTTGCCCTTGCCACCA 62.619 66.667 0.00 0.00 36.33 4.17
1379 1406 4.398358 CACATTCAGCAGACTCATTTCCAT 59.602 41.667 0.00 0.00 0.00 3.41
1386 1413 1.293963 GCGCACATTCAGCAGACTCA 61.294 55.000 0.30 0.00 0.00 3.41
1446 1473 0.108615 AAGCCTCGAAGATGGTGTCG 60.109 55.000 0.00 0.00 32.35 4.35
1485 1519 6.267928 TCAGATTTCCTATTCTACCCTACAGC 59.732 42.308 0.00 0.00 0.00 4.40
1539 1573 8.158169 TGAAAAAGAAGGATGATCCATATTCG 57.842 34.615 14.90 0.00 39.61 3.34
1546 1580 5.649782 TGCTTGAAAAAGAAGGATGATCC 57.350 39.130 2.46 2.46 36.58 3.36
1600 1635 9.516314 AAAATAAGTTGAAGCTTTACAAGACAC 57.484 29.630 0.00 0.00 0.00 3.67
1631 1666 8.787852 ACTATTTCTAGCTCTGAAAACCTTTTG 58.212 33.333 15.64 6.02 37.05 2.44
1676 1714 3.681594 GCATCATGAAACGGAGGGAGTAA 60.682 47.826 0.00 0.00 0.00 2.24
1725 1763 9.480538 CAAACTTGATCAAAATTTGTGAAGTTG 57.519 29.630 24.13 11.66 36.05 3.16
1769 1807 9.480053 GATGCATATATGTTTGGCATTTTAGTT 57.520 29.630 14.14 0.00 44.52 2.24
1770 1808 8.640651 TGATGCATATATGTTTGGCATTTTAGT 58.359 29.630 14.14 0.00 44.52 2.24
1771 1809 9.647797 ATGATGCATATATGTTTGGCATTTTAG 57.352 29.630 14.14 0.00 44.52 1.85
1773 1811 9.999660 TTATGATGCATATATGTTTGGCATTTT 57.000 25.926 14.14 5.56 44.52 1.82
1774 1812 9.647797 CTTATGATGCATATATGTTTGGCATTT 57.352 29.630 14.14 5.84 44.52 2.32
1775 1813 9.027202 TCTTATGATGCATATATGTTTGGCATT 57.973 29.630 14.14 0.66 44.52 3.56
1776 1814 8.584063 TCTTATGATGCATATATGTTTGGCAT 57.416 30.769 14.14 10.37 46.91 4.40
1777 1815 7.999450 TCTTATGATGCATATATGTTTGGCA 57.001 32.000 14.14 5.91 39.03 4.92
1778 1816 8.851960 CATCTTATGATGCATATATGTTTGGC 57.148 34.615 14.14 0.00 42.83 4.52
1839 1877 9.675464 TTACTCGTGGATTAGATTGGTAAAAAT 57.325 29.630 0.00 0.00 0.00 1.82
1844 1883 8.014070 TCATTTACTCGTGGATTAGATTGGTA 57.986 34.615 0.00 0.00 0.00 3.25
1939 1981 7.537649 GTCGTATGCTATTCATAGATGTTTCGA 59.462 37.037 0.00 0.00 38.27 3.71
1964 2010 2.455674 TTTCTCGTGCATGTGCTAGT 57.544 45.000 5.68 0.00 42.66 2.57
1975 2021 5.353938 TCGTTTATCCCCTATTTTCTCGTG 58.646 41.667 0.00 0.00 0.00 4.35
1981 2027 7.222161 GGTATGACTCGTTTATCCCCTATTTT 58.778 38.462 0.00 0.00 0.00 1.82
2120 2166 2.202797 CATCTCCGTCCGCCACTG 60.203 66.667 0.00 0.00 0.00 3.66
2184 2246 1.513158 CTGCCCGAGAGAACGACAT 59.487 57.895 0.00 0.00 35.09 3.06
2213 2275 0.182775 GGTGCCACCGGAATCCTATT 59.817 55.000 9.46 0.00 0.00 1.73
2219 2281 3.628646 GAGCAGGTGCCACCGGAAT 62.629 63.158 18.67 5.01 44.90 3.01
2273 2335 2.094757 TTTCTCTGTGCTTCCGGCGA 62.095 55.000 9.30 0.00 45.43 5.54
2274 2336 1.227999 TTTTCTCTGTGCTTCCGGCG 61.228 55.000 0.00 0.00 45.43 6.46
2275 2337 0.519077 CTTTTCTCTGTGCTTCCGGC 59.481 55.000 0.00 0.00 42.22 6.13
2276 2338 2.169832 TCTTTTCTCTGTGCTTCCGG 57.830 50.000 0.00 0.00 0.00 5.14
2280 2346 5.918608 TCTACTGTTCTTTTCTCTGTGCTT 58.081 37.500 0.00 0.00 0.00 3.91
2291 2357 5.655532 TCCTAGCCGTTATCTACTGTTCTTT 59.344 40.000 0.00 0.00 0.00 2.52
2293 2359 4.789807 TCCTAGCCGTTATCTACTGTTCT 58.210 43.478 0.00 0.00 0.00 3.01
2305 2371 1.003118 TCTTGCACAATCCTAGCCGTT 59.997 47.619 0.00 0.00 0.00 4.44
2315 2381 1.701847 ACTCACTCCCTCTTGCACAAT 59.298 47.619 0.00 0.00 0.00 2.71
2368 2434 5.657302 CCATCTACCCGCTATATAAGAAGGT 59.343 44.000 0.00 0.00 36.44 3.50
2404 2475 1.066422 GCGGACTCGATCATGAGCA 59.934 57.895 12.15 0.00 39.68 4.26
2407 2478 0.248498 GTTCGCGGACTCGATCATGA 60.248 55.000 11.18 0.00 38.37 3.07
2430 2501 2.640989 CGAGACGTTGGACCGTGA 59.359 61.111 0.00 0.00 41.98 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.