Multiple sequence alignment - TraesCS5B01G205700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G205700 chr5B 100.000 9779 0 0 1 9779 374453353 374443575 0.000000e+00 18059.0
1 TraesCS5B01G205700 chr5B 96.525 1669 49 2 5266 6925 15326417 15328085 0.000000e+00 2752.0
2 TraesCS5B01G205700 chr5B 95.618 1666 64 3 5266 6927 655480599 655482259 0.000000e+00 2663.0
3 TraesCS5B01G205700 chr5B 95.402 87 4 0 3899 3985 374449369 374449283 1.320000e-28 139.0
4 TraesCS5B01G205700 chr5B 95.402 87 4 0 3985 4071 374449455 374449369 1.320000e-28 139.0
5 TraesCS5B01G205700 chr5B 100.000 38 0 0 1955 1992 374451360 374451323 4.900000e-08 71.3
6 TraesCS5B01G205700 chr5B 100.000 38 0 0 1994 2031 374451399 374451362 4.900000e-08 71.3
7 TraesCS5B01G205700 chr4B 97.108 1660 42 3 5271 6926 89332149 89330492 0.000000e+00 2795.0
8 TraesCS5B01G205700 chr4B 94.089 1235 69 4 5701 6933 531098378 531097146 0.000000e+00 1873.0
9 TraesCS5B01G205700 chr5A 92.104 2001 83 30 6925 8886 419365202 419363238 0.000000e+00 2750.0
10 TraesCS5B01G205700 chr5A 96.154 1586 41 7 3652 5237 419366753 419365188 0.000000e+00 2573.0
11 TraesCS5B01G205700 chr5A 90.996 1877 62 33 165 1997 419369778 419367965 0.000000e+00 2431.0
12 TraesCS5B01G205700 chr5A 91.986 861 47 14 2028 2871 419367607 419366752 0.000000e+00 1188.0
13 TraesCS5B01G205700 chr5A 88.525 732 72 9 2926 3649 602793253 602792526 0.000000e+00 876.0
14 TraesCS5B01G205700 chr5A 91.808 354 27 2 8895 9248 419360229 419359878 8.820000e-135 492.0
15 TraesCS5B01G205700 chr5A 96.552 87 3 0 3899 3985 419366423 419366337 2.850000e-30 145.0
16 TraesCS5B01G205700 chr5A 96.552 87 3 0 3985 4071 419366509 419366423 2.850000e-30 145.0
17 TraesCS5B01G205700 chr5A 97.368 38 1 0 1994 2031 419368007 419367970 2.280000e-06 65.8
18 TraesCS5B01G205700 chr2B 96.401 1667 54 3 5262 6923 401154935 401153270 0.000000e+00 2741.0
19 TraesCS5B01G205700 chr2B 91.731 1173 86 8 5761 6924 52675991 52677161 0.000000e+00 1618.0
20 TraesCS5B01G205700 chr2B 81.111 450 51 14 2851 3272 278801028 278801471 7.320000e-86 329.0
21 TraesCS5B01G205700 chr2B 95.597 159 6 1 9253 9410 477004812 477004654 4.530000e-63 254.0
22 TraesCS5B01G205700 chr2B 93.750 160 9 1 9252 9410 477003973 477003814 1.270000e-58 239.0
23 TraesCS5B01G205700 chr7B 96.498 1599 52 1 5330 6924 512756459 512754861 0.000000e+00 2639.0
24 TraesCS5B01G205700 chr7B 96.732 1224 38 2 5701 6924 513659957 513661178 0.000000e+00 2037.0
25 TraesCS5B01G205700 chr7B 90.027 732 62 7 2924 3650 432494942 432494217 0.000000e+00 937.0
26 TraesCS5B01G205700 chr7B 86.009 436 31 15 5267 5701 513659494 513659900 3.240000e-119 440.0
27 TraesCS5B01G205700 chr5D 92.505 1868 64 26 165 1994 322791915 322790086 0.000000e+00 2604.0
28 TraesCS5B01G205700 chr5D 91.914 1818 91 21 7035 8814 322787282 322785483 0.000000e+00 2492.0
29 TraesCS5B01G205700 chr5D 94.766 1261 48 9 3985 5237 322788659 322787409 0.000000e+00 1947.0
30 TraesCS5B01G205700 chr5D 93.091 854 22 14 2028 2871 322789729 322788903 0.000000e+00 1216.0
31 TraesCS5B01G205700 chr5D 88.664 741 64 11 2926 3660 19508663 19507937 0.000000e+00 885.0
32 TraesCS5B01G205700 chr5D 94.030 335 16 2 3652 3985 322788904 322788573 1.130000e-138 505.0
33 TraesCS5B01G205700 chr5D 91.440 257 22 0 8896 9152 322783940 322783684 4.340000e-93 353.0
34 TraesCS5B01G205700 chr5D 81.818 198 28 7 5273 5465 272363120 272362926 1.020000e-34 159.0
35 TraesCS5B01G205700 chr5D 82.653 196 13 2 2859 3034 9063305 9063499 4.730000e-33 154.0
36 TraesCS5B01G205700 chr5D 90.909 99 9 0 9150 9248 322783421 322783323 6.160000e-27 134.0
37 TraesCS5B01G205700 chr5D 88.991 109 10 1 6925 7033 322787423 322787317 6.160000e-27 134.0
38 TraesCS5B01G205700 chr2D 94.156 1232 64 7 5701 6928 536175686 536174459 0.000000e+00 1869.0
39 TraesCS5B01G205700 chr2D 88.981 726 65 12 2933 3649 300921107 300921826 0.000000e+00 883.0
40 TraesCS5B01G205700 chr2D 90.123 405 24 2 5301 5701 536176135 536175743 6.770000e-141 512.0
41 TraesCS5B01G205700 chr2A 87.469 814 66 9 2865 3650 452785928 452786733 0.000000e+00 905.0
42 TraesCS5B01G205700 chr6A 89.041 730 68 9 2924 3647 347599256 347598533 0.000000e+00 894.0
43 TraesCS5B01G205700 chr6A 100.000 28 0 0 608 635 456756783 456756756 1.800000e-02 52.8
44 TraesCS5B01G205700 chr1A 88.874 737 69 10 2924 3653 135818212 135817482 0.000000e+00 894.0
45 TraesCS5B01G205700 chr1A 88.467 737 71 7 2925 3655 219298067 219298795 0.000000e+00 878.0
46 TraesCS5B01G205700 chr1A 94.615 130 7 0 22 151 136795662 136795791 1.670000e-47 202.0
47 TraesCS5B01G205700 chr3A 88.571 735 71 7 2925 3653 164400963 164401690 0.000000e+00 880.0
48 TraesCS5B01G205700 chr3A 95.044 343 11 3 9379 9718 703746105 703745766 1.450000e-147 534.0
49 TraesCS5B01G205700 chr3A 95.044 343 11 3 9379 9718 703752445 703752106 1.450000e-147 534.0
50 TraesCS5B01G205700 chr3A 95.044 343 11 3 9379 9718 703755614 703755275 1.450000e-147 534.0
51 TraesCS5B01G205700 chr3A 95.044 343 11 3 9379 9718 703758783 703758444 1.450000e-147 534.0
52 TraesCS5B01G205700 chr3A 95.044 343 11 3 9379 9718 703761954 703761615 1.450000e-147 534.0
53 TraesCS5B01G205700 chr3A 94.752 343 12 3 9379 9718 703749276 703748937 6.730000e-146 529.0
54 TraesCS5B01G205700 chr3A 93.836 146 6 2 9379 9521 703742936 703742791 5.950000e-52 217.0
55 TraesCS5B01G205700 chr3A 94.697 132 7 0 20 151 334565537 334565668 1.290000e-48 206.0
56 TraesCS5B01G205700 chr7A 96.296 324 9 1 9395 9718 205107557 205107877 6.730000e-146 529.0
57 TraesCS5B01G205700 chr7A 82.759 319 29 8 2854 3148 323246366 323246682 2.710000e-65 261.0
58 TraesCS5B01G205700 chr7A 94.521 146 5 2 9379 9521 205110694 205110839 1.280000e-53 222.0
59 TraesCS5B01G205700 chr7A 80.976 205 18 9 2850 3034 600811802 600812005 1.020000e-29 143.0
60 TraesCS5B01G205700 chr7A 85.484 124 15 2 2862 2982 713852595 713852718 1.030000e-24 126.0
61 TraesCS5B01G205700 chr7A 84.677 124 16 2 2862 2982 713868982 713869105 4.800000e-23 121.0
62 TraesCS5B01G205700 chr7D 78.281 442 44 24 2865 3257 315034490 315034052 4.570000e-58 237.0
63 TraesCS5B01G205700 chr7D 92.174 115 6 3 2857 2970 608761251 608761139 1.020000e-34 159.0
64 TraesCS5B01G205700 chrUn 93.939 132 8 0 20 151 73531595 73531464 5.990000e-47 200.0
65 TraesCS5B01G205700 chr6D 93.939 132 8 0 20 151 82771954 82771823 5.990000e-47 200.0
66 TraesCS5B01G205700 chr6D 93.939 132 8 0 20 151 82772374 82772243 5.990000e-47 200.0
67 TraesCS5B01G205700 chr6D 93.939 132 8 0 20 151 108344482 108344613 5.990000e-47 200.0
68 TraesCS5B01G205700 chr6D 93.939 132 8 0 20 151 166244347 166244478 5.990000e-47 200.0
69 TraesCS5B01G205700 chr6D 93.939 132 8 0 20 151 218744214 218744083 5.990000e-47 200.0
70 TraesCS5B01G205700 chr6D 95.000 40 2 0 9505 9544 63929174 63929213 8.200000e-06 63.9
71 TraesCS5B01G205700 chr4D 93.939 132 8 0 20 151 113494163 113494294 5.990000e-47 200.0
72 TraesCS5B01G205700 chr6B 83.333 198 25 7 5273 5465 669337791 669337597 1.010000e-39 176.0
73 TraesCS5B01G205700 chr6B 92.553 94 6 1 2875 2967 373962303 373962396 6.160000e-27 134.0
74 TraesCS5B01G205700 chr3B 96.875 32 0 1 605 635 402450505 402450536 1.800000e-02 52.8
75 TraesCS5B01G205700 chr3B 100.000 28 0 0 608 635 402450515 402450542 1.800000e-02 52.8
76 TraesCS5B01G205700 chr3B 100.000 28 0 0 608 635 669429625 669429598 1.800000e-02 52.8
77 TraesCS5B01G205700 chr3B 96.875 32 0 1 605 635 669429635 669429604 1.800000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G205700 chr5B 374443575 374453353 9778 True 18059.000 18059 100.000000 1 9779 1 chr5B.!!$R1 9778
1 TraesCS5B01G205700 chr5B 15326417 15328085 1668 False 2752.000 2752 96.525000 5266 6925 1 chr5B.!!$F1 1659
2 TraesCS5B01G205700 chr5B 655480599 655482259 1660 False 2663.000 2663 95.618000 5266 6927 1 chr5B.!!$F2 1661
3 TraesCS5B01G205700 chr4B 89330492 89332149 1657 True 2795.000 2795 97.108000 5271 6926 1 chr4B.!!$R1 1655
4 TraesCS5B01G205700 chr4B 531097146 531098378 1232 True 1873.000 1873 94.089000 5701 6933 1 chr4B.!!$R2 1232
5 TraesCS5B01G205700 chr5A 419359878 419369778 9900 True 1223.725 2750 94.190000 165 9248 8 chr5A.!!$R2 9083
6 TraesCS5B01G205700 chr5A 602792526 602793253 727 True 876.000 876 88.525000 2926 3649 1 chr5A.!!$R1 723
7 TraesCS5B01G205700 chr2B 401153270 401154935 1665 True 2741.000 2741 96.401000 5262 6923 1 chr2B.!!$R1 1661
8 TraesCS5B01G205700 chr2B 52675991 52677161 1170 False 1618.000 1618 91.731000 5761 6924 1 chr2B.!!$F1 1163
9 TraesCS5B01G205700 chr2B 477003814 477004812 998 True 246.500 254 94.673500 9252 9410 2 chr2B.!!$R2 158
10 TraesCS5B01G205700 chr7B 512754861 512756459 1598 True 2639.000 2639 96.498000 5330 6924 1 chr7B.!!$R2 1594
11 TraesCS5B01G205700 chr7B 513659494 513661178 1684 False 1238.500 2037 91.370500 5267 6924 2 chr7B.!!$F1 1657
12 TraesCS5B01G205700 chr7B 432494217 432494942 725 True 937.000 937 90.027000 2924 3650 1 chr7B.!!$R1 726
13 TraesCS5B01G205700 chr5D 322783323 322791915 8592 True 1173.125 2604 92.205750 165 9248 8 chr5D.!!$R3 9083
14 TraesCS5B01G205700 chr5D 19507937 19508663 726 True 885.000 885 88.664000 2926 3660 1 chr5D.!!$R1 734
15 TraesCS5B01G205700 chr2D 536174459 536176135 1676 True 1190.500 1869 92.139500 5301 6928 2 chr2D.!!$R1 1627
16 TraesCS5B01G205700 chr2D 300921107 300921826 719 False 883.000 883 88.981000 2933 3649 1 chr2D.!!$F1 716
17 TraesCS5B01G205700 chr2A 452785928 452786733 805 False 905.000 905 87.469000 2865 3650 1 chr2A.!!$F1 785
18 TraesCS5B01G205700 chr6A 347598533 347599256 723 True 894.000 894 89.041000 2924 3647 1 chr6A.!!$R1 723
19 TraesCS5B01G205700 chr1A 135817482 135818212 730 True 894.000 894 88.874000 2924 3653 1 chr1A.!!$R1 729
20 TraesCS5B01G205700 chr1A 219298067 219298795 728 False 878.000 878 88.467000 2925 3655 1 chr1A.!!$F2 730
21 TraesCS5B01G205700 chr3A 164400963 164401690 727 False 880.000 880 88.571000 2925 3653 1 chr3A.!!$F1 728
22 TraesCS5B01G205700 chr3A 703742791 703761954 19163 True 488.000 534 94.829714 9379 9718 7 chr3A.!!$R1 339
23 TraesCS5B01G205700 chr7A 205107557 205110839 3282 False 375.500 529 95.408500 9379 9718 2 chr7A.!!$F5 339

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.033796 ATTCGTGGACGGAGGGAGTA 60.034 55.000 0.00 0.00 40.29 2.59 F
24 25 0.034283 GTGGACGGAGGGAGTAGACT 60.034 60.000 0.00 0.00 0.00 3.24 F
611 640 0.039472 ACTCTCTCTCTCTGCTGGCA 59.961 55.000 0.00 0.00 0.00 4.92 F
615 644 0.540454 TCTCTCTCTGCTGGCAATGG 59.460 55.000 0.00 0.00 0.00 3.16 F
2191 2593 0.890542 GCATGTTGTGTGAGGAGCCA 60.891 55.000 0.00 0.00 0.00 4.75 F
3564 4020 1.044725 GCGTTGCAACATGTTCTTCG 58.955 50.000 28.01 12.57 0.00 3.79 F
4730 5197 1.422161 ATAGCAGTGGGCCATCTCCC 61.422 60.000 10.70 0.00 46.50 4.30 F
5776 6370 3.083997 GAGGTGGAGCCGGTGGAT 61.084 66.667 1.90 0.00 43.70 3.41 F
6506 7114 0.249911 GTGGCGACCAGACTCTTGTT 60.250 55.000 0.00 0.00 32.34 2.83 F
8089 8749 1.067846 CCGTGTTCGATTCAGGTCTGA 60.068 52.381 0.00 0.00 39.71 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1710 1769 1.758906 CCCGTCCTCCTCCTCTTCC 60.759 68.421 0.00 0.00 0.00 3.46 R
2006 2079 4.038522 GGAGGATCTCAAATCTCGATCACA 59.961 45.833 0.00 0.00 36.22 3.58 R
2083 2484 2.030457 GTCAATACGCCAGATTGTTCCG 59.970 50.000 0.00 0.00 36.02 4.30 R
2575 2989 2.094675 ACAAAAGTGCTGCAGTCAAGT 58.905 42.857 16.64 6.63 0.00 3.16 R
4082 4547 0.321122 CAGTGCAGAGAGACCCAACC 60.321 60.000 0.00 0.00 0.00 3.77 R
5401 5877 0.545548 AGAAGGAAAGAGACCCCGCT 60.546 55.000 0.00 0.00 0.00 5.52 R
6506 7114 0.392863 CTCCCATCACCATCGTTGCA 60.393 55.000 0.00 0.00 0.00 4.08 R
7056 7700 0.679002 CAGCACATGGGCAGCTAAGT 60.679 55.000 24.51 0.00 36.73 2.24 R
8136 8797 0.248012 TACGCCTCGAAAATGGCTCA 59.752 50.000 11.21 0.00 46.42 4.26 R
9360 14757 0.394488 GCAAGAACCCTAGCTTCCCC 60.394 60.000 0.00 0.00 0.00 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.294750 CATTCGTGGACGGAGGGA 58.705 61.111 0.00 0.00 40.29 4.20
18 19 1.141881 CATTCGTGGACGGAGGGAG 59.858 63.158 0.00 0.00 40.29 4.30
19 20 1.305046 ATTCGTGGACGGAGGGAGT 60.305 57.895 0.00 0.00 40.29 3.85
20 21 0.033796 ATTCGTGGACGGAGGGAGTA 60.034 55.000 0.00 0.00 40.29 2.59
21 22 0.679002 TTCGTGGACGGAGGGAGTAG 60.679 60.000 0.00 0.00 40.29 2.57
22 23 1.077930 CGTGGACGGAGGGAGTAGA 60.078 63.158 0.00 0.00 35.37 2.59
23 24 1.375098 CGTGGACGGAGGGAGTAGAC 61.375 65.000 0.00 0.00 35.37 2.59
24 25 0.034283 GTGGACGGAGGGAGTAGACT 60.034 60.000 0.00 0.00 0.00 3.24
25 26 0.255318 TGGACGGAGGGAGTAGACTC 59.745 60.000 0.75 0.75 42.14 3.36
26 27 0.255318 GGACGGAGGGAGTAGACTCA 59.745 60.000 11.64 0.00 44.60 3.41
27 28 1.133730 GGACGGAGGGAGTAGACTCAT 60.134 57.143 11.64 0.00 44.60 2.90
28 29 2.106166 GGACGGAGGGAGTAGACTCATA 59.894 54.545 11.64 0.00 44.60 2.15
29 30 3.244981 GGACGGAGGGAGTAGACTCATAT 60.245 52.174 11.64 0.00 44.60 1.78
30 31 4.400120 GACGGAGGGAGTAGACTCATATT 58.600 47.826 11.64 0.00 44.60 1.28
31 32 4.145807 ACGGAGGGAGTAGACTCATATTG 58.854 47.826 11.64 1.40 44.60 1.90
32 33 4.145807 CGGAGGGAGTAGACTCATATTGT 58.854 47.826 11.64 0.00 44.60 2.71
33 34 5.163120 ACGGAGGGAGTAGACTCATATTGTA 60.163 44.000 11.64 0.00 44.60 2.41
34 35 5.946972 CGGAGGGAGTAGACTCATATTGTAT 59.053 44.000 11.64 0.00 44.60 2.29
35 36 6.434652 CGGAGGGAGTAGACTCATATTGTATT 59.565 42.308 11.64 0.00 44.60 1.89
36 37 7.575909 CGGAGGGAGTAGACTCATATTGTATTG 60.576 44.444 11.64 0.00 44.60 1.90
37 38 7.451877 GGAGGGAGTAGACTCATATTGTATTGA 59.548 40.741 11.64 0.00 44.60 2.57
38 39 8.415950 AGGGAGTAGACTCATATTGTATTGAG 57.584 38.462 11.64 0.00 44.60 3.02
39 40 8.228206 AGGGAGTAGACTCATATTGTATTGAGA 58.772 37.037 11.64 0.00 44.60 3.27
40 41 8.301002 GGGAGTAGACTCATATTGTATTGAGAC 58.699 40.741 11.64 1.18 44.60 3.36
41 42 8.851145 GGAGTAGACTCATATTGTATTGAGACA 58.149 37.037 11.64 0.00 44.60 3.41
44 45 9.973450 GTAGACTCATATTGTATTGAGACATGT 57.027 33.333 0.00 0.00 41.53 3.21
45 46 8.883954 AGACTCATATTGTATTGAGACATGTG 57.116 34.615 1.15 0.00 41.53 3.21
46 47 8.699130 AGACTCATATTGTATTGAGACATGTGA 58.301 33.333 1.15 0.00 41.53 3.58
47 48 9.486497 GACTCATATTGTATTGAGACATGTGAT 57.514 33.333 1.15 0.00 41.53 3.06
48 49 9.269453 ACTCATATTGTATTGAGACATGTGATG 57.731 33.333 1.15 0.00 41.53 3.07
50 51 9.617523 TCATATTGTATTGAGACATGTGATGTT 57.382 29.630 1.15 0.00 45.03 2.71
53 54 8.791327 ATTGTATTGAGACATGTGATGTTACA 57.209 30.769 1.15 3.33 45.03 2.41
54 55 7.832503 TGTATTGAGACATGTGATGTTACAG 57.167 36.000 1.15 0.00 45.03 2.74
55 56 7.386059 TGTATTGAGACATGTGATGTTACAGT 58.614 34.615 1.15 0.00 45.03 3.55
56 57 8.527810 TGTATTGAGACATGTGATGTTACAGTA 58.472 33.333 1.15 0.00 45.03 2.74
57 58 9.366216 GTATTGAGACATGTGATGTTACAGTAA 57.634 33.333 1.15 0.00 45.03 2.24
58 59 7.652300 TTGAGACATGTGATGTTACAGTAAC 57.348 36.000 15.58 15.58 45.03 2.50
59 60 6.993079 TGAGACATGTGATGTTACAGTAACT 58.007 36.000 21.56 9.41 45.03 2.24
60 61 8.117813 TGAGACATGTGATGTTACAGTAACTA 57.882 34.615 21.56 10.50 45.03 2.24
61 62 8.581578 TGAGACATGTGATGTTACAGTAACTAA 58.418 33.333 21.56 5.60 45.03 2.24
62 63 8.758633 AGACATGTGATGTTACAGTAACTAAC 57.241 34.615 21.56 16.66 45.03 2.34
63 64 8.585881 AGACATGTGATGTTACAGTAACTAACT 58.414 33.333 21.56 6.57 45.03 2.24
64 65 9.850628 GACATGTGATGTTACAGTAACTAACTA 57.149 33.333 21.56 4.25 45.03 2.24
88 89 5.844601 AGTTACTCAAACTATCCCTCTCCT 58.155 41.667 0.00 0.00 46.85 3.69
89 90 5.894964 AGTTACTCAAACTATCCCTCTCCTC 59.105 44.000 0.00 0.00 46.85 3.71
90 91 4.338795 ACTCAAACTATCCCTCTCCTCA 57.661 45.455 0.00 0.00 0.00 3.86
91 92 4.889780 ACTCAAACTATCCCTCTCCTCAT 58.110 43.478 0.00 0.00 0.00 2.90
92 93 5.284582 ACTCAAACTATCCCTCTCCTCATT 58.715 41.667 0.00 0.00 0.00 2.57
93 94 6.444704 ACTCAAACTATCCCTCTCCTCATTA 58.555 40.000 0.00 0.00 0.00 1.90
94 95 6.903534 ACTCAAACTATCCCTCTCCTCATTAA 59.096 38.462 0.00 0.00 0.00 1.40
95 96 7.125792 TCAAACTATCCCTCTCCTCATTAAC 57.874 40.000 0.00 0.00 0.00 2.01
96 97 6.903534 TCAAACTATCCCTCTCCTCATTAACT 59.096 38.462 0.00 0.00 0.00 2.24
97 98 6.987403 AACTATCCCTCTCCTCATTAACTC 57.013 41.667 0.00 0.00 0.00 3.01
98 99 6.031964 ACTATCCCTCTCCTCATTAACTCA 57.968 41.667 0.00 0.00 0.00 3.41
99 100 6.629156 ACTATCCCTCTCCTCATTAACTCAT 58.371 40.000 0.00 0.00 0.00 2.90
100 101 7.079048 ACTATCCCTCTCCTCATTAACTCATT 58.921 38.462 0.00 0.00 0.00 2.57
101 102 5.620738 TCCCTCTCCTCATTAACTCATTG 57.379 43.478 0.00 0.00 0.00 2.82
102 103 5.280499 TCCCTCTCCTCATTAACTCATTGA 58.720 41.667 0.00 0.00 0.00 2.57
103 104 5.907662 TCCCTCTCCTCATTAACTCATTGAT 59.092 40.000 0.00 0.00 0.00 2.57
104 105 7.075797 TCCCTCTCCTCATTAACTCATTGATA 58.924 38.462 0.00 0.00 0.00 2.15
105 106 7.015682 TCCCTCTCCTCATTAACTCATTGATAC 59.984 40.741 0.00 0.00 0.00 2.24
106 107 7.202038 CCCTCTCCTCATTAACTCATTGATACA 60.202 40.741 0.00 0.00 0.00 2.29
107 108 8.373981 CCTCTCCTCATTAACTCATTGATACAT 58.626 37.037 0.00 0.00 0.00 2.29
111 112 9.494271 TCCTCATTAACTCATTGATACATAAGC 57.506 33.333 0.00 0.00 0.00 3.09
112 113 9.276590 CCTCATTAACTCATTGATACATAAGCA 57.723 33.333 0.00 0.00 0.00 3.91
125 126 9.979578 TTGATACATAAGCAAATTTGTTGAGTT 57.020 25.926 19.03 8.15 0.00 3.01
126 127 9.409312 TGATACATAAGCAAATTTGTTGAGTTG 57.591 29.630 19.03 11.20 0.00 3.16
127 128 8.761575 ATACATAAGCAAATTTGTTGAGTTGG 57.238 30.769 19.03 5.18 0.00 3.77
128 129 6.815089 ACATAAGCAAATTTGTTGAGTTGGA 58.185 32.000 19.03 0.00 0.00 3.53
129 130 6.701400 ACATAAGCAAATTTGTTGAGTTGGAC 59.299 34.615 19.03 0.00 0.00 4.02
130 131 5.343307 AAGCAAATTTGTTGAGTTGGACT 57.657 34.783 19.03 1.40 0.00 3.85
131 132 4.936891 AGCAAATTTGTTGAGTTGGACTC 58.063 39.130 19.03 1.21 45.26 3.36
142 143 2.924290 GAGTTGGACTCGATGTTACTGC 59.076 50.000 0.00 0.00 35.28 4.40
143 144 2.563179 AGTTGGACTCGATGTTACTGCT 59.437 45.455 0.00 0.00 0.00 4.24
144 145 3.762288 AGTTGGACTCGATGTTACTGCTA 59.238 43.478 0.00 0.00 0.00 3.49
145 146 4.219944 AGTTGGACTCGATGTTACTGCTAA 59.780 41.667 0.00 0.00 0.00 3.09
146 147 4.794278 TGGACTCGATGTTACTGCTAAA 57.206 40.909 0.00 0.00 0.00 1.85
147 148 4.744570 TGGACTCGATGTTACTGCTAAAG 58.255 43.478 0.00 0.00 0.00 1.85
148 149 4.219944 TGGACTCGATGTTACTGCTAAAGT 59.780 41.667 0.00 0.00 43.40 2.66
149 150 5.169295 GGACTCGATGTTACTGCTAAAGTT 58.831 41.667 0.00 0.00 40.56 2.66
150 151 6.071784 TGGACTCGATGTTACTGCTAAAGTTA 60.072 38.462 0.00 0.00 40.56 2.24
151 152 6.810182 GGACTCGATGTTACTGCTAAAGTTAA 59.190 38.462 0.00 0.00 40.56 2.01
152 153 7.009357 GGACTCGATGTTACTGCTAAAGTTAAG 59.991 40.741 0.00 0.00 40.56 1.85
153 154 7.376615 ACTCGATGTTACTGCTAAAGTTAAGT 58.623 34.615 0.00 0.00 40.56 2.24
154 155 7.871463 ACTCGATGTTACTGCTAAAGTTAAGTT 59.129 33.333 0.00 0.00 40.56 2.66
155 156 9.350357 CTCGATGTTACTGCTAAAGTTAAGTTA 57.650 33.333 0.00 0.00 40.56 2.24
156 157 9.865321 TCGATGTTACTGCTAAAGTTAAGTTAT 57.135 29.630 0.00 0.00 40.56 1.89
162 163 7.390918 ACTGCTAAAGTTAAGTTATATCGCG 57.609 36.000 0.00 0.00 34.57 5.87
163 164 6.420008 ACTGCTAAAGTTAAGTTATATCGCGG 59.580 38.462 6.13 3.36 34.57 6.46
171 172 6.257193 AGTTAAGTTATATCGCGGGTCTTTTG 59.743 38.462 6.13 0.00 0.00 2.44
199 200 3.300009 GTCGATTCTTGTGGTTTGCTTG 58.700 45.455 0.00 0.00 0.00 4.01
200 201 2.053627 CGATTCTTGTGGTTTGCTTGC 58.946 47.619 0.00 0.00 0.00 4.01
203 206 0.685785 TCTTGTGGTTTGCTTGCCCA 60.686 50.000 0.00 0.00 0.00 5.36
210 213 2.496871 TGGTTTGCTTGCCCATAGAATG 59.503 45.455 0.00 0.00 0.00 2.67
254 257 0.690762 AGTACCCAAAGCATCGTGGT 59.309 50.000 0.00 0.00 32.60 4.16
277 280 3.332034 ACGGTGGCAATCAAACTAGTAC 58.668 45.455 0.00 0.00 0.00 2.73
278 281 3.007614 ACGGTGGCAATCAAACTAGTACT 59.992 43.478 0.00 0.00 0.00 2.73
395 398 1.066908 GAGGCGAATCTGAGAGTCAGG 59.933 57.143 10.70 0.00 44.39 3.86
416 419 9.903682 GTCAGGAACTTAAGTTAAAATTAACCC 57.096 33.333 20.58 13.54 39.74 4.11
447 450 5.008019 GTCCATATGAAACCACTGCACATAG 59.992 44.000 3.65 0.00 0.00 2.23
448 451 4.883585 CCATATGAAACCACTGCACATAGT 59.116 41.667 3.65 0.00 0.00 2.12
463 469 8.246180 ACTGCACATAGTATGAAGGAAAAATTG 58.754 33.333 17.13 1.90 0.00 2.32
482 488 1.409064 TGCACTCCTCACGACATATCC 59.591 52.381 0.00 0.00 0.00 2.59
487 493 1.679680 TCCTCACGACATATCCGAACC 59.320 52.381 0.00 0.00 0.00 3.62
518 524 1.490574 CCTTTTCACCCACCACCAAA 58.509 50.000 0.00 0.00 0.00 3.28
519 525 1.834263 CCTTTTCACCCACCACCAAAA 59.166 47.619 0.00 0.00 0.00 2.44
520 526 2.237392 CCTTTTCACCCACCACCAAAAA 59.763 45.455 0.00 0.00 0.00 1.94
557 582 5.489011 CGAAACACGAACAAACAAAAAGT 57.511 34.783 0.00 0.00 45.77 2.66
559 584 5.998772 CGAAACACGAACAAACAAAAAGTTC 59.001 36.000 0.00 0.00 45.77 3.01
560 585 6.129300 CGAAACACGAACAAACAAAAAGTTCT 60.129 34.615 0.00 0.00 45.77 3.01
561 586 6.446659 AACACGAACAAACAAAAAGTTCTG 57.553 33.333 0.00 0.00 40.26 3.02
605 634 4.186926 CTCACTCTCACTCTCTCTCTCTG 58.813 52.174 0.00 0.00 0.00 3.35
606 635 2.679837 CACTCTCACTCTCTCTCTCTGC 59.320 54.545 0.00 0.00 0.00 4.26
607 636 2.573462 ACTCTCACTCTCTCTCTCTGCT 59.427 50.000 0.00 0.00 0.00 4.24
608 637 2.941064 CTCTCACTCTCTCTCTCTGCTG 59.059 54.545 0.00 0.00 0.00 4.41
611 640 0.039472 ACTCTCTCTCTCTGCTGGCA 59.961 55.000 0.00 0.00 0.00 4.92
612 641 1.184431 CTCTCTCTCTCTGCTGGCAA 58.816 55.000 0.00 0.00 0.00 4.52
613 642 1.758280 CTCTCTCTCTCTGCTGGCAAT 59.242 52.381 0.00 0.00 0.00 3.56
614 643 1.481363 TCTCTCTCTCTGCTGGCAATG 59.519 52.381 0.00 0.00 0.00 2.82
615 644 0.540454 TCTCTCTCTGCTGGCAATGG 59.460 55.000 0.00 0.00 0.00 3.16
616 645 1.077930 TCTCTCTGCTGGCAATGGC 60.078 57.895 0.00 0.00 40.13 4.40
617 646 1.378119 CTCTCTGCTGGCAATGGCA 60.378 57.895 9.67 9.67 43.71 4.92
618 647 0.963856 CTCTCTGCTGGCAATGGCAA 60.964 55.000 11.45 0.00 43.71 4.52
645 674 3.476740 GCAATGGCCAGTACTGCTA 57.523 52.632 17.86 11.10 0.00 3.49
759 793 2.262915 GTCGAGCCACAGTGGAGG 59.737 66.667 24.96 10.96 40.96 4.30
1267 1325 2.082231 CATCTCTTGCCACTGGAGTTG 58.918 52.381 0.00 0.00 0.00 3.16
1922 1993 3.273434 TCCAGTGCATTACTCTGATTGC 58.727 45.455 2.98 0.00 41.48 3.56
1936 2007 4.539726 TCTGATTGCTGGCTGGAAAATAT 58.460 39.130 1.97 0.00 0.00 1.28
1998 2071 5.516984 AGATTTGAGATCCTCCTGCATTTT 58.483 37.500 0.00 0.00 0.00 1.82
1999 2072 5.593502 AGATTTGAGATCCTCCTGCATTTTC 59.406 40.000 0.00 0.00 0.00 2.29
2002 2075 3.520721 TGAGATCCTCCTGCATTTTCAGA 59.479 43.478 0.00 0.00 36.19 3.27
2004 2077 4.927049 AGATCCTCCTGCATTTTCAGAAA 58.073 39.130 0.00 0.00 36.19 2.52
2006 2079 5.956563 AGATCCTCCTGCATTTTCAGAAAAT 59.043 36.000 14.43 14.43 41.57 1.82
2020 2093 8.732413 TTTTCAGAAAATGTGATCGAGATTTG 57.268 30.769 4.06 0.00 0.00 2.32
2022 2095 7.299787 TCAGAAAATGTGATCGAGATTTGAG 57.700 36.000 0.00 0.00 0.00 3.02
2023 2096 7.099120 TCAGAAAATGTGATCGAGATTTGAGA 58.901 34.615 0.00 0.00 0.00 3.27
2025 2098 8.063038 CAGAAAATGTGATCGAGATTTGAGATC 58.937 37.037 0.00 0.00 40.68 2.75
2026 2099 6.857777 AAATGTGATCGAGATTTGAGATCC 57.142 37.500 0.00 0.00 39.84 3.36
2083 2484 2.744202 CACACTGGATGAGCTGTAAACC 59.256 50.000 0.00 0.00 0.00 3.27
2191 2593 0.890542 GCATGTTGTGTGAGGAGCCA 60.891 55.000 0.00 0.00 0.00 4.75
2212 2614 4.273480 CCAGTAGATTTAGAATTGCCCACG 59.727 45.833 0.00 0.00 0.00 4.94
2365 2767 1.434188 TGCTTCCTCTCCACCAAAGA 58.566 50.000 0.00 0.00 0.00 2.52
2434 2838 4.777896 TCCTATCTGGGTATCCAATACAGC 59.222 45.833 0.00 0.00 43.51 4.40
2595 3009 2.094675 ACTTGACTGCAGCACTTTTGT 58.905 42.857 15.27 0.99 0.00 2.83
2673 3087 9.461312 TTGCCATTCTTATGTGTTCTATAGTTT 57.539 29.630 0.00 0.00 0.00 2.66
2757 3177 7.061094 GCACATTGTAAATAGCAGTGAAAACTC 59.939 37.037 0.00 0.00 0.00 3.01
2780 3200 7.093112 ACTCATTGTCAACTCTAGATTTAGCCT 60.093 37.037 0.00 0.00 0.00 4.58
2904 3324 7.718334 AAAGGGAATAGGTATTCTTGGTTTG 57.282 36.000 9.13 0.00 41.33 2.93
2971 3413 4.953579 TGGGTCTTTTATGGGCTTTCATAC 59.046 41.667 0.00 0.00 30.23 2.39
2987 3429 6.961554 GCTTTCATACAGACCACGAAAAATAG 59.038 38.462 0.00 0.00 0.00 1.73
2990 3432 7.359262 TCATACAGACCACGAAAAATAGTTG 57.641 36.000 0.00 0.00 0.00 3.16
3002 3444 9.863845 CACGAAAAATAGTTGGGGTAAAAATAT 57.136 29.630 0.00 0.00 0.00 1.28
3066 3509 6.260936 GGATCTTCGATGTAACAACCAATGAT 59.739 38.462 0.00 0.00 0.00 2.45
3121 3565 4.084328 CGCTCTAAATATACAAGTGGCAGC 60.084 45.833 0.00 0.00 0.00 5.25
3167 3615 4.357918 AAGCAACTGAGCTAAAGGAAGA 57.642 40.909 0.00 0.00 45.89 2.87
3182 3630 5.468540 AAGGAAGAATTGTGGGCTTAAAC 57.531 39.130 0.00 0.00 0.00 2.01
3315 3763 6.215636 AGCCTAATTAAAGGAAGGACTTGAGA 59.784 38.462 0.00 0.00 39.15 3.27
3402 3856 8.719645 TTAGAAAAGGAAGAATTTGATTCCCA 57.280 30.769 12.09 0.00 45.13 4.37
3413 3867 6.492087 AGAATTTGATTCCCAACTAAAACGGA 59.508 34.615 0.00 0.00 40.13 4.69
3414 3869 5.441709 TTTGATTCCCAACTAAAACGGAC 57.558 39.130 0.00 0.00 33.85 4.79
3418 3873 1.962807 TCCCAACTAAAACGGACGAGA 59.037 47.619 0.00 0.00 0.00 4.04
3445 3900 6.044682 GTCATGGCAATTAAAGGAAGGATTG 58.955 40.000 0.00 0.00 33.71 2.67
3498 3954 5.621329 GCCCAGCAAAGAAAATATAACACGT 60.621 40.000 0.00 0.00 0.00 4.49
3564 4020 1.044725 GCGTTGCAACATGTTCTTCG 58.955 50.000 28.01 12.57 0.00 3.79
3565 4021 1.596954 GCGTTGCAACATGTTCTTCGT 60.597 47.619 28.01 0.00 0.00 3.85
3612 4074 6.167685 ACATTATGCTTGCACAAAACATCAT 58.832 32.000 0.00 0.00 0.00 2.45
3613 4075 6.651643 ACATTATGCTTGCACAAAACATCATT 59.348 30.769 0.00 0.00 0.00 2.57
3788 4252 7.852945 GCACATTTGTACTTTATGCTATCAGAC 59.147 37.037 0.00 0.00 0.00 3.51
3789 4253 8.882736 CACATTTGTACTTTATGCTATCAGACA 58.117 33.333 0.00 0.00 0.00 3.41
3790 4254 9.448438 ACATTTGTACTTTATGCTATCAGACAA 57.552 29.630 0.00 0.00 0.00 3.18
3791 4255 9.926751 CATTTGTACTTTATGCTATCAGACAAG 57.073 33.333 0.00 0.00 0.00 3.16
3792 4256 9.672673 ATTTGTACTTTATGCTATCAGACAAGT 57.327 29.630 0.00 0.00 0.00 3.16
3796 4260 7.783090 ACTTTATGCTATCAGACAAGTCATG 57.217 36.000 2.72 0.00 0.00 3.07
3802 4266 5.416639 TGCTATCAGACAAGTCATGCATTTT 59.583 36.000 0.00 0.00 0.00 1.82
3935 4400 6.126863 TGGAAAGATGAGTGTTGGATTAGT 57.873 37.500 0.00 0.00 0.00 2.24
4022 4487 6.778821 TGGAAAGATGAGTGTTGGATTAGAA 58.221 36.000 0.00 0.00 0.00 2.10
4025 4490 8.743714 GGAAAGATGAGTGTTGGATTAGAAAAT 58.256 33.333 0.00 0.00 0.00 1.82
4082 4547 4.572389 GGCTTGTGGTCTTACTGATATGTG 59.428 45.833 0.00 0.00 0.00 3.21
4512 4978 5.141182 TGGGTCTAGATCTAAGGCAAGTAG 58.859 45.833 2.34 0.00 0.00 2.57
4584 5051 1.803334 GTTGTCACGGGATGCACTAA 58.197 50.000 0.00 0.00 0.00 2.24
4614 5081 4.058721 CCATTGACGTATGGATCAGTCA 57.941 45.455 11.31 0.00 46.63 3.41
4695 5162 4.305539 TTCTTTCTGAATGGAGCATGGA 57.694 40.909 0.00 0.00 0.00 3.41
4730 5197 1.422161 ATAGCAGTGGGCCATCTCCC 61.422 60.000 10.70 0.00 46.50 4.30
4809 5278 4.843728 TCACAGGGATGGAATAGTTTCAC 58.156 43.478 0.00 0.00 33.23 3.18
5018 5487 4.285775 TCACTGTATCAGTTGAACATGGGA 59.714 41.667 0.00 0.00 42.59 4.37
5043 5512 6.000840 TCTAAACTTGTTGGTATGCATGTGA 58.999 36.000 10.16 0.00 0.00 3.58
5044 5513 5.726980 AAACTTGTTGGTATGCATGTGAT 57.273 34.783 10.16 0.00 0.00 3.06
5045 5514 4.707030 ACTTGTTGGTATGCATGTGATG 57.293 40.909 10.16 0.00 0.00 3.07
5046 5515 4.334552 ACTTGTTGGTATGCATGTGATGA 58.665 39.130 10.16 0.00 0.00 2.92
5047 5516 4.766373 ACTTGTTGGTATGCATGTGATGAA 59.234 37.500 10.16 0.00 0.00 2.57
5048 5517 5.243507 ACTTGTTGGTATGCATGTGATGAAA 59.756 36.000 10.16 0.00 0.00 2.69
5049 5518 5.313520 TGTTGGTATGCATGTGATGAAAG 57.686 39.130 10.16 0.00 0.00 2.62
5050 5519 4.766373 TGTTGGTATGCATGTGATGAAAGT 59.234 37.500 10.16 0.00 0.00 2.66
5124 5598 6.432403 TCTGCCACCCTTTCAAAATAAAAT 57.568 33.333 0.00 0.00 0.00 1.82
5127 5601 8.432805 TCTGCCACCCTTTCAAAATAAAATAAA 58.567 29.630 0.00 0.00 0.00 1.40
5128 5602 8.980481 TGCCACCCTTTCAAAATAAAATAAAA 57.020 26.923 0.00 0.00 0.00 1.52
5222 5698 7.531857 TTTGGGCTTATAAGTTGTGAAATGA 57.468 32.000 13.91 0.00 0.00 2.57
5223 5699 7.531857 TTGGGCTTATAAGTTGTGAAATGAA 57.468 32.000 13.91 0.00 0.00 2.57
5224 5700 7.531857 TGGGCTTATAAGTTGTGAAATGAAA 57.468 32.000 13.91 0.00 0.00 2.69
5225 5701 7.957002 TGGGCTTATAAGTTGTGAAATGAAAA 58.043 30.769 13.91 0.00 0.00 2.29
5226 5702 8.424918 TGGGCTTATAAGTTGTGAAATGAAAAA 58.575 29.630 13.91 0.00 0.00 1.94
5227 5703 8.708742 GGGCTTATAAGTTGTGAAATGAAAAAC 58.291 33.333 13.91 0.00 0.00 2.43
5228 5704 9.476202 GGCTTATAAGTTGTGAAATGAAAAACT 57.524 29.630 13.91 0.00 32.60 2.66
5234 5710 8.846943 AAGTTGTGAAATGAAAAACTTTCCTT 57.153 26.923 0.00 0.00 37.72 3.36
5235 5711 8.255394 AGTTGTGAAATGAAAAACTTTCCTTG 57.745 30.769 0.00 0.00 31.74 3.61
5236 5712 7.877612 AGTTGTGAAATGAAAAACTTTCCTTGT 59.122 29.630 0.00 0.00 31.74 3.16
5237 5713 9.145865 GTTGTGAAATGAAAAACTTTCCTTGTA 57.854 29.630 0.00 0.00 31.74 2.41
5238 5714 9.883142 TTGTGAAATGAAAAACTTTCCTTGTAT 57.117 25.926 0.00 0.00 31.74 2.29
5776 6370 3.083997 GAGGTGGAGCCGGTGGAT 61.084 66.667 1.90 0.00 43.70 3.41
6506 7114 0.249911 GTGGCGACCAGACTCTTGTT 60.250 55.000 0.00 0.00 32.34 2.83
6516 7124 2.096069 CAGACTCTTGTTGCAACGATGG 60.096 50.000 23.79 18.15 0.00 3.51
6596 7204 3.361977 CACGGTTTTGCCTCGGGG 61.362 66.667 0.00 0.00 34.25 5.73
6683 7292 2.494918 CCGTTCGGCGATCTTCCT 59.505 61.111 11.76 0.00 44.77 3.36
6697 7306 2.803155 CTTCCTTGGCGCCAGCTGTA 62.803 60.000 30.75 13.97 44.37 2.74
6713 7322 5.416952 CCAGCTGTATCTGATTTTGTCCTTT 59.583 40.000 13.81 0.00 36.19 3.11
6804 7413 2.489938 TGCCCTATGTGTTTCAGTCC 57.510 50.000 0.00 0.00 0.00 3.85
6811 7420 3.524095 ATGTGTTTCAGTCCATGGGAA 57.476 42.857 13.02 4.76 31.38 3.97
6878 7490 3.515602 AACTGGGCAATTCTCTTCTGT 57.484 42.857 0.00 0.00 0.00 3.41
6897 7509 9.261180 TCTTCTGTTTAATTAATAGATGAGGCG 57.739 33.333 16.38 0.00 35.01 5.52
7105 7749 5.840243 TCCCATGCATTCATTAACTCTTG 57.160 39.130 0.00 0.00 0.00 3.02
7159 7804 3.876274 ATACAGCTATAGCCATCGTGG 57.124 47.619 21.17 5.16 43.38 4.94
7177 7822 4.818005 TCGTGGCTTATCGATTCACTACTA 59.182 41.667 1.71 0.00 0.00 1.82
7181 7826 7.169308 CGTGGCTTATCGATTCACTACTAATTT 59.831 37.037 1.71 0.00 0.00 1.82
7479 8139 4.518970 TGGGCTGAAAACTATGACAAAGTC 59.481 41.667 0.00 0.00 0.00 3.01
7602 8262 5.942872 AGCTGTTTCAATCACTAAAATCCG 58.057 37.500 0.00 0.00 0.00 4.18
7733 8393 2.225382 TACAGAGACCAACATCGGGA 57.775 50.000 0.00 0.00 0.00 5.14
7841 8501 2.171237 CCAGTGCTATGATTCAGTGGGA 59.829 50.000 11.25 0.00 45.52 4.37
7961 8621 1.979155 CAGGTCCGGTGAGCTCTCA 60.979 63.158 16.19 0.00 46.08 3.27
8089 8749 1.067846 CCGTGTTCGATTCAGGTCTGA 60.068 52.381 0.00 0.00 39.71 3.27
8094 8754 3.254892 GTTCGATTCAGGTCTGACTTCC 58.745 50.000 7.85 0.00 39.66 3.46
8095 8755 2.525368 TCGATTCAGGTCTGACTTCCA 58.475 47.619 7.85 0.00 39.66 3.53
8127 8787 9.880157 CCCTTATTTGATTTCTTTGTGAATGAT 57.120 29.630 0.00 0.00 34.24 2.45
8136 8797 7.931578 TTTCTTTGTGAATGATATTACCCGT 57.068 32.000 0.00 0.00 34.24 5.28
8142 8803 3.389656 TGAATGATATTACCCGTGAGCCA 59.610 43.478 0.00 0.00 0.00 4.75
8171 8836 2.096980 GGCGTACAGTCCCTAAAATTGC 59.903 50.000 0.00 0.00 0.00 3.56
8176 8841 5.163854 CGTACAGTCCCTAAAATTGCAAGAG 60.164 44.000 4.94 0.00 0.00 2.85
8178 8843 5.006386 ACAGTCCCTAAAATTGCAAGAGAG 58.994 41.667 4.94 0.00 0.00 3.20
8180 8845 5.707298 CAGTCCCTAAAATTGCAAGAGAGAA 59.293 40.000 4.94 0.00 0.00 2.87
8181 8846 6.376581 CAGTCCCTAAAATTGCAAGAGAGAAT 59.623 38.462 4.94 0.00 0.00 2.40
8182 8847 7.554118 CAGTCCCTAAAATTGCAAGAGAGAATA 59.446 37.037 4.94 0.00 0.00 1.75
8183 8848 8.277918 AGTCCCTAAAATTGCAAGAGAGAATAT 58.722 33.333 4.94 0.00 0.00 1.28
8184 8849 9.561069 GTCCCTAAAATTGCAAGAGAGAATATA 57.439 33.333 4.94 0.00 0.00 0.86
8185 8850 9.561069 TCCCTAAAATTGCAAGAGAGAATATAC 57.439 33.333 4.94 0.00 0.00 1.47
8186 8851 9.342308 CCCTAAAATTGCAAGAGAGAATATACA 57.658 33.333 4.94 0.00 0.00 2.29
8190 8855 5.718649 TTGCAAGAGAGAATATACAACGC 57.281 39.130 0.00 0.00 0.00 4.84
8191 8856 5.011090 TGCAAGAGAGAATATACAACGCT 57.989 39.130 0.00 0.00 0.00 5.07
8192 8857 4.805719 TGCAAGAGAGAATATACAACGCTG 59.194 41.667 0.00 0.00 0.00 5.18
8196 8861 5.593010 AGAGAGAATATACAACGCTGGAAC 58.407 41.667 0.00 0.00 0.00 3.62
8207 8872 2.417719 ACGCTGGAACTCAGAAATCAC 58.582 47.619 0.00 0.00 46.18 3.06
8215 8880 7.362401 GCTGGAACTCAGAAATCACAATAACAT 60.362 37.037 0.00 0.00 46.18 2.71
8217 8882 7.665145 TGGAACTCAGAAATCACAATAACATCA 59.335 33.333 0.00 0.00 0.00 3.07
8218 8883 8.180267 GGAACTCAGAAATCACAATAACATCAG 58.820 37.037 0.00 0.00 0.00 2.90
8235 8903 9.793252 ATAACATCAGAATAACAATGCAAGTTC 57.207 29.630 10.71 0.00 0.00 3.01
8236 8904 7.218228 ACATCAGAATAACAATGCAAGTTCA 57.782 32.000 10.71 0.70 0.00 3.18
8247 8915 4.942761 ATGCAAGTTCAGTGAAATGGTT 57.057 36.364 7.25 0.00 0.00 3.67
8248 8916 4.305989 TGCAAGTTCAGTGAAATGGTTC 57.694 40.909 7.25 0.00 0.00 3.62
8255 8923 2.441375 TCAGTGAAATGGTTCCAGTGGA 59.559 45.455 8.12 8.12 32.28 4.02
8256 8924 3.117701 TCAGTGAAATGGTTCCAGTGGAA 60.118 43.478 21.05 21.05 39.66 3.53
8300 8975 3.958147 TGATCATGGCAAGATGCTCAATT 59.042 39.130 10.33 0.00 44.28 2.32
8304 8979 5.838529 TCATGGCAAGATGCTCAATTATTG 58.161 37.500 0.00 0.00 44.28 1.90
8322 8997 2.556144 TGCATGTCTCTTGTTCTGCT 57.444 45.000 0.00 0.00 0.00 4.24
8371 9046 1.762522 ATGCGAGGCTATGGTGGGAG 61.763 60.000 0.00 0.00 0.00 4.30
8377 9052 1.061033 AGGCTATGGTGGGAGGAGAAT 60.061 52.381 0.00 0.00 0.00 2.40
8413 9091 3.157881 TGAACAGTACCTCTGAGACAGG 58.842 50.000 6.17 0.00 46.27 4.00
8449 9127 6.149474 CAGATGAAAACAATACCGAGGACTTT 59.851 38.462 0.00 0.00 0.00 2.66
8472 9150 1.672030 TTGACATGAGCCAGCCGTG 60.672 57.895 0.00 0.00 0.00 4.94
8548 9229 0.601558 GTGTGAGGTGAAGGCGTCTA 59.398 55.000 1.41 0.00 0.00 2.59
8549 9230 0.601558 TGTGAGGTGAAGGCGTCTAC 59.398 55.000 1.41 0.00 0.00 2.59
8578 9259 5.242838 ACTGAACTATACTGATCTGCTAGGC 59.757 44.000 0.00 0.00 0.00 3.93
8579 9260 5.389520 TGAACTATACTGATCTGCTAGGCT 58.610 41.667 0.00 0.00 0.00 4.58
8580 9261 5.475220 TGAACTATACTGATCTGCTAGGCTC 59.525 44.000 0.00 4.24 0.00 4.70
8581 9262 5.255397 ACTATACTGATCTGCTAGGCTCT 57.745 43.478 0.00 0.00 0.00 4.09
8618 9303 2.118313 TCCACATGTTCTCCTGCATG 57.882 50.000 0.00 0.00 45.61 4.06
8626 9311 3.838565 TGTTCTCCTGCATGGGTTTTTA 58.161 40.909 0.00 0.00 36.20 1.52
8693 9378 2.268298 GGTGCGTACTGTGTCATTAGG 58.732 52.381 3.01 0.00 0.00 2.69
8734 9419 2.170187 TGAAACTGTGGCTTGCCAAAAT 59.830 40.909 16.55 0.00 0.00 1.82
8760 9445 0.967380 CCCACCTGGAATGCTGGAAC 60.967 60.000 4.47 0.00 37.39 3.62
8843 9564 1.480205 TCGTTTCGAGTTTCGTCCAC 58.520 50.000 0.00 0.00 41.35 4.02
8851 9572 2.849110 GAGTTTCGTCCACTCGTCTAC 58.151 52.381 0.00 0.00 31.69 2.59
8863 10993 0.108520 TCGTCTACCAATCCAACCGC 60.109 55.000 0.00 0.00 0.00 5.68
8918 14048 2.370445 CGCCCCTGACCCATCTTCT 61.370 63.158 0.00 0.00 0.00 2.85
8934 14064 0.547471 TTCTGCTCCATCTCCCCACA 60.547 55.000 0.00 0.00 0.00 4.17
8996 14127 4.660938 GGTGCCGGGTTTGCCTCT 62.661 66.667 2.18 0.00 34.45 3.69
9007 14138 1.270826 GTTTGCCTCTTTCCTCTTGGC 59.729 52.381 0.00 0.00 43.49 4.52
9054 14185 2.665000 CCTGGACGCCATGAGTGT 59.335 61.111 0.00 0.00 43.60 3.55
9252 14648 3.645975 CGGCGCTTCACGTTTGGT 61.646 61.111 7.64 0.00 46.11 3.67
9359 14756 3.182887 ACAAATGGGGAATTGGCTACA 57.817 42.857 0.00 0.00 0.00 2.74
9360 14757 3.099141 ACAAATGGGGAATTGGCTACAG 58.901 45.455 0.00 0.00 0.00 2.74
9361 14758 2.431782 CAAATGGGGAATTGGCTACAGG 59.568 50.000 0.00 0.00 0.00 4.00
9442 14842 4.202367 GCCTTGGTCCTGCTATGTATAGTT 60.202 45.833 1.28 0.00 32.96 2.24
9457 14857 1.790755 TAGTTGTTGTGGCTGTAGCG 58.209 50.000 0.00 0.00 43.26 4.26
9602 15096 5.293079 GCCTTGAACATTTTGTAAAGTGCAA 59.707 36.000 0.00 0.00 31.52 4.08
9633 15127 5.103982 TGGATCCCATTGCTCATAAGAAGAA 60.104 40.000 9.90 0.00 0.00 2.52
9634 15128 5.472820 GGATCCCATTGCTCATAAGAAGAAG 59.527 44.000 0.00 0.00 0.00 2.85
9635 15129 5.698741 TCCCATTGCTCATAAGAAGAAGA 57.301 39.130 0.00 0.00 0.00 2.87
9644 15138 4.686972 TCATAAGAAGAAGATGCCGACAG 58.313 43.478 0.00 0.00 0.00 3.51
9663 18328 3.058224 ACAGAACGAATTTTACTGCAGGC 60.058 43.478 19.93 0.00 32.67 4.85
9667 18332 2.484264 ACGAATTTTACTGCAGGCTGTC 59.516 45.455 19.93 9.10 0.00 3.51
9687 18352 4.458989 TGTCCAATGCTTTGTACTCCATTC 59.541 41.667 11.03 0.00 0.00 2.67
9718 18383 0.330604 AGACATGCAGCATGGGAACT 59.669 50.000 33.75 23.75 45.16 3.01
9720 18385 0.892755 ACATGCAGCATGGGAACTTG 59.107 50.000 33.75 12.92 45.16 3.16
9731 18396 5.192327 CATGGGAACTTGCAATAAGGATC 57.808 43.478 0.00 0.00 0.00 3.36
9732 18397 3.631250 TGGGAACTTGCAATAAGGATCC 58.369 45.455 2.48 2.48 0.00 3.36
9734 18399 3.381590 GGGAACTTGCAATAAGGATCCAC 59.618 47.826 15.82 0.00 32.39 4.02
9735 18400 3.065371 GGAACTTGCAATAAGGATCCACG 59.935 47.826 15.82 0.00 31.61 4.94
9736 18401 2.643551 ACTTGCAATAAGGATCCACGG 58.356 47.619 15.82 0.00 0.00 4.94
9737 18402 2.238646 ACTTGCAATAAGGATCCACGGA 59.761 45.455 15.82 0.00 0.00 4.69
9738 18403 2.325583 TGCAATAAGGATCCACGGAC 57.674 50.000 15.82 0.00 0.00 4.79
9740 18405 2.213499 GCAATAAGGATCCACGGACAG 58.787 52.381 15.82 0.00 0.00 3.51
9742 18407 0.759346 ATAAGGATCCACGGACAGGC 59.241 55.000 15.82 0.00 0.00 4.85
9756 31832 3.003173 AGGCGCAGTCCCAAGCTA 61.003 61.111 10.83 0.00 0.00 3.32
9758 31834 2.820037 GCGCAGTCCCAAGCTACC 60.820 66.667 0.30 0.00 0.00 3.18
9761 31837 1.377333 GCAGTCCCAAGCTACCCAC 60.377 63.158 0.00 0.00 0.00 4.61
9762 31838 2.066340 CAGTCCCAAGCTACCCACA 58.934 57.895 0.00 0.00 0.00 4.17
9764 31840 1.002502 GTCCCAAGCTACCCACACC 60.003 63.158 0.00 0.00 0.00 4.16
9765 31841 2.228480 TCCCAAGCTACCCACACCC 61.228 63.158 0.00 0.00 0.00 4.61
9766 31842 2.355115 CCAAGCTACCCACACCCC 59.645 66.667 0.00 0.00 0.00 4.95
9767 31843 2.046314 CAAGCTACCCACACCCCG 60.046 66.667 0.00 0.00 0.00 5.73
9768 31844 3.327404 AAGCTACCCACACCCCGG 61.327 66.667 0.00 0.00 0.00 5.73
9770 31846 4.091939 GCTACCCACACCCCGGTC 62.092 72.222 0.00 0.00 33.36 4.79
9772 31848 1.916777 CTACCCACACCCCGGTCTT 60.917 63.158 0.00 0.00 33.36 3.01
9774 31850 1.770749 TACCCACACCCCGGTCTTTG 61.771 60.000 0.00 0.00 33.36 2.77
9776 31852 1.152839 CCACACCCCGGTCTTTGTT 60.153 57.895 0.00 0.00 0.00 2.83
9777 31853 1.170290 CCACACCCCGGTCTTTGTTC 61.170 60.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.141881 CTCCCTCCGTCCACGAATG 59.858 63.158 0.00 0.00 43.02 2.67
1 2 0.033796 TACTCCCTCCGTCCACGAAT 60.034 55.000 0.00 0.00 43.02 3.34
6 7 0.255318 GAGTCTACTCCCTCCGTCCA 59.745 60.000 0.00 0.00 37.02 4.02
8 9 2.351706 ATGAGTCTACTCCCTCCGTC 57.648 55.000 7.63 0.00 42.20 4.79
9 10 4.145807 CAATATGAGTCTACTCCCTCCGT 58.854 47.826 7.63 0.00 42.20 4.69
10 11 4.145807 ACAATATGAGTCTACTCCCTCCG 58.854 47.826 7.63 0.00 42.20 4.63
11 12 7.451877 TCAATACAATATGAGTCTACTCCCTCC 59.548 40.741 7.63 0.00 42.20 4.30
12 13 8.410673 TCAATACAATATGAGTCTACTCCCTC 57.589 38.462 7.63 0.00 42.20 4.30
13 14 8.228206 TCTCAATACAATATGAGTCTACTCCCT 58.772 37.037 7.63 0.00 42.86 4.20
14 15 8.301002 GTCTCAATACAATATGAGTCTACTCCC 58.699 40.741 7.63 0.00 42.86 4.30
15 16 8.851145 TGTCTCAATACAATATGAGTCTACTCC 58.149 37.037 7.63 0.00 42.86 3.85
18 19 9.973450 ACATGTCTCAATACAATATGAGTCTAC 57.027 33.333 0.00 0.00 42.86 2.59
19 20 9.971922 CACATGTCTCAATACAATATGAGTCTA 57.028 33.333 0.00 0.00 42.86 2.59
20 21 8.699130 TCACATGTCTCAATACAATATGAGTCT 58.301 33.333 0.00 0.00 42.86 3.24
21 22 8.877808 TCACATGTCTCAATACAATATGAGTC 57.122 34.615 0.00 0.00 42.86 3.36
22 23 9.269453 CATCACATGTCTCAATACAATATGAGT 57.731 33.333 0.00 0.00 42.86 3.41
23 24 9.269453 ACATCACATGTCTCAATACAATATGAG 57.731 33.333 0.00 0.00 39.92 2.90
24 25 9.617523 AACATCACATGTCTCAATACAATATGA 57.382 29.630 0.00 0.00 44.07 2.15
27 28 9.883142 TGTAACATCACATGTCTCAATACAATA 57.117 29.630 0.00 0.00 44.07 1.90
28 29 8.791327 TGTAACATCACATGTCTCAATACAAT 57.209 30.769 0.00 0.00 44.07 2.71
29 30 7.877612 ACTGTAACATCACATGTCTCAATACAA 59.122 33.333 0.00 0.00 44.07 2.41
30 31 7.386059 ACTGTAACATCACATGTCTCAATACA 58.614 34.615 0.00 2.98 44.07 2.29
31 32 7.834068 ACTGTAACATCACATGTCTCAATAC 57.166 36.000 0.00 0.00 44.07 1.89
32 33 9.366216 GTTACTGTAACATCACATGTCTCAATA 57.634 33.333 22.30 0.00 44.07 1.90
33 34 8.097038 AGTTACTGTAACATCACATGTCTCAAT 58.903 33.333 27.12 3.45 44.07 2.57
34 35 7.441836 AGTTACTGTAACATCACATGTCTCAA 58.558 34.615 27.12 0.00 44.07 3.02
35 36 6.993079 AGTTACTGTAACATCACATGTCTCA 58.007 36.000 27.12 0.00 44.07 3.27
36 37 8.861101 GTTAGTTACTGTAACATCACATGTCTC 58.139 37.037 27.12 1.55 44.07 3.36
37 38 8.585881 AGTTAGTTACTGTAACATCACATGTCT 58.414 33.333 27.12 9.43 37.96 3.41
38 39 8.758633 AGTTAGTTACTGTAACATCACATGTC 57.241 34.615 27.12 10.44 37.96 3.06
57 58 9.544579 AGGGATAGTTTGAGTAACTTAGTTAGT 57.455 33.333 11.79 11.79 44.73 2.24
59 60 9.765295 AGAGGGATAGTTTGAGTAACTTAGTTA 57.235 33.333 0.03 0.03 44.73 2.24
60 61 8.667592 AGAGGGATAGTTTGAGTAACTTAGTT 57.332 34.615 2.32 2.32 44.73 2.24
61 62 7.342541 GGAGAGGGATAGTTTGAGTAACTTAGT 59.657 40.741 0.00 0.00 44.73 2.24
62 63 7.562088 AGGAGAGGGATAGTTTGAGTAACTTAG 59.438 40.741 0.00 0.00 44.73 2.18
63 64 7.420029 AGGAGAGGGATAGTTTGAGTAACTTA 58.580 38.462 0.00 0.00 44.73 2.24
64 65 6.265304 AGGAGAGGGATAGTTTGAGTAACTT 58.735 40.000 0.00 0.00 44.73 2.66
66 67 5.657302 TGAGGAGAGGGATAGTTTGAGTAAC 59.343 44.000 0.00 0.00 36.99 2.50
67 68 5.838955 TGAGGAGAGGGATAGTTTGAGTAA 58.161 41.667 0.00 0.00 0.00 2.24
68 69 5.467668 TGAGGAGAGGGATAGTTTGAGTA 57.532 43.478 0.00 0.00 0.00 2.59
69 70 4.338795 TGAGGAGAGGGATAGTTTGAGT 57.661 45.455 0.00 0.00 0.00 3.41
70 71 5.885449 AATGAGGAGAGGGATAGTTTGAG 57.115 43.478 0.00 0.00 0.00 3.02
71 72 6.903534 AGTTAATGAGGAGAGGGATAGTTTGA 59.096 38.462 0.00 0.00 0.00 2.69
72 73 7.130681 AGTTAATGAGGAGAGGGATAGTTTG 57.869 40.000 0.00 0.00 0.00 2.93
73 74 6.903534 TGAGTTAATGAGGAGAGGGATAGTTT 59.096 38.462 0.00 0.00 0.00 2.66
74 75 6.444704 TGAGTTAATGAGGAGAGGGATAGTT 58.555 40.000 0.00 0.00 0.00 2.24
75 76 6.031964 TGAGTTAATGAGGAGAGGGATAGT 57.968 41.667 0.00 0.00 0.00 2.12
76 77 7.234371 TCAATGAGTTAATGAGGAGAGGGATAG 59.766 40.741 0.00 0.00 0.00 2.08
77 78 7.075797 TCAATGAGTTAATGAGGAGAGGGATA 58.924 38.462 0.00 0.00 0.00 2.59
78 79 5.907662 TCAATGAGTTAATGAGGAGAGGGAT 59.092 40.000 0.00 0.00 0.00 3.85
79 80 5.280499 TCAATGAGTTAATGAGGAGAGGGA 58.720 41.667 0.00 0.00 0.00 4.20
80 81 5.620738 TCAATGAGTTAATGAGGAGAGGG 57.379 43.478 0.00 0.00 0.00 4.30
81 82 7.730084 TGTATCAATGAGTTAATGAGGAGAGG 58.270 38.462 0.00 0.00 0.00 3.69
85 86 9.494271 GCTTATGTATCAATGAGTTAATGAGGA 57.506 33.333 0.00 0.00 0.00 3.71
86 87 9.276590 TGCTTATGTATCAATGAGTTAATGAGG 57.723 33.333 0.00 0.00 0.00 3.86
99 100 9.979578 AACTCAACAAATTTGCTTATGTATCAA 57.020 25.926 18.12 0.00 0.00 2.57
100 101 9.409312 CAACTCAACAAATTTGCTTATGTATCA 57.591 29.630 18.12 0.00 0.00 2.15
101 102 8.863049 CCAACTCAACAAATTTGCTTATGTATC 58.137 33.333 18.12 0.00 0.00 2.24
102 103 8.584157 TCCAACTCAACAAATTTGCTTATGTAT 58.416 29.630 18.12 3.37 0.00 2.29
103 104 7.865385 GTCCAACTCAACAAATTTGCTTATGTA 59.135 33.333 18.12 0.00 0.00 2.29
104 105 6.701400 GTCCAACTCAACAAATTTGCTTATGT 59.299 34.615 18.12 8.10 0.00 2.29
105 106 6.925165 AGTCCAACTCAACAAATTTGCTTATG 59.075 34.615 18.12 11.76 0.00 1.90
106 107 7.054491 AGTCCAACTCAACAAATTTGCTTAT 57.946 32.000 18.12 0.00 0.00 1.73
107 108 6.463995 AGTCCAACTCAACAAATTTGCTTA 57.536 33.333 18.12 2.71 0.00 3.09
108 109 5.343307 AGTCCAACTCAACAAATTTGCTT 57.657 34.783 18.12 8.82 0.00 3.91
109 110 4.498009 CGAGTCCAACTCAACAAATTTGCT 60.498 41.667 18.12 2.78 45.30 3.91
110 111 3.730715 CGAGTCCAACTCAACAAATTTGC 59.269 43.478 18.12 0.00 45.30 3.68
111 112 5.168526 TCGAGTCCAACTCAACAAATTTG 57.831 39.130 16.67 16.67 45.30 2.32
112 113 5.299279 ACATCGAGTCCAACTCAACAAATTT 59.701 36.000 7.78 0.00 45.30 1.82
113 114 4.821805 ACATCGAGTCCAACTCAACAAATT 59.178 37.500 7.78 0.00 45.30 1.82
114 115 4.389374 ACATCGAGTCCAACTCAACAAAT 58.611 39.130 7.78 0.00 45.30 2.32
115 116 3.804036 ACATCGAGTCCAACTCAACAAA 58.196 40.909 7.78 0.00 45.30 2.83
116 117 3.469008 ACATCGAGTCCAACTCAACAA 57.531 42.857 7.78 0.00 45.30 2.83
117 118 3.469008 AACATCGAGTCCAACTCAACA 57.531 42.857 7.78 0.00 45.30 3.33
118 119 4.386049 CAGTAACATCGAGTCCAACTCAAC 59.614 45.833 7.78 0.00 45.30 3.18
119 120 4.556233 CAGTAACATCGAGTCCAACTCAA 58.444 43.478 7.78 0.00 45.30 3.02
120 121 3.614150 GCAGTAACATCGAGTCCAACTCA 60.614 47.826 7.78 0.00 45.30 3.41
121 122 2.924290 GCAGTAACATCGAGTCCAACTC 59.076 50.000 0.00 0.00 41.71 3.01
122 123 2.563179 AGCAGTAACATCGAGTCCAACT 59.437 45.455 0.00 0.00 0.00 3.16
123 124 2.960819 AGCAGTAACATCGAGTCCAAC 58.039 47.619 0.00 0.00 0.00 3.77
124 125 4.794278 TTAGCAGTAACATCGAGTCCAA 57.206 40.909 0.00 0.00 0.00 3.53
125 126 4.219944 ACTTTAGCAGTAACATCGAGTCCA 59.780 41.667 0.00 0.00 31.97 4.02
126 127 4.745649 ACTTTAGCAGTAACATCGAGTCC 58.254 43.478 0.00 0.00 31.97 3.85
127 128 7.541437 ACTTAACTTTAGCAGTAACATCGAGTC 59.459 37.037 0.00 0.00 32.94 3.36
128 129 7.376615 ACTTAACTTTAGCAGTAACATCGAGT 58.623 34.615 0.00 0.00 32.94 4.18
129 130 7.813852 ACTTAACTTTAGCAGTAACATCGAG 57.186 36.000 0.00 0.00 32.94 4.04
130 131 9.865321 ATAACTTAACTTTAGCAGTAACATCGA 57.135 29.630 0.00 0.00 32.94 3.59
136 137 8.961092 CGCGATATAACTTAACTTTAGCAGTAA 58.039 33.333 0.00 0.00 32.94 2.24
137 138 7.592533 CCGCGATATAACTTAACTTTAGCAGTA 59.407 37.037 8.23 0.00 32.94 2.74
138 139 6.420008 CCGCGATATAACTTAACTTTAGCAGT 59.580 38.462 8.23 0.00 37.30 4.40
139 140 6.128902 CCCGCGATATAACTTAACTTTAGCAG 60.129 42.308 8.23 0.00 0.00 4.24
140 141 5.693104 CCCGCGATATAACTTAACTTTAGCA 59.307 40.000 8.23 0.00 0.00 3.49
141 142 5.693555 ACCCGCGATATAACTTAACTTTAGC 59.306 40.000 8.23 0.00 0.00 3.09
142 143 7.144000 AGACCCGCGATATAACTTAACTTTAG 58.856 38.462 8.23 0.00 0.00 1.85
143 144 7.042797 AGACCCGCGATATAACTTAACTTTA 57.957 36.000 8.23 0.00 0.00 1.85
144 145 5.910614 AGACCCGCGATATAACTTAACTTT 58.089 37.500 8.23 0.00 0.00 2.66
145 146 5.526506 AGACCCGCGATATAACTTAACTT 57.473 39.130 8.23 0.00 0.00 2.66
146 147 5.526506 AAGACCCGCGATATAACTTAACT 57.473 39.130 8.23 0.00 0.00 2.24
147 148 6.416514 CAAAAGACCCGCGATATAACTTAAC 58.583 40.000 8.23 0.00 0.00 2.01
148 149 5.524646 CCAAAAGACCCGCGATATAACTTAA 59.475 40.000 8.23 0.00 0.00 1.85
149 150 5.051816 CCAAAAGACCCGCGATATAACTTA 58.948 41.667 8.23 0.00 0.00 2.24
150 151 3.875134 CCAAAAGACCCGCGATATAACTT 59.125 43.478 8.23 1.32 0.00 2.66
151 152 3.133362 TCCAAAAGACCCGCGATATAACT 59.867 43.478 8.23 0.00 0.00 2.24
152 153 3.460103 TCCAAAAGACCCGCGATATAAC 58.540 45.455 8.23 0.00 0.00 1.89
153 154 3.823281 TCCAAAAGACCCGCGATATAA 57.177 42.857 8.23 0.00 0.00 0.98
154 155 3.823281 TTCCAAAAGACCCGCGATATA 57.177 42.857 8.23 0.00 0.00 0.86
155 156 2.681344 GTTTCCAAAAGACCCGCGATAT 59.319 45.455 8.23 0.00 0.00 1.63
156 157 2.078392 GTTTCCAAAAGACCCGCGATA 58.922 47.619 8.23 0.00 0.00 2.92
157 158 0.879090 GTTTCCAAAAGACCCGCGAT 59.121 50.000 8.23 0.00 0.00 4.58
158 159 1.500512 CGTTTCCAAAAGACCCGCGA 61.501 55.000 8.23 0.00 0.00 5.87
159 160 1.082366 CGTTTCCAAAAGACCCGCG 60.082 57.895 0.00 0.00 0.00 6.46
160 161 1.284715 CCGTTTCCAAAAGACCCGC 59.715 57.895 0.00 0.00 0.00 6.13
161 162 0.589708 GACCGTTTCCAAAAGACCCG 59.410 55.000 0.00 0.00 0.00 5.28
162 163 0.589708 CGACCGTTTCCAAAAGACCC 59.410 55.000 0.00 0.00 0.00 4.46
163 164 1.585297 TCGACCGTTTCCAAAAGACC 58.415 50.000 0.00 0.00 0.00 3.85
171 172 1.463444 CCACAAGAATCGACCGTTTCC 59.537 52.381 8.94 0.00 0.00 3.13
199 200 0.886490 CCTCCGTGCATTCTATGGGC 60.886 60.000 0.00 0.00 0.00 5.36
200 201 0.886490 GCCTCCGTGCATTCTATGGG 60.886 60.000 0.00 0.00 0.00 4.00
203 206 4.758692 CGCCTCCGTGCATTCTAT 57.241 55.556 0.00 0.00 0.00 1.98
254 257 4.010667 ACTAGTTTGATTGCCACCGTTA 57.989 40.909 0.00 0.00 0.00 3.18
277 280 1.334869 GCGCCTGGTTTTGGATCATAG 59.665 52.381 0.00 0.00 0.00 2.23
278 281 1.388547 GCGCCTGGTTTTGGATCATA 58.611 50.000 0.00 0.00 0.00 2.15
395 398 7.315142 CCGGGGGTTAATTTTAACTTAAGTTC 58.685 38.462 23.76 7.42 42.00 3.01
416 419 1.202770 GGTTTCATATGGACTCCCGGG 60.203 57.143 16.85 16.85 34.29 5.73
447 450 6.071952 TGAGGAGTGCAATTTTTCCTTCATAC 60.072 38.462 0.00 0.00 40.07 2.39
448 451 6.009589 TGAGGAGTGCAATTTTTCCTTCATA 58.990 36.000 0.00 0.00 40.07 2.15
463 469 1.600663 CGGATATGTCGTGAGGAGTGC 60.601 57.143 0.00 0.00 0.00 4.40
487 493 1.266989 GTGAAAAGGGTGAGGCGAAAG 59.733 52.381 0.00 0.00 0.00 2.62
518 524 2.113774 GACGGGGGTTCGGGTTTT 59.886 61.111 0.00 0.00 0.00 2.43
519 525 4.318949 CGACGGGGGTTCGGGTTT 62.319 66.667 0.00 0.00 32.66 3.27
556 581 1.594862 CAGCGGCAATAGTAGCAGAAC 59.405 52.381 1.45 0.00 0.00 3.01
557 582 1.939974 CAGCGGCAATAGTAGCAGAA 58.060 50.000 1.45 0.00 0.00 3.02
559 584 0.531532 AGCAGCGGCAATAGTAGCAG 60.532 55.000 12.44 0.00 44.61 4.24
560 585 0.750249 TAGCAGCGGCAATAGTAGCA 59.250 50.000 12.44 0.00 44.61 3.49
561 586 1.140816 GTAGCAGCGGCAATAGTAGC 58.859 55.000 12.44 0.00 44.61 3.58
605 634 2.512974 GCCATTGCCATTGCCAGC 60.513 61.111 0.00 0.00 36.33 4.85
606 635 0.107410 ATTGCCATTGCCATTGCCAG 60.107 50.000 0.00 0.00 36.33 4.85
607 636 0.393132 CATTGCCATTGCCATTGCCA 60.393 50.000 0.00 0.00 36.33 4.92
608 637 1.098712 CCATTGCCATTGCCATTGCC 61.099 55.000 0.00 0.00 36.33 4.52
611 640 0.328592 TTGCCATTGCCATTGCCATT 59.671 45.000 0.00 0.00 36.33 3.16
612 641 0.548989 ATTGCCATTGCCATTGCCAT 59.451 45.000 0.00 0.00 36.33 4.40
613 642 0.393132 CATTGCCATTGCCATTGCCA 60.393 50.000 0.00 0.00 36.33 4.92
614 643 1.098712 CCATTGCCATTGCCATTGCC 61.099 55.000 0.00 0.00 36.33 4.52
615 644 1.720694 GCCATTGCCATTGCCATTGC 61.721 55.000 0.00 0.00 36.33 3.56
616 645 2.399856 GCCATTGCCATTGCCATTG 58.600 52.632 0.00 0.00 36.33 2.82
617 646 4.968370 GCCATTGCCATTGCCATT 57.032 50.000 0.00 0.00 36.33 3.16
635 664 1.135915 CTGGCAGGAGTAGCAGTACTG 59.864 57.143 18.93 18.93 39.78 2.74
759 793 2.766970 TTTAATTTATGGAGCGGCGC 57.233 45.000 26.86 26.86 0.00 6.53
963 1014 3.505184 CGCGCGGCCTTAAATGGT 61.505 61.111 24.84 0.00 0.00 3.55
1232 1290 4.415150 ATGCAGGCACAGTCCCGG 62.415 66.667 0.00 0.00 0.00 5.73
1334 1393 7.959651 CAGACAGATTCAGACGAATTTAAAAGG 59.040 37.037 0.00 0.00 42.06 3.11
1335 1394 7.959651 CCAGACAGATTCAGACGAATTTAAAAG 59.040 37.037 0.00 0.00 42.06 2.27
1340 1399 5.152623 TCCAGACAGATTCAGACGAATTT 57.847 39.130 0.00 0.00 42.06 1.82
1598 1657 2.707849 TAGTGGAAGCGGTCGGAGC 61.708 63.158 0.00 0.00 0.00 4.70
1710 1769 1.758906 CCCGTCCTCCTCCTCTTCC 60.759 68.421 0.00 0.00 0.00 3.46
1898 1969 5.181009 CAATCAGAGTAATGCACTGGAGAA 58.819 41.667 0.00 0.00 37.72 2.87
1899 1970 4.763073 CAATCAGAGTAATGCACTGGAGA 58.237 43.478 0.00 0.00 37.72 3.71
1922 1993 4.392754 GCCAACAAAATATTTTCCAGCCAG 59.607 41.667 10.53 1.11 0.00 4.85
1936 2007 9.092876 CTGAAAATGTAAACTAAGCCAACAAAA 57.907 29.630 0.00 0.00 0.00 2.44
1998 2071 7.099120 TCTCAAATCTCGATCACATTTTCTGA 58.901 34.615 0.00 0.00 0.00 3.27
1999 2072 7.299787 TCTCAAATCTCGATCACATTTTCTG 57.700 36.000 0.00 0.00 0.00 3.02
2002 2075 7.052873 AGGATCTCAAATCTCGATCACATTTT 58.947 34.615 0.00 0.00 36.22 1.82
2004 2077 6.172136 AGGATCTCAAATCTCGATCACATT 57.828 37.500 0.00 0.00 36.22 2.71
2006 2079 4.038522 GGAGGATCTCAAATCTCGATCACA 59.961 45.833 0.00 0.00 36.22 3.58
2007 2080 4.280677 AGGAGGATCTCAAATCTCGATCAC 59.719 45.833 0.00 0.00 36.22 3.06
2008 2081 4.478203 AGGAGGATCTCAAATCTCGATCA 58.522 43.478 0.00 0.00 36.22 2.92
2009 2082 6.773976 ATAGGAGGATCTCAAATCTCGATC 57.226 41.667 0.00 0.00 34.30 3.69
2083 2484 2.030457 GTCAATACGCCAGATTGTTCCG 59.970 50.000 0.00 0.00 36.02 4.30
2098 2499 7.633018 ATGAGGGCCTATTCTAAAGTCAATA 57.367 36.000 5.73 0.00 0.00 1.90
2191 2593 3.877508 GCGTGGGCAATTCTAAATCTACT 59.122 43.478 0.00 0.00 39.62 2.57
2212 2614 5.229423 CACTGGAGCTTCTATGATTCTAGC 58.771 45.833 0.00 0.00 0.00 3.42
2365 2767 6.213600 GTGTCTATCCCATGATAATACCACCT 59.786 42.308 0.00 0.00 33.13 4.00
2434 2838 5.356882 TCCAACGTCTTTCAATTAAGCTG 57.643 39.130 0.00 0.00 0.00 4.24
2575 2989 2.094675 ACAAAAGTGCTGCAGTCAAGT 58.905 42.857 16.64 6.63 0.00 3.16
2632 3046 1.203112 TGGCAAAATAGGGTGGCAGAA 60.203 47.619 0.00 0.00 44.48 3.02
2757 3177 6.481644 GGAGGCTAAATCTAGAGTTGACAATG 59.518 42.308 15.45 0.86 0.00 2.82
2789 3209 3.782523 TCTAGAATTCAACCTGGCTGGAT 59.217 43.478 18.12 1.70 39.71 3.41
2904 3324 5.506815 CCCAGAAAACGAAAAGGACTAAACC 60.507 44.000 0.00 0.00 0.00 3.27
2971 3413 3.190535 CCCCAACTATTTTTCGTGGTCTG 59.809 47.826 0.00 0.00 0.00 3.51
2990 3432 8.147704 CCCACAATGTTGATATATTTTTACCCC 58.852 37.037 0.00 0.00 0.00 4.95
3002 3444 6.662663 TGTGATCAATTCCCACAATGTTGATA 59.337 34.615 0.00 0.00 39.03 2.15
3152 3596 4.397417 CCCACAATTCTTCCTTTAGCTCAG 59.603 45.833 0.00 0.00 0.00 3.35
3414 3869 4.334443 CTTTAATTGCCATGACGTTCTCG 58.666 43.478 0.00 0.00 43.34 4.04
3418 3873 4.082245 CCTTCCTTTAATTGCCATGACGTT 60.082 41.667 0.00 0.00 0.00 3.99
3445 3900 9.606631 AATCTCTCACTGATTCCATTTAAGTAC 57.393 33.333 0.00 0.00 29.09 2.73
3564 4020 3.123804 CACAGCACCGGATTCACTATAC 58.876 50.000 9.46 0.00 0.00 1.47
3565 4021 2.102420 CCACAGCACCGGATTCACTATA 59.898 50.000 9.46 0.00 0.00 1.31
3657 4121 3.181465 GGACAACTGACATGATCCCGTAT 60.181 47.826 0.00 0.00 0.00 3.06
3730 4194 4.757019 TGCCCGTCATAGTATTGGTAAA 57.243 40.909 0.00 0.00 0.00 2.01
3788 4252 3.673338 CAGCACAGAAAATGCATGACTTG 59.327 43.478 0.00 0.00 45.92 3.16
3789 4253 3.305813 CCAGCACAGAAAATGCATGACTT 60.306 43.478 0.00 0.00 45.92 3.01
3790 4254 2.230508 CCAGCACAGAAAATGCATGACT 59.769 45.455 0.00 0.00 45.92 3.41
3791 4255 2.602878 CCAGCACAGAAAATGCATGAC 58.397 47.619 0.00 0.00 45.92 3.06
3792 4256 1.067425 GCCAGCACAGAAAATGCATGA 60.067 47.619 0.00 0.00 45.92 3.07
3796 4260 1.730064 CATTGCCAGCACAGAAAATGC 59.270 47.619 0.00 0.00 43.74 3.56
3802 4266 0.689055 AGAGTCATTGCCAGCACAGA 59.311 50.000 0.00 0.00 0.00 3.41
3935 4400 8.310382 CAAAGAAGAGAGAGGATCAGAACTTTA 58.690 37.037 0.00 0.00 37.82 1.85
4022 4487 6.889595 AAGAAGAGAGAGGATCAGGAATTT 57.110 37.500 0.00 0.00 37.82 1.82
4025 4490 4.469227 CCAAAGAAGAGAGAGGATCAGGAA 59.531 45.833 0.00 0.00 37.82 3.36
4027 4492 3.432046 GCCAAAGAAGAGAGAGGATCAGG 60.432 52.174 0.00 0.00 37.82 3.86
4082 4547 0.321122 CAGTGCAGAGAGACCCAACC 60.321 60.000 0.00 0.00 0.00 3.77
4428 4894 4.392138 GTCCAGCTAGTGTTTCAACCATAC 59.608 45.833 0.00 0.00 0.00 2.39
4614 5081 4.036027 CGGCAGATCTGAAGCACATTAATT 59.964 41.667 27.04 0.00 0.00 1.40
4695 5162 6.072508 CCACTGCTATCAATTTACTGTGTTGT 60.073 38.462 0.00 0.00 0.00 3.32
4730 5197 0.947244 GGCAGGACACACAAACAGAG 59.053 55.000 0.00 0.00 0.00 3.35
4809 5278 6.473397 AACAATCTGTAAAGCGAGAAGAAG 57.527 37.500 0.00 0.00 0.00 2.85
4849 5318 6.438620 AGGAAAGCCTTAGATGGATGAAATT 58.561 36.000 0.00 0.00 43.90 1.82
5018 5487 6.658816 TCACATGCATACCAACAAGTTTAGAT 59.341 34.615 0.00 0.00 0.00 1.98
5043 5512 5.353678 GCAGAGCTCTGTTTCATACTTTCAT 59.646 40.000 37.25 0.00 45.45 2.57
5044 5513 4.692625 GCAGAGCTCTGTTTCATACTTTCA 59.307 41.667 37.25 0.00 45.45 2.69
5045 5514 4.692625 TGCAGAGCTCTGTTTCATACTTTC 59.307 41.667 37.25 20.29 45.45 2.62
5046 5515 4.645535 TGCAGAGCTCTGTTTCATACTTT 58.354 39.130 37.25 1.37 45.45 2.66
5047 5516 4.277515 TGCAGAGCTCTGTTTCATACTT 57.722 40.909 37.25 1.59 45.45 2.24
5048 5517 3.969287 TGCAGAGCTCTGTTTCATACT 57.031 42.857 37.25 2.14 45.45 2.12
5049 5518 5.595885 TCTATGCAGAGCTCTGTTTCATAC 58.404 41.667 37.25 22.64 45.45 2.39
5050 5519 5.859205 TCTATGCAGAGCTCTGTTTCATA 57.141 39.130 37.25 31.36 45.45 2.15
5101 5570 5.878406 TTTTATTTTGAAAGGGTGGCAGA 57.122 34.783 0.00 0.00 0.00 4.26
5124 5598 4.258543 GCCTGGCAGTACATGTAGTTTTA 58.741 43.478 15.17 0.00 0.00 1.52
5127 5601 1.628340 TGCCTGGCAGTACATGTAGTT 59.372 47.619 19.30 0.00 33.32 2.24
5128 5602 1.275666 TGCCTGGCAGTACATGTAGT 58.724 50.000 19.30 6.60 33.32 2.73
5169 5643 6.624352 TGCTATTCCTATGCATCAGTTTTC 57.376 37.500 0.19 0.00 0.00 2.29
5245 5721 8.262227 TCCGAACATAACTCAAGGTAATGTTAT 58.738 33.333 0.00 0.00 40.02 1.89
5246 5722 7.613585 TCCGAACATAACTCAAGGTAATGTTA 58.386 34.615 0.00 0.00 40.02 2.41
5247 5723 6.469410 TCCGAACATAACTCAAGGTAATGTT 58.531 36.000 0.00 0.00 41.98 2.71
5248 5724 6.045072 TCCGAACATAACTCAAGGTAATGT 57.955 37.500 0.00 0.00 32.32 2.71
5249 5725 5.006746 GCTCCGAACATAACTCAAGGTAATG 59.993 44.000 0.00 0.00 0.00 1.90
5250 5726 5.104900 AGCTCCGAACATAACTCAAGGTAAT 60.105 40.000 0.00 0.00 0.00 1.89
5251 5727 4.222145 AGCTCCGAACATAACTCAAGGTAA 59.778 41.667 0.00 0.00 0.00 2.85
5252 5728 3.767673 AGCTCCGAACATAACTCAAGGTA 59.232 43.478 0.00 0.00 0.00 3.08
5253 5729 2.567615 AGCTCCGAACATAACTCAAGGT 59.432 45.455 0.00 0.00 0.00 3.50
5254 5730 3.190874 GAGCTCCGAACATAACTCAAGG 58.809 50.000 0.87 0.00 0.00 3.61
5255 5731 3.118956 AGGAGCTCCGAACATAACTCAAG 60.119 47.826 26.95 0.00 42.08 3.02
5256 5732 2.832129 AGGAGCTCCGAACATAACTCAA 59.168 45.455 26.95 0.00 42.08 3.02
5257 5733 2.427453 GAGGAGCTCCGAACATAACTCA 59.573 50.000 26.95 0.00 42.08 3.41
5258 5734 2.541999 CGAGGAGCTCCGAACATAACTC 60.542 54.545 26.95 14.20 42.08 3.01
5259 5735 1.405821 CGAGGAGCTCCGAACATAACT 59.594 52.381 26.95 6.05 42.08 2.24
5260 5736 1.536284 CCGAGGAGCTCCGAACATAAC 60.536 57.143 26.95 10.70 42.08 1.89
5401 5877 0.545548 AGAAGGAAAGAGACCCCGCT 60.546 55.000 0.00 0.00 0.00 5.52
5589 6065 1.077930 CAGGCCACAGATCCACCAG 60.078 63.158 5.01 0.00 0.00 4.00
5729 6323 2.651361 CCGTCGCACCTCTCAAGT 59.349 61.111 0.00 0.00 0.00 3.16
5776 6370 3.319274 CCATCCCCATGGTCGACA 58.681 61.111 18.91 3.91 44.46 4.35
6003 6609 2.565391 TGCCTCAAAGAAGGATACGACA 59.435 45.455 0.00 0.00 46.39 4.35
6290 6896 1.666553 GAACGTCGCACCACATCCA 60.667 57.895 0.00 0.00 0.00 3.41
6506 7114 0.392863 CTCCCATCACCATCGTTGCA 60.393 55.000 0.00 0.00 0.00 4.08
6516 7124 1.592669 CCGACATCGCTCCCATCAC 60.593 63.158 0.00 0.00 38.18 3.06
6683 7292 1.450134 CAGATACAGCTGGCGCCAA 60.450 57.895 32.09 16.35 36.60 4.52
6697 7306 7.040132 GGAGAACTCAAAAGGACAAAATCAGAT 60.040 37.037 4.23 0.00 0.00 2.90
6713 7322 1.535896 CGACTCTGACGGAGAACTCAA 59.464 52.381 18.40 0.00 44.45 3.02
6804 7413 2.437396 GGCCAAGCCCATTCCCATG 61.437 63.158 0.00 0.00 44.06 3.66
6897 7509 1.722011 TCGAAACGGAGGCAAAGATC 58.278 50.000 0.00 0.00 0.00 2.75
7056 7700 0.679002 CAGCACATGGGCAGCTAAGT 60.679 55.000 24.51 0.00 36.73 2.24
7105 7749 7.584987 ACTTAATCAATGTACACAAAGCTGTC 58.415 34.615 0.00 0.00 31.64 3.51
7479 8139 3.249799 TCTGCACGTTGTAAAGTTCCATG 59.750 43.478 0.00 0.00 0.00 3.66
7602 8262 4.928020 GTGTAAAGGCACTACTACAAGACC 59.072 45.833 0.00 0.00 38.49 3.85
7733 8393 2.762459 TAACCCATCGCTCCGCCT 60.762 61.111 0.00 0.00 0.00 5.52
7841 8501 1.079819 CTTCGGTGTCGATGCCAGT 60.080 57.895 8.59 0.00 45.51 4.00
7961 8621 2.029288 CGCGTTGCTGATGGACACT 61.029 57.895 0.00 0.00 0.00 3.55
8089 8749 3.269381 TCAAATAAGGGCAGGATGGAAGT 59.731 43.478 0.00 0.00 35.86 3.01
8094 8754 6.475596 AAGAAATCAAATAAGGGCAGGATG 57.524 37.500 0.00 0.00 40.87 3.51
8095 8755 6.441604 ACAAAGAAATCAAATAAGGGCAGGAT 59.558 34.615 0.00 0.00 0.00 3.24
8127 8787 3.118702 TCGAAAATGGCTCACGGGTAATA 60.119 43.478 0.00 0.00 0.00 0.98
8136 8797 0.248012 TACGCCTCGAAAATGGCTCA 59.752 50.000 11.21 0.00 46.42 4.26
8142 8803 1.405121 GGGACTGTACGCCTCGAAAAT 60.405 52.381 0.00 0.00 0.00 1.82
8154 8815 6.013725 TCTCTCTTGCAATTTTAGGGACTGTA 60.014 38.462 0.00 0.00 41.52 2.74
8155 8816 4.985538 TCTCTTGCAATTTTAGGGACTGT 58.014 39.130 0.00 0.00 41.52 3.55
8171 8836 5.592054 TCCAGCGTTGTATATTCTCTCTTG 58.408 41.667 0.00 0.00 0.00 3.02
8176 8841 5.348986 TGAGTTCCAGCGTTGTATATTCTC 58.651 41.667 0.00 0.00 0.00 2.87
8178 8843 5.348986 TCTGAGTTCCAGCGTTGTATATTC 58.651 41.667 0.00 0.00 42.62 1.75
8180 8845 5.339008 TTCTGAGTTCCAGCGTTGTATAT 57.661 39.130 0.00 0.00 42.62 0.86
8181 8846 4.794278 TTCTGAGTTCCAGCGTTGTATA 57.206 40.909 0.00 0.00 42.62 1.47
8182 8847 3.678056 TTCTGAGTTCCAGCGTTGTAT 57.322 42.857 0.00 0.00 42.62 2.29
8183 8848 3.462483 TTTCTGAGTTCCAGCGTTGTA 57.538 42.857 0.00 0.00 42.62 2.41
8184 8849 2.325583 TTTCTGAGTTCCAGCGTTGT 57.674 45.000 0.00 0.00 42.62 3.32
8185 8850 2.807967 TGATTTCTGAGTTCCAGCGTTG 59.192 45.455 0.00 0.00 42.62 4.10
8186 8851 2.808543 GTGATTTCTGAGTTCCAGCGTT 59.191 45.455 0.00 0.00 42.62 4.84
8187 8852 2.224281 TGTGATTTCTGAGTTCCAGCGT 60.224 45.455 0.00 0.00 42.62 5.07
8188 8853 2.416747 TGTGATTTCTGAGTTCCAGCG 58.583 47.619 0.00 0.00 42.62 5.18
8189 8854 6.072508 TGTTATTGTGATTTCTGAGTTCCAGC 60.073 38.462 0.00 0.00 42.62 4.85
8190 8855 7.439157 TGTTATTGTGATTTCTGAGTTCCAG 57.561 36.000 0.00 0.00 44.27 3.86
8191 8856 7.665145 TGATGTTATTGTGATTTCTGAGTTCCA 59.335 33.333 0.00 0.00 0.00 3.53
8192 8857 8.044060 TGATGTTATTGTGATTTCTGAGTTCC 57.956 34.615 0.00 0.00 0.00 3.62
8207 8872 9.577110 ACTTGCATTGTTATTCTGATGTTATTG 57.423 29.630 0.00 0.00 0.00 1.90
8215 8880 6.486320 TCACTGAACTTGCATTGTTATTCTGA 59.514 34.615 5.72 3.27 0.00 3.27
8217 8882 6.882610 TCACTGAACTTGCATTGTTATTCT 57.117 33.333 5.72 0.00 0.00 2.40
8218 8883 7.928908 TTTCACTGAACTTGCATTGTTATTC 57.071 32.000 5.72 0.00 0.00 1.75
8222 8887 5.051816 CCATTTCACTGAACTTGCATTGTT 58.948 37.500 5.46 5.46 0.00 2.83
8235 8903 2.862541 TCCACTGGAACCATTTCACTG 58.137 47.619 0.00 0.00 32.80 3.66
8236 8904 3.593442 TTCCACTGGAACCATTTCACT 57.407 42.857 6.39 0.00 36.71 3.41
8255 8923 4.031636 ACCCTAGAGAGTACGAACAGTT 57.968 45.455 0.00 0.00 0.00 3.16
8256 8924 3.717452 ACCCTAGAGAGTACGAACAGT 57.283 47.619 0.00 0.00 0.00 3.55
8263 8931 5.126384 GCCATGATCATACCCTAGAGAGTAC 59.874 48.000 8.15 0.00 0.00 2.73
8268 8936 4.529769 TCTTGCCATGATCATACCCTAGAG 59.470 45.833 8.15 1.21 0.00 2.43
8300 8975 4.582869 AGCAGAACAAGAGACATGCAATA 58.417 39.130 0.00 0.00 36.15 1.90
8304 8979 3.562505 CAAAGCAGAACAAGAGACATGC 58.437 45.455 0.00 0.00 0.00 4.06
8322 8997 1.202639 TGAACTTCTCTCGGCTGCAAA 60.203 47.619 0.50 0.00 0.00 3.68
8353 9028 2.364973 TCCCACCATAGCCTCGCA 60.365 61.111 0.00 0.00 0.00 5.10
8371 9046 1.880675 TGTATCCTCGCTCGATTCTCC 59.119 52.381 0.00 0.00 0.00 3.71
8377 9052 2.021457 TGTTCATGTATCCTCGCTCGA 58.979 47.619 0.00 0.00 0.00 4.04
8413 9091 5.679734 TGTTTTCATCTGTGCTTCTTCTC 57.320 39.130 0.00 0.00 0.00 2.87
8449 9127 1.672030 CTGGCTCATGTCAACGGCA 60.672 57.895 0.00 0.00 0.00 5.69
8472 9150 4.158394 ACTGCAAATGTACAACATGGATCC 59.842 41.667 4.20 4.20 37.97 3.36
8548 9229 7.038659 GCAGATCAGTATAGTTCAGTTTCTGT 58.961 38.462 0.00 0.00 32.61 3.41
8549 9230 7.264221 AGCAGATCAGTATAGTTCAGTTTCTG 58.736 38.462 0.00 0.00 0.00 3.02
8578 9259 4.563168 GGATGGCCACATAATCAGAGAGAG 60.563 50.000 8.16 0.00 37.47 3.20
8579 9260 3.326006 GGATGGCCACATAATCAGAGAGA 59.674 47.826 8.16 0.00 37.47 3.10
8580 9261 3.072038 TGGATGGCCACATAATCAGAGAG 59.928 47.826 8.16 0.00 39.92 3.20
8581 9262 3.047857 TGGATGGCCACATAATCAGAGA 58.952 45.455 8.16 0.00 39.92 3.10
8618 9303 3.857665 GCGCAATCTAAAGCTAAAAACCC 59.142 43.478 0.30 0.00 0.00 4.11
8626 9311 1.740025 GTTCCTGCGCAATCTAAAGCT 59.260 47.619 13.05 0.00 0.00 3.74
8693 9378 6.398234 TTCAGAACAGATGGTATCTCTAGC 57.602 41.667 0.00 0.00 37.58 3.42
8760 9445 4.464069 TCAGGTGAAAACCCACAAAAAG 57.536 40.909 0.00 0.00 38.74 2.27
8843 9564 1.922570 CGGTTGGATTGGTAGACGAG 58.077 55.000 0.00 0.00 0.00 4.18
8851 9572 1.392589 ATAGCAAGCGGTTGGATTGG 58.607 50.000 27.01 2.59 42.25 3.16
8918 14048 2.673200 GCTGTGGGGAGATGGAGCA 61.673 63.158 0.00 0.00 0.00 4.26
8978 14108 4.966787 GAGGCAAACCCGGCACCA 62.967 66.667 0.00 0.00 39.21 4.17
8989 14120 0.606401 CGCCAAGAGGAAAGAGGCAA 60.606 55.000 0.00 0.00 45.47 4.52
8990 14121 1.003355 CGCCAAGAGGAAAGAGGCA 60.003 57.895 0.00 0.00 45.47 4.75
9007 14138 2.963854 CACTAGCATCAGCCGCCG 60.964 66.667 0.00 0.00 43.56 6.46
9015 14146 2.817423 GCCGCTGCACACTAGCATC 61.817 63.158 0.00 0.00 44.68 3.91
9016 14147 2.821366 GCCGCTGCACACTAGCAT 60.821 61.111 0.00 0.00 44.68 3.79
9054 14185 2.125673 GCTTTCGTGCTCCGCCTA 60.126 61.111 0.00 0.00 36.19 3.93
9059 14190 2.747855 CCCCAGCTTTCGTGCTCC 60.748 66.667 0.00 0.00 41.98 4.70
9248 14644 3.839490 TCCTATCCGTTTCCTTACACCAA 59.161 43.478 0.00 0.00 0.00 3.67
9249 14645 3.443052 TCCTATCCGTTTCCTTACACCA 58.557 45.455 0.00 0.00 0.00 4.17
9250 14646 4.476628 TTCCTATCCGTTTCCTTACACC 57.523 45.455 0.00 0.00 0.00 4.16
9251 14647 5.522824 GTGATTCCTATCCGTTTCCTTACAC 59.477 44.000 0.00 0.00 0.00 2.90
9252 14648 5.424252 AGTGATTCCTATCCGTTTCCTTACA 59.576 40.000 0.00 0.00 0.00 2.41
9253 14649 5.915175 AGTGATTCCTATCCGTTTCCTTAC 58.085 41.667 0.00 0.00 0.00 2.34
9254 14650 5.659525 TGAGTGATTCCTATCCGTTTCCTTA 59.340 40.000 0.00 0.00 0.00 2.69
9255 14651 4.469945 TGAGTGATTCCTATCCGTTTCCTT 59.530 41.667 0.00 0.00 0.00 3.36
9256 14652 4.030913 TGAGTGATTCCTATCCGTTTCCT 58.969 43.478 0.00 0.00 0.00 3.36
9257 14653 4.402056 TGAGTGATTCCTATCCGTTTCC 57.598 45.455 0.00 0.00 0.00 3.13
9258 14654 5.420409 AGTTGAGTGATTCCTATCCGTTTC 58.580 41.667 0.00 0.00 0.00 2.78
9259 14655 5.422214 AGTTGAGTGATTCCTATCCGTTT 57.578 39.130 0.00 0.00 0.00 3.60
9334 14730 3.384467 AGCCAATTCCCCATTTGTAATCG 59.616 43.478 0.00 0.00 0.00 3.34
9359 14756 1.290134 CAAGAACCCTAGCTTCCCCT 58.710 55.000 0.00 0.00 0.00 4.79
9360 14757 0.394488 GCAAGAACCCTAGCTTCCCC 60.394 60.000 0.00 0.00 0.00 4.81
9361 14758 0.394488 GGCAAGAACCCTAGCTTCCC 60.394 60.000 0.00 0.00 0.00 3.97
9442 14842 1.227823 AAGCGCTACAGCCACAACA 60.228 52.632 12.05 0.00 37.91 3.33
9633 15127 2.386661 AATTCGTTCTGTCGGCATCT 57.613 45.000 0.00 0.00 0.00 2.90
9634 15128 3.471495 AAAATTCGTTCTGTCGGCATC 57.529 42.857 0.00 0.00 0.00 3.91
9635 15129 4.000988 AGTAAAATTCGTTCTGTCGGCAT 58.999 39.130 0.00 0.00 0.00 4.40
9644 15138 3.058224 ACAGCCTGCAGTAAAATTCGTTC 60.058 43.478 13.81 0.00 0.00 3.95
9667 18332 5.183713 TCAAGAATGGAGTACAAAGCATTGG 59.816 40.000 6.62 0.00 41.01 3.16
9687 18352 2.483106 CTGCATGTCTGAGGTGTTCAAG 59.517 50.000 0.00 0.00 34.81 3.02
9718 18383 2.026729 TGTCCGTGGATCCTTATTGCAA 60.027 45.455 14.23 0.00 0.00 4.08
9720 18385 2.213499 CTGTCCGTGGATCCTTATTGC 58.787 52.381 14.23 0.00 0.00 3.56
9721 18386 2.838736 CCTGTCCGTGGATCCTTATTG 58.161 52.381 14.23 0.00 0.00 1.90
9723 18388 0.759346 GCCTGTCCGTGGATCCTTAT 59.241 55.000 14.23 0.00 0.00 1.73
9724 18389 1.672854 CGCCTGTCCGTGGATCCTTA 61.673 60.000 14.23 0.00 0.00 2.69
9728 18393 4.451150 TGCGCCTGTCCGTGGATC 62.451 66.667 4.18 0.00 0.00 3.36
9729 18394 4.457496 CTGCGCCTGTCCGTGGAT 62.457 66.667 4.18 0.00 0.00 3.41
9735 18400 4.329545 TTGGGACTGCGCCTGTCC 62.330 66.667 30.00 30.00 46.94 4.02
9736 18401 2.743928 CTTGGGACTGCGCCTGTC 60.744 66.667 18.51 18.51 0.00 3.51
9738 18403 3.315142 TAGCTTGGGACTGCGCCTG 62.315 63.158 4.18 0.00 34.26 4.85
9740 18405 2.820037 GTAGCTTGGGACTGCGCC 60.820 66.667 4.18 0.00 34.26 6.53
9742 18407 2.125106 GGGTAGCTTGGGACTGCG 60.125 66.667 0.00 0.00 34.26 5.18
9748 31824 2.355115 GGGTGTGGGTAGCTTGGG 59.645 66.667 0.00 0.00 0.00 4.12
9756 31832 2.775219 AAAGACCGGGGTGTGGGT 60.775 61.111 6.32 0.00 39.83 4.51
9758 31834 1.152839 AACAAAGACCGGGGTGTGG 60.153 57.895 6.32 0.00 0.00 4.17
9761 31837 4.889807 TGAACAAAGACCGGGGTG 57.110 55.556 6.32 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.