Multiple sequence alignment - TraesCS5B01G204800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G204800 chr5B 100.000 4465 0 0 1 4465 373047634 373043170 0.000000e+00 8246.0
1 TraesCS5B01G204800 chr5B 98.077 52 1 0 3041 3092 386391958 386392009 1.710000e-14 91.6
2 TraesCS5B01G204800 chr5A 95.636 2200 82 8 626 2817 417051993 417049800 0.000000e+00 3518.0
3 TraesCS5B01G204800 chr5A 88.609 1387 70 31 3106 4465 417045913 417044588 0.000000e+00 1605.0
4 TraesCS5B01G204800 chr5A 97.561 123 3 0 2887 3009 417046034 417045912 1.260000e-50 211.0
5 TraesCS5B01G204800 chr5A 98.630 73 1 0 2816 2888 417049639 417049567 3.620000e-26 130.0
6 TraesCS5B01G204800 chr3B 91.555 2238 142 17 606 2825 585732057 585729849 0.000000e+00 3042.0
7 TraesCS5B01G204800 chr3B 92.785 596 40 2 3093 3687 585729611 585729018 0.000000e+00 859.0
8 TraesCS5B01G204800 chr3B 87.811 402 9 6 4069 4465 585728990 585728624 6.860000e-118 435.0
9 TraesCS5B01G204800 chr3B 87.500 72 6 3 3042 3111 704578470 704578400 3.700000e-11 80.5
10 TraesCS5B01G204800 chr5D 93.506 2048 107 17 533 2565 321904113 321902077 0.000000e+00 3022.0
11 TraesCS5B01G204800 chr5D 91.345 1398 72 21 3089 4465 321901420 321900051 0.000000e+00 1866.0
12 TraesCS5B01G204800 chr5D 87.405 262 30 2 2564 2825 321901915 321901657 9.390000e-77 298.0
13 TraesCS5B01G204800 chr4A 87.415 731 50 18 3549 4265 374661163 374661865 0.000000e+00 802.0
14 TraesCS5B01G204800 chr7A 87.853 708 51 16 3549 4249 3419067 3419746 0.000000e+00 798.0
15 TraesCS5B01G204800 chr7A 81.676 513 65 7 11 515 218025247 218025738 2.500000e-107 399.0
16 TraesCS5B01G204800 chrUn 88.309 556 34 13 3562 4110 82536779 82536248 4.870000e-179 638.0
17 TraesCS5B01G204800 chr2D 81.633 441 47 15 86 517 568307855 568308270 7.160000e-88 335.0
18 TraesCS5B01G204800 chr2D 92.424 66 4 1 3034 3099 440316076 440316012 4.760000e-15 93.5
19 TraesCS5B01G204800 chr2D 91.667 60 4 1 3034 3093 598951267 598951325 1.030000e-11 82.4
20 TraesCS5B01G204800 chr6D 89.270 233 24 1 86 317 242220179 242219947 1.570000e-74 291.0
21 TraesCS5B01G204800 chr6D 84.906 159 14 4 370 520 242219938 242219782 7.740000e-33 152.0
22 TraesCS5B01G204800 chr4D 92.537 67 4 1 3034 3100 68711399 68711464 1.320000e-15 95.3
23 TraesCS5B01G204800 chr2B 92.424 66 4 1 3034 3099 518041502 518041438 4.760000e-15 93.5
24 TraesCS5B01G204800 chr7B 98.077 52 1 0 3041 3092 226609184 226609235 1.710000e-14 91.6
25 TraesCS5B01G204800 chr7B 85.484 62 9 0 61 122 533383859 533383798 1.040000e-06 65.8
26 TraesCS5B01G204800 chr1B 94.737 57 3 0 3043 3099 263552372 263552316 6.150000e-14 89.8
27 TraesCS5B01G204800 chr1A 94.737 57 3 0 3043 3099 221699809 221699753 6.150000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G204800 chr5B 373043170 373047634 4464 True 8246.000000 8246 100.000 1 4465 1 chr5B.!!$R1 4464
1 TraesCS5B01G204800 chr5A 417044588 417051993 7405 True 1366.000000 3518 95.109 626 4465 4 chr5A.!!$R1 3839
2 TraesCS5B01G204800 chr3B 585728624 585732057 3433 True 1445.333333 3042 90.717 606 4465 3 chr3B.!!$R2 3859
3 TraesCS5B01G204800 chr5D 321900051 321904113 4062 True 1728.666667 3022 90.752 533 4465 3 chr5D.!!$R1 3932
4 TraesCS5B01G204800 chr4A 374661163 374661865 702 False 802.000000 802 87.415 3549 4265 1 chr4A.!!$F1 716
5 TraesCS5B01G204800 chr7A 3419067 3419746 679 False 798.000000 798 87.853 3549 4249 1 chr7A.!!$F1 700
6 TraesCS5B01G204800 chrUn 82536248 82536779 531 True 638.000000 638 88.309 3562 4110 1 chrUn.!!$R1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
512 513 0.035176 AACCGGTTTACGCCTTAGCA 59.965 50.0 15.86 0.0 42.52 3.49 F
523 524 0.105039 GCCTTAGCACTCGCCACTAT 59.895 55.0 0.00 0.0 39.83 2.12 F
574 575 0.322098 ACGACCATGCCCGATCAAAA 60.322 50.0 11.12 0.0 0.00 2.44 F
2140 2151 0.517316 GCCTTCTTACGCCTGTGTTG 59.483 55.0 0.00 0.0 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1602 1613 0.533951 CCTTTGGCTTTGGCTGGATC 59.466 55.000 0.00 0.0 38.73 3.36 R
2290 2317 1.279840 GCGCGTCTTTTTGAGCAGT 59.720 52.632 8.43 0.0 0.00 4.40 R
2299 2326 1.499056 CTGCTTCATGCGCGTCTTT 59.501 52.632 8.43 0.0 46.63 2.52 R
3919 7889 0.527565 CCACCTTGTATGGCTTGTGC 59.472 55.000 0.00 0.0 38.76 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.734137 CATGCCATGGAGAGCTTGC 59.266 57.895 18.40 0.00 0.00 4.01
27 28 1.455217 ATGCCATGGAGAGCTTGCC 60.455 57.895 18.40 0.00 0.00 4.52
28 29 2.044650 GCCATGGAGAGCTTGCCA 60.045 61.111 18.40 10.47 38.78 4.92
29 30 1.455217 GCCATGGAGAGCTTGCCAT 60.455 57.895 18.40 13.75 45.47 4.40
30 31 1.453762 GCCATGGAGAGCTTGCCATC 61.454 60.000 18.40 5.38 42.81 3.51
31 32 1.164662 CCATGGAGAGCTTGCCATCG 61.165 60.000 15.96 8.27 42.81 3.84
32 33 1.147824 ATGGAGAGCTTGCCATCGG 59.852 57.895 13.75 0.00 40.83 4.18
58 59 3.923354 AGCTATAATGCAGCTCCCG 57.077 52.632 0.00 0.00 46.37 5.14
59 60 1.342074 AGCTATAATGCAGCTCCCGA 58.658 50.000 0.00 0.00 46.37 5.14
60 61 1.001406 AGCTATAATGCAGCTCCCGAC 59.999 52.381 0.00 0.00 46.37 4.79
61 62 1.702886 CTATAATGCAGCTCCCGACG 58.297 55.000 0.00 0.00 0.00 5.12
62 63 0.319555 TATAATGCAGCTCCCGACGC 60.320 55.000 0.00 0.00 0.00 5.19
63 64 2.032860 ATAATGCAGCTCCCGACGCT 62.033 55.000 0.00 0.00 38.49 5.07
99 100 4.783621 GTGGCTCCCATCGCTGCA 62.784 66.667 0.00 0.00 35.28 4.41
100 101 4.032452 TGGCTCCCATCGCTGCAA 62.032 61.111 0.00 0.00 0.00 4.08
101 102 2.517875 GGCTCCCATCGCTGCAAT 60.518 61.111 0.00 0.00 0.00 3.56
102 103 2.719979 GCTCCCATCGCTGCAATG 59.280 61.111 0.00 0.00 0.00 2.82
103 104 2.842256 GCTCCCATCGCTGCAATGG 61.842 63.158 12.71 12.71 42.84 3.16
104 105 1.153107 CTCCCATCGCTGCAATGGA 60.153 57.895 20.89 8.85 45.51 3.41
105 106 1.153107 TCCCATCGCTGCAATGGAG 60.153 57.895 20.89 10.87 45.51 3.86
106 107 1.452651 CCCATCGCTGCAATGGAGT 60.453 57.895 20.89 0.00 45.51 3.85
107 108 1.721664 CCCATCGCTGCAATGGAGTG 61.722 60.000 20.89 9.08 45.51 3.51
108 109 1.063649 CATCGCTGCAATGGAGTGC 59.936 57.895 10.52 0.00 45.15 4.40
109 110 1.077930 ATCGCTGCAATGGAGTGCT 60.078 52.632 10.52 0.00 45.17 4.40
110 111 1.094073 ATCGCTGCAATGGAGTGCTC 61.094 55.000 10.52 0.00 45.17 4.26
111 112 2.789917 GCTGCAATGGAGTGCTCG 59.210 61.111 3.24 0.00 45.17 5.03
112 113 2.789917 CTGCAATGGAGTGCTCGC 59.210 61.111 0.32 0.00 45.17 5.03
113 114 2.747460 TGCAATGGAGTGCTCGCC 60.747 61.111 1.11 1.11 45.17 5.54
114 115 3.869272 GCAATGGAGTGCTCGCCG 61.869 66.667 4.06 0.00 41.51 6.46
115 116 3.197790 CAATGGAGTGCTCGCCGG 61.198 66.667 0.00 0.00 36.30 6.13
116 117 3.706373 AATGGAGTGCTCGCCGGT 61.706 61.111 1.90 0.00 36.30 5.28
117 118 3.958147 AATGGAGTGCTCGCCGGTG 62.958 63.158 9.28 9.28 36.30 4.94
137 138 2.463592 CTCTCGAAGCTGCAATGCA 58.536 52.632 7.99 7.99 36.92 3.96
146 147 3.748623 TGCAATGCAGTGCTCGTT 58.251 50.000 35.48 5.93 45.17 3.85
147 148 1.283487 TGCAATGCAGTGCTCGTTG 59.717 52.632 35.48 17.90 45.17 4.10
148 149 1.283793 GCAATGCAGTGCTCGTTGT 59.716 52.632 30.37 0.00 41.51 3.32
149 150 0.318107 GCAATGCAGTGCTCGTTGTT 60.318 50.000 30.37 0.00 41.51 2.83
150 151 1.401530 CAATGCAGTGCTCGTTGTTG 58.598 50.000 17.60 7.87 0.00 3.33
151 152 0.318107 AATGCAGTGCTCGTTGTTGC 60.318 50.000 17.60 0.00 35.42 4.17
152 153 2.425773 GCAGTGCTCGTTGTTGCG 60.426 61.111 8.18 0.00 0.00 4.85
153 154 2.881266 GCAGTGCTCGTTGTTGCGA 61.881 57.895 8.18 0.00 39.22 5.10
154 155 1.862123 CAGTGCTCGTTGTTGCGAT 59.138 52.632 0.00 0.00 40.29 4.58
155 156 0.451628 CAGTGCTCGTTGTTGCGATG 60.452 55.000 0.00 0.00 40.29 3.84
156 157 1.154413 GTGCTCGTTGTTGCGATGG 60.154 57.895 0.00 0.00 40.29 3.51
157 158 1.301322 TGCTCGTTGTTGCGATGGA 60.301 52.632 0.00 0.00 40.29 3.41
158 159 1.291184 TGCTCGTTGTTGCGATGGAG 61.291 55.000 0.00 0.00 40.29 3.86
159 160 1.014044 GCTCGTTGTTGCGATGGAGA 61.014 55.000 0.00 0.00 40.29 3.71
160 161 1.645034 CTCGTTGTTGCGATGGAGAT 58.355 50.000 0.00 0.00 40.29 2.75
161 162 1.325640 CTCGTTGTTGCGATGGAGATG 59.674 52.381 0.00 0.00 40.29 2.90
162 163 0.247814 CGTTGTTGCGATGGAGATGC 60.248 55.000 0.00 0.00 0.00 3.91
163 164 1.089920 GTTGTTGCGATGGAGATGCT 58.910 50.000 0.00 0.00 0.00 3.79
164 165 1.063174 GTTGTTGCGATGGAGATGCTC 59.937 52.381 0.00 0.00 0.00 4.26
165 166 0.807275 TGTTGCGATGGAGATGCTCG 60.807 55.000 0.00 0.00 35.57 5.03
166 167 0.807667 GTTGCGATGGAGATGCTCGT 60.808 55.000 0.00 0.00 34.96 4.18
167 168 0.528466 TTGCGATGGAGATGCTCGTC 60.528 55.000 0.00 0.00 34.96 4.20
168 169 2.013483 GCGATGGAGATGCTCGTCG 61.013 63.158 13.11 13.11 40.01 5.12
169 170 1.371022 CGATGGAGATGCTCGTCGG 60.371 63.158 10.85 0.00 36.44 4.79
170 171 1.663074 GATGGAGATGCTCGTCGGC 60.663 63.158 0.00 0.00 0.00 5.54
171 172 3.490793 ATGGAGATGCTCGTCGGCG 62.491 63.158 1.15 1.15 39.92 6.46
172 173 4.933064 GGAGATGCTCGTCGGCGG 62.933 72.222 10.62 0.65 38.89 6.13
173 174 4.194720 GAGATGCTCGTCGGCGGT 62.195 66.667 10.62 0.00 38.89 5.68
174 175 4.498520 AGATGCTCGTCGGCGGTG 62.499 66.667 10.62 4.01 38.89 4.94
191 192 4.783621 GCCCTGGTGCTGCGATGA 62.784 66.667 0.00 0.00 0.00 2.92
192 193 2.046023 CCCTGGTGCTGCGATGAA 60.046 61.111 0.00 0.00 0.00 2.57
193 194 2.110967 CCCTGGTGCTGCGATGAAG 61.111 63.158 0.00 0.00 0.00 3.02
194 195 1.376424 CCTGGTGCTGCGATGAAGT 60.376 57.895 0.00 0.00 0.00 3.01
195 196 1.642037 CCTGGTGCTGCGATGAAGTG 61.642 60.000 0.00 0.00 0.00 3.16
196 197 2.249557 CTGGTGCTGCGATGAAGTGC 62.250 60.000 0.00 0.00 0.00 4.40
197 198 2.482374 GTGCTGCGATGAAGTGCC 59.518 61.111 0.00 0.00 0.00 5.01
198 199 2.032376 TGCTGCGATGAAGTGCCA 59.968 55.556 0.00 0.00 0.00 4.92
199 200 2.036571 TGCTGCGATGAAGTGCCAG 61.037 57.895 0.00 0.00 0.00 4.85
200 201 2.758089 GCTGCGATGAAGTGCCAGG 61.758 63.158 0.00 0.00 0.00 4.45
201 202 2.747460 TGCGATGAAGTGCCAGGC 60.747 61.111 3.66 3.66 0.00 4.85
202 203 2.747460 GCGATGAAGTGCCAGGCA 60.747 61.111 11.22 11.22 35.60 4.75
203 204 2.334946 GCGATGAAGTGCCAGGCAA 61.335 57.895 18.28 0.00 41.47 4.52
204 205 1.503542 CGATGAAGTGCCAGGCAAC 59.496 57.895 18.28 10.87 41.47 4.17
205 206 1.503542 GATGAAGTGCCAGGCAACG 59.496 57.895 18.28 0.00 41.47 4.10
206 207 1.228245 ATGAAGTGCCAGGCAACGT 60.228 52.632 18.28 8.96 41.47 3.99
207 208 0.823356 ATGAAGTGCCAGGCAACGTT 60.823 50.000 18.28 10.35 41.47 3.99
208 209 1.034838 TGAAGTGCCAGGCAACGTTT 61.035 50.000 18.28 8.59 41.47 3.60
209 210 0.102300 GAAGTGCCAGGCAACGTTTT 59.898 50.000 18.28 5.90 41.47 2.43
210 211 0.534873 AAGTGCCAGGCAACGTTTTT 59.465 45.000 18.28 1.21 41.47 1.94
211 212 0.102300 AGTGCCAGGCAACGTTTTTC 59.898 50.000 18.28 0.08 41.47 2.29
212 213 0.179124 GTGCCAGGCAACGTTTTTCA 60.179 50.000 18.28 0.00 41.47 2.69
213 214 0.749649 TGCCAGGCAACGTTTTTCAT 59.250 45.000 13.33 0.00 46.39 2.57
214 215 1.139163 GCCAGGCAACGTTTTTCATG 58.861 50.000 6.55 0.00 46.39 3.07
215 216 1.782044 CCAGGCAACGTTTTTCATGG 58.218 50.000 0.00 4.64 46.39 3.66
216 217 1.068434 CCAGGCAACGTTTTTCATGGT 59.932 47.619 14.07 0.00 46.39 3.55
217 218 2.126467 CAGGCAACGTTTTTCATGGTG 58.874 47.619 0.00 0.00 46.39 4.17
218 219 1.754226 AGGCAACGTTTTTCATGGTGT 59.246 42.857 0.00 0.00 46.39 4.16
219 220 2.167487 AGGCAACGTTTTTCATGGTGTT 59.833 40.909 0.00 0.00 46.39 3.32
220 221 2.283884 GGCAACGTTTTTCATGGTGTTG 59.716 45.455 0.00 1.12 39.61 3.33
221 222 2.926838 GCAACGTTTTTCATGGTGTTGT 59.073 40.909 0.00 0.00 39.02 3.32
222 223 3.241932 GCAACGTTTTTCATGGTGTTGTG 60.242 43.478 0.00 0.00 39.02 3.33
223 224 4.169508 CAACGTTTTTCATGGTGTTGTGA 58.830 39.130 0.00 0.00 33.78 3.58
224 225 4.647424 ACGTTTTTCATGGTGTTGTGAT 57.353 36.364 0.00 0.00 0.00 3.06
225 226 4.358851 ACGTTTTTCATGGTGTTGTGATG 58.641 39.130 0.00 0.00 0.00 3.07
226 227 3.182173 CGTTTTTCATGGTGTTGTGATGC 59.818 43.478 0.00 0.00 0.00 3.91
227 228 4.118410 GTTTTTCATGGTGTTGTGATGCA 58.882 39.130 0.00 0.00 0.00 3.96
228 229 3.646611 TTTCATGGTGTTGTGATGCAG 57.353 42.857 0.00 0.00 0.00 4.41
229 230 0.883153 TCATGGTGTTGTGATGCAGC 59.117 50.000 0.00 0.00 0.00 5.25
230 231 0.455464 CATGGTGTTGTGATGCAGCG 60.455 55.000 0.00 0.00 36.05 5.18
231 232 2.126734 GGTGTTGTGATGCAGCGC 60.127 61.111 8.93 8.93 37.96 5.92
232 233 2.126734 GTGTTGTGATGCAGCGCC 60.127 61.111 13.74 0.00 33.52 6.53
233 234 2.281692 TGTTGTGATGCAGCGCCT 60.282 55.556 13.74 0.00 0.00 5.52
234 235 1.898094 TGTTGTGATGCAGCGCCTT 60.898 52.632 13.74 0.00 0.00 4.35
235 236 1.443194 GTTGTGATGCAGCGCCTTG 60.443 57.895 13.74 0.00 0.00 3.61
236 237 3.271706 TTGTGATGCAGCGCCTTGC 62.272 57.895 13.74 14.21 46.98 4.01
276 277 3.893763 CGGCCCGTTGCAACACAA 61.894 61.111 28.01 0.00 43.89 3.33
277 278 2.027460 GGCCCGTTGCAACACAAG 59.973 61.111 28.01 14.27 43.89 3.16
278 279 2.027460 GCCCGTTGCAACACAAGG 59.973 61.111 28.01 21.62 42.52 3.61
281 282 3.834726 CGTTGCAACACAAGGGGA 58.165 55.556 28.01 0.00 39.50 4.81
282 283 2.340427 CGTTGCAACACAAGGGGAT 58.660 52.632 28.01 0.00 39.50 3.85
283 284 0.039256 CGTTGCAACACAAGGGGATG 60.039 55.000 28.01 4.98 39.50 3.51
284 285 0.318120 GTTGCAACACAAGGGGATGG 59.682 55.000 24.52 0.00 39.50 3.51
285 286 0.831288 TTGCAACACAAGGGGATGGG 60.831 55.000 0.00 0.00 33.24 4.00
286 287 1.076549 GCAACACAAGGGGATGGGA 59.923 57.895 0.00 0.00 0.00 4.37
287 288 0.324645 GCAACACAAGGGGATGGGAT 60.325 55.000 0.00 0.00 0.00 3.85
288 289 1.477553 CAACACAAGGGGATGGGATG 58.522 55.000 0.00 0.00 0.00 3.51
289 290 0.324645 AACACAAGGGGATGGGATGC 60.325 55.000 0.00 0.00 0.00 3.91
290 291 1.307309 CACAAGGGGATGGGATGCA 59.693 57.895 0.00 0.00 0.00 3.96
291 292 0.105862 CACAAGGGGATGGGATGCAT 60.106 55.000 0.00 0.00 0.00 3.96
292 293 0.105862 ACAAGGGGATGGGATGCATG 60.106 55.000 2.46 0.00 0.00 4.06
293 294 0.105862 CAAGGGGATGGGATGCATGT 60.106 55.000 2.46 0.00 0.00 3.21
294 295 0.638292 AAGGGGATGGGATGCATGTT 59.362 50.000 2.46 0.00 0.00 2.71
295 296 0.638292 AGGGGATGGGATGCATGTTT 59.362 50.000 2.46 0.00 0.00 2.83
296 297 1.043022 GGGGATGGGATGCATGTTTC 58.957 55.000 2.46 0.00 0.00 2.78
297 298 1.412074 GGGGATGGGATGCATGTTTCT 60.412 52.381 2.46 0.00 0.00 2.52
298 299 1.959282 GGGATGGGATGCATGTTTCTC 59.041 52.381 2.46 0.00 0.00 2.87
299 300 2.423947 GGGATGGGATGCATGTTTCTCT 60.424 50.000 2.46 0.00 0.00 3.10
300 301 2.621998 GGATGGGATGCATGTTTCTCTG 59.378 50.000 2.46 0.00 0.00 3.35
301 302 1.466856 TGGGATGCATGTTTCTCTGC 58.533 50.000 2.46 0.00 38.87 4.26
305 306 3.024431 TGCATGTTTCTCTGCAGCA 57.976 47.368 9.47 0.33 43.11 4.41
306 307 1.541379 TGCATGTTTCTCTGCAGCAT 58.459 45.000 9.47 3.15 43.11 3.79
307 308 1.471287 TGCATGTTTCTCTGCAGCATC 59.529 47.619 9.47 2.07 43.11 3.91
308 309 1.471287 GCATGTTTCTCTGCAGCATCA 59.529 47.619 9.47 4.22 38.28 3.07
309 310 2.731341 GCATGTTTCTCTGCAGCATCAC 60.731 50.000 9.47 3.94 38.28 3.06
310 311 2.556144 TGTTTCTCTGCAGCATCACT 57.444 45.000 9.47 0.00 0.00 3.41
318 319 3.561213 CAGCATCACTGGCGAGCG 61.561 66.667 0.00 0.00 43.19 5.03
319 320 3.763356 AGCATCACTGGCGAGCGA 61.763 61.111 0.00 0.00 36.08 4.93
320 321 3.558411 GCATCACTGGCGAGCGAC 61.558 66.667 0.00 0.00 0.00 5.19
321 322 3.250323 CATCACTGGCGAGCGACG 61.250 66.667 0.00 0.00 45.66 5.12
322 323 3.440415 ATCACTGGCGAGCGACGA 61.440 61.111 0.00 0.00 45.77 4.20
334 335 2.427905 CGACGACGACCAGCGAAA 60.428 61.111 0.00 0.00 44.57 3.46
335 336 2.012414 CGACGACGACCAGCGAAAA 61.012 57.895 0.00 0.00 44.57 2.29
336 337 1.542272 CGACGACGACCAGCGAAAAA 61.542 55.000 0.00 0.00 44.57 1.94
337 338 0.788391 GACGACGACCAGCGAAAAAT 59.212 50.000 0.00 0.00 44.57 1.82
338 339 0.511221 ACGACGACCAGCGAAAAATG 59.489 50.000 0.00 0.00 44.57 2.32
339 340 0.511221 CGACGACCAGCGAAAAATGT 59.489 50.000 0.00 0.00 44.57 2.71
340 341 1.721489 CGACGACCAGCGAAAAATGTG 60.721 52.381 0.00 0.00 44.57 3.21
341 342 0.591170 ACGACCAGCGAAAAATGTGG 59.409 50.000 0.00 0.00 44.57 4.17
342 343 0.591170 CGACCAGCGAAAAATGTGGT 59.409 50.000 0.00 0.00 46.24 4.16
344 345 1.981256 ACCAGCGAAAAATGTGGTCT 58.019 45.000 0.00 0.00 39.11 3.85
345 346 3.134574 ACCAGCGAAAAATGTGGTCTA 57.865 42.857 0.00 0.00 39.11 2.59
346 347 3.686016 ACCAGCGAAAAATGTGGTCTAT 58.314 40.909 0.00 0.00 39.11 1.98
347 348 4.079253 ACCAGCGAAAAATGTGGTCTATT 58.921 39.130 0.00 0.00 39.11 1.73
348 349 4.522789 ACCAGCGAAAAATGTGGTCTATTT 59.477 37.500 0.00 0.00 39.11 1.40
349 350 5.010617 ACCAGCGAAAAATGTGGTCTATTTT 59.989 36.000 0.00 0.00 39.11 1.82
350 351 6.207810 ACCAGCGAAAAATGTGGTCTATTTTA 59.792 34.615 0.00 0.00 39.11 1.52
351 352 6.747280 CCAGCGAAAAATGTGGTCTATTTTAG 59.253 38.462 0.00 0.00 36.89 1.85
352 353 6.747280 CAGCGAAAAATGTGGTCTATTTTAGG 59.253 38.462 0.00 0.00 36.89 2.69
353 354 6.433093 AGCGAAAAATGTGGTCTATTTTAGGT 59.567 34.615 0.00 0.00 36.89 3.08
354 355 6.745907 GCGAAAAATGTGGTCTATTTTAGGTC 59.254 38.462 0.00 0.00 36.89 3.85
355 356 7.574217 GCGAAAAATGTGGTCTATTTTAGGTCA 60.574 37.037 0.00 0.00 36.89 4.02
356 357 8.293867 CGAAAAATGTGGTCTATTTTAGGTCAA 58.706 33.333 0.00 0.00 36.89 3.18
357 358 9.626045 GAAAAATGTGGTCTATTTTAGGTCAAG 57.374 33.333 0.00 0.00 36.89 3.02
358 359 6.759497 AATGTGGTCTATTTTAGGTCAAGC 57.241 37.500 0.00 0.00 0.00 4.01
359 360 5.235850 TGTGGTCTATTTTAGGTCAAGCA 57.764 39.130 0.00 0.00 0.00 3.91
360 361 5.245531 TGTGGTCTATTTTAGGTCAAGCAG 58.754 41.667 0.00 0.00 0.00 4.24
361 362 5.221843 TGTGGTCTATTTTAGGTCAAGCAGT 60.222 40.000 0.00 0.00 0.00 4.40
362 363 5.122396 GTGGTCTATTTTAGGTCAAGCAGTG 59.878 44.000 0.00 0.00 0.00 3.66
363 364 4.636206 GGTCTATTTTAGGTCAAGCAGTGG 59.364 45.833 0.00 0.00 0.00 4.00
364 365 4.095036 GTCTATTTTAGGTCAAGCAGTGGC 59.905 45.833 0.00 0.00 41.61 5.01
369 370 2.282040 GTCAAGCAGTGGCCAGCT 60.282 61.111 13.53 13.53 44.31 4.24
370 371 2.281970 TCAAGCAGTGGCCAGCTG 60.282 61.111 19.38 21.63 41.70 4.24
375 376 4.790962 CAGTGGCCAGCTGCGGAT 62.791 66.667 5.11 0.00 42.61 4.18
376 377 4.790962 AGTGGCCAGCTGCGGATG 62.791 66.667 5.11 3.08 42.61 3.51
378 379 4.349503 TGGCCAGCTGCGGATGTT 62.350 61.111 8.66 0.00 42.61 2.71
379 380 3.818787 GGCCAGCTGCGGATGTTG 61.819 66.667 8.66 0.00 42.61 3.33
380 381 2.747460 GCCAGCTGCGGATGTTGA 60.747 61.111 8.66 0.00 0.00 3.18
381 382 2.758089 GCCAGCTGCGGATGTTGAG 61.758 63.158 8.66 0.00 0.00 3.02
382 383 2.110967 CCAGCTGCGGATGTTGAGG 61.111 63.158 8.66 0.00 0.00 3.86
383 384 2.110967 CAGCTGCGGATGTTGAGGG 61.111 63.158 0.00 0.00 0.00 4.30
384 385 2.825836 GCTGCGGATGTTGAGGGG 60.826 66.667 0.00 0.00 0.00 4.79
385 386 2.124570 CTGCGGATGTTGAGGGGG 60.125 66.667 0.00 0.00 0.00 5.40
386 387 2.609299 TGCGGATGTTGAGGGGGA 60.609 61.111 0.00 0.00 0.00 4.81
387 388 1.987807 CTGCGGATGTTGAGGGGGAT 61.988 60.000 0.00 0.00 0.00 3.85
388 389 1.526917 GCGGATGTTGAGGGGGATG 60.527 63.158 0.00 0.00 0.00 3.51
389 390 1.983119 GCGGATGTTGAGGGGGATGA 61.983 60.000 0.00 0.00 0.00 2.92
390 391 0.546122 CGGATGTTGAGGGGGATGAA 59.454 55.000 0.00 0.00 0.00 2.57
391 392 1.143684 CGGATGTTGAGGGGGATGAAT 59.856 52.381 0.00 0.00 0.00 2.57
392 393 2.811873 CGGATGTTGAGGGGGATGAATC 60.812 54.545 0.00 0.00 0.00 2.52
393 394 2.489802 GGATGTTGAGGGGGATGAATCC 60.490 54.545 0.26 0.26 46.41 3.01
401 402 4.147701 GGATGAATCCACTGCGGG 57.852 61.111 4.38 0.00 46.38 6.13
402 403 1.526887 GGATGAATCCACTGCGGGA 59.473 57.895 4.38 0.00 46.38 5.14
403 404 0.533755 GGATGAATCCACTGCGGGAG 60.534 60.000 4.38 0.00 46.38 4.30
404 405 0.179000 GATGAATCCACTGCGGGAGT 59.821 55.000 0.00 0.00 41.08 3.85
410 411 3.190849 CACTGCGGGAGTGCGATG 61.191 66.667 16.75 0.00 45.72 3.84
415 416 4.812476 CGGGAGTGCGATGCGGAA 62.812 66.667 0.00 0.00 0.00 4.30
416 417 2.203070 GGGAGTGCGATGCGGAAT 60.203 61.111 0.00 0.00 0.00 3.01
417 418 1.819632 GGGAGTGCGATGCGGAATT 60.820 57.895 0.00 0.00 0.00 2.17
418 419 1.643832 GGAGTGCGATGCGGAATTC 59.356 57.895 0.00 0.00 0.00 2.17
419 420 1.273887 GAGTGCGATGCGGAATTCG 59.726 57.895 0.00 0.00 42.76 3.34
420 421 2.094126 GAGTGCGATGCGGAATTCGG 62.094 60.000 8.57 8.57 39.69 4.30
421 422 3.572539 TGCGATGCGGAATTCGGC 61.573 61.111 26.19 26.19 41.78 5.54
422 423 4.649954 GCGATGCGGAATTCGGCG 62.650 66.667 26.74 16.81 43.96 6.46
423 424 2.959599 CGATGCGGAATTCGGCGA 60.960 61.111 26.74 18.43 43.96 5.54
424 425 2.931386 GATGCGGAATTCGGCGAG 59.069 61.111 26.74 0.00 43.96 5.03
425 426 2.588877 ATGCGGAATTCGGCGAGG 60.589 61.111 26.74 0.00 43.96 4.63
447 448 3.240203 ACGCGACGTTTGTGATGG 58.760 55.556 15.93 0.00 36.35 3.51
448 449 2.314647 ACGCGACGTTTGTGATGGG 61.315 57.895 15.93 0.00 36.35 4.00
449 450 2.867472 GCGACGTTTGTGATGGGG 59.133 61.111 0.00 0.00 0.00 4.96
450 451 2.867472 CGACGTTTGTGATGGGGC 59.133 61.111 0.00 0.00 0.00 5.80
451 452 2.867472 GACGTTTGTGATGGGGCG 59.133 61.111 0.00 0.00 0.00 6.13
452 453 3.322706 GACGTTTGTGATGGGGCGC 62.323 63.158 0.00 0.00 0.00 6.53
453 454 3.361158 CGTTTGTGATGGGGCGCA 61.361 61.111 10.83 6.74 0.00 6.09
454 455 2.699768 CGTTTGTGATGGGGCGCAT 61.700 57.895 17.70 17.70 0.00 4.73
455 456 1.139520 GTTTGTGATGGGGCGCATC 59.860 57.895 31.00 31.00 0.00 3.91
456 457 1.001020 TTTGTGATGGGGCGCATCT 60.001 52.632 34.87 11.48 0.00 2.90
457 458 0.254462 TTTGTGATGGGGCGCATCTA 59.746 50.000 34.87 24.60 0.00 1.98
458 459 0.254462 TTGTGATGGGGCGCATCTAA 59.746 50.000 34.87 27.67 0.00 2.10
459 460 0.463654 TGTGATGGGGCGCATCTAAC 60.464 55.000 34.87 27.70 0.00 2.34
460 461 1.227527 TGATGGGGCGCATCTAACG 60.228 57.895 34.87 0.00 0.00 3.18
461 462 1.961277 GATGGGGCGCATCTAACGG 60.961 63.158 30.57 0.00 0.00 4.44
462 463 2.660258 GATGGGGCGCATCTAACGGT 62.660 60.000 30.57 3.53 0.00 4.83
463 464 2.588034 GGGGCGCATCTAACGGTC 60.588 66.667 10.83 0.00 0.00 4.79
464 465 2.185867 GGGCGCATCTAACGGTCA 59.814 61.111 10.83 0.00 0.00 4.02
465 466 1.227556 GGGCGCATCTAACGGTCAT 60.228 57.895 10.83 0.00 0.00 3.06
466 467 1.498865 GGGCGCATCTAACGGTCATG 61.499 60.000 10.83 0.00 0.00 3.07
467 468 1.498865 GGCGCATCTAACGGTCATGG 61.499 60.000 10.83 0.00 0.00 3.66
468 469 0.529773 GCGCATCTAACGGTCATGGA 60.530 55.000 0.30 0.00 0.00 3.41
469 470 1.491670 CGCATCTAACGGTCATGGAG 58.508 55.000 0.00 0.00 0.00 3.86
470 471 1.869754 CGCATCTAACGGTCATGGAGG 60.870 57.143 0.00 0.00 0.00 4.30
471 472 1.871080 CATCTAACGGTCATGGAGGC 58.129 55.000 0.00 0.00 0.00 4.70
472 473 0.389391 ATCTAACGGTCATGGAGGCG 59.611 55.000 0.00 0.00 0.00 5.52
473 474 0.681887 TCTAACGGTCATGGAGGCGA 60.682 55.000 0.00 0.00 0.00 5.54
474 475 0.527817 CTAACGGTCATGGAGGCGAC 60.528 60.000 0.00 0.00 0.00 5.19
476 477 1.827399 AACGGTCATGGAGGCGACTT 61.827 55.000 0.00 0.00 44.43 3.01
477 478 0.968901 ACGGTCATGGAGGCGACTTA 60.969 55.000 0.00 0.00 44.43 2.24
478 479 0.527817 CGGTCATGGAGGCGACTTAC 60.528 60.000 0.00 0.00 44.43 2.34
479 480 0.535335 GGTCATGGAGGCGACTTACA 59.465 55.000 0.00 0.00 44.43 2.41
480 481 1.139058 GGTCATGGAGGCGACTTACAT 59.861 52.381 0.00 0.00 44.43 2.29
481 482 2.420129 GGTCATGGAGGCGACTTACATT 60.420 50.000 6.67 0.00 44.43 2.71
482 483 3.270877 GTCATGGAGGCGACTTACATTT 58.729 45.455 6.67 0.00 44.43 2.32
483 484 3.689649 GTCATGGAGGCGACTTACATTTT 59.310 43.478 6.67 0.00 44.43 1.82
484 485 3.938963 TCATGGAGGCGACTTACATTTTC 59.061 43.478 6.67 0.00 44.43 2.29
485 486 2.706890 TGGAGGCGACTTACATTTTCC 58.293 47.619 0.00 0.00 44.43 3.13
486 487 2.304761 TGGAGGCGACTTACATTTTCCT 59.695 45.455 0.00 0.00 44.43 3.36
487 488 2.937149 GGAGGCGACTTACATTTTCCTC 59.063 50.000 0.00 0.00 44.43 3.71
488 489 3.596214 GAGGCGACTTACATTTTCCTCA 58.404 45.455 0.00 0.00 44.43 3.86
489 490 4.000988 GAGGCGACTTACATTTTCCTCAA 58.999 43.478 0.00 0.00 44.43 3.02
490 491 4.394729 AGGCGACTTACATTTTCCTCAAA 58.605 39.130 0.00 0.00 37.44 2.69
491 492 5.010282 AGGCGACTTACATTTTCCTCAAAT 58.990 37.500 0.00 0.00 37.44 2.32
492 493 5.123979 AGGCGACTTACATTTTCCTCAAATC 59.876 40.000 0.00 0.00 37.44 2.17
493 494 5.106317 GGCGACTTACATTTTCCTCAAATCA 60.106 40.000 0.00 0.00 32.24 2.57
494 495 6.378582 GCGACTTACATTTTCCTCAAATCAA 58.621 36.000 0.00 0.00 32.24 2.57
495 496 6.305638 GCGACTTACATTTTCCTCAAATCAAC 59.694 38.462 0.00 0.00 32.24 3.18
496 497 6.801862 CGACTTACATTTTCCTCAAATCAACC 59.198 38.462 0.00 0.00 32.24 3.77
497 498 6.677913 ACTTACATTTTCCTCAAATCAACCG 58.322 36.000 0.00 0.00 32.24 4.44
498 499 4.519540 ACATTTTCCTCAAATCAACCGG 57.480 40.909 0.00 0.00 32.24 5.28
499 500 3.895041 ACATTTTCCTCAAATCAACCGGT 59.105 39.130 0.00 0.00 32.24 5.28
500 501 4.343814 ACATTTTCCTCAAATCAACCGGTT 59.656 37.500 15.86 15.86 32.24 4.44
501 502 5.163353 ACATTTTCCTCAAATCAACCGGTTT 60.163 36.000 19.55 0.01 32.24 3.27
502 503 6.041069 ACATTTTCCTCAAATCAACCGGTTTA 59.959 34.615 19.55 11.13 32.24 2.01
503 504 5.441709 TTTCCTCAAATCAACCGGTTTAC 57.558 39.130 19.55 0.00 0.00 2.01
504 505 3.068560 TCCTCAAATCAACCGGTTTACG 58.931 45.455 19.55 6.99 43.80 3.18
505 506 2.413634 CCTCAAATCAACCGGTTTACGC 60.414 50.000 19.55 0.00 42.52 4.42
506 507 1.536331 TCAAATCAACCGGTTTACGCC 59.464 47.619 19.55 0.00 42.52 5.68
507 508 1.538075 CAAATCAACCGGTTTACGCCT 59.462 47.619 19.55 0.00 42.52 5.52
508 509 1.900245 AATCAACCGGTTTACGCCTT 58.100 45.000 19.55 0.00 42.52 4.35
509 510 2.766345 ATCAACCGGTTTACGCCTTA 57.234 45.000 19.55 0.00 42.52 2.69
510 511 2.083167 TCAACCGGTTTACGCCTTAG 57.917 50.000 19.55 2.80 42.52 2.18
511 512 0.445043 CAACCGGTTTACGCCTTAGC 59.555 55.000 19.55 0.00 42.52 3.09
512 513 0.035176 AACCGGTTTACGCCTTAGCA 59.965 50.000 15.86 0.00 42.52 3.49
513 514 0.671472 ACCGGTTTACGCCTTAGCAC 60.671 55.000 0.00 0.00 42.52 4.40
514 515 0.390735 CCGGTTTACGCCTTAGCACT 60.391 55.000 0.00 0.00 42.52 4.40
515 516 0.997196 CGGTTTACGCCTTAGCACTC 59.003 55.000 0.00 0.00 39.83 3.51
516 517 0.997196 GGTTTACGCCTTAGCACTCG 59.003 55.000 0.00 0.00 39.83 4.18
517 518 0.369248 GTTTACGCCTTAGCACTCGC 59.631 55.000 0.00 0.00 39.83 5.03
518 519 0.738412 TTTACGCCTTAGCACTCGCC 60.738 55.000 0.00 0.00 39.83 5.54
519 520 1.879737 TTACGCCTTAGCACTCGCCA 61.880 55.000 0.00 0.00 39.83 5.69
520 521 2.552585 TACGCCTTAGCACTCGCCAC 62.553 60.000 0.00 0.00 39.83 5.01
521 522 2.266055 GCCTTAGCACTCGCCACT 59.734 61.111 0.00 0.00 39.83 4.00
522 523 1.515954 GCCTTAGCACTCGCCACTA 59.484 57.895 0.00 0.00 39.83 2.74
523 524 0.105039 GCCTTAGCACTCGCCACTAT 59.895 55.000 0.00 0.00 39.83 2.12
524 525 1.473434 GCCTTAGCACTCGCCACTATT 60.473 52.381 0.00 0.00 39.83 1.73
525 526 2.906354 CCTTAGCACTCGCCACTATTT 58.094 47.619 0.00 0.00 39.83 1.40
526 527 2.609459 CCTTAGCACTCGCCACTATTTG 59.391 50.000 0.00 0.00 39.83 2.32
527 528 3.521560 CTTAGCACTCGCCACTATTTGA 58.478 45.455 0.00 0.00 39.83 2.69
528 529 2.698855 AGCACTCGCCACTATTTGAT 57.301 45.000 0.00 0.00 39.83 2.57
529 530 2.283298 AGCACTCGCCACTATTTGATG 58.717 47.619 0.00 0.00 39.83 3.07
530 531 1.268234 GCACTCGCCACTATTTGATGC 60.268 52.381 0.00 0.00 0.00 3.91
531 532 1.331756 CACTCGCCACTATTTGATGCC 59.668 52.381 0.00 0.00 0.00 4.40
571 572 0.753848 TAGACGACCATGCCCGATCA 60.754 55.000 11.12 0.00 0.00 2.92
572 573 1.153449 GACGACCATGCCCGATCAA 60.153 57.895 11.12 0.00 0.00 2.57
574 575 0.322098 ACGACCATGCCCGATCAAAA 60.322 50.000 11.12 0.00 0.00 2.44
597 604 7.765695 AAAAAGTTCTATCTGCCAATTCTCA 57.234 32.000 0.00 0.00 0.00 3.27
598 605 7.765695 AAAAGTTCTATCTGCCAATTCTCAA 57.234 32.000 0.00 0.00 0.00 3.02
600 607 7.765695 AAGTTCTATCTGCCAATTCTCAAAA 57.234 32.000 0.00 0.00 0.00 2.44
601 608 7.765695 AGTTCTATCTGCCAATTCTCAAAAA 57.234 32.000 0.00 0.00 0.00 1.94
683 690 2.895372 GAGCCCACGTATTGCGGG 60.895 66.667 3.52 3.52 46.52 6.13
702 709 3.491598 AAGGGGTGCCACTTGTCCG 62.492 63.158 4.72 0.00 0.00 4.79
725 732 1.134530 CTTGACCGCGAGATCACGAC 61.135 60.000 17.02 6.80 29.29 4.34
815 823 1.523758 GTTGCCTTCACCGAATGACT 58.476 50.000 0.00 0.00 36.92 3.41
826 834 2.291670 ACCGAATGACTACACCTCCTCT 60.292 50.000 0.00 0.00 0.00 3.69
873 884 4.951963 CTCGCTCGCCGGATTCCC 62.952 72.222 5.05 0.00 37.59 3.97
918 929 4.760047 CTCGCCCCGTTCCACAGG 62.760 72.222 0.00 0.00 0.00 4.00
921 932 3.712907 GCCCCGTTCCACAGGCTA 61.713 66.667 0.00 0.00 42.34 3.93
922 933 2.584608 CCCCGTTCCACAGGCTAG 59.415 66.667 0.00 0.00 0.00 3.42
953 964 4.220602 GGCAAGCTCCTTCTTATTCCAAAA 59.779 41.667 0.00 0.00 0.00 2.44
956 967 6.875726 GCAAGCTCCTTCTTATTCCAAAATTT 59.124 34.615 0.00 0.00 0.00 1.82
1457 1468 4.715130 TACCGTGGCCCCTGCTCT 62.715 66.667 0.00 0.00 37.74 4.09
2140 2151 0.517316 GCCTTCTTACGCCTGTGTTG 59.483 55.000 0.00 0.00 0.00 3.33
2290 2317 1.209898 CGCGCAAAAATGGAGAGCA 59.790 52.632 8.75 0.00 0.00 4.26
2341 2368 4.922206 TCCAACCAAATGAATACAGCTCT 58.078 39.130 0.00 0.00 0.00 4.09
2407 2434 3.170791 ACTGTGCTTACATGGAGATCG 57.829 47.619 0.00 0.00 0.00 3.69
2430 2457 4.439057 GCTGATGTATAGGGACGTTTTCA 58.561 43.478 0.00 0.00 0.00 2.69
2516 2543 6.597280 GTGAGTTATTTTCCTGATCTCTGCTT 59.403 38.462 0.00 0.00 0.00 3.91
2744 2939 6.659745 TCAAAGCTGACTGGTTAGTACTAA 57.340 37.500 11.38 11.38 37.25 2.24
2745 2940 7.058023 TCAAAGCTGACTGGTTAGTACTAAA 57.942 36.000 16.82 2.01 37.25 1.85
2777 2974 5.116074 GCATTCAACAGATATTAATGCGTGC 59.884 40.000 0.00 0.00 41.89 5.34
2853 3247 6.266168 TGATAAGCATGTAAACTTGGTTGG 57.734 37.500 18.29 0.00 40.40 3.77
2888 3282 8.596781 AGGTCTGTAGTGACATAAGAGTAATT 57.403 34.615 0.00 0.00 38.61 1.40
2889 3283 9.036980 AGGTCTGTAGTGACATAAGAGTAATTT 57.963 33.333 0.00 0.00 38.61 1.82
2912 6840 2.164827 TGCTTCATGCCACAGCTAAATG 59.835 45.455 0.00 0.00 42.00 2.32
3011 6945 5.160641 CGTTTTGGTTTGGGACATCATTAG 58.839 41.667 0.00 0.00 39.30 1.73
3015 6949 6.739331 TTGGTTTGGGACATCATTAGTTTT 57.261 33.333 0.00 0.00 39.30 2.43
3016 6950 6.339587 TGGTTTGGGACATCATTAGTTTTC 57.660 37.500 0.00 0.00 39.30 2.29
3023 6957 9.974980 TTGGGACATCATTAGTTTTCTTTTAAC 57.025 29.630 0.00 0.00 39.30 2.01
3032 6966 9.769093 CATTAGTTTTCTTTTAACATACTCCCG 57.231 33.333 0.00 0.00 0.00 5.14
3035 6969 6.429078 AGTTTTCTTTTAACATACTCCCGTCC 59.571 38.462 0.00 0.00 0.00 4.79
3036 6970 4.476628 TCTTTTAACATACTCCCGTCCC 57.523 45.455 0.00 0.00 0.00 4.46
3037 6971 3.839490 TCTTTTAACATACTCCCGTCCCA 59.161 43.478 0.00 0.00 0.00 4.37
3038 6972 4.472108 TCTTTTAACATACTCCCGTCCCAT 59.528 41.667 0.00 0.00 0.00 4.00
3039 6973 5.662208 TCTTTTAACATACTCCCGTCCCATA 59.338 40.000 0.00 0.00 0.00 2.74
3040 6974 5.954153 TTTAACATACTCCCGTCCCATAA 57.046 39.130 0.00 0.00 0.00 1.90
3041 6975 6.503560 TTTAACATACTCCCGTCCCATAAT 57.496 37.500 0.00 0.00 0.00 1.28
3042 6976 7.615039 TTTAACATACTCCCGTCCCATAATA 57.385 36.000 0.00 0.00 0.00 0.98
3043 6977 5.479124 AACATACTCCCGTCCCATAATAC 57.521 43.478 0.00 0.00 0.00 1.89
3044 6978 4.748701 ACATACTCCCGTCCCATAATACT 58.251 43.478 0.00 0.00 0.00 2.12
3045 6979 4.771054 ACATACTCCCGTCCCATAATACTC 59.229 45.833 0.00 0.00 0.00 2.59
3046 6980 3.323774 ACTCCCGTCCCATAATACTCA 57.676 47.619 0.00 0.00 0.00 3.41
3047 6981 3.858135 ACTCCCGTCCCATAATACTCAT 58.142 45.455 0.00 0.00 0.00 2.90
3048 6982 5.006896 ACTCCCGTCCCATAATACTCATA 57.993 43.478 0.00 0.00 0.00 2.15
3049 6983 5.590818 ACTCCCGTCCCATAATACTCATAT 58.409 41.667 0.00 0.00 0.00 1.78
3050 6984 6.738635 ACTCCCGTCCCATAATACTCATATA 58.261 40.000 0.00 0.00 0.00 0.86
3051 6985 7.363031 ACTCCCGTCCCATAATACTCATATAT 58.637 38.462 0.00 0.00 0.00 0.86
3052 6986 7.844779 ACTCCCGTCCCATAATACTCATATATT 59.155 37.037 0.00 0.00 0.00 1.28
3053 6987 8.018537 TCCCGTCCCATAATACTCATATATTG 57.981 38.462 0.00 0.00 0.00 1.90
3054 6988 7.070696 TCCCGTCCCATAATACTCATATATTGG 59.929 40.741 0.00 0.00 0.00 3.16
3055 6989 7.070696 CCCGTCCCATAATACTCATATATTGGA 59.929 40.741 0.00 0.00 29.88 3.53
3056 6990 8.651389 CCGTCCCATAATACTCATATATTGGAT 58.349 37.037 0.00 0.00 29.88 3.41
3057 6991 9.481340 CGTCCCATAATACTCATATATTGGATG 57.519 37.037 0.00 0.00 29.88 3.51
3083 7017 9.798994 GTAGTAACATCTTATATTATGGGACGG 57.201 37.037 0.00 0.00 0.00 4.79
3084 7018 8.660295 AGTAACATCTTATATTATGGGACGGA 57.340 34.615 0.00 0.00 0.00 4.69
3085 7019 8.750298 AGTAACATCTTATATTATGGGACGGAG 58.250 37.037 0.00 0.00 0.00 4.63
3086 7020 6.546428 ACATCTTATATTATGGGACGGAGG 57.454 41.667 0.00 0.00 0.00 4.30
3087 7021 5.425539 ACATCTTATATTATGGGACGGAGGG 59.574 44.000 0.00 0.00 0.00 4.30
3088 7022 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
3089 7023 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
3090 7024 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
3091 7025 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
3092 7026 3.562108 ATTATGGGACGGAGGGAGTAT 57.438 47.619 0.00 0.00 0.00 2.12
3093 7027 4.687262 ATTATGGGACGGAGGGAGTATA 57.313 45.455 0.00 0.00 0.00 1.47
3094 7028 4.687262 TTATGGGACGGAGGGAGTATAT 57.313 45.455 0.00 0.00 0.00 0.86
3095 7029 2.304221 TGGGACGGAGGGAGTATATG 57.696 55.000 0.00 0.00 0.00 1.78
3096 7030 1.784593 TGGGACGGAGGGAGTATATGA 59.215 52.381 0.00 0.00 0.00 2.15
3097 7031 2.382305 TGGGACGGAGGGAGTATATGAT 59.618 50.000 0.00 0.00 0.00 2.45
3098 7032 3.594685 TGGGACGGAGGGAGTATATGATA 59.405 47.826 0.00 0.00 0.00 2.15
3099 7033 4.232122 TGGGACGGAGGGAGTATATGATAT 59.768 45.833 0.00 0.00 0.00 1.63
3100 7034 4.828387 GGGACGGAGGGAGTATATGATATC 59.172 50.000 0.00 0.00 0.00 1.63
3101 7035 5.446860 GGACGGAGGGAGTATATGATATCA 58.553 45.833 8.10 8.10 0.00 2.15
3102 7036 6.071984 GGACGGAGGGAGTATATGATATCAT 58.928 44.000 21.50 21.50 40.22 2.45
3180 7114 8.253810 TGATTCTTTCCAGACTGTACATTCTAG 58.746 37.037 14.69 8.64 0.00 2.43
3209 7143 8.658609 GCTAACCTACAAATGACGTGTTTATTA 58.341 33.333 0.00 0.00 0.00 0.98
3213 7147 9.391006 ACCTACAAATGACGTGTTTATTATGAT 57.609 29.630 0.00 0.00 0.00 2.45
3251 7187 6.804783 TCGTACTTCATGGTATTATACATGCG 59.195 38.462 4.67 5.52 43.11 4.73
3401 7337 5.129320 TCACAGGATTATATATGGCGCTGAT 59.871 40.000 7.64 2.09 0.00 2.90
3700 7636 3.009723 ACATTCAGAATAGTGCCAACCG 58.990 45.455 0.00 0.00 0.00 4.44
3789 7750 5.995282 TCAGTGGTGAAATAACTAAGTGGTG 59.005 40.000 0.00 0.00 0.00 4.17
3792 7753 6.485648 AGTGGTGAAATAACTAAGTGGTGAAC 59.514 38.462 0.00 0.00 0.00 3.18
3835 7799 7.044181 TGAGGAGTACAGATCAAAATGATGAC 58.956 38.462 0.00 0.00 37.20 3.06
3883 7852 6.266786 GGGGTAAATCCTCTGAAAAGTTTCAA 59.733 38.462 7.80 0.00 40.22 2.69
3898 7868 8.507524 AAAAGTTTCAAGTACAGAAGCTAACT 57.492 30.769 14.56 7.30 35.84 2.24
4362 8347 4.968766 TGCTTGCTGCTGCTGCCT 62.969 61.111 25.44 0.00 43.37 4.75
4371 8361 2.759114 CTGCTGCCTCCCCAAGAA 59.241 61.111 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.896133 CCATGGCATGGCAGCGTC 61.896 66.667 31.96 0.00 44.70 5.19
8 9 1.734137 GCAAGCTCTCCATGGCATG 59.266 57.895 20.56 20.56 0.00 4.06
9 10 1.455217 GGCAAGCTCTCCATGGCAT 60.455 57.895 6.96 0.00 39.25 4.40
10 11 2.044650 GGCAAGCTCTCCATGGCA 60.045 61.111 6.96 0.00 39.25 4.92
11 12 1.453762 GATGGCAAGCTCTCCATGGC 61.454 60.000 20.52 12.29 42.74 4.40
12 13 1.164662 CGATGGCAAGCTCTCCATGG 61.165 60.000 20.52 16.31 42.74 3.66
13 14 1.164662 CCGATGGCAAGCTCTCCATG 61.165 60.000 20.52 13.58 42.74 3.66
14 15 1.147824 CCGATGGCAAGCTCTCCAT 59.852 57.895 16.84 16.84 45.17 3.41
15 16 2.586245 CCGATGGCAAGCTCTCCA 59.414 61.111 9.06 9.06 36.70 3.86
41 42 1.433534 GTCGGGAGCTGCATTATAGC 58.566 55.000 7.79 0.00 41.43 2.97
42 43 1.702886 CGTCGGGAGCTGCATTATAG 58.297 55.000 7.79 0.00 0.00 1.31
43 44 0.319555 GCGTCGGGAGCTGCATTATA 60.320 55.000 7.79 0.00 0.00 0.98
44 45 1.595382 GCGTCGGGAGCTGCATTAT 60.595 57.895 7.79 0.00 0.00 1.28
45 46 2.202878 GCGTCGGGAGCTGCATTA 60.203 61.111 7.79 0.00 0.00 1.90
46 47 4.087892 AGCGTCGGGAGCTGCATT 62.088 61.111 7.79 0.00 44.22 3.56
82 83 4.783621 TGCAGCGATGGGAGCCAC 62.784 66.667 1.46 0.00 35.80 5.01
83 84 3.348554 ATTGCAGCGATGGGAGCCA 62.349 57.895 1.46 0.00 38.19 4.75
84 85 2.517875 ATTGCAGCGATGGGAGCC 60.518 61.111 1.46 0.00 34.64 4.70
85 86 2.719979 CATTGCAGCGATGGGAGC 59.280 61.111 14.35 0.00 0.00 4.70
86 87 1.153107 TCCATTGCAGCGATGGGAG 60.153 57.895 33.37 14.61 43.67 4.30
87 88 1.153107 CTCCATTGCAGCGATGGGA 60.153 57.895 33.37 21.70 43.67 4.37
88 89 1.452651 ACTCCATTGCAGCGATGGG 60.453 57.895 33.37 26.52 43.67 4.00
89 90 1.725665 CACTCCATTGCAGCGATGG 59.274 57.895 30.13 30.13 44.58 3.51
90 91 1.063649 GCACTCCATTGCAGCGATG 59.936 57.895 15.13 15.13 42.49 3.84
91 92 1.077930 AGCACTCCATTGCAGCGAT 60.078 52.632 0.00 0.00 45.62 4.58
92 93 1.742880 GAGCACTCCATTGCAGCGA 60.743 57.895 0.00 0.00 45.62 4.93
93 94 2.789917 GAGCACTCCATTGCAGCG 59.210 61.111 0.00 0.00 45.62 5.18
94 95 2.789917 CGAGCACTCCATTGCAGC 59.210 61.111 0.00 0.00 45.62 5.25
95 96 2.758089 GGCGAGCACTCCATTGCAG 61.758 63.158 0.00 0.00 45.62 4.41
96 97 2.747460 GGCGAGCACTCCATTGCA 60.747 61.111 0.00 0.00 45.62 4.08
97 98 3.869272 CGGCGAGCACTCCATTGC 61.869 66.667 0.00 0.00 43.34 3.56
98 99 3.197790 CCGGCGAGCACTCCATTG 61.198 66.667 9.30 0.00 0.00 2.82
99 100 3.706373 ACCGGCGAGCACTCCATT 61.706 61.111 9.30 0.00 0.00 3.16
100 101 4.457496 CACCGGCGAGCACTCCAT 62.457 66.667 9.30 0.00 0.00 3.41
119 120 2.463592 TGCATTGCAGCTTCGAGAG 58.536 52.632 7.38 0.00 33.32 3.20
120 121 4.699626 TGCATTGCAGCTTCGAGA 57.300 50.000 7.38 0.00 33.32 4.04
129 130 1.283487 CAACGAGCACTGCATTGCA 59.717 52.632 28.09 11.50 45.62 4.08
130 131 0.318107 AACAACGAGCACTGCATTGC 60.318 50.000 20.47 20.47 43.34 3.56
131 132 1.401530 CAACAACGAGCACTGCATTG 58.598 50.000 3.30 7.37 0.00 2.82
132 133 0.318107 GCAACAACGAGCACTGCATT 60.318 50.000 3.30 0.00 33.19 3.56
133 134 1.283793 GCAACAACGAGCACTGCAT 59.716 52.632 3.30 0.00 33.19 3.96
134 135 2.715005 GCAACAACGAGCACTGCA 59.285 55.556 3.30 0.00 33.19 4.41
135 136 2.175184 ATCGCAACAACGAGCACTGC 62.175 55.000 0.00 0.00 46.69 4.40
136 137 0.451628 CATCGCAACAACGAGCACTG 60.452 55.000 0.00 0.00 46.69 3.66
137 138 1.568612 CCATCGCAACAACGAGCACT 61.569 55.000 0.00 0.00 46.69 4.40
138 139 1.154413 CCATCGCAACAACGAGCAC 60.154 57.895 0.00 0.00 46.69 4.40
139 140 1.291184 CTCCATCGCAACAACGAGCA 61.291 55.000 0.00 0.00 46.69 4.26
140 141 1.014044 TCTCCATCGCAACAACGAGC 61.014 55.000 0.00 0.00 46.69 5.03
141 142 1.325640 CATCTCCATCGCAACAACGAG 59.674 52.381 0.00 0.00 46.69 4.18
143 144 0.247814 GCATCTCCATCGCAACAACG 60.248 55.000 0.00 0.00 0.00 4.10
144 145 1.063174 GAGCATCTCCATCGCAACAAC 59.937 52.381 0.00 0.00 0.00 3.32
145 146 1.372582 GAGCATCTCCATCGCAACAA 58.627 50.000 0.00 0.00 0.00 2.83
146 147 0.807275 CGAGCATCTCCATCGCAACA 60.807 55.000 0.00 0.00 0.00 3.33
147 148 0.807667 ACGAGCATCTCCATCGCAAC 60.808 55.000 0.00 0.00 40.02 4.17
148 149 0.528466 GACGAGCATCTCCATCGCAA 60.528 55.000 0.00 0.00 40.02 4.85
149 150 1.066422 GACGAGCATCTCCATCGCA 59.934 57.895 0.00 0.00 40.02 5.10
150 151 2.013483 CGACGAGCATCTCCATCGC 61.013 63.158 0.00 0.00 40.02 4.58
151 152 1.371022 CCGACGAGCATCTCCATCG 60.371 63.158 0.00 7.69 42.04 3.84
152 153 1.663074 GCCGACGAGCATCTCCATC 60.663 63.158 0.00 0.00 0.00 3.51
153 154 2.419198 GCCGACGAGCATCTCCAT 59.581 61.111 0.00 0.00 0.00 3.41
154 155 4.193334 CGCCGACGAGCATCTCCA 62.193 66.667 0.00 0.00 43.93 3.86
155 156 4.933064 CCGCCGACGAGCATCTCC 62.933 72.222 0.00 0.00 43.93 3.71
156 157 4.194720 ACCGCCGACGAGCATCTC 62.195 66.667 0.00 0.00 43.93 2.75
157 158 4.498520 CACCGCCGACGAGCATCT 62.499 66.667 0.00 0.00 43.93 2.90
174 175 4.783621 TCATCGCAGCACCAGGGC 62.784 66.667 0.00 0.00 0.00 5.19
175 176 2.046023 TTCATCGCAGCACCAGGG 60.046 61.111 0.00 0.00 0.00 4.45
176 177 1.376424 ACTTCATCGCAGCACCAGG 60.376 57.895 0.00 0.00 0.00 4.45
177 178 1.792301 CACTTCATCGCAGCACCAG 59.208 57.895 0.00 0.00 0.00 4.00
178 179 2.327343 GCACTTCATCGCAGCACCA 61.327 57.895 0.00 0.00 0.00 4.17
179 180 2.482374 GCACTTCATCGCAGCACC 59.518 61.111 0.00 0.00 0.00 5.01
180 181 2.249557 CTGGCACTTCATCGCAGCAC 62.250 60.000 0.00 0.00 0.00 4.40
181 182 2.032376 TGGCACTTCATCGCAGCA 59.968 55.556 0.00 0.00 0.00 4.41
182 183 2.758089 CCTGGCACTTCATCGCAGC 61.758 63.158 0.00 0.00 0.00 5.25
183 184 2.758089 GCCTGGCACTTCATCGCAG 61.758 63.158 15.17 0.00 0.00 5.18
184 185 2.747460 GCCTGGCACTTCATCGCA 60.747 61.111 15.17 0.00 0.00 5.10
185 186 2.334946 TTGCCTGGCACTTCATCGC 61.335 57.895 23.30 0.00 38.71 4.58
186 187 1.503542 GTTGCCTGGCACTTCATCG 59.496 57.895 23.30 0.00 38.71 3.84
187 188 1.237285 ACGTTGCCTGGCACTTCATC 61.237 55.000 23.30 6.95 38.71 2.92
188 189 0.823356 AACGTTGCCTGGCACTTCAT 60.823 50.000 23.30 4.01 38.71 2.57
189 190 1.034838 AAACGTTGCCTGGCACTTCA 61.035 50.000 23.30 3.22 38.71 3.02
190 191 0.102300 AAAACGTTGCCTGGCACTTC 59.898 50.000 23.30 13.66 38.71 3.01
191 192 0.534873 AAAAACGTTGCCTGGCACTT 59.465 45.000 23.30 10.19 38.71 3.16
192 193 0.102300 GAAAAACGTTGCCTGGCACT 59.898 50.000 23.30 3.62 38.71 4.40
193 194 0.179124 TGAAAAACGTTGCCTGGCAC 60.179 50.000 23.30 15.34 38.71 5.01
194 195 0.749649 ATGAAAAACGTTGCCTGGCA 59.250 45.000 19.30 19.30 36.47 4.92
195 196 1.139163 CATGAAAAACGTTGCCTGGC 58.861 50.000 12.87 12.87 0.00 4.85
196 197 1.068434 ACCATGAAAAACGTTGCCTGG 59.932 47.619 0.00 9.82 0.00 4.45
197 198 2.126467 CACCATGAAAAACGTTGCCTG 58.874 47.619 0.00 0.00 0.00 4.85
198 199 1.754226 ACACCATGAAAAACGTTGCCT 59.246 42.857 0.00 0.00 0.00 4.75
199 200 2.217429 ACACCATGAAAAACGTTGCC 57.783 45.000 0.00 0.00 0.00 4.52
200 201 2.926838 ACAACACCATGAAAAACGTTGC 59.073 40.909 0.00 0.00 37.77 4.17
201 202 4.169508 TCACAACACCATGAAAAACGTTG 58.830 39.130 0.00 0.00 39.61 4.10
202 203 4.442375 TCACAACACCATGAAAAACGTT 57.558 36.364 0.00 0.00 0.00 3.99
203 204 4.358851 CATCACAACACCATGAAAAACGT 58.641 39.130 0.00 0.00 0.00 3.99
204 205 3.182173 GCATCACAACACCATGAAAAACG 59.818 43.478 0.00 0.00 0.00 3.60
205 206 4.118410 TGCATCACAACACCATGAAAAAC 58.882 39.130 0.00 0.00 0.00 2.43
206 207 4.370049 CTGCATCACAACACCATGAAAAA 58.630 39.130 0.00 0.00 0.00 1.94
207 208 3.799574 GCTGCATCACAACACCATGAAAA 60.800 43.478 0.00 0.00 0.00 2.29
208 209 2.288334 GCTGCATCACAACACCATGAAA 60.288 45.455 0.00 0.00 0.00 2.69
209 210 1.270274 GCTGCATCACAACACCATGAA 59.730 47.619 0.00 0.00 0.00 2.57
210 211 0.883153 GCTGCATCACAACACCATGA 59.117 50.000 0.00 0.00 0.00 3.07
211 212 0.455464 CGCTGCATCACAACACCATG 60.455 55.000 0.00 0.00 0.00 3.66
212 213 1.878070 CGCTGCATCACAACACCAT 59.122 52.632 0.00 0.00 0.00 3.55
213 214 2.906939 GCGCTGCATCACAACACCA 61.907 57.895 0.00 0.00 0.00 4.17
214 215 2.126734 GCGCTGCATCACAACACC 60.127 61.111 0.00 0.00 0.00 4.16
215 216 2.126734 GGCGCTGCATCACAACAC 60.127 61.111 7.64 0.00 0.00 3.32
216 217 1.898094 AAGGCGCTGCATCACAACA 60.898 52.632 7.64 0.00 0.00 3.33
217 218 1.443194 CAAGGCGCTGCATCACAAC 60.443 57.895 7.64 0.00 0.00 3.32
218 219 2.956194 CAAGGCGCTGCATCACAA 59.044 55.556 7.64 0.00 0.00 3.33
219 220 3.740397 GCAAGGCGCTGCATCACA 61.740 61.111 15.97 0.00 42.17 3.58
220 221 4.487412 GGCAAGGCGCTGCATCAC 62.487 66.667 21.36 2.37 44.52 3.06
259 260 3.822403 CTTGTGTTGCAACGGGCCG 62.822 63.158 27.06 27.06 43.89 6.13
260 261 2.027460 CTTGTGTTGCAACGGGCC 59.973 61.111 23.79 12.28 43.89 5.80
261 262 2.027460 CCTTGTGTTGCAACGGGC 59.973 61.111 23.79 16.43 45.13 6.13
262 263 2.727544 CCCTTGTGTTGCAACGGG 59.272 61.111 23.79 22.42 38.35 5.28
263 264 1.178534 ATCCCCTTGTGTTGCAACGG 61.179 55.000 23.79 17.87 34.40 4.44
264 265 0.039256 CATCCCCTTGTGTTGCAACG 60.039 55.000 23.79 9.92 32.90 4.10
265 266 0.318120 CCATCCCCTTGTGTTGCAAC 59.682 55.000 22.83 22.83 32.90 4.17
266 267 0.831288 CCCATCCCCTTGTGTTGCAA 60.831 55.000 0.00 0.00 35.50 4.08
267 268 1.228831 CCCATCCCCTTGTGTTGCA 60.229 57.895 0.00 0.00 0.00 4.08
268 269 0.324645 ATCCCATCCCCTTGTGTTGC 60.325 55.000 0.00 0.00 0.00 4.17
269 270 1.477553 CATCCCATCCCCTTGTGTTG 58.522 55.000 0.00 0.00 0.00 3.33
270 271 0.324645 GCATCCCATCCCCTTGTGTT 60.325 55.000 0.00 0.00 0.00 3.32
271 272 1.307647 GCATCCCATCCCCTTGTGT 59.692 57.895 0.00 0.00 0.00 3.72
272 273 0.105862 ATGCATCCCATCCCCTTGTG 60.106 55.000 0.00 0.00 0.00 3.33
273 274 0.105862 CATGCATCCCATCCCCTTGT 60.106 55.000 0.00 0.00 29.71 3.16
274 275 0.105862 ACATGCATCCCATCCCCTTG 60.106 55.000 0.00 0.00 29.71 3.61
275 276 0.638292 AACATGCATCCCATCCCCTT 59.362 50.000 0.00 0.00 29.71 3.95
276 277 0.638292 AAACATGCATCCCATCCCCT 59.362 50.000 0.00 0.00 29.71 4.79
277 278 1.043022 GAAACATGCATCCCATCCCC 58.957 55.000 0.00 0.00 29.71 4.81
278 279 1.959282 GAGAAACATGCATCCCATCCC 59.041 52.381 0.00 0.00 29.71 3.85
279 280 2.621998 CAGAGAAACATGCATCCCATCC 59.378 50.000 0.00 0.00 29.71 3.51
280 281 2.034305 GCAGAGAAACATGCATCCCATC 59.966 50.000 0.00 0.00 42.11 3.51
281 282 2.029623 GCAGAGAAACATGCATCCCAT 58.970 47.619 0.00 0.00 42.11 4.00
282 283 1.272037 TGCAGAGAAACATGCATCCCA 60.272 47.619 0.00 0.00 46.97 4.37
283 284 1.466856 TGCAGAGAAACATGCATCCC 58.533 50.000 0.00 0.00 46.97 3.85
288 289 1.471287 TGATGCTGCAGAGAAACATGC 59.529 47.619 20.43 0.00 42.86 4.06
289 290 2.747989 AGTGATGCTGCAGAGAAACATG 59.252 45.455 20.43 0.00 0.00 3.21
290 291 2.747989 CAGTGATGCTGCAGAGAAACAT 59.252 45.455 20.43 10.88 38.52 2.71
291 292 2.148768 CAGTGATGCTGCAGAGAAACA 58.851 47.619 20.43 5.55 38.52 2.83
292 293 1.467734 CCAGTGATGCTGCAGAGAAAC 59.532 52.381 20.43 9.85 43.71 2.78
293 294 1.817357 CCAGTGATGCTGCAGAGAAA 58.183 50.000 20.43 0.00 43.71 2.52
294 295 0.675837 GCCAGTGATGCTGCAGAGAA 60.676 55.000 20.43 1.66 43.71 2.87
295 296 1.078637 GCCAGTGATGCTGCAGAGA 60.079 57.895 20.43 2.51 43.71 3.10
296 297 2.461945 CGCCAGTGATGCTGCAGAG 61.462 63.158 20.43 0.00 43.71 3.35
297 298 2.435410 CGCCAGTGATGCTGCAGA 60.435 61.111 20.43 2.70 43.71 4.26
298 299 2.435410 TCGCCAGTGATGCTGCAG 60.435 61.111 10.11 10.11 43.71 4.41
299 300 2.435410 CTCGCCAGTGATGCTGCA 60.435 61.111 4.13 4.13 43.71 4.41
300 301 3.873883 GCTCGCCAGTGATGCTGC 61.874 66.667 0.00 0.00 43.71 5.25
301 302 3.561213 CGCTCGCCAGTGATGCTG 61.561 66.667 0.00 0.00 44.63 4.41
302 303 3.763356 TCGCTCGCCAGTGATGCT 61.763 61.111 0.00 0.00 34.02 3.79
303 304 3.558411 GTCGCTCGCCAGTGATGC 61.558 66.667 0.00 0.00 41.29 3.91
304 305 3.250323 CGTCGCTCGCCAGTGATG 61.250 66.667 0.00 0.00 41.29 3.07
305 306 3.440415 TCGTCGCTCGCCAGTGAT 61.440 61.111 0.00 0.00 41.29 3.06
306 307 4.400109 GTCGTCGCTCGCCAGTGA 62.400 66.667 0.00 0.00 39.67 3.41
317 318 1.542272 TTTTTCGCTGGTCGTCGTCG 61.542 55.000 0.00 0.00 39.67 5.12
318 319 0.788391 ATTTTTCGCTGGTCGTCGTC 59.212 50.000 0.00 0.00 39.67 4.20
319 320 0.511221 CATTTTTCGCTGGTCGTCGT 59.489 50.000 0.00 0.00 39.67 4.34
320 321 0.511221 ACATTTTTCGCTGGTCGTCG 59.489 50.000 0.00 0.00 39.67 5.12
321 322 1.399727 CCACATTTTTCGCTGGTCGTC 60.400 52.381 0.00 0.00 39.67 4.20
322 323 0.591170 CCACATTTTTCGCTGGTCGT 59.409 50.000 0.00 0.00 39.67 4.34
323 324 0.591170 ACCACATTTTTCGCTGGTCG 59.409 50.000 0.00 0.00 30.85 4.79
324 325 2.331809 GACCACATTTTTCGCTGGTC 57.668 50.000 2.18 2.18 44.47 4.02
325 326 1.981256 AGACCACATTTTTCGCTGGT 58.019 45.000 0.00 0.00 39.84 4.00
326 327 4.701956 AATAGACCACATTTTTCGCTGG 57.298 40.909 0.00 0.00 0.00 4.85
327 328 6.747280 CCTAAAATAGACCACATTTTTCGCTG 59.253 38.462 0.00 0.00 36.99 5.18
328 329 6.433093 ACCTAAAATAGACCACATTTTTCGCT 59.567 34.615 0.00 0.00 36.99 4.93
329 330 6.617879 ACCTAAAATAGACCACATTTTTCGC 58.382 36.000 0.00 0.00 36.99 4.70
330 331 7.812648 TGACCTAAAATAGACCACATTTTTCG 58.187 34.615 0.00 0.00 36.99 3.46
331 332 9.626045 CTTGACCTAAAATAGACCACATTTTTC 57.374 33.333 0.00 0.00 36.99 2.29
332 333 8.088365 GCTTGACCTAAAATAGACCACATTTTT 58.912 33.333 0.00 0.00 36.99 1.94
333 334 7.232534 TGCTTGACCTAAAATAGACCACATTTT 59.767 33.333 0.00 0.00 38.69 1.82
334 335 6.719370 TGCTTGACCTAAAATAGACCACATTT 59.281 34.615 0.00 0.00 0.00 2.32
335 336 6.245408 TGCTTGACCTAAAATAGACCACATT 58.755 36.000 0.00 0.00 0.00 2.71
336 337 5.815581 TGCTTGACCTAAAATAGACCACAT 58.184 37.500 0.00 0.00 0.00 3.21
337 338 5.221843 ACTGCTTGACCTAAAATAGACCACA 60.222 40.000 0.00 0.00 0.00 4.17
338 339 5.122396 CACTGCTTGACCTAAAATAGACCAC 59.878 44.000 0.00 0.00 0.00 4.16
339 340 5.245531 CACTGCTTGACCTAAAATAGACCA 58.754 41.667 0.00 0.00 0.00 4.02
340 341 4.636206 CCACTGCTTGACCTAAAATAGACC 59.364 45.833 0.00 0.00 0.00 3.85
341 342 4.095036 GCCACTGCTTGACCTAAAATAGAC 59.905 45.833 0.00 0.00 33.53 2.59
342 343 4.261801 GCCACTGCTTGACCTAAAATAGA 58.738 43.478 0.00 0.00 33.53 1.98
343 344 3.378427 GGCCACTGCTTGACCTAAAATAG 59.622 47.826 0.00 0.00 37.74 1.73
344 345 3.245087 TGGCCACTGCTTGACCTAAAATA 60.245 43.478 0.00 0.00 37.74 1.40
345 346 2.171003 GGCCACTGCTTGACCTAAAAT 58.829 47.619 0.00 0.00 37.74 1.82
346 347 1.133637 TGGCCACTGCTTGACCTAAAA 60.134 47.619 0.00 0.00 37.74 1.52
347 348 0.476338 TGGCCACTGCTTGACCTAAA 59.524 50.000 0.00 0.00 37.74 1.85
348 349 0.036732 CTGGCCACTGCTTGACCTAA 59.963 55.000 0.00 0.00 37.74 2.69
349 350 1.679311 CTGGCCACTGCTTGACCTA 59.321 57.895 0.00 0.00 37.74 3.08
350 351 2.433446 CTGGCCACTGCTTGACCT 59.567 61.111 0.00 0.00 37.74 3.85
351 352 3.368571 GCTGGCCACTGCTTGACC 61.369 66.667 0.00 0.00 38.39 4.02
358 359 4.790962 ATCCGCAGCTGGCCACTG 62.791 66.667 23.28 23.28 40.31 3.66
359 360 4.790962 CATCCGCAGCTGGCCACT 62.791 66.667 17.12 0.75 40.31 4.00
361 362 4.349503 AACATCCGCAGCTGGCCA 62.350 61.111 17.12 4.71 40.31 5.36
362 363 3.818787 CAACATCCGCAGCTGGCC 61.819 66.667 17.12 0.00 40.31 5.36
363 364 2.747460 TCAACATCCGCAGCTGGC 60.747 61.111 17.12 6.97 39.90 4.85
364 365 2.110967 CCTCAACATCCGCAGCTGG 61.111 63.158 17.12 5.50 0.00 4.85
365 366 2.110967 CCCTCAACATCCGCAGCTG 61.111 63.158 10.11 10.11 0.00 4.24
366 367 2.270205 CCCTCAACATCCGCAGCT 59.730 61.111 0.00 0.00 0.00 4.24
367 368 2.825836 CCCCTCAACATCCGCAGC 60.826 66.667 0.00 0.00 0.00 5.25
368 369 1.987807 ATCCCCCTCAACATCCGCAG 61.988 60.000 0.00 0.00 0.00 5.18
369 370 2.000701 ATCCCCCTCAACATCCGCA 61.001 57.895 0.00 0.00 0.00 5.69
370 371 1.526917 CATCCCCCTCAACATCCGC 60.527 63.158 0.00 0.00 0.00 5.54
371 372 0.546122 TTCATCCCCCTCAACATCCG 59.454 55.000 0.00 0.00 0.00 4.18
372 373 2.489802 GGATTCATCCCCCTCAACATCC 60.490 54.545 0.00 0.00 41.20 3.51
373 374 2.175499 TGGATTCATCCCCCTCAACATC 59.825 50.000 3.26 0.00 46.59 3.06
374 375 2.091665 GTGGATTCATCCCCCTCAACAT 60.092 50.000 3.26 0.00 46.59 2.71
375 376 1.284785 GTGGATTCATCCCCCTCAACA 59.715 52.381 3.26 0.00 46.59 3.33
376 377 1.566231 AGTGGATTCATCCCCCTCAAC 59.434 52.381 3.26 0.00 46.59 3.18
377 378 1.565759 CAGTGGATTCATCCCCCTCAA 59.434 52.381 3.26 0.00 46.59 3.02
378 379 1.216064 CAGTGGATTCATCCCCCTCA 58.784 55.000 3.26 0.00 46.59 3.86
379 380 0.179006 GCAGTGGATTCATCCCCCTC 60.179 60.000 3.26 0.00 46.59 4.30
380 381 1.925888 GCAGTGGATTCATCCCCCT 59.074 57.895 3.26 0.00 46.59 4.79
381 382 1.526917 CGCAGTGGATTCATCCCCC 60.527 63.158 3.26 0.00 46.59 5.40
382 383 1.526917 CCGCAGTGGATTCATCCCC 60.527 63.158 3.26 0.00 46.59 4.81
383 384 1.526917 CCCGCAGTGGATTCATCCC 60.527 63.158 0.00 0.00 46.59 3.85
385 386 0.179000 ACTCCCGCAGTGGATTCATC 59.821 55.000 0.00 0.00 42.00 2.92
386 387 2.300996 ACTCCCGCAGTGGATTCAT 58.699 52.632 0.00 0.00 42.00 2.57
387 388 3.805928 ACTCCCGCAGTGGATTCA 58.194 55.556 0.00 0.00 42.00 2.57
398 399 4.812476 TTCCGCATCGCACTCCCG 62.812 66.667 0.00 0.00 0.00 5.14
399 400 1.776034 GAATTCCGCATCGCACTCCC 61.776 60.000 0.00 0.00 0.00 4.30
400 401 1.643832 GAATTCCGCATCGCACTCC 59.356 57.895 0.00 0.00 0.00 3.85
401 402 1.273887 CGAATTCCGCATCGCACTC 59.726 57.895 0.00 0.00 31.71 3.51
402 403 2.173669 CCGAATTCCGCATCGCACT 61.174 57.895 0.00 0.00 37.73 4.40
403 404 2.324477 CCGAATTCCGCATCGCAC 59.676 61.111 0.00 0.00 37.73 5.34
404 405 3.572539 GCCGAATTCCGCATCGCA 61.573 61.111 13.04 0.00 37.73 5.10
405 406 4.649954 CGCCGAATTCCGCATCGC 62.650 66.667 17.12 3.79 37.73 4.58
406 407 2.932083 CTCGCCGAATTCCGCATCG 61.932 63.158 17.12 6.41 38.74 3.84
407 408 2.598632 CCTCGCCGAATTCCGCATC 61.599 63.158 17.12 0.00 36.84 3.91
408 409 2.588877 CCTCGCCGAATTCCGCAT 60.589 61.111 17.12 0.00 36.84 4.73
430 431 2.314647 CCCATCACAAACGTCGCGT 61.315 57.895 5.77 0.00 43.97 6.01
431 432 2.474266 CCCATCACAAACGTCGCG 59.526 61.111 0.00 0.00 0.00 5.87
432 433 2.867472 CCCCATCACAAACGTCGC 59.133 61.111 0.00 0.00 0.00 5.19
433 434 2.867472 GCCCCATCACAAACGTCG 59.133 61.111 0.00 0.00 0.00 5.12
434 435 2.867472 CGCCCCATCACAAACGTC 59.133 61.111 0.00 0.00 0.00 4.34
435 436 3.361977 GCGCCCCATCACAAACGT 61.362 61.111 0.00 0.00 0.00 3.99
436 437 2.699768 ATGCGCCCCATCACAAACG 61.700 57.895 4.18 0.00 0.00 3.60
437 438 3.287445 ATGCGCCCCATCACAAAC 58.713 55.556 4.18 0.00 0.00 2.93
444 445 2.111043 CCGTTAGATGCGCCCCAT 59.889 61.111 4.18 0.00 36.70 4.00
445 446 3.379865 GACCGTTAGATGCGCCCCA 62.380 63.158 4.18 0.00 0.00 4.96
446 447 2.588034 GACCGTTAGATGCGCCCC 60.588 66.667 4.18 0.00 0.00 5.80
447 448 1.227556 ATGACCGTTAGATGCGCCC 60.228 57.895 4.18 0.00 0.00 6.13
448 449 1.498865 CCATGACCGTTAGATGCGCC 61.499 60.000 4.18 0.00 0.00 6.53
449 450 0.529773 TCCATGACCGTTAGATGCGC 60.530 55.000 0.00 0.00 0.00 6.09
450 451 1.491670 CTCCATGACCGTTAGATGCG 58.508 55.000 0.00 0.00 0.00 4.73
451 452 1.871080 CCTCCATGACCGTTAGATGC 58.129 55.000 0.00 0.00 0.00 3.91
452 453 1.869754 CGCCTCCATGACCGTTAGATG 60.870 57.143 0.00 0.00 0.00 2.90
453 454 0.389391 CGCCTCCATGACCGTTAGAT 59.611 55.000 0.00 0.00 0.00 1.98
454 455 0.681887 TCGCCTCCATGACCGTTAGA 60.682 55.000 0.00 0.00 0.00 2.10
455 456 0.527817 GTCGCCTCCATGACCGTTAG 60.528 60.000 0.00 0.00 0.00 2.34
456 457 0.968901 AGTCGCCTCCATGACCGTTA 60.969 55.000 0.00 0.00 35.71 3.18
457 458 1.827399 AAGTCGCCTCCATGACCGTT 61.827 55.000 0.00 0.00 35.71 4.44
458 459 0.968901 TAAGTCGCCTCCATGACCGT 60.969 55.000 0.00 0.00 35.71 4.83
459 460 0.527817 GTAAGTCGCCTCCATGACCG 60.528 60.000 0.00 0.00 35.71 4.79
460 461 0.535335 TGTAAGTCGCCTCCATGACC 59.465 55.000 0.00 0.00 35.71 4.02
461 462 2.604046 ATGTAAGTCGCCTCCATGAC 57.396 50.000 0.00 0.00 35.33 3.06
462 463 3.627395 AAATGTAAGTCGCCTCCATGA 57.373 42.857 0.00 0.00 0.00 3.07
463 464 3.065371 GGAAAATGTAAGTCGCCTCCATG 59.935 47.826 0.00 0.00 0.00 3.66
464 465 3.054361 AGGAAAATGTAAGTCGCCTCCAT 60.054 43.478 0.00 0.00 0.00 3.41
465 466 2.304761 AGGAAAATGTAAGTCGCCTCCA 59.695 45.455 0.00 0.00 0.00 3.86
466 467 2.937149 GAGGAAAATGTAAGTCGCCTCC 59.063 50.000 0.00 0.00 35.55 4.30
467 468 3.596214 TGAGGAAAATGTAAGTCGCCTC 58.404 45.455 0.00 0.00 40.56 4.70
468 469 3.695830 TGAGGAAAATGTAAGTCGCCT 57.304 42.857 0.00 0.00 0.00 5.52
469 470 4.759516 TTTGAGGAAAATGTAAGTCGCC 57.240 40.909 0.00 0.00 0.00 5.54
470 471 5.938322 TGATTTGAGGAAAATGTAAGTCGC 58.062 37.500 0.00 0.00 38.64 5.19
471 472 6.801862 GGTTGATTTGAGGAAAATGTAAGTCG 59.198 38.462 0.00 0.00 38.64 4.18
472 473 6.801862 CGGTTGATTTGAGGAAAATGTAAGTC 59.198 38.462 0.00 0.00 38.64 3.01
473 474 6.294508 CCGGTTGATTTGAGGAAAATGTAAGT 60.295 38.462 0.00 0.00 38.64 2.24
474 475 6.092748 CCGGTTGATTTGAGGAAAATGTAAG 58.907 40.000 0.00 0.00 38.64 2.34
475 476 5.536916 ACCGGTTGATTTGAGGAAAATGTAA 59.463 36.000 0.00 0.00 38.64 2.41
476 477 5.074115 ACCGGTTGATTTGAGGAAAATGTA 58.926 37.500 0.00 0.00 38.64 2.29
477 478 3.895041 ACCGGTTGATTTGAGGAAAATGT 59.105 39.130 0.00 0.00 38.64 2.71
478 479 4.519540 ACCGGTTGATTTGAGGAAAATG 57.480 40.909 0.00 0.00 38.64 2.32
479 480 5.545063 AAACCGGTTGATTTGAGGAAAAT 57.455 34.783 23.08 0.00 41.33 1.82
480 481 5.505985 CGTAAACCGGTTGATTTGAGGAAAA 60.506 40.000 23.08 0.00 0.00 2.29
481 482 4.023878 CGTAAACCGGTTGATTTGAGGAAA 60.024 41.667 23.08 0.00 0.00 3.13
482 483 3.499157 CGTAAACCGGTTGATTTGAGGAA 59.501 43.478 23.08 0.00 0.00 3.36
483 484 3.068560 CGTAAACCGGTTGATTTGAGGA 58.931 45.455 23.08 0.00 0.00 3.71
484 485 2.413634 GCGTAAACCGGTTGATTTGAGG 60.414 50.000 23.08 8.92 36.94 3.86
485 486 2.413634 GGCGTAAACCGGTTGATTTGAG 60.414 50.000 23.08 9.46 36.94 3.02
486 487 1.536331 GGCGTAAACCGGTTGATTTGA 59.464 47.619 23.08 0.00 36.94 2.69
487 488 1.538075 AGGCGTAAACCGGTTGATTTG 59.462 47.619 23.08 10.56 36.94 2.32
488 489 1.900245 AGGCGTAAACCGGTTGATTT 58.100 45.000 23.08 7.65 36.94 2.17
489 490 1.900245 AAGGCGTAAACCGGTTGATT 58.100 45.000 23.08 8.07 36.94 2.57
490 491 2.624636 CTAAGGCGTAAACCGGTTGAT 58.375 47.619 23.08 8.92 36.94 2.57
491 492 1.940752 GCTAAGGCGTAAACCGGTTGA 60.941 52.381 23.08 11.44 36.94 3.18
492 493 0.445043 GCTAAGGCGTAAACCGGTTG 59.555 55.000 23.08 9.92 36.94 3.77
493 494 0.035176 TGCTAAGGCGTAAACCGGTT 59.965 50.000 15.86 15.86 42.25 4.44
494 495 0.671472 GTGCTAAGGCGTAAACCGGT 60.671 55.000 0.00 0.00 42.25 5.28
495 496 0.390735 AGTGCTAAGGCGTAAACCGG 60.391 55.000 0.00 0.00 42.25 5.28
496 497 0.997196 GAGTGCTAAGGCGTAAACCG 59.003 55.000 0.00 0.00 42.25 4.44
497 498 0.997196 CGAGTGCTAAGGCGTAAACC 59.003 55.000 0.00 0.00 42.25 3.27
498 499 0.369248 GCGAGTGCTAAGGCGTAAAC 59.631 55.000 0.00 0.00 42.25 2.01
499 500 0.738412 GGCGAGTGCTAAGGCGTAAA 60.738 55.000 0.00 0.00 42.25 2.01
500 501 1.153706 GGCGAGTGCTAAGGCGTAA 60.154 57.895 0.00 0.00 42.25 3.18
501 502 2.344981 TGGCGAGTGCTAAGGCGTA 61.345 57.895 0.00 0.00 42.25 4.42
502 503 3.691342 TGGCGAGTGCTAAGGCGT 61.691 61.111 0.00 0.00 42.25 5.68
503 504 2.279502 TAGTGGCGAGTGCTAAGGCG 62.280 60.000 0.00 0.00 42.25 5.52
504 505 0.105039 ATAGTGGCGAGTGCTAAGGC 59.895 55.000 0.00 0.00 42.25 4.35
505 506 2.604046 AATAGTGGCGAGTGCTAAGG 57.396 50.000 0.00 0.00 42.25 2.69
506 507 3.521560 TCAAATAGTGGCGAGTGCTAAG 58.478 45.455 0.00 0.00 42.25 2.18
507 508 3.603158 TCAAATAGTGGCGAGTGCTAA 57.397 42.857 0.00 0.00 42.25 3.09
508 509 3.457234 CATCAAATAGTGGCGAGTGCTA 58.543 45.455 0.00 0.00 42.25 3.49
509 510 2.283298 CATCAAATAGTGGCGAGTGCT 58.717 47.619 0.00 0.00 42.25 4.40
510 511 1.268234 GCATCAAATAGTGGCGAGTGC 60.268 52.381 0.00 0.00 41.71 4.40
511 512 1.331756 GGCATCAAATAGTGGCGAGTG 59.668 52.381 0.00 0.00 0.00 3.51
512 513 1.668419 GGCATCAAATAGTGGCGAGT 58.332 50.000 0.00 0.00 0.00 4.18
516 517 3.632189 GATTTCGGCATCAAATAGTGGC 58.368 45.455 0.00 0.00 37.53 5.01
517 518 3.559655 TCGATTTCGGCATCAAATAGTGG 59.440 43.478 0.00 0.00 40.29 4.00
518 519 4.319046 CCTCGATTTCGGCATCAAATAGTG 60.319 45.833 0.00 0.00 40.29 2.74
519 520 3.809832 CCTCGATTTCGGCATCAAATAGT 59.190 43.478 0.00 0.00 40.29 2.12
520 521 3.364366 GCCTCGATTTCGGCATCAAATAG 60.364 47.826 8.45 0.00 45.59 1.73
521 522 2.548057 GCCTCGATTTCGGCATCAAATA 59.452 45.455 8.45 0.00 45.59 1.40
522 523 1.334869 GCCTCGATTTCGGCATCAAAT 59.665 47.619 8.45 0.00 45.59 2.32
523 524 0.732571 GCCTCGATTTCGGCATCAAA 59.267 50.000 8.45 0.00 45.59 2.69
524 525 2.393557 GCCTCGATTTCGGCATCAA 58.606 52.632 8.45 0.00 45.59 2.57
525 526 4.124910 GCCTCGATTTCGGCATCA 57.875 55.556 8.45 0.00 45.59 3.07
530 531 2.830186 TTTGGGGGCCTCGATTTCGG 62.830 60.000 0.84 0.00 40.29 4.30
531 532 1.377987 TTTGGGGGCCTCGATTTCG 60.378 57.895 0.84 0.00 41.45 3.46
574 575 7.765695 TTGAGAATTGGCAGATAGAACTTTT 57.234 32.000 0.00 0.00 0.00 2.27
603 610 3.751518 ACCGTGGCAGATAGAACTTTTT 58.248 40.909 0.00 0.00 0.00 1.94
604 611 3.335579 GACCGTGGCAGATAGAACTTTT 58.664 45.455 0.00 0.00 0.00 2.27
631 638 3.041211 AGATCATGATCTCCCGGTCAAA 58.959 45.455 28.92 0.00 44.37 2.69
633 640 1.966354 CAGATCATGATCTCCCGGTCA 59.034 52.381 31.15 0.00 45.78 4.02
683 690 1.603739 GGACAAGTGGCACCCCTTC 60.604 63.158 15.27 5.82 0.00 3.46
702 709 0.452184 TGATCTCGCGGTCAAGACTC 59.548 55.000 6.13 2.62 0.00 3.36
725 732 1.953017 CTCTCTAGATGCCGTCCGG 59.047 63.158 0.24 0.24 38.57 5.14
815 823 0.335361 GTGAGGGGAGAGGAGGTGTA 59.665 60.000 0.00 0.00 0.00 2.90
875 886 1.153842 CGGGCCGGAAAGAAATTGC 60.154 57.895 20.56 0.00 0.00 3.56
876 887 0.451783 CTCGGGCCGGAAAGAAATTG 59.548 55.000 27.98 0.00 0.00 2.32
877 888 1.313091 GCTCGGGCCGGAAAGAAATT 61.313 55.000 27.98 0.00 0.00 1.82
953 964 1.005037 TCAGCTCGTCGTGGCAAAT 60.005 52.632 13.30 0.00 0.00 2.32
956 967 2.819117 GATGTCAGCTCGTCGTGGCA 62.819 60.000 13.30 3.83 31.64 4.92
1056 1067 2.048503 GGGGTGTGAACGGACTCG 60.049 66.667 0.00 0.00 43.02 4.18
1546 1557 2.124860 GTTTAGCCCGGTGCCGAT 60.125 61.111 12.71 0.47 42.71 4.18
1602 1613 0.533951 CCTTTGGCTTTGGCTGGATC 59.466 55.000 0.00 0.00 38.73 3.36
1665 1676 1.407437 GCAGCTACTAATGGTGTGCCT 60.407 52.381 0.00 0.00 35.60 4.75
2140 2151 4.757149 GCATGTACCTTATCAACATCCTCC 59.243 45.833 0.00 0.00 31.60 4.30
2290 2317 1.279840 GCGCGTCTTTTTGAGCAGT 59.720 52.632 8.43 0.00 0.00 4.40
2299 2326 1.499056 CTGCTTCATGCGCGTCTTT 59.501 52.632 8.43 0.00 46.63 2.52
2341 2368 7.776030 TCAAAATAAGACACAAGTTCCTTACCA 59.224 33.333 0.00 0.00 0.00 3.25
2407 2434 3.470645 AAACGTCCCTATACATCAGCC 57.529 47.619 0.00 0.00 0.00 4.85
2439 2466 4.519906 ATCTACCCCAAACATACCAAGG 57.480 45.455 0.00 0.00 0.00 3.61
2516 2543 8.407832 CAATTTATCTGCAATTCATACTGACCA 58.592 33.333 0.00 0.00 0.00 4.02
2552 2581 9.485206 TGGTTCTTAGTTGTTAGTTCTTATGTC 57.515 33.333 0.00 0.00 0.00 3.06
2744 2939 9.602568 TTAATATCTGTTGAATGCATGCATTTT 57.397 25.926 38.66 28.06 45.50 1.82
2745 2940 9.772973 ATTAATATCTGTTGAATGCATGCATTT 57.227 25.926 38.66 26.04 45.50 2.32
2777 2974 2.093658 AGCAACATACACTAGGGGTTCG 60.094 50.000 0.00 0.00 0.00 3.95
2853 3247 7.096884 TGTCACTACAGACCTCATACATAAC 57.903 40.000 0.00 0.00 37.73 1.89
2912 6840 0.607489 ACAGAACATCCTGCAGCCAC 60.607 55.000 8.66 0.00 37.68 5.01
3027 6961 7.841282 ATATATGAGTATTATGGGACGGGAG 57.159 40.000 0.00 0.00 0.00 4.30
3029 6963 7.070696 TCCAATATATGAGTATTATGGGACGGG 59.929 40.741 0.00 0.00 31.10 5.28
3030 6964 8.018537 TCCAATATATGAGTATTATGGGACGG 57.981 38.462 0.00 0.00 31.10 4.79
3031 6965 9.481340 CATCCAATATATGAGTATTATGGGACG 57.519 37.037 0.00 0.00 31.10 4.79
3057 6991 9.798994 CCGTCCCATAATATAAGATGTTACTAC 57.201 37.037 0.00 0.00 0.00 2.73
3058 6992 9.758021 TCCGTCCCATAATATAAGATGTTACTA 57.242 33.333 0.00 0.00 0.00 1.82
3059 6993 8.660295 TCCGTCCCATAATATAAGATGTTACT 57.340 34.615 0.00 0.00 0.00 2.24
3060 6994 7.980099 CCTCCGTCCCATAATATAAGATGTTAC 59.020 40.741 0.00 0.00 0.00 2.50
3061 6995 7.125204 CCCTCCGTCCCATAATATAAGATGTTA 59.875 40.741 0.00 0.00 0.00 2.41
3062 6996 6.070194 CCCTCCGTCCCATAATATAAGATGTT 60.070 42.308 0.00 0.00 0.00 2.71
3063 6997 5.425539 CCCTCCGTCCCATAATATAAGATGT 59.574 44.000 0.00 0.00 0.00 3.06
3064 6998 5.661312 TCCCTCCGTCCCATAATATAAGATG 59.339 44.000 0.00 0.00 0.00 2.90
3065 6999 5.850278 TCCCTCCGTCCCATAATATAAGAT 58.150 41.667 0.00 0.00 0.00 2.40
3066 7000 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3067 7001 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3068 7002 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3069 7003 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3070 7004 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3071 7005 4.687262 ATACTCCCTCCGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
3072 7006 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
3073 7007 4.044952 TCATATACTCCCTCCGTCCCATAA 59.955 45.833 0.00 0.00 0.00 1.90
3074 7008 3.594685 TCATATACTCCCTCCGTCCCATA 59.405 47.826 0.00 0.00 0.00 2.74
3075 7009 2.382305 TCATATACTCCCTCCGTCCCAT 59.618 50.000 0.00 0.00 0.00 4.00
3076 7010 1.784593 TCATATACTCCCTCCGTCCCA 59.215 52.381 0.00 0.00 0.00 4.37
3077 7011 2.599408 TCATATACTCCCTCCGTCCC 57.401 55.000 0.00 0.00 0.00 4.46
3078 7012 5.446860 TGATATCATATACTCCCTCCGTCC 58.553 45.833 0.00 0.00 0.00 4.79
3079 7013 8.871629 ATATGATATCATATACTCCCTCCGTC 57.128 38.462 29.00 0.00 45.03 4.79
3180 7114 3.124636 CACGTCATTTGTAGGTTAGCACC 59.875 47.826 0.00 0.00 44.67 5.01
3251 7187 5.411977 GTGAAGGTTTAGAGGTCTAAAAGCC 59.588 44.000 12.68 10.96 46.35 4.35
3789 7750 4.816385 TCATGACCTGTTTGAGTGAAGTTC 59.184 41.667 0.00 0.00 0.00 3.01
3792 7753 3.750130 CCTCATGACCTGTTTGAGTGAAG 59.250 47.826 0.00 0.00 36.06 3.02
3835 7799 5.446473 CCTTCTTGTGTGCGAGCTTATAAAG 60.446 44.000 0.00 0.00 0.00 1.85
3883 7852 3.165875 TGCTCCAGTTAGCTTCTGTACT 58.834 45.455 14.51 0.24 43.19 2.73
3898 7868 2.580815 CACTCGGATGCTGCTCCA 59.419 61.111 15.25 5.21 34.78 3.86
3919 7889 0.527565 CCACCTTGTATGGCTTGTGC 59.472 55.000 0.00 0.00 38.76 4.57
3920 7890 1.176527 CCCACCTTGTATGGCTTGTG 58.823 55.000 0.00 0.00 35.74 3.33
3923 7893 2.158385 TGAAACCCACCTTGTATGGCTT 60.158 45.455 0.00 0.00 35.74 4.35
3924 7894 1.427368 TGAAACCCACCTTGTATGGCT 59.573 47.619 0.00 0.00 35.74 4.75
3925 7895 1.818674 CTGAAACCCACCTTGTATGGC 59.181 52.381 0.00 0.00 35.74 4.40
3926 7896 2.446435 CCTGAAACCCACCTTGTATGG 58.554 52.381 0.00 0.00 36.94 2.74
3995 7971 4.337304 TGGAGCTCAGGGAGGCCA 62.337 66.667 17.19 0.00 0.00 5.36
4110 8086 1.606531 GCTGGAGAGCCACCTGATT 59.393 57.895 0.00 0.00 39.92 2.57
4306 8291 4.075682 CTCTTACTCTGTGTCTCCTGTGA 58.924 47.826 0.00 0.00 0.00 3.58
4362 8347 3.010027 TGTGCATATGAACTTCTTGGGGA 59.990 43.478 15.07 0.00 0.00 4.81
4371 8361 4.778213 ACAGGGTATGTGCATATGAACT 57.222 40.909 15.07 3.57 41.91 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.