Multiple sequence alignment - TraesCS5B01G205500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G205500 chr5B 100.000 8378 0 0 1 8378 373682757 373691134 0.000000e+00 15472.0
1 TraesCS5B01G205500 chr5B 92.045 88 7 0 4516 4603 588574205 588574292 3.180000e-24 124.0
2 TraesCS5B01G205500 chr5A 93.076 2354 110 27 710 3046 417896683 417899000 0.000000e+00 3395.0
3 TraesCS5B01G205500 chr5A 91.632 1422 61 20 3079 4457 417898998 417900404 0.000000e+00 1914.0
4 TraesCS5B01G205500 chr5A 93.644 1117 39 11 4597 5701 417900438 417901534 0.000000e+00 1640.0
5 TraesCS5B01G205500 chr5A 90.550 709 54 8 6768 7474 417902823 417903520 0.000000e+00 926.0
6 TraesCS5B01G205500 chr5A 91.412 687 34 14 1 666 417895991 417896673 0.000000e+00 918.0
7 TraesCS5B01G205500 chr5A 94.605 519 19 3 6253 6771 417902192 417902701 0.000000e+00 795.0
8 TraesCS5B01G205500 chr5A 83.124 954 49 37 7471 8378 417903553 417904440 0.000000e+00 767.0
9 TraesCS5B01G205500 chr5A 96.084 332 10 1 5926 6254 417901779 417902110 9.570000e-149 538.0
10 TraesCS5B01G205500 chr5A 95.361 194 9 0 5735 5928 417901536 417901729 8.170000e-80 309.0
11 TraesCS5B01G205500 chr5A 88.073 109 13 0 4597 4705 482551080 482550972 6.820000e-26 130.0
12 TraesCS5B01G205500 chr5D 94.240 2170 77 26 725 2867 322382786 322384934 0.000000e+00 3271.0
13 TraesCS5B01G205500 chr5D 96.305 1678 28 9 2865 4518 322385095 322386762 0.000000e+00 2724.0
14 TraesCS5B01G205500 chr5D 95.623 1348 43 5 4597 5928 322386758 322388105 0.000000e+00 2148.0
15 TraesCS5B01G205500 chr5D 92.809 737 33 11 1 725 322381919 322382647 0.000000e+00 1050.0
16 TraesCS5B01G205500 chr5D 86.159 932 48 30 7471 8378 322389834 322390708 0.000000e+00 931.0
17 TraesCS5B01G205500 chr5D 92.210 629 35 8 6847 7474 322389186 322389801 0.000000e+00 878.0
18 TraesCS5B01G205500 chr5D 95.585 521 15 5 6251 6771 322388525 322389037 0.000000e+00 828.0
19 TraesCS5B01G205500 chr5D 96.386 332 9 1 5926 6254 322388158 322388489 2.060000e-150 544.0
20 TraesCS5B01G205500 chr5D 82.584 178 27 4 4342 4518 496955375 496955549 4.050000e-33 154.0
21 TraesCS5B01G205500 chr5D 90.323 93 9 0 4511 4603 381152006 381151914 1.140000e-23 122.0
22 TraesCS5B01G205500 chr1A 86.932 176 22 1 4342 4517 158441141 158441315 6.630000e-46 196.0
23 TraesCS5B01G205500 chr4A 85.311 177 26 0 4342 4518 434542561 434542385 5.160000e-42 183.0
24 TraesCS5B01G205500 chr2A 85.629 167 22 2 4342 4507 383501869 383502034 3.110000e-39 174.0
25 TraesCS5B01G205500 chr2A 90.526 95 9 0 4509 4603 632952902 632952996 8.830000e-25 126.0
26 TraesCS5B01G205500 chr2A 88.000 100 10 2 4420 4518 125201934 125201836 5.310000e-22 117.0
27 TraesCS5B01G205500 chr2D 87.248 149 18 1 4346 4493 122705064 122704916 1.450000e-37 169.0
28 TraesCS5B01G205500 chr2B 85.621 153 21 1 4342 4493 175539804 175539652 8.700000e-35 159.0
29 TraesCS5B01G205500 chr2B 90.426 94 8 1 4515 4607 583417165 583417072 1.140000e-23 122.0
30 TraesCS5B01G205500 chr6B 91.304 92 8 0 4510 4601 179236250 179236341 8.830000e-25 126.0
31 TraesCS5B01G205500 chr6B 90.526 95 8 1 4512 4605 13827614 13827520 3.180000e-24 124.0
32 TraesCS5B01G205500 chr3D 92.135 89 7 0 4514 4602 302930473 302930385 8.830000e-25 126.0
33 TraesCS5B01G205500 chr3D 91.111 90 8 0 4515 4604 420463210 420463299 1.140000e-23 122.0
34 TraesCS5B01G205500 chr7B 81.366 161 23 4 4360 4518 709523975 709523820 3.180000e-24 124.0
35 TraesCS5B01G205500 chr6D 91.304 92 7 1 4513 4603 427344942 427344851 3.180000e-24 124.0
36 TraesCS5B01G205500 chr6D 88.889 63 7 0 4609 4671 3019390 3019452 2.510000e-10 78.7
37 TraesCS5B01G205500 chr4D 86.301 73 9 1 4597 4669 7791831 7791760 2.510000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G205500 chr5B 373682757 373691134 8377 False 15472.000000 15472 100.000000 1 8378 1 chr5B.!!$F1 8377
1 TraesCS5B01G205500 chr5A 417895991 417904440 8449 False 1244.666667 3395 92.165333 1 8378 9 chr5A.!!$F1 8377
2 TraesCS5B01G205500 chr5D 322381919 322390708 8789 False 1546.750000 3271 93.664625 1 8378 8 chr5D.!!$F2 8377

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
518 530 0.107165 GGCAACTTAGGGCGAAGGAT 60.107 55.000 0.00 0.0 0.00 3.24 F
1261 1440 0.179018 ACCTTCTGCCAGTCCACAAC 60.179 55.000 0.00 0.0 0.00 3.32 F
1507 1688 0.462581 GCATGCAGATTCGGGTCTCA 60.463 55.000 14.21 0.0 0.00 3.27 F
2200 2393 0.478072 CCATCGGATGGGAATTGGGA 59.522 55.000 26.20 0.0 46.86 4.37 F
3020 3380 0.688749 GCCCCCTCCTTGCAAATCAT 60.689 55.000 0.00 0.0 0.00 2.45 F
4408 4812 2.104967 CACAGGATTGGAATGGCATGT 58.895 47.619 0.00 0.0 0.00 3.21 F
5318 5758 0.882927 TGGTACCGTTTGTGAGCTGC 60.883 55.000 7.57 0.0 0.00 5.25 F
6824 7536 1.229428 TTGCTAGTGTGCTGCAAGTC 58.771 50.000 2.77 0.0 41.06 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2186 2378 0.032217 TTGCCTCCCAATTCCCATCC 60.032 55.000 0.00 0.00 0.00 3.51 R
2189 2381 0.251742 CAGTTGCCTCCCAATTCCCA 60.252 55.000 0.00 0.00 35.55 4.37 R
3142 3502 4.877378 ATTGTCATTGATTGGCAGTTGT 57.123 36.364 0.00 0.00 41.93 3.32 R
3678 4064 1.131126 CAGGCATTAGAGCACCAAACG 59.869 52.381 0.00 0.00 35.83 3.60 R
4978 5416 0.109153 TGCACACTCTGTTCCTGCAT 59.891 50.000 0.00 0.00 0.00 3.96 R
6062 6563 0.104304 GCACTACTACATGTCCCCCG 59.896 60.000 0.00 0.00 0.00 5.73 R
6927 7640 1.069513 ACGGTGGTTCTTTCATGACGA 59.930 47.619 0.00 0.00 0.00 4.20 R
7891 8671 0.318869 TGTGCACCAAGGTACGTACG 60.319 55.000 18.98 15.01 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 106 2.828520 CAGAAGGAAGGTGACAGAGCTA 59.171 50.000 0.00 0.00 0.00 3.32
137 138 6.611642 AGCAAGATATAGTAGTGAAACCCTCA 59.388 38.462 0.00 0.00 37.80 3.86
205 206 2.125512 CGAGCCCCAGGTTTCGAG 60.126 66.667 4.37 0.00 35.24 4.04
292 299 2.172293 AGCCCTTGAAGAAGATAGGCTG 59.828 50.000 9.18 0.00 40.75 4.85
294 301 3.743899 GCCCTTGAAGAAGATAGGCTGAG 60.744 52.174 0.00 0.00 33.48 3.35
295 302 3.465871 CCTTGAAGAAGATAGGCTGAGC 58.534 50.000 0.00 0.00 0.00 4.26
296 303 2.879002 TGAAGAAGATAGGCTGAGCG 57.121 50.000 0.00 0.00 0.00 5.03
298 305 0.755686 AAGAAGATAGGCTGAGCGGG 59.244 55.000 0.00 0.00 0.00 6.13
299 306 1.301322 GAAGATAGGCTGAGCGGGC 60.301 63.158 0.00 0.00 0.00 6.13
300 307 1.753368 GAAGATAGGCTGAGCGGGCT 61.753 60.000 10.38 10.38 44.34 5.19
301 308 1.341156 AAGATAGGCTGAGCGGGCTT 61.341 55.000 10.80 0.00 42.20 4.35
303 310 3.112205 ATAGGCTGAGCGGGCTTGG 62.112 63.158 10.80 0.00 42.20 3.61
309 317 3.077556 GAGCGGGCTTGGAGGAGA 61.078 66.667 0.00 0.00 0.00 3.71
314 322 1.745264 GGGCTTGGAGGAGAGATCG 59.255 63.158 0.00 0.00 0.00 3.69
344 352 0.727398 GTCCTCACGCCACTATTTGC 59.273 55.000 0.00 0.00 0.00 3.68
405 413 2.543031 GCGGTAGATTGTACGATGAGCA 60.543 50.000 0.00 0.00 0.00 4.26
485 497 6.705863 AATTTCTGGGAGTAATTCAGATGC 57.294 37.500 0.00 0.00 37.38 3.91
518 530 0.107165 GGCAACTTAGGGCGAAGGAT 60.107 55.000 0.00 0.00 0.00 3.24
550 562 6.409005 CCATTCTGTGATATCTCCAGGTCTTT 60.409 42.308 17.46 2.83 0.00 2.52
584 596 3.198068 GTGCAGTTCAGTTCAGTTCTGA 58.802 45.455 0.00 0.00 39.71 3.27
585 597 3.001736 GTGCAGTTCAGTTCAGTTCTGAC 59.998 47.826 1.72 0.00 40.90 3.51
586 598 2.219674 GCAGTTCAGTTCAGTTCTGACG 59.780 50.000 1.72 0.00 40.90 4.35
587 599 3.706698 CAGTTCAGTTCAGTTCTGACGA 58.293 45.455 1.72 0.00 40.90 4.20
588 600 4.112634 CAGTTCAGTTCAGTTCTGACGAA 58.887 43.478 1.72 3.82 40.90 3.85
589 601 4.208047 CAGTTCAGTTCAGTTCTGACGAAG 59.792 45.833 1.72 0.00 40.90 3.79
590 602 3.371102 TCAGTTCAGTTCTGACGAAGG 57.629 47.619 1.72 0.00 37.07 3.46
591 603 1.795286 CAGTTCAGTTCTGACGAAGGC 59.205 52.381 1.72 0.00 35.20 4.35
592 604 1.689273 AGTTCAGTTCTGACGAAGGCT 59.311 47.619 1.72 0.00 0.00 4.58
697 716 7.549488 ACACTTTCGGTCCATTTTTATCTCTAG 59.451 37.037 0.00 0.00 0.00 2.43
700 719 8.937634 TTTCGGTCCATTTTTATCTCTAGTAC 57.062 34.615 0.00 0.00 0.00 2.73
701 720 7.893124 TCGGTCCATTTTTATCTCTAGTACT 57.107 36.000 0.00 0.00 0.00 2.73
702 721 7.938715 TCGGTCCATTTTTATCTCTAGTACTC 58.061 38.462 0.00 0.00 0.00 2.59
703 722 7.778853 TCGGTCCATTTTTATCTCTAGTACTCT 59.221 37.037 0.00 0.00 0.00 3.24
704 723 7.863375 CGGTCCATTTTTATCTCTAGTACTCTG 59.137 40.741 0.00 0.00 0.00 3.35
763 921 6.313905 TCCTTCTCGAAATAGCAAACTGAATC 59.686 38.462 0.00 0.00 0.00 2.52
765 923 5.487433 TCTCGAAATAGCAAACTGAATCCA 58.513 37.500 0.00 0.00 0.00 3.41
768 926 5.351465 TCGAAATAGCAAACTGAATCCAGAC 59.649 40.000 0.00 0.00 43.02 3.51
772 930 2.555757 AGCAAACTGAATCCAGACAAGC 59.444 45.455 0.00 0.00 43.02 4.01
792 958 0.748729 AACCAAACGGCGAGGAAACA 60.749 50.000 16.62 0.00 0.00 2.83
821 987 5.506708 GGTTCTAGCCAAGAAAGGGAAATA 58.493 41.667 0.90 0.00 45.78 1.40
840 1006 1.308998 AAAAGCGATGGCCTTATCCG 58.691 50.000 3.32 0.00 41.24 4.18
882 1054 0.674581 TGCGATGAGTCCAAAGCTGG 60.675 55.000 0.00 0.00 45.08 4.85
1171 1350 2.627737 AAGCTCGACGGCGTTCTCT 61.628 57.895 16.19 6.60 38.98 3.10
1198 1377 1.555533 GCTCCTGGTGGTAAGTTAGCT 59.444 52.381 12.98 0.00 34.23 3.32
1237 1416 3.248024 CAACCCCATACCCTAGCTATGA 58.752 50.000 0.00 0.00 0.00 2.15
1261 1440 0.179018 ACCTTCTGCCAGTCCACAAC 60.179 55.000 0.00 0.00 0.00 3.32
1264 1443 0.819259 TTCTGCCAGTCCACAACAGC 60.819 55.000 0.00 0.00 0.00 4.40
1441 1622 3.698040 GGAGGACGACAGTAGGAAATACA 59.302 47.826 0.00 0.00 36.79 2.29
1442 1623 4.202030 GGAGGACGACAGTAGGAAATACAG 60.202 50.000 0.00 0.00 36.79 2.74
1453 1634 2.840651 AGGAAATACAGTAGCTGGCACT 59.159 45.455 0.00 0.00 35.51 4.40
1466 1647 4.712476 AGCTGGCACTTTATAGATGGAAG 58.288 43.478 0.00 0.00 0.00 3.46
1488 1669 3.518590 GGAAAGCTGCAATCCAATTGAG 58.481 45.455 16.07 0.00 42.83 3.02
1507 1688 0.462581 GCATGCAGATTCGGGTCTCA 60.463 55.000 14.21 0.00 0.00 3.27
1638 1820 2.281498 GCGCAAAAAGCTTTTTCTTCGT 59.719 40.909 29.70 9.70 42.61 3.85
1728 1910 0.615331 CTCCTAAGTGCCAAGCTCCA 59.385 55.000 0.00 0.00 0.00 3.86
1731 1913 1.271597 CCTAAGTGCCAAGCTCCAACT 60.272 52.381 0.00 0.00 0.00 3.16
1794 1976 3.997681 TCCGCACTGATTTTATCGAACAA 59.002 39.130 0.00 0.00 0.00 2.83
1851 2034 0.598065 GCGTTTTGCTGGTCTTCCAT 59.402 50.000 0.00 0.00 43.43 3.41
1935 2118 1.499056 CACAGCTGATTGCCACGAC 59.501 57.895 23.35 0.00 44.23 4.34
2110 2301 3.561310 AGTATTGTGCTGCATGGTTATCG 59.439 43.478 5.27 0.00 0.00 2.92
2146 2337 6.484977 TGTAAGTGTTCATTGCACATTACTCA 59.515 34.615 15.30 3.47 39.17 3.41
2150 2342 6.147821 AGTGTTCATTGCACATTACTCAGTAC 59.852 38.462 0.00 0.00 39.17 2.73
2159 2351 3.699538 ACATTACTCAGTACAGCCATCGA 59.300 43.478 0.00 0.00 0.00 3.59
2189 2381 1.549203 AAAAAGTGCAGCCATCGGAT 58.451 45.000 0.00 0.00 0.00 4.18
2200 2393 0.478072 CCATCGGATGGGAATTGGGA 59.522 55.000 26.20 0.00 46.86 4.37
2203 2396 1.529244 CGGATGGGAATTGGGAGGC 60.529 63.158 0.00 0.00 0.00 4.70
2245 2438 6.238484 CGGGTTCCAGCTATTTTTCTGATAAG 60.238 42.308 0.00 0.00 32.26 1.73
2264 2457 3.443099 AGAAAAGCTGAACAACTTGCC 57.557 42.857 0.00 0.00 0.00 4.52
2277 2470 4.385825 ACAACTTGCCTTCGTCTTCATTA 58.614 39.130 0.00 0.00 0.00 1.90
2314 2510 5.680619 TGTACTTTGTCTGGTGATGAACTT 58.319 37.500 0.00 0.00 0.00 2.66
2485 2681 3.163594 CGTTAGCTTTGCTCCAAATTCG 58.836 45.455 0.00 0.00 40.44 3.34
2742 2939 1.306911 TCATCTGCAGGCCAGGGTA 60.307 57.895 15.13 0.00 42.05 3.69
3020 3380 0.688749 GCCCCCTCCTTGCAAATCAT 60.689 55.000 0.00 0.00 0.00 2.45
3142 3502 6.295518 CCAGCATGATATCCAGTTAAGCTCTA 60.296 42.308 0.00 0.00 39.69 2.43
3525 3891 3.274288 CTGCTGGGTTTCTGAATACCTC 58.726 50.000 16.09 10.11 34.75 3.85
3664 4050 3.751175 TGTTGTGCTTCCTATCTTTTCCG 59.249 43.478 0.00 0.00 0.00 4.30
3678 4064 7.600752 CCTATCTTTTCCGATTCTCATTAGGAC 59.399 40.741 0.00 0.00 0.00 3.85
3724 4110 3.689347 TGGGGAAACAATCACTGATGAG 58.311 45.455 0.00 0.00 38.57 2.90
3863 4265 5.095490 CAGTAGAAATCATTTCCGCAAACC 58.905 41.667 6.50 0.00 40.54 3.27
3865 4267 2.817258 AGAAATCATTTCCGCAAACCGA 59.183 40.909 6.50 0.00 40.54 4.69
3909 4311 4.764679 TGTCCAACAAAGTGATATGTGC 57.235 40.909 0.00 0.00 0.00 4.57
4226 4629 4.891992 AGCTTAGGTACTTTTCTGCTGA 57.108 40.909 0.00 0.00 41.75 4.26
4306 4709 9.166173 CATCCATAGTCAAACATGTTAAGAAGA 57.834 33.333 12.39 5.24 0.00 2.87
4355 4758 3.274288 CTGTAGTGGGCCTCTTTGATTC 58.726 50.000 14.14 0.00 0.00 2.52
4408 4812 2.104967 CACAGGATTGGAATGGCATGT 58.895 47.619 0.00 0.00 0.00 3.21
4453 4857 5.283294 TGAGTTTGTTTGATTGCATCACAG 58.717 37.500 0.00 0.00 39.39 3.66
4454 4858 4.624015 AGTTTGTTTGATTGCATCACAGG 58.376 39.130 0.00 0.00 39.39 4.00
4455 4859 4.341806 AGTTTGTTTGATTGCATCACAGGA 59.658 37.500 0.00 0.00 39.39 3.86
4456 4860 4.933505 TTGTTTGATTGCATCACAGGAA 57.066 36.364 0.00 0.00 39.39 3.36
4457 4861 4.933505 TGTTTGATTGCATCACAGGAAA 57.066 36.364 0.00 0.00 39.39 3.13
4458 4862 4.619973 TGTTTGATTGCATCACAGGAAAC 58.380 39.130 0.00 0.00 39.39 2.78
4459 4863 4.099113 TGTTTGATTGCATCACAGGAAACA 59.901 37.500 0.00 0.00 39.39 2.83
4460 4864 3.921119 TGATTGCATCACAGGAAACAC 57.079 42.857 0.00 0.00 33.59 3.32
4461 4865 3.220940 TGATTGCATCACAGGAAACACA 58.779 40.909 0.00 0.00 33.59 3.72
4462 4866 3.635836 TGATTGCATCACAGGAAACACAA 59.364 39.130 0.00 0.00 33.59 3.33
4463 4867 4.099113 TGATTGCATCACAGGAAACACAAA 59.901 37.500 0.00 0.00 33.59 2.83
4464 4868 3.713858 TGCATCACAGGAAACACAAAG 57.286 42.857 0.00 0.00 0.00 2.77
4465 4869 2.361757 TGCATCACAGGAAACACAAAGG 59.638 45.455 0.00 0.00 0.00 3.11
4466 4870 2.622942 GCATCACAGGAAACACAAAGGA 59.377 45.455 0.00 0.00 0.00 3.36
4467 4871 3.256631 GCATCACAGGAAACACAAAGGAT 59.743 43.478 0.00 0.00 0.00 3.24
4468 4872 4.262164 GCATCACAGGAAACACAAAGGATT 60.262 41.667 0.00 0.00 0.00 3.01
4469 4873 5.739935 GCATCACAGGAAACACAAAGGATTT 60.740 40.000 0.00 0.00 40.26 2.17
4470 4874 5.930837 TCACAGGAAACACAAAGGATTTT 57.069 34.783 0.00 0.00 35.03 1.82
4471 4875 6.293004 TCACAGGAAACACAAAGGATTTTT 57.707 33.333 0.00 0.00 35.03 1.94
4513 4940 5.692115 TGCTAGATTTCCTGTGGAATGTA 57.308 39.130 0.00 0.00 41.71 2.29
4514 4941 5.674525 TGCTAGATTTCCTGTGGAATGTAG 58.325 41.667 0.00 4.86 41.71 2.74
4515 4942 5.189736 TGCTAGATTTCCTGTGGAATGTAGT 59.810 40.000 0.00 0.00 41.71 2.73
4516 4943 6.382859 TGCTAGATTTCCTGTGGAATGTAGTA 59.617 38.462 0.00 1.47 41.71 1.82
4517 4944 6.702282 GCTAGATTTCCTGTGGAATGTAGTAC 59.298 42.308 0.00 0.00 41.71 2.73
4518 4945 6.875972 AGATTTCCTGTGGAATGTAGTACT 57.124 37.500 0.00 0.00 41.71 2.73
4519 4946 7.259088 AGATTTCCTGTGGAATGTAGTACTT 57.741 36.000 0.00 0.00 41.71 2.24
4520 4947 7.331791 AGATTTCCTGTGGAATGTAGTACTTC 58.668 38.462 0.00 0.00 41.71 3.01
4521 4948 5.416271 TTCCTGTGGAATGTAGTACTTCC 57.584 43.478 17.74 17.74 36.71 3.46
4522 4949 4.684724 TCCTGTGGAATGTAGTACTTCCT 58.315 43.478 21.82 0.00 41.29 3.36
4523 4950 4.710375 TCCTGTGGAATGTAGTACTTCCTC 59.290 45.833 21.82 19.65 41.29 3.71
4524 4951 4.141914 CCTGTGGAATGTAGTACTTCCTCC 60.142 50.000 21.82 10.53 41.29 4.30
4525 4952 4.422057 TGTGGAATGTAGTACTTCCTCCA 58.578 43.478 21.82 13.31 41.29 3.86
4526 4953 5.030147 TGTGGAATGTAGTACTTCCTCCAT 58.970 41.667 21.82 5.30 41.29 3.41
4527 4954 6.199376 TGTGGAATGTAGTACTTCCTCCATA 58.801 40.000 21.82 14.29 41.29 2.74
4528 4955 6.670464 TGTGGAATGTAGTACTTCCTCCATAA 59.330 38.462 21.82 10.49 41.29 1.90
4529 4956 7.147724 TGTGGAATGTAGTACTTCCTCCATAAG 60.148 40.741 21.82 0.00 41.29 1.73
4530 4957 7.069578 GTGGAATGTAGTACTTCCTCCATAAGA 59.930 40.741 21.82 6.51 41.29 2.10
4531 4958 7.622081 TGGAATGTAGTACTTCCTCCATAAGAA 59.378 37.037 21.82 6.04 41.29 2.52
4532 4959 8.483758 GGAATGTAGTACTTCCTCCATAAGAAA 58.516 37.037 17.49 0.00 38.31 2.52
4533 4960 9.886132 GAATGTAGTACTTCCTCCATAAGAAAA 57.114 33.333 0.00 0.00 0.00 2.29
4594 5021 8.649973 AACGCTCTTATATTTCTTTACAGAGG 57.350 34.615 0.00 0.00 0.00 3.69
4595 5022 7.210873 ACGCTCTTATATTTCTTTACAGAGGG 58.789 38.462 8.36 8.36 42.53 4.30
4711 5149 7.442062 TCCTCCAAAAATCTTTTGAATCAAAGC 59.558 33.333 8.51 0.00 34.72 3.51
4978 5416 9.812347 ATCCTTGGTATAGCAATAAATTCATCA 57.188 29.630 17.19 0.00 0.00 3.07
5104 5542 9.790389 CCTGTACTGATAATTCCTATCGTAATC 57.210 37.037 0.60 0.00 39.57 1.75
5123 5561 6.915300 CGTAATCTCTCAAGTTCTCCTATGTG 59.085 42.308 0.00 0.00 0.00 3.21
5202 5642 7.022055 TGATTGGTAGCATTATTTTACCACG 57.978 36.000 0.00 0.00 44.72 4.94
5293 5733 5.130975 TCCTATGTATTCTGTCCTGCACATT 59.869 40.000 0.00 0.00 33.23 2.71
5318 5758 0.882927 TGGTACCGTTTGTGAGCTGC 60.883 55.000 7.57 0.00 0.00 5.25
5325 5765 1.532437 CGTTTGTGAGCTGCTCATTCA 59.468 47.619 32.45 23.87 42.73 2.57
5326 5766 2.412455 CGTTTGTGAGCTGCTCATTCAG 60.412 50.000 32.45 19.43 42.73 3.02
5376 5816 3.624861 GTGTCTGTGAAGGCCAATATGAG 59.375 47.826 5.01 0.00 0.00 2.90
5425 5868 7.384115 TGTTCAACTGCTAGTGTAAGTACATTC 59.616 37.037 0.00 0.00 38.63 2.67
5450 5893 4.513318 GTCTGTCTATATTCTTTGCAGGGC 59.487 45.833 0.00 0.00 0.00 5.19
5463 5906 1.565759 TGCAGGGCACTCCATCTTATT 59.434 47.619 0.00 0.00 38.24 1.40
5485 5928 1.897802 ACGGTTTATCCCAGTTCGAGT 59.102 47.619 0.00 0.00 0.00 4.18
5564 6007 7.031975 GGAGATTCTTTGAAAGGCTTGTTATG 58.968 38.462 0.00 0.00 0.00 1.90
5669 6112 5.003804 GGTTCAAGGTTCTAAATGCTCTCA 58.996 41.667 0.00 0.00 0.00 3.27
5788 6234 2.703416 CTGCTGTTCAGGCTCATTACA 58.297 47.619 1.97 0.00 39.15 2.41
6004 6505 4.159135 CCTCTTAAAACAGAATGGCAGCAT 59.841 41.667 0.00 0.00 43.62 3.79
6062 6563 4.791069 TAGGGGGACTGCCGGACC 62.791 72.222 5.05 1.72 33.83 4.46
6349 6936 4.694037 TCAACTGTCTGCTCTTTCATCATG 59.306 41.667 0.00 0.00 0.00 3.07
6526 7113 3.473113 ACATTTTGCAGTTATCCCCCT 57.527 42.857 0.00 0.00 0.00 4.79
6733 7320 4.578105 AGAGGCTAAAGAATGTATGCTTGC 59.422 41.667 0.00 0.00 0.00 4.01
6739 7326 3.659183 AGAATGTATGCTTGCTTCCCT 57.341 42.857 0.00 0.00 0.00 4.20
6740 7327 3.285484 AGAATGTATGCTTGCTTCCCTG 58.715 45.455 0.00 0.00 0.00 4.45
6741 7328 2.814805 ATGTATGCTTGCTTCCCTGT 57.185 45.000 0.00 0.00 0.00 4.00
6742 7329 2.584835 TGTATGCTTGCTTCCCTGTT 57.415 45.000 0.00 0.00 0.00 3.16
6743 7330 2.875296 TGTATGCTTGCTTCCCTGTTT 58.125 42.857 0.00 0.00 0.00 2.83
6744 7331 3.230134 TGTATGCTTGCTTCCCTGTTTT 58.770 40.909 0.00 0.00 0.00 2.43
6745 7332 3.640967 TGTATGCTTGCTTCCCTGTTTTT 59.359 39.130 0.00 0.00 0.00 1.94
6746 7333 2.888834 TGCTTGCTTCCCTGTTTTTC 57.111 45.000 0.00 0.00 0.00 2.29
6750 7337 4.404073 TGCTTGCTTCCCTGTTTTTCTTTA 59.596 37.500 0.00 0.00 0.00 1.85
6752 7339 5.463392 GCTTGCTTCCCTGTTTTTCTTTAAG 59.537 40.000 0.00 0.00 0.00 1.85
6795 7507 3.877508 GCTTATGAATGTGTACCAGGGTC 59.122 47.826 0.00 0.00 0.00 4.46
6801 7513 2.391926 TGTGTACCAGGGTCTTCTCA 57.608 50.000 0.00 0.00 0.00 3.27
6803 7515 2.158370 TGTGTACCAGGGTCTTCTCAGA 60.158 50.000 0.00 0.00 0.00 3.27
6810 7522 3.198635 CCAGGGTCTTCTCAGATTTGCTA 59.801 47.826 0.00 0.00 0.00 3.49
6824 7536 1.229428 TTGCTAGTGTGCTGCAAGTC 58.771 50.000 2.77 0.00 41.06 3.01
6843 7555 6.381801 CAAGTCTGCAACAACTAAATTAGGG 58.618 40.000 4.92 0.00 0.00 3.53
6844 7556 5.631119 AGTCTGCAACAACTAAATTAGGGT 58.369 37.500 4.92 0.00 0.00 4.34
6845 7557 5.473504 AGTCTGCAACAACTAAATTAGGGTG 59.526 40.000 4.92 4.93 0.00 4.61
6852 7564 8.085909 GCAACAACTAAATTAGGGTGTTATTGT 58.914 33.333 17.90 9.38 36.57 2.71
6884 7596 9.696917 AGAATGTTCAGCTAATTTAAAAGTTGG 57.303 29.630 0.00 0.00 0.00 3.77
6887 7599 9.860898 ATGTTCAGCTAATTTAAAAGTTGGATC 57.139 29.630 0.00 0.00 0.00 3.36
6900 7613 6.389830 AAAGTTGGATCGCATTGCAATATA 57.610 33.333 12.53 0.60 29.37 0.86
6908 7621 4.397420 TCGCATTGCAATATAACTGGGAT 58.603 39.130 12.53 0.00 0.00 3.85
6923 7636 6.969993 AACTGGGATAGACTAGATCTTGTC 57.030 41.667 24.40 24.40 39.04 3.18
6924 7637 6.019656 ACTGGGATAGACTAGATCTTGTCA 57.980 41.667 30.35 19.94 39.04 3.58
6925 7638 6.436027 ACTGGGATAGACTAGATCTTGTCAA 58.564 40.000 30.35 13.21 39.04 3.18
6926 7639 6.549364 ACTGGGATAGACTAGATCTTGTCAAG 59.451 42.308 30.35 20.66 39.04 3.02
6927 7640 6.436027 TGGGATAGACTAGATCTTGTCAAGT 58.564 40.000 30.35 19.16 39.04 3.16
6928 7641 6.547880 TGGGATAGACTAGATCTTGTCAAGTC 59.452 42.308 30.35 23.91 39.04 3.01
6929 7642 6.293735 GGGATAGACTAGATCTTGTCAAGTCG 60.294 46.154 30.35 1.27 39.04 4.18
6945 7658 2.767505 AGTCGTCATGAAAGAACCACC 58.232 47.619 0.00 0.00 0.00 4.61
6953 7666 4.276431 TCATGAAAGAACCACCGTAAAACC 59.724 41.667 0.00 0.00 0.00 3.27
6968 7681 6.093082 ACCGTAAAACCTAAGATGCAATACAC 59.907 38.462 0.00 0.00 0.00 2.90
6995 7708 9.696917 AATTCTGATTAATTTTGACCAGAACAC 57.303 29.630 14.00 0.00 41.52 3.32
7000 7713 8.912988 TGATTAATTTTGACCAGAACACTTTCT 58.087 29.630 0.00 0.00 43.35 2.52
7191 7905 5.940470 ACAGGTTATTACTTTCAAGCTCTGG 59.060 40.000 0.00 0.00 0.00 3.86
7224 7938 5.050769 ACTGAGATATGCGCGTTCTTATTTG 60.051 40.000 7.78 0.00 0.00 2.32
7315 8029 2.540101 CCGATTTGTCGAGTGCCTATTC 59.460 50.000 0.00 0.00 34.64 1.75
7316 8030 2.216488 CGATTTGTCGAGTGCCTATTCG 59.784 50.000 0.00 0.00 37.38 3.34
7359 8073 1.590238 GCAGTGAATTCAGACGATCCG 59.410 52.381 8.80 0.00 0.00 4.18
7390 8104 5.403246 ACATCGTCTAGAAGTTGACATGTC 58.597 41.667 19.27 19.27 33.83 3.06
7469 8183 6.115446 CCAGCATAGGAAGACAAACTATTCA 58.885 40.000 0.00 0.00 0.00 2.57
7509 8259 2.289195 TGAAAATCAAGAGCCGTACCGT 60.289 45.455 0.00 0.00 0.00 4.83
7510 8260 3.056678 TGAAAATCAAGAGCCGTACCGTA 60.057 43.478 0.00 0.00 0.00 4.02
7511 8261 2.573941 AATCAAGAGCCGTACCGTAC 57.426 50.000 0.00 0.00 0.00 3.67
7512 8262 0.743097 ATCAAGAGCCGTACCGTACC 59.257 55.000 3.04 0.00 0.00 3.34
7513 8263 1.226491 CAAGAGCCGTACCGTACCG 60.226 63.158 3.04 0.00 0.00 4.02
7533 8283 1.021390 CGTGCGCAATCCCTCTTCTT 61.021 55.000 14.00 0.00 0.00 2.52
7537 8287 1.012841 CGCAATCCCTCTTCTTGAGC 58.987 55.000 0.00 0.00 41.35 4.26
7559 8309 5.348997 AGCGACAGTATTACAGAAAGAAAGC 59.651 40.000 0.00 0.00 0.00 3.51
7591 8341 6.351033 GGTTCATTCGCTCTCACCCATATATA 60.351 42.308 0.00 0.00 0.00 0.86
7659 8421 1.269257 GCTGCACCTGGACAGTTTTTC 60.269 52.381 18.15 3.15 36.26 2.29
7673 8436 4.211920 CAGTTTTTCAGGAAGGGTGGTTA 58.788 43.478 0.00 0.00 0.00 2.85
7704 8477 1.302832 CAGCTGACAGGGGTTCACC 60.303 63.158 8.42 0.00 39.11 4.02
7728 8501 5.465935 TCAGGTTGTTTGAACTGTTGTTTC 58.534 37.500 0.00 0.00 36.39 2.78
7729 8502 5.242838 TCAGGTTGTTTGAACTGTTGTTTCT 59.757 36.000 0.00 0.00 36.39 2.52
7730 8503 5.345741 CAGGTTGTTTGAACTGTTGTTTCTG 59.654 40.000 0.00 0.00 36.39 3.02
7740 8513 4.536765 ACTGTTGTTTCTGGAGTCCAAAT 58.463 39.130 14.17 0.00 30.80 2.32
7746 8519 9.137459 TGTTGTTTCTGGAGTCCAAATTATAAA 57.863 29.630 14.17 4.64 30.80 1.40
7751 8524 8.662781 TTCTGGAGTCCAAATTATAAATCTCG 57.337 34.615 14.17 0.00 30.80 4.04
7753 8526 5.763204 TGGAGTCCAAATTATAAATCTCGCC 59.237 40.000 10.20 0.00 0.00 5.54
7755 8528 6.147985 GGAGTCCAAATTATAAATCTCGCCTC 59.852 42.308 3.60 0.00 0.00 4.70
7765 8538 1.786937 ATCTCGCCTCCATCAGTTCT 58.213 50.000 0.00 0.00 0.00 3.01
7816 8591 1.019805 GCCGCTCTTTCCAGTGTACC 61.020 60.000 0.00 0.00 0.00 3.34
7817 8592 0.320374 CCGCTCTTTCCAGTGTACCA 59.680 55.000 0.00 0.00 0.00 3.25
7818 8593 1.429463 CGCTCTTTCCAGTGTACCAC 58.571 55.000 0.00 0.00 34.10 4.16
7819 8594 1.000955 CGCTCTTTCCAGTGTACCACT 59.999 52.381 0.00 0.00 46.51 4.00
7820 8595 2.689646 GCTCTTTCCAGTGTACCACTC 58.310 52.381 0.00 0.00 43.43 3.51
7821 8596 2.613223 GCTCTTTCCAGTGTACCACTCC 60.613 54.545 0.00 0.00 43.43 3.85
7822 8597 1.975680 TCTTTCCAGTGTACCACTCCC 59.024 52.381 0.00 0.00 43.43 4.30
7823 8598 1.978580 CTTTCCAGTGTACCACTCCCT 59.021 52.381 0.00 0.00 43.43 4.20
7824 8599 1.348064 TTCCAGTGTACCACTCCCTG 58.652 55.000 0.00 0.00 43.43 4.45
7825 8600 0.190069 TCCAGTGTACCACTCCCTGT 59.810 55.000 0.00 0.00 43.43 4.00
7826 8601 1.056660 CCAGTGTACCACTCCCTGTT 58.943 55.000 0.00 0.00 43.43 3.16
7827 8602 2.158279 TCCAGTGTACCACTCCCTGTTA 60.158 50.000 0.00 0.00 43.43 2.41
7828 8603 2.838202 CCAGTGTACCACTCCCTGTTAT 59.162 50.000 0.00 0.00 43.43 1.89
7829 8604 3.118738 CCAGTGTACCACTCCCTGTTATC 60.119 52.174 0.00 0.00 43.43 1.75
7830 8605 3.513912 CAGTGTACCACTCCCTGTTATCA 59.486 47.826 0.00 0.00 43.43 2.15
7831 8606 3.769844 AGTGTACCACTCCCTGTTATCAG 59.230 47.826 0.00 0.00 41.21 2.90
7832 8607 2.500098 TGTACCACTCCCTGTTATCAGC 59.500 50.000 0.00 0.00 40.09 4.26
7833 8608 1.958288 ACCACTCCCTGTTATCAGCT 58.042 50.000 0.00 0.00 40.09 4.24
7834 8609 1.556911 ACCACTCCCTGTTATCAGCTG 59.443 52.381 7.63 7.63 40.09 4.24
7835 8610 1.556911 CCACTCCCTGTTATCAGCTGT 59.443 52.381 14.67 3.75 40.09 4.40
7836 8611 2.026822 CCACTCCCTGTTATCAGCTGTT 60.027 50.000 14.67 8.22 40.09 3.16
7837 8612 3.560025 CCACTCCCTGTTATCAGCTGTTT 60.560 47.826 14.67 5.37 40.09 2.83
7838 8613 3.686726 CACTCCCTGTTATCAGCTGTTTC 59.313 47.826 14.67 4.00 40.09 2.78
7839 8614 3.584848 ACTCCCTGTTATCAGCTGTTTCT 59.415 43.478 14.67 0.00 40.09 2.52
7840 8615 3.937706 CTCCCTGTTATCAGCTGTTTCTG 59.062 47.826 14.67 7.13 40.09 3.02
7841 8616 3.012518 CCCTGTTATCAGCTGTTTCTGG 58.987 50.000 14.67 14.45 40.09 3.86
7842 8617 3.307691 CCCTGTTATCAGCTGTTTCTGGA 60.308 47.826 14.67 0.00 40.09 3.86
7862 8637 6.606395 TCTGGAGTAGTTAGTTACCCATCTTC 59.394 42.308 0.00 0.00 0.00 2.87
7893 8673 1.369625 GCATTTGCTGCCTAGTACGT 58.630 50.000 0.00 0.00 45.66 3.57
7894 8674 2.546778 GCATTTGCTGCCTAGTACGTA 58.453 47.619 0.00 0.00 45.66 3.57
7895 8675 2.284417 GCATTTGCTGCCTAGTACGTAC 59.716 50.000 18.10 18.10 45.66 3.67
7920 8700 4.401022 ACCTTGGTGCACATATATGGATG 58.599 43.478 20.43 8.13 0.00 3.51
7923 8703 4.932911 TGGTGCACATATATGGATGGAT 57.067 40.909 20.43 0.00 0.00 3.41
7924 8704 6.385766 TTGGTGCACATATATGGATGGATA 57.614 37.500 20.43 0.51 0.00 2.59
7925 8705 5.993055 TGGTGCACATATATGGATGGATAG 58.007 41.667 20.43 0.00 0.00 2.08
7926 8706 5.725822 TGGTGCACATATATGGATGGATAGA 59.274 40.000 20.43 0.00 0.00 1.98
7967 8747 2.666317 CTGTTTCTCACCCCAGGTTTT 58.334 47.619 0.00 0.00 31.02 2.43
7997 8778 0.178961 GGAAAGCTTTGGTCCCTGGT 60.179 55.000 18.30 0.00 0.00 4.00
7998 8779 1.248486 GAAAGCTTTGGTCCCTGGTC 58.752 55.000 18.30 0.00 0.00 4.02
7999 8780 0.178961 AAAGCTTTGGTCCCTGGTCC 60.179 55.000 11.80 0.00 0.00 4.46
8000 8781 1.360393 AAGCTTTGGTCCCTGGTCCA 61.360 55.000 0.00 0.00 0.00 4.02
8022 8803 2.092753 TCCTGTCAAATGATGAGAGCCC 60.093 50.000 0.00 0.00 45.68 5.19
8023 8804 2.356432 CCTGTCAAATGATGAGAGCCCA 60.356 50.000 0.00 0.00 45.68 5.36
8024 8805 2.681848 CTGTCAAATGATGAGAGCCCAC 59.318 50.000 0.00 0.00 41.89 4.61
8066 8847 3.211963 ATCATGCGCGGGCCTTTC 61.212 61.111 22.70 0.00 38.85 2.62
8067 8848 3.704231 ATCATGCGCGGGCCTTTCT 62.704 57.895 22.70 0.00 38.85 2.52
8068 8849 3.880846 CATGCGCGGGCCTTTCTC 61.881 66.667 22.70 0.00 38.85 2.87
8072 8853 4.840005 CGCGGGCCTTTCTCCCTC 62.840 72.222 0.84 0.00 41.69 4.30
8073 8854 4.491409 GCGGGCCTTTCTCCCTCC 62.491 72.222 0.84 0.00 41.69 4.30
8074 8855 2.689034 CGGGCCTTTCTCCCTCCT 60.689 66.667 0.84 0.00 41.69 3.69
8075 8856 2.736826 CGGGCCTTTCTCCCTCCTC 61.737 68.421 0.84 0.00 41.69 3.71
8158 8945 2.024871 CGCGGTCGACCTCTCATC 59.975 66.667 30.92 12.21 38.10 2.92
8159 8946 2.413765 GCGGTCGACCTCTCATCC 59.586 66.667 30.92 3.55 0.00 3.51
8160 8947 3.121019 CGGTCGACCTCTCATCCC 58.879 66.667 30.92 2.76 0.00 3.85
8161 8948 1.454111 CGGTCGACCTCTCATCCCT 60.454 63.158 30.92 0.00 0.00 4.20
8212 8999 1.181098 GCATGTCTTGTGCTTGGGGT 61.181 55.000 0.00 0.00 39.45 4.95
8362 9171 1.177256 CCTGCTTTTGTGCTGCCTCT 61.177 55.000 0.00 0.00 0.00 3.69
8363 9172 0.672342 CTGCTTTTGTGCTGCCTCTT 59.328 50.000 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 106 8.526667 TTCACTACTATATCTTGCTGAGAAGT 57.473 34.615 0.00 0.00 38.06 3.01
137 138 0.034059 CCACAGTTCCTTGCGAGTCT 59.966 55.000 0.00 0.00 0.00 3.24
238 239 1.444836 TATTTTCTTGGTCGGCGGTG 58.555 50.000 7.21 0.00 0.00 4.94
239 240 2.188062 TTATTTTCTTGGTCGGCGGT 57.812 45.000 7.21 0.00 0.00 5.68
292 299 3.077556 TCTCCTCCAAGCCCGCTC 61.078 66.667 0.00 0.00 0.00 5.03
294 301 2.376228 GATCTCTCCTCCAAGCCCGC 62.376 65.000 0.00 0.00 0.00 6.13
295 302 1.745264 GATCTCTCCTCCAAGCCCG 59.255 63.158 0.00 0.00 0.00 6.13
296 303 1.045911 ACGATCTCTCCTCCAAGCCC 61.046 60.000 0.00 0.00 0.00 5.19
298 305 1.338655 GGTACGATCTCTCCTCCAAGC 59.661 57.143 0.00 0.00 0.00 4.01
299 306 2.938838 AGGTACGATCTCTCCTCCAAG 58.061 52.381 0.00 0.00 0.00 3.61
300 307 3.715315 TCTAGGTACGATCTCTCCTCCAA 59.285 47.826 0.00 0.00 0.00 3.53
301 308 3.315596 TCTAGGTACGATCTCTCCTCCA 58.684 50.000 0.00 0.00 0.00 3.86
303 310 4.258543 CCATCTAGGTACGATCTCTCCTC 58.741 52.174 0.00 0.00 0.00 3.71
304 311 4.295141 CCATCTAGGTACGATCTCTCCT 57.705 50.000 0.00 0.00 0.00 3.69
344 352 3.935203 ACTGTACAGCAATTCAATCCTCG 59.065 43.478 22.90 0.00 0.00 4.63
485 497 2.905996 TTGCCCACCCCTACAGCTG 61.906 63.158 13.48 13.48 0.00 4.24
518 530 1.419381 TATCACAGAATGGGGCGCTA 58.581 50.000 7.64 0.00 42.44 4.26
550 562 0.977627 ACTGCACCATCCAGGATCGA 60.978 55.000 0.00 0.00 41.22 3.59
584 596 4.556699 GCATACAAGTGAAAAAGCCTTCGT 60.557 41.667 0.00 0.00 0.00 3.85
585 597 3.914364 GCATACAAGTGAAAAAGCCTTCG 59.086 43.478 0.00 0.00 0.00 3.79
586 598 4.919754 CAGCATACAAGTGAAAAAGCCTTC 59.080 41.667 0.00 0.00 0.00 3.46
587 599 4.584325 TCAGCATACAAGTGAAAAAGCCTT 59.416 37.500 0.00 0.00 0.00 4.35
588 600 4.144297 TCAGCATACAAGTGAAAAAGCCT 58.856 39.130 0.00 0.00 0.00 4.58
589 601 4.503741 TCAGCATACAAGTGAAAAAGCC 57.496 40.909 0.00 0.00 0.00 4.35
590 602 8.693542 AATTATCAGCATACAAGTGAAAAAGC 57.306 30.769 0.00 0.00 0.00 3.51
647 666 9.731819 TGTCAAACAAAGCAACGTTATTAAATA 57.268 25.926 0.00 0.00 0.00 1.40
657 676 3.002149 CGAAAGTGTCAAACAAAGCAACG 60.002 43.478 0.00 0.00 0.00 4.10
763 921 0.030638 CCGTTTGGTTGCTTGTCTGG 59.969 55.000 0.00 0.00 0.00 3.86
765 923 1.733526 GCCGTTTGGTTGCTTGTCT 59.266 52.632 0.00 0.00 37.67 3.41
768 926 1.370414 CTCGCCGTTTGGTTGCTTG 60.370 57.895 0.00 0.00 37.67 4.01
772 930 0.317519 GTTTCCTCGCCGTTTGGTTG 60.318 55.000 0.00 0.00 37.67 3.77
792 958 1.053424 TCTTGGCTAGAACCCGTGTT 58.947 50.000 0.00 0.00 37.42 3.32
821 987 1.308998 CGGATAAGGCCATCGCTTTT 58.691 50.000 5.01 0.00 35.62 2.27
888 1060 3.797546 GGCTCTTGCTGCTCGTGC 61.798 66.667 1.71 1.71 39.59 5.34
1171 1350 2.449967 TACCACCAGGAGCGGGAGAA 62.450 60.000 0.00 0.00 38.69 2.87
1237 1416 1.451936 GACTGGCAGAAGGTGTGGT 59.548 57.895 23.66 0.00 0.00 4.16
1345 1526 3.070302 GCTCAATCTAACTACCTCAGGGG 59.930 52.174 0.00 0.00 41.89 4.79
1386 1567 3.973206 TCTAAACAAAGCATCGGGAGA 57.027 42.857 0.00 0.00 46.90 3.71
1387 1568 5.567138 AATTCTAAACAAAGCATCGGGAG 57.433 39.130 0.00 0.00 0.00 4.30
1422 1603 4.715527 ACTGTATTTCCTACTGTCGTCC 57.284 45.455 0.00 0.00 37.84 4.79
1441 1622 4.901849 TCCATCTATAAAGTGCCAGCTACT 59.098 41.667 0.00 0.00 0.00 2.57
1442 1623 5.215252 TCCATCTATAAAGTGCCAGCTAC 57.785 43.478 0.00 0.00 0.00 3.58
1453 1634 5.133221 GCAGCTTTCCCTTCCATCTATAAA 58.867 41.667 0.00 0.00 0.00 1.40
1466 1647 2.234414 TCAATTGGATTGCAGCTTTCCC 59.766 45.455 5.42 0.46 40.05 3.97
1488 1669 0.462581 TGAGACCCGAATCTGCATGC 60.463 55.000 11.82 11.82 0.00 4.06
1507 1688 5.993748 ATACATCATTTCCCAAACCGTTT 57.006 34.783 0.00 0.00 0.00 3.60
1638 1820 9.276590 CACTGTTTCCTATCTATCAATGCATTA 57.723 33.333 12.53 1.34 0.00 1.90
1728 1910 0.893727 GTCCGGGCATGGTTCAAGTT 60.894 55.000 0.00 0.00 0.00 2.66
1731 1913 2.034999 GGTCCGGGCATGGTTCAA 59.965 61.111 9.07 0.00 0.00 2.69
1851 2034 3.391736 GCTCACTGCATGCTGGATA 57.608 52.632 25.87 11.44 42.31 2.59
1935 2118 3.182967 GTCTGATCAACGCCTAGTCTTG 58.817 50.000 0.00 0.00 0.00 3.02
2052 2235 1.761198 CAGCACATCATGAGGAGAGGA 59.239 52.381 15.42 0.00 0.00 3.71
2054 2237 2.937149 CAACAGCACATCATGAGGAGAG 59.063 50.000 15.42 5.34 0.00 3.20
2055 2238 2.355412 CCAACAGCACATCATGAGGAGA 60.355 50.000 15.42 0.00 0.00 3.71
2056 2239 2.014857 CCAACAGCACATCATGAGGAG 58.985 52.381 15.42 7.48 0.00 3.69
2057 2240 1.951895 GCCAACAGCACATCATGAGGA 60.952 52.381 15.42 0.00 42.97 3.71
2059 2242 0.454600 GGCCAACAGCACATCATGAG 59.545 55.000 0.09 0.00 46.50 2.90
2060 2243 0.038599 AGGCCAACAGCACATCATGA 59.961 50.000 5.01 0.00 46.50 3.07
2061 2244 0.454600 GAGGCCAACAGCACATCATG 59.545 55.000 5.01 0.00 46.50 3.07
2110 2301 3.689161 TGAACACTTACATACATGCCAGC 59.311 43.478 0.00 0.00 0.00 4.85
2146 2337 4.471904 TTGATCTTTCGATGGCTGTACT 57.528 40.909 0.00 0.00 0.00 2.73
2186 2378 0.032217 TTGCCTCCCAATTCCCATCC 60.032 55.000 0.00 0.00 0.00 3.51
2189 2381 0.251742 CAGTTGCCTCCCAATTCCCA 60.252 55.000 0.00 0.00 35.55 4.37
2198 2391 3.350219 TTTATCTGACCAGTTGCCTCC 57.650 47.619 0.00 0.00 0.00 4.30
2200 2393 3.535561 CGATTTATCTGACCAGTTGCCT 58.464 45.455 0.00 0.00 0.00 4.75
2203 2396 3.873910 ACCCGATTTATCTGACCAGTTG 58.126 45.455 0.00 0.00 0.00 3.16
2212 2405 5.568620 AATAGCTGGAACCCGATTTATCT 57.431 39.130 0.00 0.00 0.00 1.98
2213 2406 6.635030 AAAATAGCTGGAACCCGATTTATC 57.365 37.500 0.00 0.00 0.00 1.75
2245 2438 3.443099 AGGCAAGTTGTTCAGCTTTTC 57.557 42.857 4.48 0.00 0.00 2.29
2264 2457 9.651718 GCTTGGTATAATTTAATGAAGACGAAG 57.348 33.333 0.00 6.04 0.00 3.79
2277 2470 8.730680 CAGACAAAGTACAGCTTGGTATAATTT 58.269 33.333 0.00 0.00 41.26 1.82
2339 2535 6.018588 TGCAGATTTGTTGAGCATTTTGAAAG 60.019 34.615 0.00 0.00 0.00 2.62
2485 2681 7.428826 ACATTTCAACTTCAGAATGGAAGAAC 58.571 34.615 9.67 0.00 45.66 3.01
3122 3482 8.147058 CAGTTGTAGAGCTTAACTGGATATCAT 58.853 37.037 18.53 0.00 44.55 2.45
3142 3502 4.877378 ATTGTCATTGATTGGCAGTTGT 57.123 36.364 0.00 0.00 41.93 3.32
3525 3891 7.281040 ACAATGTGCAAATAGATCCCATAAG 57.719 36.000 0.00 0.00 0.00 1.73
3664 4050 4.201822 GCACCAAACGTCCTAATGAGAATC 60.202 45.833 0.00 0.00 0.00 2.52
3678 4064 1.131126 CAGGCATTAGAGCACCAAACG 59.869 52.381 0.00 0.00 35.83 3.60
3724 4110 3.454082 CAGGAAGCCTATCCCATATCTCC 59.546 52.174 0.00 0.00 40.59 3.71
3835 4237 6.353323 TGCGGAAATGATTTCTACTGGAATA 58.647 36.000 16.58 0.00 39.59 1.75
3839 4241 4.963276 TTGCGGAAATGATTTCTACTGG 57.037 40.909 16.58 4.16 39.59 4.00
4267 4670 7.175347 TGACTATGGATGCTACCAATCTATC 57.825 40.000 6.54 2.71 43.47 2.08
4268 4671 7.559335 TTGACTATGGATGCTACCAATCTAT 57.441 36.000 6.54 0.00 43.47 1.98
4269 4672 6.994421 TTGACTATGGATGCTACCAATCTA 57.006 37.500 6.54 1.21 43.47 1.98
4270 4673 5.894298 TTGACTATGGATGCTACCAATCT 57.106 39.130 6.54 0.00 43.47 2.40
4271 4674 5.822519 TGTTTGACTATGGATGCTACCAATC 59.177 40.000 6.54 6.02 43.47 2.67
4272 4675 5.754782 TGTTTGACTATGGATGCTACCAAT 58.245 37.500 6.54 0.00 43.47 3.16
4273 4676 5.172687 TGTTTGACTATGGATGCTACCAA 57.827 39.130 6.54 0.00 43.47 3.67
4274 4677 4.835284 TGTTTGACTATGGATGCTACCA 57.165 40.909 5.05 5.05 44.41 3.25
4320 4723 5.773680 GCCCACTACAGTATTCTGACCTATA 59.226 44.000 6.32 0.00 43.76 1.31
4355 4758 1.075542 TGCGTTTCTACAATCCTGCG 58.924 50.000 0.00 0.00 0.00 5.18
4408 4812 4.946160 AATCCTGTAGGGTTCAAATGGA 57.054 40.909 0.00 0.00 31.62 3.41
4418 4822 5.534654 TCAAACAAACTCAAATCCTGTAGGG 59.465 40.000 0.00 0.00 35.41 3.53
4468 4872 3.118186 TCCACTCCAACTTCTCGGAAAAA 60.118 43.478 0.00 0.00 0.00 1.94
4469 4873 2.436542 TCCACTCCAACTTCTCGGAAAA 59.563 45.455 0.00 0.00 0.00 2.29
4470 4874 2.043992 TCCACTCCAACTTCTCGGAAA 58.956 47.619 0.00 0.00 0.00 3.13
4471 4875 1.712056 TCCACTCCAACTTCTCGGAA 58.288 50.000 0.00 0.00 0.00 4.30
4472 4876 1.550524 CATCCACTCCAACTTCTCGGA 59.449 52.381 0.00 0.00 0.00 4.55
4473 4877 2.009042 GCATCCACTCCAACTTCTCGG 61.009 57.143 0.00 0.00 0.00 4.63
4474 4878 1.066573 AGCATCCACTCCAACTTCTCG 60.067 52.381 0.00 0.00 0.00 4.04
4475 4879 2.777832 AGCATCCACTCCAACTTCTC 57.222 50.000 0.00 0.00 0.00 2.87
4568 4995 9.099454 CCTCTGTAAAGAAATATAAGAGCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
4569 4996 7.711339 CCCTCTGTAAAGAAATATAAGAGCGTT 59.289 37.037 0.00 0.00 0.00 4.84
4570 4997 7.069578 TCCCTCTGTAAAGAAATATAAGAGCGT 59.930 37.037 0.00 0.00 0.00 5.07
4571 4998 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
4572 4999 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
4579 5006 9.667107 CATTTGTACTCCCTCTGTAAAGAAATA 57.333 33.333 0.00 0.00 0.00 1.40
4580 5007 8.164070 ACATTTGTACTCCCTCTGTAAAGAAAT 58.836 33.333 0.00 0.00 0.00 2.17
4581 5008 7.514721 ACATTTGTACTCCCTCTGTAAAGAAA 58.485 34.615 0.00 0.00 0.00 2.52
4582 5009 7.074653 ACATTTGTACTCCCTCTGTAAAGAA 57.925 36.000 0.00 0.00 0.00 2.52
4583 5010 6.681729 ACATTTGTACTCCCTCTGTAAAGA 57.318 37.500 0.00 0.00 0.00 2.52
4584 5011 7.094762 GGAAACATTTGTACTCCCTCTGTAAAG 60.095 40.741 0.00 0.00 0.00 1.85
4585 5012 6.713450 GGAAACATTTGTACTCCCTCTGTAAA 59.287 38.462 0.00 0.00 0.00 2.01
4586 5013 6.043938 AGGAAACATTTGTACTCCCTCTGTAA 59.956 38.462 7.71 0.00 33.11 2.41
4587 5014 5.546499 AGGAAACATTTGTACTCCCTCTGTA 59.454 40.000 7.71 0.00 33.11 2.74
4588 5015 4.351111 AGGAAACATTTGTACTCCCTCTGT 59.649 41.667 7.71 0.00 33.11 3.41
4589 5016 4.911390 AGGAAACATTTGTACTCCCTCTG 58.089 43.478 7.71 0.00 33.11 3.35
4590 5017 5.584551 AAGGAAACATTTGTACTCCCTCT 57.415 39.130 7.71 0.00 33.11 3.69
4591 5018 5.880887 CCTAAGGAAACATTTGTACTCCCTC 59.119 44.000 7.71 0.00 33.11 4.30
4592 5019 5.550403 TCCTAAGGAAACATTTGTACTCCCT 59.450 40.000 7.71 0.00 33.11 4.20
4593 5020 5.812286 TCCTAAGGAAACATTTGTACTCCC 58.188 41.667 7.71 0.00 33.11 4.30
4594 5021 7.754851 TTTCCTAAGGAAACATTTGTACTCC 57.245 36.000 0.00 4.36 45.42 3.85
4711 5149 1.333619 CCGATTCAAATGTTAGGGCCG 59.666 52.381 0.00 0.00 0.00 6.13
4978 5416 0.109153 TGCACACTCTGTTCCTGCAT 59.891 50.000 0.00 0.00 0.00 3.96
5104 5542 4.180057 GCACACATAGGAGAACTTGAGAG 58.820 47.826 0.00 0.00 0.00 3.20
5123 5561 0.804156 GAGCAGACCTCTAAGCGCAC 60.804 60.000 11.47 0.00 37.60 5.34
5202 5642 3.111098 CAGAAGTTGAAAGCACAGCAAC 58.889 45.455 0.00 0.00 41.53 4.17
5293 5733 3.135225 CTCACAAACGGTACCACAATCA 58.865 45.455 13.54 0.00 0.00 2.57
5318 5758 7.489113 ACAAGCTTAACACAAAAACTGAATGAG 59.511 33.333 0.00 0.00 0.00 2.90
5325 5765 7.248437 GTGACTACAAGCTTAACACAAAAACT 58.752 34.615 0.00 0.00 0.00 2.66
5326 5766 6.471198 GGTGACTACAAGCTTAACACAAAAAC 59.529 38.462 0.00 0.00 0.00 2.43
5389 5829 8.796475 ACACTAGCAGTTGAACAATATTTCAAT 58.204 29.630 5.99 0.00 45.04 2.57
5425 5868 5.757320 CCCTGCAAAGAATATAGACAGACAG 59.243 44.000 0.00 0.00 0.00 3.51
5450 5893 6.202954 GGATAAACCGTGAATAAGATGGAGTG 59.797 42.308 0.00 0.00 0.00 3.51
5463 5906 1.894466 TCGAACTGGGATAAACCGTGA 59.106 47.619 0.00 0.00 40.11 4.35
5485 5928 9.174166 GGAGCAAAAGTATAGGTGAGAAAATAA 57.826 33.333 0.00 0.00 0.00 1.40
5632 6075 6.327386 ACCTTGAACCATATTGTACCATCT 57.673 37.500 0.00 0.00 0.00 2.90
5669 6112 6.831976 ACTGAGGTAATGAAGTGAGAAAACT 58.168 36.000 0.00 0.00 0.00 2.66
5788 6234 5.791336 TGCTATCTTCGTCAATAGACCAT 57.209 39.130 5.34 0.00 41.87 3.55
5847 6293 8.378565 AGATAGAATTATGTGGTGAATACCCAG 58.621 37.037 0.00 0.00 46.96 4.45
5909 6355 5.476599 AGCTTCACAATAAATAACACTGGCA 59.523 36.000 0.00 0.00 0.00 4.92
5957 6458 1.694150 TGACCTCCATATAGGCAGTGC 59.306 52.381 6.55 6.55 40.62 4.40
6062 6563 0.104304 GCACTACTACATGTCCCCCG 59.896 60.000 0.00 0.00 0.00 5.73
6318 6905 8.632679 TGAAAGAGCAGACAGTTGAATTAAATT 58.367 29.630 0.00 0.00 0.00 1.82
6504 7091 4.895297 CAGGGGGATAACTGCAAAATGTAT 59.105 41.667 0.00 0.00 0.00 2.29
6526 7113 3.450817 TCGGCATCTCTTTTACCATCTCA 59.549 43.478 0.00 0.00 0.00 3.27
6607 7194 6.377996 ACATGACTAATTAGCTCCATGCAAAA 59.622 34.615 26.31 6.52 45.94 2.44
6750 7337 8.870075 AGCTGTACTTATTGATCCTTTTTCTT 57.130 30.769 0.00 0.00 0.00 2.52
6773 7485 3.877508 GACCCTGGTACACATTCATAAGC 59.122 47.826 0.00 0.00 0.00 3.09
6778 7490 3.248024 AGAAGACCCTGGTACACATTCA 58.752 45.455 0.00 0.00 0.00 2.57
6785 7497 4.508662 CAAATCTGAGAAGACCCTGGTAC 58.491 47.826 0.00 0.00 0.00 3.34
6788 7500 2.026449 AGCAAATCTGAGAAGACCCTGG 60.026 50.000 0.00 0.00 0.00 4.45
6795 7507 4.093115 CAGCACACTAGCAAATCTGAGAAG 59.907 45.833 0.00 0.00 36.85 2.85
6801 7513 2.189594 TGCAGCACACTAGCAAATCT 57.810 45.000 0.00 0.00 34.97 2.40
6803 7515 2.227388 GACTTGCAGCACACTAGCAAAT 59.773 45.455 0.00 0.00 46.30 2.32
6824 7536 5.705609 ACACCCTAATTTAGTTGTTGCAG 57.294 39.130 2.88 0.00 0.00 4.41
6880 7592 5.626543 CAGTTATATTGCAATGCGATCCAAC 59.373 40.000 22.27 15.50 34.19 3.77
6881 7593 5.278414 CCAGTTATATTGCAATGCGATCCAA 60.278 40.000 22.27 4.53 34.19 3.53
6883 7595 4.379813 CCCAGTTATATTGCAATGCGATCC 60.380 45.833 22.27 5.06 34.19 3.36
6884 7596 4.455533 TCCCAGTTATATTGCAATGCGATC 59.544 41.667 22.27 8.45 34.19 3.69
6886 7598 3.814625 TCCCAGTTATATTGCAATGCGA 58.185 40.909 22.27 2.13 0.00 5.10
6887 7599 4.771590 ATCCCAGTTATATTGCAATGCG 57.228 40.909 22.27 0.00 0.00 4.73
6900 7613 6.436027 TGACAAGATCTAGTCTATCCCAGTT 58.564 40.000 0.00 0.00 35.67 3.16
6920 7633 3.807622 GGTTCTTTCATGACGACTTGACA 59.192 43.478 0.00 0.00 31.52 3.58
6921 7634 3.807622 TGGTTCTTTCATGACGACTTGAC 59.192 43.478 0.00 0.00 31.52 3.18
6922 7635 3.807622 GTGGTTCTTTCATGACGACTTGA 59.192 43.478 0.00 0.00 0.00 3.02
6923 7636 3.058914 GGTGGTTCTTTCATGACGACTTG 60.059 47.826 0.00 0.00 0.00 3.16
6924 7637 3.139077 GGTGGTTCTTTCATGACGACTT 58.861 45.455 0.00 0.00 0.00 3.01
6925 7638 2.767505 GGTGGTTCTTTCATGACGACT 58.232 47.619 0.00 0.00 0.00 4.18
6926 7639 1.459592 CGGTGGTTCTTTCATGACGAC 59.540 52.381 0.00 0.00 0.00 4.34
6927 7640 1.069513 ACGGTGGTTCTTTCATGACGA 59.930 47.619 0.00 0.00 0.00 4.20
6928 7641 1.508632 ACGGTGGTTCTTTCATGACG 58.491 50.000 0.00 0.00 0.00 4.35
6929 7642 5.209977 GTTTTACGGTGGTTCTTTCATGAC 58.790 41.667 0.00 0.00 0.00 3.06
6945 7658 7.067532 TGTGTATTGCATCTTAGGTTTTACG 57.932 36.000 0.00 0.00 0.00 3.18
6968 7681 9.695526 TGTTCTGGTCAAAATTAATCAGAATTG 57.304 29.630 14.53 5.44 41.34 2.32
6995 7708 9.809096 TCAGAAGTATTATTAGCTCACAGAAAG 57.191 33.333 0.00 0.00 0.00 2.62
7191 7905 4.101942 GCGCATATCTCAGTATGTAGCTC 58.898 47.826 0.30 0.00 36.20 4.09
7205 7919 5.133264 CAGACAAATAAGAACGCGCATATC 58.867 41.667 5.73 1.51 0.00 1.63
7224 7938 2.887152 AGAAGGTTGGACATTTGCAGAC 59.113 45.455 0.00 0.00 0.00 3.51
7316 8030 4.119442 TCACTAACGGATAACTTGCTCC 57.881 45.455 0.00 0.00 0.00 4.70
7334 8048 2.995939 TCGTCTGAATTCACTGCATCAC 59.004 45.455 3.38 0.00 0.00 3.06
7359 8073 7.060864 GTCAACTTCTAGACGATGTCACTTAAC 59.939 40.741 2.78 0.00 34.60 2.01
7390 8104 6.485830 TGATGTTCTAATCCTAGGGTCAAG 57.514 41.667 9.46 3.35 0.00 3.02
7469 8183 1.489649 CATGTCCTCCATTCTGAGCCT 59.510 52.381 0.00 0.00 0.00 4.58
7513 8263 3.100862 GAAGAGGGATTGCGCACGC 62.101 63.158 11.12 8.52 42.35 5.34
7533 8283 5.638596 TCTTTCTGTAATACTGTCGCTCA 57.361 39.130 0.00 0.00 0.00 4.26
7537 8287 5.721510 GCGCTTTCTTTCTGTAATACTGTCG 60.722 44.000 0.00 0.00 0.00 4.35
7570 8320 5.127845 ACCTATATATGGGTGAGAGCGAATG 59.872 44.000 19.20 0.00 40.44 2.67
7591 8341 0.676782 GGTTATTCGTGCTGGCACCT 60.677 55.000 18.30 7.51 43.49 4.00
7608 8358 3.636764 GGAAATTCAGTGGTTCAAGTGGT 59.363 43.478 0.00 0.00 0.00 4.16
7659 8421 4.948004 GGAAGTTAATAACCACCCTTCCTG 59.052 45.833 11.55 0.00 42.89 3.86
7673 8436 5.491982 CCTGTCAGCTGTTAGGAAGTTAAT 58.508 41.667 25.20 0.00 31.91 1.40
7682 8454 1.347707 TGAACCCCTGTCAGCTGTTAG 59.652 52.381 14.67 12.71 0.00 2.34
7704 8477 4.701956 ACAACAGTTCAAACAACCTGAG 57.298 40.909 0.00 0.00 0.00 3.35
7728 8501 6.073003 GGCGAGATTTATAATTTGGACTCCAG 60.073 42.308 0.00 0.00 33.81 3.86
7729 8502 5.763204 GGCGAGATTTATAATTTGGACTCCA 59.237 40.000 0.00 0.00 0.00 3.86
7730 8503 5.998363 AGGCGAGATTTATAATTTGGACTCC 59.002 40.000 0.00 0.00 0.00 3.85
7740 8513 5.808366 ACTGATGGAGGCGAGATTTATAA 57.192 39.130 0.00 0.00 0.00 0.98
7746 8519 1.411977 CAGAACTGATGGAGGCGAGAT 59.588 52.381 0.00 0.00 0.00 2.75
7751 8524 0.532573 TCGTCAGAACTGATGGAGGC 59.467 55.000 19.56 2.11 44.52 4.70
7753 8526 3.584406 AACTCGTCAGAACTGATGGAG 57.416 47.619 22.18 22.18 44.52 3.86
7755 8528 5.410924 TGATAAACTCGTCAGAACTGATGG 58.589 41.667 19.56 14.03 44.52 3.51
7765 8538 3.186409 GCAAACAGCTGATAAACTCGTCA 59.814 43.478 23.35 0.00 41.15 4.35
7796 8569 1.019805 GTACACTGGAAAGAGCGGCC 61.020 60.000 0.00 0.00 0.00 6.13
7816 8591 3.340814 AACAGCTGATAACAGGGAGTG 57.659 47.619 23.35 0.00 43.62 3.51
7817 8592 3.584848 AGAAACAGCTGATAACAGGGAGT 59.415 43.478 23.35 0.00 43.62 3.85
7818 8593 3.937706 CAGAAACAGCTGATAACAGGGAG 59.062 47.826 23.35 0.00 43.62 4.30
7819 8594 3.307691 CCAGAAACAGCTGATAACAGGGA 60.308 47.826 23.35 0.00 43.62 4.20
7820 8595 3.012518 CCAGAAACAGCTGATAACAGGG 58.987 50.000 23.35 8.83 43.62 4.45
7821 8596 3.937706 CTCCAGAAACAGCTGATAACAGG 59.062 47.826 23.35 14.32 43.62 4.00
7822 8597 4.573900 ACTCCAGAAACAGCTGATAACAG 58.426 43.478 23.35 9.25 45.91 3.16
7823 8598 4.623932 ACTCCAGAAACAGCTGATAACA 57.376 40.909 23.35 0.00 38.14 2.41
7824 8599 5.725362 ACTACTCCAGAAACAGCTGATAAC 58.275 41.667 23.35 6.85 38.14 1.89
7825 8600 6.360370 AACTACTCCAGAAACAGCTGATAA 57.640 37.500 23.35 0.00 38.14 1.75
7826 8601 6.663953 ACTAACTACTCCAGAAACAGCTGATA 59.336 38.462 23.35 0.00 38.14 2.15
7827 8602 4.899352 AACTACTCCAGAAACAGCTGAT 57.101 40.909 23.35 5.41 38.14 2.90
7828 8603 4.833380 ACTAACTACTCCAGAAACAGCTGA 59.167 41.667 23.35 0.00 38.14 4.26
7829 8604 5.140747 ACTAACTACTCCAGAAACAGCTG 57.859 43.478 13.48 13.48 35.66 4.24
7830 8605 5.810080 AACTAACTACTCCAGAAACAGCT 57.190 39.130 0.00 0.00 0.00 4.24
7831 8606 5.868258 GGTAACTAACTACTCCAGAAACAGC 59.132 44.000 0.00 0.00 0.00 4.40
7832 8607 6.014840 TGGGTAACTAACTACTCCAGAAACAG 60.015 42.308 0.00 0.00 0.00 3.16
7833 8608 5.840149 TGGGTAACTAACTACTCCAGAAACA 59.160 40.000 0.00 0.00 0.00 2.83
7834 8609 6.350629 TGGGTAACTAACTACTCCAGAAAC 57.649 41.667 0.00 0.00 0.00 2.78
7835 8610 6.958192 AGATGGGTAACTAACTACTCCAGAAA 59.042 38.462 0.00 0.00 30.52 2.52
7836 8611 6.500336 AGATGGGTAACTAACTACTCCAGAA 58.500 40.000 0.00 0.00 30.52 3.02
7837 8612 6.088541 AGATGGGTAACTAACTACTCCAGA 57.911 41.667 0.00 0.00 30.52 3.86
7838 8613 6.183360 GGAAGATGGGTAACTAACTACTCCAG 60.183 46.154 0.00 0.00 30.30 3.86
7839 8614 5.659971 GGAAGATGGGTAACTAACTACTCCA 59.340 44.000 0.00 0.00 30.30 3.86
7840 8615 5.898397 AGGAAGATGGGTAACTAACTACTCC 59.102 44.000 0.00 0.00 30.07 3.85
7841 8616 7.093421 ACAAGGAAGATGGGTAACTAACTACTC 60.093 40.741 0.00 0.00 27.44 2.59
7842 8617 6.729569 ACAAGGAAGATGGGTAACTAACTACT 59.270 38.462 0.00 0.00 27.44 2.57
7889 8669 1.068610 GTGCACCAAGGTACGTACGTA 60.069 52.381 23.60 23.60 0.00 3.57
7890 8670 0.318955 GTGCACCAAGGTACGTACGT 60.319 55.000 25.98 25.98 0.00 3.57
7891 8671 0.318869 TGTGCACCAAGGTACGTACG 60.319 55.000 18.98 15.01 0.00 3.67
7892 8672 2.088950 ATGTGCACCAAGGTACGTAC 57.911 50.000 17.56 17.56 0.00 3.67
7893 8673 5.510009 CCATATATGTGCACCAAGGTACGTA 60.510 44.000 15.69 0.00 31.07 3.57
7894 8674 4.377021 CATATATGTGCACCAAGGTACGT 58.623 43.478 15.69 0.00 0.00 3.57
7895 8675 3.745975 CCATATATGTGCACCAAGGTACG 59.254 47.826 15.69 0.00 0.00 3.67
7920 8700 5.557891 GCACATTATTGCCTCATCTATCC 57.442 43.478 0.00 0.00 36.42 2.59
7948 8728 2.383855 CAAAACCTGGGGTGAGAAACA 58.616 47.619 0.00 0.00 35.34 2.83
7997 8778 4.685302 GCTCTCATCATTTGACAGGATGGA 60.685 45.833 11.55 8.29 43.62 3.41
7998 8779 3.564644 GCTCTCATCATTTGACAGGATGG 59.435 47.826 11.55 5.58 43.62 3.51
7999 8780 3.564644 GGCTCTCATCATTTGACAGGATG 59.435 47.826 7.24 7.24 46.00 3.51
8000 8781 3.434739 GGGCTCTCATCATTTGACAGGAT 60.435 47.826 0.00 0.00 0.00 3.24
8035 8816 4.794439 TGATGAGGCCGACGTGCG 62.794 66.667 0.00 0.00 40.47 5.34
8047 8828 3.993614 AAAGGCCCGCGCATGATGA 62.994 57.895 8.75 0.00 36.38 2.92
8066 8847 2.043450 AGCACGAGGAGGAGGGAG 60.043 66.667 0.00 0.00 0.00 4.30
8067 8848 2.043852 GAGCACGAGGAGGAGGGA 60.044 66.667 0.00 0.00 0.00 4.20
8068 8849 3.522731 CGAGCACGAGGAGGAGGG 61.523 72.222 0.00 0.00 42.66 4.30
8069 8850 4.200283 GCGAGCACGAGGAGGAGG 62.200 72.222 8.01 0.00 42.66 4.30
8070 8851 4.200283 GGCGAGCACGAGGAGGAG 62.200 72.222 8.01 0.00 42.66 3.69
8075 8856 4.735132 TTTCCGGCGAGCACGAGG 62.735 66.667 9.30 9.89 42.66 4.63
8158 8945 3.925914 AACCTGACGGGAGGGAGGG 62.926 68.421 7.51 0.00 37.45 4.30
8159 8946 2.284699 AACCTGACGGGAGGGAGG 60.285 66.667 7.51 0.00 37.45 4.30
8160 8947 2.982130 CAACCTGACGGGAGGGAG 59.018 66.667 7.51 0.00 37.45 4.30
8161 8948 3.319198 GCAACCTGACGGGAGGGA 61.319 66.667 7.51 0.00 37.45 4.20
8212 8999 0.899717 CCTAGCAAAGCAAAGCCCCA 60.900 55.000 0.00 0.00 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.