Multiple sequence alignment - TraesCS5B01G205300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G205300 chr5B 100.000 2690 0 0 1 2690 373531092 373528403 0.000000e+00 4968
1 TraesCS5B01G205300 chr5D 93.147 2437 90 32 269 2690 322185040 322182666 0.000000e+00 3504
2 TraesCS5B01G205300 chr5D 85.409 281 34 4 391 669 322186151 322185876 4.380000e-73 285
3 TraesCS5B01G205300 chr5A 88.606 1887 133 43 269 2107 417332470 417330618 0.000000e+00 2218
4 TraesCS5B01G205300 chr5A 78.561 681 90 39 3 669 417333974 417333336 5.400000e-107 398
5 TraesCS5B01G205300 chr5A 82.979 188 31 1 2497 2683 417322626 417322439 4.610000e-38 169


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G205300 chr5B 373528403 373531092 2689 True 4968.0 4968 100.0000 1 2690 1 chr5B.!!$R1 2689
1 TraesCS5B01G205300 chr5D 322182666 322186151 3485 True 1894.5 3504 89.2780 269 2690 2 chr5D.!!$R1 2421
2 TraesCS5B01G205300 chr5A 417330618 417333974 3356 True 1308.0 2218 83.5835 3 2107 2 chr5A.!!$R2 2104

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 1379 0.099436 GTCTTGCGTGAATGATGCCC 59.901 55.0 0.0 0.0 35.48 5.36 F
182 1381 0.099968 CTTGCGTGAATGATGCCCAG 59.900 55.0 0.0 0.0 35.48 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1114 2366 0.246635 GACTGCCGCTGGAAACTAGA 59.753 55.0 0.00 0.0 0.0 2.43 R
1943 3212 0.327576 CATAGGGGTGGGGAGTCCTT 60.328 60.0 9.58 0.0 36.2 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.779115 GGTAAATGGTTTGCCTTGTTTAAG 57.221 37.500 2.81 0.00 41.55 1.85
28 29 7.552458 AATGGTTTGCCTTGTTTAAGAAAAG 57.448 32.000 0.00 0.00 35.92 2.27
30 31 5.187967 TGGTTTGCCTTGTTTAAGAAAAGGA 59.812 36.000 14.02 1.41 42.65 3.36
77 1276 3.936453 TGTAGCTGGGCAACTAATTAACG 59.064 43.478 0.00 0.00 0.00 3.18
116 1315 5.356882 TTTTCCTTCGTATGAGTGCTTTG 57.643 39.130 0.00 0.00 0.00 2.77
117 1316 2.346803 TCCTTCGTATGAGTGCTTTGC 58.653 47.619 0.00 0.00 0.00 3.68
118 1317 2.028112 TCCTTCGTATGAGTGCTTTGCT 60.028 45.455 0.00 0.00 0.00 3.91
119 1318 2.744202 CCTTCGTATGAGTGCTTTGCTT 59.256 45.455 0.00 0.00 0.00 3.91
121 1320 4.320494 CCTTCGTATGAGTGCTTTGCTTTT 60.320 41.667 0.00 0.00 0.00 2.27
122 1321 4.829064 TCGTATGAGTGCTTTGCTTTTT 57.171 36.364 0.00 0.00 0.00 1.94
123 1322 4.783242 TCGTATGAGTGCTTTGCTTTTTC 58.217 39.130 0.00 0.00 0.00 2.29
124 1323 4.515191 TCGTATGAGTGCTTTGCTTTTTCT 59.485 37.500 0.00 0.00 0.00 2.52
125 1324 4.614284 CGTATGAGTGCTTTGCTTTTTCTG 59.386 41.667 0.00 0.00 0.00 3.02
126 1325 3.441496 TGAGTGCTTTGCTTTTTCTGG 57.559 42.857 0.00 0.00 0.00 3.86
127 1326 2.101249 TGAGTGCTTTGCTTTTTCTGGG 59.899 45.455 0.00 0.00 0.00 4.45
128 1327 1.202568 AGTGCTTTGCTTTTTCTGGGC 60.203 47.619 0.00 0.00 0.00 5.36
130 1329 1.202557 TGCTTTGCTTTTTCTGGGCTG 60.203 47.619 0.00 0.00 0.00 4.85
131 1330 1.875157 GCTTTGCTTTTTCTGGGCTGG 60.875 52.381 0.00 0.00 0.00 4.85
132 1331 1.413812 CTTTGCTTTTTCTGGGCTGGT 59.586 47.619 0.00 0.00 0.00 4.00
134 1333 0.396974 TGCTTTTTCTGGGCTGGTGT 60.397 50.000 0.00 0.00 0.00 4.16
135 1334 1.133637 TGCTTTTTCTGGGCTGGTGTA 60.134 47.619 0.00 0.00 0.00 2.90
137 1336 2.863809 CTTTTTCTGGGCTGGTGTACT 58.136 47.619 0.00 0.00 0.00 2.73
138 1337 2.561478 TTTTCTGGGCTGGTGTACTC 57.439 50.000 0.00 0.00 0.00 2.59
140 1339 1.267121 TTCTGGGCTGGTGTACTCTC 58.733 55.000 0.00 0.00 0.00 3.20
141 1340 0.114364 TCTGGGCTGGTGTACTCTCA 59.886 55.000 0.00 0.00 0.00 3.27
143 1342 0.114364 TGGGCTGGTGTACTCTCAGA 59.886 55.000 13.97 0.00 0.00 3.27
144 1343 1.267121 GGGCTGGTGTACTCTCAGAA 58.733 55.000 13.97 0.00 0.00 3.02
145 1344 1.834263 GGGCTGGTGTACTCTCAGAAT 59.166 52.381 13.97 0.00 0.00 2.40
146 1345 3.031736 GGGCTGGTGTACTCTCAGAATA 58.968 50.000 13.97 0.00 0.00 1.75
148 1347 3.702045 GGCTGGTGTACTCTCAGAATAGT 59.298 47.826 13.97 0.00 0.00 2.12
149 1348 4.160626 GGCTGGTGTACTCTCAGAATAGTT 59.839 45.833 13.97 0.00 0.00 2.24
150 1349 5.337652 GGCTGGTGTACTCTCAGAATAGTTT 60.338 44.000 13.97 0.00 0.00 2.66
151 1350 5.578727 GCTGGTGTACTCTCAGAATAGTTTG 59.421 44.000 13.97 0.00 0.00 2.93
152 1351 6.572509 GCTGGTGTACTCTCAGAATAGTTTGA 60.573 42.308 13.97 0.00 0.00 2.69
153 1352 6.925211 TGGTGTACTCTCAGAATAGTTTGAG 58.075 40.000 4.44 4.44 41.67 3.02
154 1353 6.719829 TGGTGTACTCTCAGAATAGTTTGAGA 59.280 38.462 12.24 12.24 45.51 3.27
160 1359 3.866651 TCAGAATAGTTTGAGAGGCTGC 58.133 45.455 0.00 0.00 0.00 5.25
161 1360 2.606725 CAGAATAGTTTGAGAGGCTGCG 59.393 50.000 0.00 0.00 0.00 5.18
162 1361 2.234908 AGAATAGTTTGAGAGGCTGCGT 59.765 45.455 0.00 0.00 0.00 5.24
163 1362 2.301577 ATAGTTTGAGAGGCTGCGTC 57.698 50.000 14.08 14.08 0.00 5.19
167 1366 1.230635 TTTGAGAGGCTGCGTCTTGC 61.231 55.000 23.83 13.75 46.70 4.01
178 1377 0.858961 GCGTCTTGCGTGAATGATGC 60.859 55.000 0.00 0.00 43.66 3.91
179 1378 0.247814 CGTCTTGCGTGAATGATGCC 60.248 55.000 0.00 0.00 35.48 4.40
180 1379 0.099436 GTCTTGCGTGAATGATGCCC 59.901 55.000 0.00 0.00 35.48 5.36
181 1380 0.322366 TCTTGCGTGAATGATGCCCA 60.322 50.000 0.00 0.00 35.48 5.36
182 1381 0.099968 CTTGCGTGAATGATGCCCAG 59.900 55.000 0.00 0.00 35.48 4.45
183 1382 1.936436 TTGCGTGAATGATGCCCAGC 61.936 55.000 0.00 0.00 35.48 4.85
184 1383 2.117156 GCGTGAATGATGCCCAGCT 61.117 57.895 0.00 0.00 0.00 4.24
185 1384 1.725665 CGTGAATGATGCCCAGCTG 59.274 57.895 6.78 6.78 0.00 4.24
187 1386 1.035932 GTGAATGATGCCCAGCTGCT 61.036 55.000 8.66 0.00 0.00 4.24
188 1387 0.323999 TGAATGATGCCCAGCTGCTT 60.324 50.000 8.66 0.00 0.00 3.91
189 1388 0.822164 GAATGATGCCCAGCTGCTTT 59.178 50.000 8.66 0.00 0.00 3.51
190 1389 1.206371 GAATGATGCCCAGCTGCTTTT 59.794 47.619 8.66 0.00 0.00 2.27
191 1390 0.535335 ATGATGCCCAGCTGCTTTTG 59.465 50.000 8.66 0.00 0.00 2.44
192 1391 0.828762 TGATGCCCAGCTGCTTTTGT 60.829 50.000 8.66 0.00 0.00 2.83
193 1392 1.176527 GATGCCCAGCTGCTTTTGTA 58.823 50.000 8.66 0.00 0.00 2.41
194 1393 1.545582 GATGCCCAGCTGCTTTTGTAA 59.454 47.619 8.66 0.00 0.00 2.41
195 1394 1.407936 TGCCCAGCTGCTTTTGTAAA 58.592 45.000 8.66 0.00 0.00 2.01
196 1395 1.340889 TGCCCAGCTGCTTTTGTAAAG 59.659 47.619 8.66 0.00 0.00 1.85
198 1397 2.556622 GCCCAGCTGCTTTTGTAAAGTA 59.443 45.455 8.66 0.00 0.00 2.24
199 1398 3.005367 GCCCAGCTGCTTTTGTAAAGTAA 59.995 43.478 8.66 0.00 0.00 2.24
200 1399 4.546570 CCCAGCTGCTTTTGTAAAGTAAC 58.453 43.478 8.66 0.00 0.00 2.50
203 1402 5.458779 CCAGCTGCTTTTGTAAAGTAACAAC 59.541 40.000 8.66 0.00 39.02 3.32
204 1403 5.171337 CAGCTGCTTTTGTAAAGTAACAACG 59.829 40.000 0.00 0.00 39.02 4.10
205 1404 4.085772 GCTGCTTTTGTAAAGTAACAACGC 60.086 41.667 0.00 0.00 39.02 4.84
206 1405 4.029704 TGCTTTTGTAAAGTAACAACGCG 58.970 39.130 3.53 3.53 39.02 6.01
207 1406 4.201792 TGCTTTTGTAAAGTAACAACGCGA 60.202 37.500 15.93 0.00 39.02 5.87
208 1407 4.374828 GCTTTTGTAAAGTAACAACGCGAG 59.625 41.667 15.93 7.57 39.02 5.03
211 1410 5.505165 TTGTAAAGTAACAACGCGAGATC 57.495 39.130 15.93 0.00 34.50 2.75
212 1411 3.605056 TGTAAAGTAACAACGCGAGATCG 59.395 43.478 15.93 0.00 43.27 3.69
213 1412 2.624316 AAGTAACAACGCGAGATCGA 57.376 45.000 15.93 0.00 43.02 3.59
215 1414 3.146618 AGTAACAACGCGAGATCGAAT 57.853 42.857 15.93 0.00 43.02 3.34
216 1415 2.852413 AGTAACAACGCGAGATCGAATG 59.148 45.455 15.93 3.88 43.02 2.67
217 1416 1.990799 AACAACGCGAGATCGAATGA 58.009 45.000 15.93 0.00 43.02 2.57
218 1417 2.209838 ACAACGCGAGATCGAATGAT 57.790 45.000 15.93 0.00 43.02 2.45
219 1418 2.540515 ACAACGCGAGATCGAATGATT 58.459 42.857 15.93 0.00 43.02 2.57
220 1419 2.535984 ACAACGCGAGATCGAATGATTC 59.464 45.455 15.93 0.00 43.02 2.52
221 1420 2.783828 ACGCGAGATCGAATGATTCT 57.216 45.000 15.93 0.00 43.02 2.40
223 1422 4.224715 ACGCGAGATCGAATGATTCTAA 57.775 40.909 15.93 0.00 43.02 2.10
224 1423 4.607955 ACGCGAGATCGAATGATTCTAAA 58.392 39.130 15.93 0.00 43.02 1.85
225 1424 4.441415 ACGCGAGATCGAATGATTCTAAAC 59.559 41.667 15.93 0.00 43.02 2.01
228 1427 6.350974 GCGAGATCGAATGATTCTAAACTTG 58.649 40.000 6.39 1.67 43.02 3.16
229 1428 6.350974 CGAGATCGAATGATTCTAAACTTGC 58.649 40.000 3.43 0.00 43.02 4.01
230 1429 6.199908 CGAGATCGAATGATTCTAAACTTGCT 59.800 38.462 3.43 0.00 43.02 3.91
231 1430 7.244166 AGATCGAATGATTCTAAACTTGCTG 57.756 36.000 3.43 0.00 34.09 4.41
232 1431 5.221891 TCGAATGATTCTAAACTTGCTGC 57.778 39.130 3.43 0.00 0.00 5.25
233 1432 4.024438 CGAATGATTCTAAACTTGCTGCG 58.976 43.478 3.43 0.00 0.00 5.18
234 1433 4.346129 GAATGATTCTAAACTTGCTGCGG 58.654 43.478 0.00 0.00 0.00 5.69
235 1434 1.468520 TGATTCTAAACTTGCTGCGGC 59.531 47.619 11.65 11.65 39.26 6.53
236 1435 1.740025 GATTCTAAACTTGCTGCGGCT 59.260 47.619 20.27 0.00 39.59 5.52
237 1436 0.874390 TTCTAAACTTGCTGCGGCTG 59.126 50.000 20.27 13.90 39.59 4.85
238 1437 1.154150 CTAAACTTGCTGCGGCTGC 60.154 57.895 22.87 22.87 43.20 5.25
248 1447 2.920126 GCGGCTGCGTTTTGTTTG 59.080 55.556 0.00 0.00 0.00 2.93
250 1449 1.807242 GCGGCTGCGTTTTGTTTGTC 61.807 55.000 0.00 0.00 0.00 3.18
251 1450 0.524392 CGGCTGCGTTTTGTTTGTCA 60.524 50.000 0.00 0.00 0.00 3.58
252 1451 0.920664 GGCTGCGTTTTGTTTGTCAC 59.079 50.000 0.00 0.00 0.00 3.67
253 1452 1.623359 GCTGCGTTTTGTTTGTCACA 58.377 45.000 0.00 0.00 0.00 3.58
256 1455 3.729462 GCTGCGTTTTGTTTGTCACACTA 60.729 43.478 0.00 0.00 33.98 2.74
257 1456 4.009798 TGCGTTTTGTTTGTCACACTAG 57.990 40.909 0.00 0.00 33.98 2.57
258 1457 2.781646 GCGTTTTGTTTGTCACACTAGC 59.218 45.455 0.00 0.00 33.98 3.42
261 1460 4.102649 GTTTTGTTTGTCACACTAGCACC 58.897 43.478 0.00 0.00 33.98 5.01
262 1461 2.700722 TGTTTGTCACACTAGCACCA 57.299 45.000 0.00 0.00 0.00 4.17
263 1462 2.992593 TGTTTGTCACACTAGCACCAA 58.007 42.857 0.00 0.00 0.00 3.67
265 1464 3.759086 TGTTTGTCACACTAGCACCAAAA 59.241 39.130 0.00 0.00 0.00 2.44
267 1466 2.294074 TGTCACACTAGCACCAAAACC 58.706 47.619 0.00 0.00 0.00 3.27
269 1468 1.213182 TCACACTAGCACCAAAACCCA 59.787 47.619 0.00 0.00 0.00 4.51
270 1469 2.158534 TCACACTAGCACCAAAACCCAT 60.159 45.455 0.00 0.00 0.00 4.00
271 1470 2.030007 CACACTAGCACCAAAACCCATG 60.030 50.000 0.00 0.00 0.00 3.66
272 1471 1.545582 CACTAGCACCAAAACCCATGG 59.454 52.381 4.14 4.14 43.84 3.66
284 1524 3.594453 CCCATGGGTTACTGCACAT 57.406 52.632 23.93 0.00 31.72 3.21
291 1531 2.502130 TGGGTTACTGCACATATCCGAA 59.498 45.455 0.00 0.00 0.00 4.30
305 1545 6.252228 CACATATCCGAAGTCGATATGATGTG 59.748 42.308 24.09 19.25 43.02 3.21
313 1553 1.541588 TCGATATGATGTGCTCCCTCG 59.458 52.381 0.00 0.00 0.00 4.63
355 1599 8.807581 CCTACAATTTGTTTTCTGAAGTCAAAC 58.192 33.333 7.45 9.01 32.25 2.93
359 1603 9.232082 CAATTTGTTTTCTGAAGTCAAACGATA 57.768 29.630 17.49 3.80 33.81 2.92
362 1606 9.872757 TTTGTTTTCTGAAGTCAAACGATATAC 57.127 29.630 13.77 0.00 33.81 1.47
363 1607 8.596271 TGTTTTCTGAAGTCAAACGATATACA 57.404 30.769 0.00 0.00 33.81 2.29
389 1633 9.944376 AGTTTGACTGAGTTTATATGCTAAGAA 57.056 29.630 0.00 0.00 0.00 2.52
404 1648 7.573968 ATGCTAAGAAAAAGTTTGACTGAGT 57.426 32.000 0.00 0.00 0.00 3.41
405 1649 7.391148 TGCTAAGAAAAAGTTTGACTGAGTT 57.609 32.000 0.00 0.00 0.00 3.01
406 1650 7.826690 TGCTAAGAAAAAGTTTGACTGAGTTT 58.173 30.769 0.00 0.00 0.00 2.66
407 1651 8.952278 TGCTAAGAAAAAGTTTGACTGAGTTTA 58.048 29.630 0.00 0.00 0.00 2.01
408 1652 9.952188 GCTAAGAAAAAGTTTGACTGAGTTTAT 57.048 29.630 0.00 0.00 0.00 1.40
572 1817 9.329913 CAAATAACAATTGTAGGTCTTCTTTCG 57.670 33.333 12.39 0.00 0.00 3.46
621 1866 9.941664 AATATTCTACTTTCAAATGATTGAGCG 57.058 29.630 0.00 0.00 45.82 5.03
789 2034 4.709886 TGTCATATTCTTCTTCCTCCGACA 59.290 41.667 0.00 0.00 0.00 4.35
906 2151 0.471401 ACCGTATAAGAGGGCCCTCC 60.471 60.000 42.54 27.72 43.70 4.30
916 2161 1.075748 GGGCCCTCCAAATGCATCT 60.076 57.895 17.04 0.00 35.00 2.90
943 2188 4.768583 TCATAACATATGTGCACAGCAGA 58.231 39.130 25.84 10.63 40.08 4.26
948 2193 1.812235 TATGTGCACAGCAGAACCAG 58.188 50.000 25.84 0.00 40.08 4.00
1114 2366 2.262915 CTGCCGCGGTTTCTCTCT 59.737 61.111 28.70 0.00 0.00 3.10
1117 2369 0.963856 TGCCGCGGTTTCTCTCTCTA 60.964 55.000 28.70 0.00 0.00 2.43
1241 2498 5.243730 CCCCCGTCGGTAAGATAACTTTATA 59.756 44.000 11.06 0.00 37.53 0.98
1243 2500 7.381323 CCCCGTCGGTAAGATAACTTTATATT 58.619 38.462 11.06 0.00 37.53 1.28
1244 2501 7.543520 CCCCGTCGGTAAGATAACTTTATATTC 59.456 40.741 11.06 0.00 37.53 1.75
1245 2502 7.543520 CCCGTCGGTAAGATAACTTTATATTCC 59.456 40.741 11.06 0.00 37.53 3.01
1246 2503 7.272084 CCGTCGGTAAGATAACTTTATATTCCG 59.728 40.741 2.08 14.45 36.94 4.30
1248 2505 8.909671 GTCGGTAAGATAACTTTATATTCCGTG 58.090 37.037 17.23 2.18 36.94 4.94
1249 2506 7.596248 TCGGTAAGATAACTTTATATTCCGTGC 59.404 37.037 17.23 0.00 36.94 5.34
1250 2507 7.383029 CGGTAAGATAACTTTATATTCCGTGCA 59.617 37.037 13.38 0.00 37.53 4.57
1269 2526 2.863153 GTGCACCACACTGATCGC 59.137 61.111 5.22 0.00 46.41 4.58
1350 2615 2.147387 GGAGCGGTGGGGGATACAT 61.147 63.158 0.00 0.00 39.74 2.29
1364 2629 1.412710 GATACATGAGAGGGCCGACAA 59.587 52.381 0.00 0.00 0.00 3.18
1794 3063 6.129179 AGAGACCCATGAAAAACTTCTTCAA 58.871 36.000 0.00 0.00 36.43 2.69
1940 3209 7.012044 GGTATTTGTTGTGTTTGTGAGTCTACT 59.988 37.037 0.00 0.00 0.00 2.57
1941 3210 6.417191 TTTGTTGTGTTTGTGAGTCTACTC 57.583 37.500 3.08 3.08 43.15 2.59
1943 3212 4.142337 TGTTGTGTTTGTGAGTCTACTCGA 60.142 41.667 5.69 0.00 45.72 4.04
1944 3213 4.642445 TGTGTTTGTGAGTCTACTCGAA 57.358 40.909 5.69 0.00 45.72 3.71
1945 3214 4.607955 TGTGTTTGTGAGTCTACTCGAAG 58.392 43.478 5.69 0.00 45.72 3.79
1969 3256 0.688418 CCCCACCCCTATGTCACGTA 60.688 60.000 0.00 0.00 0.00 3.57
2133 3425 0.463833 AGCTTTACCATGGGCTACGC 60.464 55.000 18.09 11.57 32.94 4.42
2162 3454 3.082055 GGTCGGGGTCTTCCTCCC 61.082 72.222 0.00 0.00 43.90 4.30
2258 3551 2.040412 AGGAACTTCCTTCATCACCACC 59.960 50.000 4.29 0.00 46.91 4.61
2303 3596 0.865769 CAAGAGTTGCACGGTACCAC 59.134 55.000 13.54 1.55 0.00 4.16
2373 3666 9.486123 TTGTGATAATTATTTCTTGGGGATTCA 57.514 29.630 0.00 0.00 0.00 2.57
2374 3667 9.486123 TGTGATAATTATTTCTTGGGGATTCAA 57.514 29.630 0.00 0.00 0.00 2.69
2377 3670 9.846248 GATAATTATTTCTTGGGGATTCAATCG 57.154 33.333 0.00 0.00 0.00 3.34
2399 3692 4.082787 CGACAGAAATGTATTGCAAGGGTT 60.083 41.667 4.94 0.00 0.00 4.11
2450 3743 8.716646 ACATTCATGTATAGACAATCGAACAA 57.283 30.769 0.00 0.00 39.59 2.83
2571 3864 8.656849 CAAATGCTTATGTCTAGTTTAGTTCGT 58.343 33.333 0.00 0.00 0.00 3.85
2581 3874 2.032924 AGTTTAGTTCGTTTGGTGCAGC 59.967 45.455 9.47 9.47 0.00 5.25
2587 3880 1.204062 CGTTTGGTGCAGCACGTAG 59.796 57.895 20.03 6.77 34.83 3.51
2606 3899 2.639487 AGAAAAACCTAGCCCCTACCA 58.361 47.619 0.00 0.00 0.00 3.25
2625 3918 1.072965 CACCAGATCAATAGCCCTCCC 59.927 57.143 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.517605 TCTTAAACAAGGCAAACCATTTACC 58.482 36.000 0.00 0.00 39.06 2.85
1 2 8.426881 TTTCTTAAACAAGGCAAACCATTTAC 57.573 30.769 0.00 0.00 39.06 2.01
2 3 9.103861 CTTTTCTTAAACAAGGCAAACCATTTA 57.896 29.630 0.00 0.00 39.06 1.40
3 4 7.066887 CCTTTTCTTAAACAAGGCAAACCATTT 59.933 33.333 0.00 0.00 39.06 2.32
4 5 6.542005 CCTTTTCTTAAACAAGGCAAACCATT 59.458 34.615 0.00 0.00 39.06 3.16
5 6 6.054941 CCTTTTCTTAAACAAGGCAAACCAT 58.945 36.000 0.00 0.00 39.06 3.55
8 9 7.042051 GGAATCCTTTTCTTAAACAAGGCAAAC 60.042 37.037 0.00 0.00 37.57 2.93
11 12 5.838521 AGGAATCCTTTTCTTAAACAAGGCA 59.161 36.000 0.00 0.00 37.57 4.75
12 13 6.346477 AGGAATCCTTTTCTTAAACAAGGC 57.654 37.500 0.00 0.00 37.57 4.35
21 22 9.822727 TTTAGGTATTCAAGGAATCCTTTTCTT 57.177 29.630 12.63 0.55 41.69 2.52
23 24 9.244292 AGTTTAGGTATTCAAGGAATCCTTTTC 57.756 33.333 12.63 0.00 41.69 2.29
41 42 5.246429 GCCCAGCTACAGATATAGTTTAGGT 59.754 44.000 0.00 0.00 0.00 3.08
54 55 4.034048 CGTTAATTAGTTGCCCAGCTACAG 59.966 45.833 4.12 0.00 36.81 2.74
97 1296 2.028112 AGCAAAGCACTCATACGAAGGA 60.028 45.455 0.00 0.00 0.00 3.36
99 1298 4.410492 AAAGCAAAGCACTCATACGAAG 57.590 40.909 0.00 0.00 0.00 3.79
100 1299 4.829064 AAAAGCAAAGCACTCATACGAA 57.171 36.364 0.00 0.00 0.00 3.85
101 1300 4.515191 AGAAAAAGCAAAGCACTCATACGA 59.485 37.500 0.00 0.00 0.00 3.43
102 1301 4.614284 CAGAAAAAGCAAAGCACTCATACG 59.386 41.667 0.00 0.00 0.00 3.06
103 1302 4.919754 CCAGAAAAAGCAAAGCACTCATAC 59.080 41.667 0.00 0.00 0.00 2.39
104 1303 4.022068 CCCAGAAAAAGCAAAGCACTCATA 60.022 41.667 0.00 0.00 0.00 2.15
106 1305 2.101249 CCCAGAAAAAGCAAAGCACTCA 59.899 45.455 0.00 0.00 0.00 3.41
107 1306 2.747436 CCCAGAAAAAGCAAAGCACTC 58.253 47.619 0.00 0.00 0.00 3.51
109 1308 1.202568 AGCCCAGAAAAAGCAAAGCAC 60.203 47.619 0.00 0.00 0.00 4.40
110 1309 1.122227 AGCCCAGAAAAAGCAAAGCA 58.878 45.000 0.00 0.00 0.00 3.91
111 1310 1.505425 CAGCCCAGAAAAAGCAAAGC 58.495 50.000 0.00 0.00 0.00 3.51
112 1311 1.413812 ACCAGCCCAGAAAAAGCAAAG 59.586 47.619 0.00 0.00 0.00 2.77
113 1312 1.138661 CACCAGCCCAGAAAAAGCAAA 59.861 47.619 0.00 0.00 0.00 3.68
114 1313 0.752054 CACCAGCCCAGAAAAAGCAA 59.248 50.000 0.00 0.00 0.00 3.91
116 1315 1.269723 GTACACCAGCCCAGAAAAAGC 59.730 52.381 0.00 0.00 0.00 3.51
117 1316 2.814336 GAGTACACCAGCCCAGAAAAAG 59.186 50.000 0.00 0.00 0.00 2.27
118 1317 2.441750 AGAGTACACCAGCCCAGAAAAA 59.558 45.455 0.00 0.00 0.00 1.94
119 1318 2.038557 GAGAGTACACCAGCCCAGAAAA 59.961 50.000 0.00 0.00 0.00 2.29
121 1320 1.267121 GAGAGTACACCAGCCCAGAA 58.733 55.000 0.00 0.00 0.00 3.02
122 1321 0.114364 TGAGAGTACACCAGCCCAGA 59.886 55.000 0.00 0.00 0.00 3.86
123 1322 0.534412 CTGAGAGTACACCAGCCCAG 59.466 60.000 0.00 0.00 0.00 4.45
124 1323 0.114364 TCTGAGAGTACACCAGCCCA 59.886 55.000 0.00 0.00 0.00 5.36
125 1324 1.267121 TTCTGAGAGTACACCAGCCC 58.733 55.000 0.00 0.00 0.00 5.19
126 1325 3.702045 ACTATTCTGAGAGTACACCAGCC 59.298 47.826 0.00 0.00 0.00 4.85
127 1326 4.993029 ACTATTCTGAGAGTACACCAGC 57.007 45.455 0.00 0.00 0.00 4.85
128 1327 6.925211 TCAAACTATTCTGAGAGTACACCAG 58.075 40.000 0.00 0.00 0.00 4.00
130 1329 7.159322 TCTCAAACTATTCTGAGAGTACACC 57.841 40.000 0.00 0.00 42.41 4.16
137 1336 4.382470 GCAGCCTCTCAAACTATTCTGAGA 60.382 45.833 2.10 2.10 44.49 3.27
138 1337 3.870419 GCAGCCTCTCAAACTATTCTGAG 59.130 47.826 0.00 0.00 40.42 3.35
140 1339 2.606725 CGCAGCCTCTCAAACTATTCTG 59.393 50.000 0.00 0.00 0.00 3.02
141 1340 2.234908 ACGCAGCCTCTCAAACTATTCT 59.765 45.455 0.00 0.00 0.00 2.40
143 1342 2.234908 AGACGCAGCCTCTCAAACTATT 59.765 45.455 0.00 0.00 0.00 1.73
144 1343 1.827969 AGACGCAGCCTCTCAAACTAT 59.172 47.619 0.00 0.00 0.00 2.12
145 1344 1.257743 AGACGCAGCCTCTCAAACTA 58.742 50.000 0.00 0.00 0.00 2.24
146 1345 0.394565 AAGACGCAGCCTCTCAAACT 59.605 50.000 0.00 0.00 0.00 2.66
148 1347 1.230635 GCAAGACGCAGCCTCTCAAA 61.231 55.000 0.00 0.00 41.79 2.69
149 1348 1.669115 GCAAGACGCAGCCTCTCAA 60.669 57.895 0.00 0.00 41.79 3.02
150 1349 2.047844 GCAAGACGCAGCCTCTCA 60.048 61.111 0.00 0.00 41.79 3.27
151 1350 3.184683 CGCAAGACGCAGCCTCTC 61.185 66.667 0.00 0.00 42.60 3.20
161 1360 0.099436 GGGCATCATTCACGCAAGAC 59.901 55.000 0.00 0.00 43.62 3.01
162 1361 0.322366 TGGGCATCATTCACGCAAGA 60.322 50.000 0.00 0.00 43.62 3.02
167 1366 1.725665 CAGCTGGGCATCATTCACG 59.274 57.895 5.57 0.00 0.00 4.35
170 1369 0.822164 AAAGCAGCTGGGCATCATTC 59.178 50.000 17.12 0.00 35.83 2.67
171 1370 1.066430 CAAAAGCAGCTGGGCATCATT 60.066 47.619 17.12 0.00 35.83 2.57
172 1371 0.535335 CAAAAGCAGCTGGGCATCAT 59.465 50.000 17.12 0.00 35.83 2.45
173 1372 0.828762 ACAAAAGCAGCTGGGCATCA 60.829 50.000 17.12 0.00 35.83 3.07
174 1373 1.176527 TACAAAAGCAGCTGGGCATC 58.823 50.000 17.12 0.00 35.83 3.91
175 1374 1.631405 TTACAAAAGCAGCTGGGCAT 58.369 45.000 17.12 0.00 35.83 4.40
178 1377 4.037446 TGTTACTTTACAAAAGCAGCTGGG 59.963 41.667 17.12 0.00 0.00 4.45
179 1378 5.181690 TGTTACTTTACAAAAGCAGCTGG 57.818 39.130 17.12 0.00 0.00 4.85
180 1379 5.171337 CGTTGTTACTTTACAAAAGCAGCTG 59.829 40.000 10.11 10.11 39.54 4.24
181 1380 5.270853 CGTTGTTACTTTACAAAAGCAGCT 58.729 37.500 0.00 0.00 39.54 4.24
182 1381 4.085772 GCGTTGTTACTTTACAAAAGCAGC 60.086 41.667 0.00 0.00 40.54 5.25
183 1382 4.144051 CGCGTTGTTACTTTACAAAAGCAG 59.856 41.667 0.00 7.04 40.70 4.24
184 1383 4.029704 CGCGTTGTTACTTTACAAAAGCA 58.970 39.130 0.00 0.00 40.70 3.91
185 1384 4.273274 TCGCGTTGTTACTTTACAAAAGC 58.727 39.130 5.77 0.00 39.54 3.51
187 1386 5.715429 TCTCGCGTTGTTACTTTACAAAA 57.285 34.783 5.77 0.00 39.54 2.44
188 1387 5.387649 CGATCTCGCGTTGTTACTTTACAAA 60.388 40.000 5.77 0.00 39.54 2.83
189 1388 4.088923 CGATCTCGCGTTGTTACTTTACAA 59.911 41.667 5.77 0.00 35.75 2.41
190 1389 3.605056 CGATCTCGCGTTGTTACTTTACA 59.395 43.478 5.77 0.00 0.00 2.41
191 1390 3.848019 TCGATCTCGCGTTGTTACTTTAC 59.152 43.478 5.77 0.00 39.60 2.01
192 1391 4.082274 TCGATCTCGCGTTGTTACTTTA 57.918 40.909 5.77 0.00 39.60 1.85
193 1392 2.937591 TCGATCTCGCGTTGTTACTTT 58.062 42.857 5.77 0.00 39.60 2.66
194 1393 2.624316 TCGATCTCGCGTTGTTACTT 57.376 45.000 5.77 0.00 39.60 2.24
195 1394 2.624316 TTCGATCTCGCGTTGTTACT 57.376 45.000 5.77 0.00 39.60 2.24
196 1395 2.850060 TCATTCGATCTCGCGTTGTTAC 59.150 45.455 5.77 0.00 39.60 2.50
198 1397 1.990799 TCATTCGATCTCGCGTTGTT 58.009 45.000 5.77 0.00 39.60 2.83
199 1398 2.209838 ATCATTCGATCTCGCGTTGT 57.790 45.000 5.77 0.00 39.60 3.32
200 1399 2.791560 AGAATCATTCGATCTCGCGTTG 59.208 45.455 5.77 0.00 39.60 4.10
203 1402 4.677378 AGTTTAGAATCATTCGATCTCGCG 59.323 41.667 0.00 0.00 39.60 5.87
204 1403 6.350974 CAAGTTTAGAATCATTCGATCTCGC 58.649 40.000 0.00 0.00 39.60 5.03
205 1404 6.199908 AGCAAGTTTAGAATCATTCGATCTCG 59.800 38.462 0.00 0.00 41.45 4.04
206 1405 7.343691 CAGCAAGTTTAGAATCATTCGATCTC 58.656 38.462 0.00 0.00 34.02 2.75
207 1406 6.238320 GCAGCAAGTTTAGAATCATTCGATCT 60.238 38.462 0.00 0.00 34.02 2.75
208 1407 5.906285 GCAGCAAGTTTAGAATCATTCGATC 59.094 40.000 0.00 0.00 34.02 3.69
211 1410 4.024438 CGCAGCAAGTTTAGAATCATTCG 58.976 43.478 0.00 0.00 34.02 3.34
212 1411 4.346129 CCGCAGCAAGTTTAGAATCATTC 58.654 43.478 0.00 0.00 0.00 2.67
213 1412 3.428045 GCCGCAGCAAGTTTAGAATCATT 60.428 43.478 0.00 0.00 39.53 2.57
215 1414 1.468520 GCCGCAGCAAGTTTAGAATCA 59.531 47.619 0.00 0.00 39.53 2.57
216 1415 1.740025 AGCCGCAGCAAGTTTAGAATC 59.260 47.619 0.00 0.00 43.56 2.52
217 1416 1.470098 CAGCCGCAGCAAGTTTAGAAT 59.530 47.619 0.00 0.00 43.56 2.40
218 1417 0.874390 CAGCCGCAGCAAGTTTAGAA 59.126 50.000 0.00 0.00 43.56 2.10
219 1418 1.577328 GCAGCCGCAGCAAGTTTAGA 61.577 55.000 2.39 0.00 43.56 2.10
220 1419 1.154150 GCAGCCGCAGCAAGTTTAG 60.154 57.895 2.39 0.00 43.56 1.85
221 1420 2.953821 GCAGCCGCAGCAAGTTTA 59.046 55.556 2.39 0.00 43.56 2.01
225 1424 3.829272 AAAACGCAGCCGCAGCAAG 62.829 57.895 8.60 0.00 43.56 4.01
228 1427 4.629115 ACAAAACGCAGCCGCAGC 62.629 61.111 0.00 0.00 38.40 5.25
229 1428 1.588667 AAACAAAACGCAGCCGCAG 60.589 52.632 0.00 0.00 38.40 5.18
230 1429 1.875813 CAAACAAAACGCAGCCGCA 60.876 52.632 0.00 0.00 38.40 5.69
231 1430 1.807242 GACAAACAAAACGCAGCCGC 61.807 55.000 0.00 0.00 38.22 6.53
232 1431 0.524392 TGACAAACAAAACGCAGCCG 60.524 50.000 0.00 0.00 41.14 5.52
233 1432 0.920664 GTGACAAACAAAACGCAGCC 59.079 50.000 0.00 0.00 0.00 4.85
234 1433 1.320259 GTGTGACAAACAAAACGCAGC 59.680 47.619 0.00 0.00 41.57 5.25
235 1434 2.862512 AGTGTGACAAACAAAACGCAG 58.137 42.857 0.00 0.00 41.57 5.18
236 1435 2.999507 AGTGTGACAAACAAAACGCA 57.000 40.000 0.00 0.00 41.57 5.24
237 1436 2.781646 GCTAGTGTGACAAACAAAACGC 59.218 45.455 0.00 0.00 41.57 4.84
238 1437 3.783943 GTGCTAGTGTGACAAACAAAACG 59.216 43.478 0.00 0.00 41.57 3.60
241 1440 3.348119 TGGTGCTAGTGTGACAAACAAA 58.652 40.909 0.00 0.00 41.57 2.83
242 1441 2.992593 TGGTGCTAGTGTGACAAACAA 58.007 42.857 0.00 0.00 41.57 2.83
244 1443 4.102649 GTTTTGGTGCTAGTGTGACAAAC 58.897 43.478 0.00 0.00 0.00 2.93
245 1444 3.129638 GGTTTTGGTGCTAGTGTGACAAA 59.870 43.478 0.00 0.00 0.00 2.83
247 1446 2.294074 GGTTTTGGTGCTAGTGTGACA 58.706 47.619 0.00 0.00 0.00 3.58
248 1447 1.607148 GGGTTTTGGTGCTAGTGTGAC 59.393 52.381 0.00 0.00 0.00 3.67
250 1449 1.686355 TGGGTTTTGGTGCTAGTGTG 58.314 50.000 0.00 0.00 0.00 3.82
251 1450 2.238521 CATGGGTTTTGGTGCTAGTGT 58.761 47.619 0.00 0.00 0.00 3.55
252 1451 1.545582 CCATGGGTTTTGGTGCTAGTG 59.454 52.381 2.85 0.00 0.00 2.74
253 1452 1.549950 CCCATGGGTTTTGGTGCTAGT 60.550 52.381 23.93 0.00 31.99 2.57
256 1455 4.213630 CCCATGGGTTTTGGTGCT 57.786 55.556 23.93 0.00 31.99 4.40
267 1466 3.149196 GGATATGTGCAGTAACCCATGG 58.851 50.000 4.14 4.14 0.00 3.66
269 1468 2.703536 TCGGATATGTGCAGTAACCCAT 59.296 45.455 0.00 0.00 0.00 4.00
270 1469 2.112190 TCGGATATGTGCAGTAACCCA 58.888 47.619 0.00 0.00 0.00 4.51
271 1470 2.902705 TCGGATATGTGCAGTAACCC 57.097 50.000 0.00 0.00 0.00 4.11
272 1471 3.793559 ACTTCGGATATGTGCAGTAACC 58.206 45.455 0.00 0.00 0.00 2.85
278 1518 4.217550 TCATATCGACTTCGGATATGTGCA 59.782 41.667 16.84 0.00 38.87 4.57
279 1519 4.733850 TCATATCGACTTCGGATATGTGC 58.266 43.478 16.84 0.00 38.87 4.57
282 1522 5.230936 GCACATCATATCGACTTCGGATATG 59.769 44.000 13.10 13.10 38.99 1.78
284 1524 4.459337 AGCACATCATATCGACTTCGGATA 59.541 41.667 0.00 0.00 40.29 2.59
291 1531 2.560542 GAGGGAGCACATCATATCGACT 59.439 50.000 0.00 0.00 0.00 4.18
305 1545 0.252197 TTTTTAGAGGCCGAGGGAGC 59.748 55.000 0.00 0.00 0.00 4.70
334 1574 9.965824 ATATCGTTTGACTTCAGAAAACAAATT 57.034 25.926 13.81 7.92 34.23 1.82
336 1576 9.872757 GTATATCGTTTGACTTCAGAAAACAAA 57.127 29.630 9.15 9.15 34.23 2.83
337 1577 9.047371 TGTATATCGTTTGACTTCAGAAAACAA 57.953 29.630 0.00 0.00 34.23 2.83
339 1579 8.709646 ACTGTATATCGTTTGACTTCAGAAAAC 58.290 33.333 0.00 0.00 0.00 2.43
363 1607 9.944376 TTCTTAGCATATAAACTCAGTCAAACT 57.056 29.630 0.00 0.00 0.00 2.66
378 1622 9.289782 ACTCAGTCAAACTTTTTCTTAGCATAT 57.710 29.630 0.00 0.00 0.00 1.78
379 1623 8.677148 ACTCAGTCAAACTTTTTCTTAGCATA 57.323 30.769 0.00 0.00 0.00 3.14
381 1625 7.391148 AACTCAGTCAAACTTTTTCTTAGCA 57.609 32.000 0.00 0.00 0.00 3.49
382 1626 9.952188 ATAAACTCAGTCAAACTTTTTCTTAGC 57.048 29.630 0.00 0.00 0.00 3.09
478 1723 9.316730 CCATTAACAATTACAATCTGAAATGGG 57.683 33.333 0.00 0.00 35.65 4.00
480 1725 9.874205 ACCCATTAACAATTACAATCTGAAATG 57.126 29.630 0.00 0.00 0.00 2.32
553 1798 6.309251 GTCTCTCGAAAGAAGACCTACAATTG 59.691 42.308 3.24 3.24 39.82 2.32
572 1817 0.181824 ACTAGCTCCCTCCGTCTCTC 59.818 60.000 0.00 0.00 0.00 3.20
789 2034 4.201950 GCTGCGAATGATACCAATCTTGTT 60.202 41.667 0.00 0.00 32.93 2.83
916 2161 6.095160 TGCTGTGCACATATGTTATGAAATGA 59.905 34.615 22.00 0.00 31.71 2.57
943 2188 0.773644 AGGTGATGGTCAAGCTGGTT 59.226 50.000 0.00 0.00 0.00 3.67
948 2193 2.191128 AGACAAGGTGATGGTCAAGC 57.809 50.000 0.00 0.00 34.04 4.01
1107 2359 2.755655 CCGCTGGAAACTAGAGAGAGAA 59.244 50.000 0.00 0.00 0.00 2.87
1108 2360 2.370349 CCGCTGGAAACTAGAGAGAGA 58.630 52.381 0.00 0.00 0.00 3.10
1114 2366 0.246635 GACTGCCGCTGGAAACTAGA 59.753 55.000 0.00 0.00 0.00 2.43
1117 2369 2.032681 GGACTGCCGCTGGAAACT 59.967 61.111 2.06 0.00 0.00 2.66
1269 2526 1.864565 TCGTTGTGTGAGTGACATGG 58.135 50.000 0.00 0.00 36.78 3.66
1350 2615 2.915659 ACGTTGTCGGCCCTCTCA 60.916 61.111 0.00 0.00 41.85 3.27
1364 2629 0.667487 CTCGAACCACATGCTCACGT 60.667 55.000 0.00 0.00 0.00 4.49
1434 2699 3.315470 TCTTCATCTTCCGTATGACGAGG 59.685 47.826 0.00 0.00 46.05 4.63
1503 2768 4.143333 GCCGCGTCCTTGGAGCTA 62.143 66.667 4.92 0.00 0.00 3.32
1886 3155 4.549458 ACATAGCACAACAAATGTTCAGC 58.451 39.130 10.04 10.04 41.46 4.26
1940 3209 2.284405 GGGTGGGGAGTCCTTCGA 60.284 66.667 9.58 0.00 36.20 3.71
1941 3210 2.525284 TAGGGGTGGGGAGTCCTTCG 62.525 65.000 9.58 0.00 36.20 3.79
1943 3212 0.327576 CATAGGGGTGGGGAGTCCTT 60.328 60.000 9.58 0.00 36.20 3.36
1944 3213 1.318380 CATAGGGGTGGGGAGTCCT 59.682 63.158 9.58 0.00 36.20 3.85
1945 3214 1.004361 ACATAGGGGTGGGGAGTCC 59.996 63.158 0.00 0.00 0.00 3.85
2133 3425 2.503061 CCGACCTCTGCATCTGGG 59.497 66.667 0.00 0.00 0.00 4.45
2176 3468 9.937175 CGTGAATCCTCTCCTTATTTTATTTTC 57.063 33.333 0.00 0.00 0.00 2.29
2253 3546 3.060479 TCTATGGCTATTGAGGGTGGT 57.940 47.619 0.00 0.00 0.00 4.16
2258 3551 8.143193 GTGATATCTCATCTATGGCTATTGAGG 58.857 40.741 9.56 5.32 35.60 3.86
2303 3596 6.422776 AACATTCAAGCTACCATACTTTCG 57.577 37.500 0.00 0.00 0.00 3.46
2365 3658 3.947834 ACATTTCTGTCGATTGAATCCCC 59.052 43.478 0.00 0.00 0.00 4.81
2372 3665 5.740569 CCTTGCAATACATTTCTGTCGATTG 59.259 40.000 0.00 0.00 35.67 2.67
2373 3666 5.163622 CCCTTGCAATACATTTCTGTCGATT 60.164 40.000 0.00 0.00 36.79 3.34
2374 3667 4.336433 CCCTTGCAATACATTTCTGTCGAT 59.664 41.667 0.00 0.00 36.79 3.59
2375 3668 3.689161 CCCTTGCAATACATTTCTGTCGA 59.311 43.478 0.00 0.00 36.79 4.20
2376 3669 3.440173 ACCCTTGCAATACATTTCTGTCG 59.560 43.478 0.00 0.00 36.79 4.35
2377 3670 5.391312 AACCCTTGCAATACATTTCTGTC 57.609 39.130 0.00 0.00 36.79 3.51
2496 3789 8.879342 TGGTTATGTACTTTGGATTGTTTTTG 57.121 30.769 0.00 0.00 0.00 2.44
2506 3799 6.145371 GCAATGTGTTTGGTTATGTACTTTGG 59.855 38.462 0.00 0.00 35.75 3.28
2571 3864 1.669604 TTTCTACGTGCTGCACCAAA 58.330 45.000 25.61 16.00 0.00 3.28
2581 3874 2.027469 AGGGGCTAGGTTTTTCTACGTG 60.027 50.000 0.00 0.00 0.00 4.49
2587 3880 2.619849 GGTGGTAGGGGCTAGGTTTTTC 60.620 54.545 0.00 0.00 0.00 2.29
2606 3899 1.345422 TGGGAGGGCTATTGATCTGGT 60.345 52.381 0.00 0.00 0.00 4.00
2625 3918 1.063006 CAATGTCCGGCAGCGAATG 59.937 57.895 0.00 0.00 0.00 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.