AutoCloner

Multiple sequence alignment - TraesCS5B01G204700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G204700	chr5B	100.000	2458	0	0	1	2458	373042235	373044692	0.000000e+00	4540.0
1	TraesCS5B01G204700	chr5B	82.639	288	21	12	55	314	372867251	372867537	6.840000e-56	228.0
2	TraesCS5B01G204700	chr5B	98.077	52	1	0	2309	2360	386392009	386391958	9.360000e-15	91.6
3	TraesCS5B01G204700	chr5B	90.769	65	5	1	1	65	372866988	372867051	4.360000e-13	86.1
4	TraesCS5B01G204700	chr5D	92.267	2289	109	32	55	2312	321899169	321901420	0.000000e+00	3184.0
5	TraesCS5B01G204700	chr5D	81.339	493	36	24	58	504	321888929	321889411	1.400000e-92	350.0
6	TraesCS5B01G204700	chr5D	86.765	68	6	1	1	65	321899088	321899155	3.390000e-09	73.1
7	TraesCS5B01G204700	chr5A	87.507	1913	112	47	436	2295	417044075	417045913	0.000000e+00	2091.0
8	TraesCS5B01G204700	chr5A	81.687	486	36	25	57	499	417029401	417029876	3.010000e-94	355.0
9	TraesCS5B01G204700	chr5A	88.696	115	9	3	144	254	417043452	417043566	1.190000e-28	137.0
10	TraesCS5B01G204700	chr5A	98.507	67	1	0	2392	2458	417045912	417045978	4.290000e-23	119.0
11	TraesCS5B01G204700	chr3B	93.745	1343	36	13	2	1332	585727684	585728990	0.000000e+00	1971.0
12	TraesCS5B01G204700	chr3B	92.785	596	40	2	1714	2308	585729018	585729611	0.000000e+00	859.0
13	TraesCS5B01G204700	chr3B	87.500	72	6	3	2290	2359	704578400	704578470	2.030000e-11	80.5
14	TraesCS5B01G204700	chr4A	87.415	731	50	18	1136	1852	374661865	374661163	0.000000e+00	802.0
15	TraesCS5B01G204700	chr7A	87.853	708	51	16	1152	1852	3419746	3419067	0.000000e+00	798.0
16	TraesCS5B01G204700	chrUn	88.309	556	34	13	1291	1839	82536248	82536779	2.670000e-179	638.0
17	TraesCS5B01G204700	chr4D	92.537	67	4	1	2301	2367	68711464	68711399	7.240000e-16	95.3
18	TraesCS5B01G204700	chr2D	92.424	66	4	1	2302	2367	440316012	440316076	2.600000e-15	93.5
19	TraesCS5B01G204700	chr2D	91.667	60	4	1	2308	2367	598951325	598951267	5.630000e-12	82.4
20	TraesCS5B01G204700	chr2B	92.424	66	4	1	2302	2367	518041438	518041502	2.600000e-15	93.5
21	TraesCS5B01G204700	chr7B	98.077	52	1	0	2309	2360	226609235	226609184	9.360000e-15	91.6
22	TraesCS5B01G204700	chr1B	94.737	57	3	0	2302	2358	263552316	263552372	3.370000e-14	89.8
23	TraesCS5B01G204700	chr1A	94.737	57	3	0	2302	2358	221699753	221699809	3.370000e-14	89.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G204700	chr5B	373042235	373044692	2457	False	4540.000000	4540	100.000	1	2458	1	chr5B.!!$F1	2457
1	TraesCS5B01G204700	chr5D	321899088	321901420	2332	False	1628.550000	3184	89.516	1	2312	2	chr5D.!!$F2	2311
2	TraesCS5B01G204700	chr5A	417043452	417045978	2526	False	782.333333	2091	91.570	144	2458	3	chr5A.!!$F2	2314
3	TraesCS5B01G204700	chr3B	585727684	585729611	1927	False	1415.000000	1971	93.265	2	2308	2	chr3B.!!$F2	2306
4	TraesCS5B01G204700	chr4A	374661163	374661865	702	True	802.000000	802	87.415	1136	1852	1	chr4A.!!$R1	716
5	TraesCS5B01G204700	chr7A	3419067	3419746	679	True	798.000000	798	87.853	1152	1852	1	chr7A.!!$R1	700
6	TraesCS5B01G204700	chrUn	82536248	82536779	531	False	638.000000	638	88.309	1291	1839	1	chrUn.!!$F1	548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
258	321	0.46546	TTCACTGGGTCGCTGCTTTT	60.465	50.0	0.0	0.0	0.0	2.27	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1699	2170	3.009723	ACATTCAGAATAGTGCCAACCG	58.99	45.455	0.0	0.0	0.0	4.44	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
88	118	2.642311	TCTTCCTGGAATACACCAAGCA	59.358	45.455	10.03	0.00	39.59	3.91
198	233	1.373246	CAAACATGCTGCGGGTTGG	60.373	57.895	12.43	5.37	0.00	3.77
228	263	3.070018	CTCACTGTCTGGACACCAAATC	58.930	50.000	0.00	0.00	36.21	2.17
258	321	0.465460	TTCACTGGGTCGCTGCTTTT	60.465	50.000	0.00	0.00	0.00	2.27
277	343	8.306313	TGCTTTTCTCACTGTATAATCTCCTA	57.694	34.615	0.00	0.00	0.00	2.94
420	490	4.287067	ACAAGGCTGGAAGAGTCAAGATTA	59.713	41.667	0.00	0.00	34.07	1.75
431	501	5.374921	AGAGTCAAGATTAATGCCATGGAG	58.625	41.667	18.40	0.00	0.00	3.86
469	834	6.662414	TCGGATATGTTCACACAGATTTTC	57.338	37.500	0.00	0.00	34.87	2.29
471	836	5.353956	CGGATATGTTCACACAGATTTTCCA	59.646	40.000	0.00	0.00	34.87	3.53
520	885	4.120589	GACAAATCTACCCGTCATCTTCC	58.879	47.826	0.00	0.00	0.00	3.46
521	886	3.118371	ACAAATCTACCCGTCATCTTCCC	60.118	47.826	0.00	0.00	0.00	3.97
710	1104	9.561069	TGCCTCTCCAAACTTATAAAATAGATC	57.439	33.333	0.00	0.00	0.00	2.75
754	1149	5.663106	TCCTACCAGCAACTGATAAAGATCT	59.337	40.000	0.00	0.00	32.44	2.75
1028	1437	4.778213	ACAGGGTATGTGCATATGAACT	57.222	40.909	15.07	3.57	41.91	3.01
1036	1445	3.355378	TGTGCATATGAACTTCTTGGGG	58.645	45.455	15.07	0.00	0.00	4.96
1037	1446	3.010027	TGTGCATATGAACTTCTTGGGGA	59.990	43.478	15.07	0.00	0.00	4.81
1093	1507	4.075682	CTCTTACTCTGTGTCTCCTGTGA	58.924	47.826	0.00	0.00	0.00	3.58
1289	1712	1.606531	GCTGGAGAGCCACCTGATT	59.393	57.895	0.00	0.00	39.92	2.57
1404	1827	4.337304	TGGAGCTCAGGGAGGCCA	62.337	66.667	17.19	0.00	0.00	5.36
1473	1902	2.446435	CCTGAAACCCACCTTGTATGG	58.554	52.381	0.00	0.00	36.94	2.74
1474	1903	1.818674	CTGAAACCCACCTTGTATGGC	59.181	52.381	0.00	0.00	35.74	4.40
1475	1904	1.427368	TGAAACCCACCTTGTATGGCT	59.573	47.619	0.00	0.00	35.74	4.75
1476	1905	2.158385	TGAAACCCACCTTGTATGGCTT	60.158	45.455	0.00	0.00	35.74	4.35
1477	1906	1.923356	AACCCACCTTGTATGGCTTG	58.077	50.000	0.00	0.00	35.74	4.01
1478	1907	0.777446	ACCCACCTTGTATGGCTTGT	59.223	50.000	0.00	0.00	35.74	3.16
1479	1908	1.176527	CCCACCTTGTATGGCTTGTG	58.823	55.000	0.00	0.00	35.74	3.33
1480	1909	0.527565	CCACCTTGTATGGCTTGTGC	59.472	55.000	0.00	0.00	38.76	4.57
1501	1938	2.580815	CACTCGGATGCTGCTCCA	59.419	61.111	15.25	5.21	34.78	3.86
1516	1954	3.165875	TGCTCCAGTTAGCTTCTGTACT	58.834	45.455	14.51	0.24	43.19	2.73
1564	2007	5.446473	CCTTCTTGTGTGCGAGCTTATAAAG	60.446	44.000	0.00	0.00	0.00	1.85
1607	2053	3.750130	CCTCATGACCTGTTTGAGTGAAG	59.250	47.826	0.00	0.00	36.06	3.02
1610	2056	4.816385	TCATGACCTGTTTGAGTGAAGTTC	59.184	41.667	0.00	0.00	0.00	3.01
2148	2621	5.411977	GTGAAGGTTTAGAGGTCTAAAAGCC	59.588	44.000	12.68	10.96	46.35	4.35
2219	2694	3.124636	CACGTCATTTGTAGGTTAGCACC	59.875	47.826	0.00	0.00	44.67	5.01
2320	2795	8.871629	ATATGATATCATATACTCCCTCCGTC	57.128	38.462	29.00	0.00	45.03	4.79
2321	2796	5.446860	TGATATCATATACTCCCTCCGTCC	58.553	45.833	0.00	0.00	0.00	4.79
2322	2797	2.599408	TCATATACTCCCTCCGTCCC	57.401	55.000	0.00	0.00	0.00	4.46
2323	2798	1.784593	TCATATACTCCCTCCGTCCCA	59.215	52.381	0.00	0.00	0.00	4.37
2324	2799	2.382305	TCATATACTCCCTCCGTCCCAT	59.618	50.000	0.00	0.00	0.00	4.00
2325	2800	3.594685	TCATATACTCCCTCCGTCCCATA	59.405	47.826	0.00	0.00	0.00	2.74
2326	2801	4.044952	TCATATACTCCCTCCGTCCCATAA	59.955	45.833	0.00	0.00	0.00	1.90
2327	2802	3.562108	ATACTCCCTCCGTCCCATAAT	57.438	47.619	0.00	0.00	0.00	1.28
2328	2803	4.687262	ATACTCCCTCCGTCCCATAATA	57.313	45.455	0.00	0.00	0.00	0.98
2329	2804	3.562108	ACTCCCTCCGTCCCATAATAT	57.438	47.619	0.00	0.00	0.00	1.28
2330	2805	4.687262	ACTCCCTCCGTCCCATAATATA	57.313	45.455	0.00	0.00	0.00	0.86
2331	2806	5.019657	ACTCCCTCCGTCCCATAATATAA	57.980	43.478	0.00	0.00	0.00	0.98
2332	2807	5.024118	ACTCCCTCCGTCCCATAATATAAG	58.976	45.833	0.00	0.00	0.00	1.73
2333	2808	5.222484	ACTCCCTCCGTCCCATAATATAAGA	60.222	44.000	0.00	0.00	0.00	2.10
2334	2809	5.850278	TCCCTCCGTCCCATAATATAAGAT	58.150	41.667	0.00	0.00	0.00	2.40
2335	2810	5.661312	TCCCTCCGTCCCATAATATAAGATG	59.339	44.000	0.00	0.00	0.00	2.90
2336	2811	5.425539	CCCTCCGTCCCATAATATAAGATGT	59.574	44.000	0.00	0.00	0.00	3.06
2337	2812	6.070194	CCCTCCGTCCCATAATATAAGATGTT	60.070	42.308	0.00	0.00	0.00	2.71
2338	2813	7.125204	CCCTCCGTCCCATAATATAAGATGTTA	59.875	40.741	0.00	0.00	0.00	2.41
2339	2814	7.980099	CCTCCGTCCCATAATATAAGATGTTAC	59.020	40.741	0.00	0.00	0.00	2.50
2340	2815	8.660295	TCCGTCCCATAATATAAGATGTTACT	57.340	34.615	0.00	0.00	0.00	2.24
2341	2816	9.758021	TCCGTCCCATAATATAAGATGTTACTA	57.242	33.333	0.00	0.00	0.00	1.82
2342	2817	9.798994	CCGTCCCATAATATAAGATGTTACTAC	57.201	37.037	0.00	0.00	0.00	2.73
2368	2843	9.481340	CATCCAATATATGAGTATTATGGGACG	57.519	37.037	0.00	0.00	31.10	4.79
2369	2844	8.018537	TCCAATATATGAGTATTATGGGACGG	57.981	38.462	0.00	0.00	31.10	4.79
2370	2845	7.070696	TCCAATATATGAGTATTATGGGACGGG	59.929	40.741	0.00	0.00	31.10	5.28
2371	2846	7.070696	CCAATATATGAGTATTATGGGACGGGA	59.929	40.741	0.00	0.00	0.00	5.14
2372	2847	7.841282	ATATATGAGTATTATGGGACGGGAG	57.159	40.000	0.00	0.00	0.00	4.30
2447	2922	9.959749	TTATAGAAGCAAACAAAACTTTACCAG	57.040	29.630	0.00	0.00	0.00	4.00

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
88	118	6.124340	TCCTTTGAATGCATGATGATACACT	58.876	36.000	0.00	0.00	0.00	3.55
198	233	1.337635	CCAGACAGTGAGAACTGCTCC	60.338	57.143	5.79	0.00	43.26	4.70
258	321	9.126151	CTTTCACTAGGAGATTATACAGTGAGA	57.874	37.037	0.00	0.00	42.23	3.27
277	343	1.215423	AGTTTGACCCTGCCTTTCACT	59.785	47.619	0.00	0.00	0.00	3.41
520	885	4.697352	AGAAATCATGGTGAAAAGACGAGG	59.303	41.667	0.00	0.00	0.00	4.63
521	886	5.163814	GGAGAAATCATGGTGAAAAGACGAG	60.164	44.000	0.00	0.00	0.00	4.18
634	1027	4.487714	CCTGTAGGCTTGTGGAAGATAA	57.512	45.455	0.00	0.00	0.00	1.75
710	1104	1.651240	CCTGCAAACATGCTCTCGGG	61.651	60.000	2.22	0.00	35.49	5.14
754	1149	5.620206	TGTTCCTTTGCTATCTGTTCTTCA	58.380	37.500	0.00	0.00	0.00	3.02
1028	1437	2.759114	CTGCTGCCTCCCCAAGAA	59.241	61.111	0.00	0.00	0.00	2.52
1036	1445	4.117661	GCTTGCTGCTGCTGCCTC	62.118	66.667	25.44	12.52	40.48	4.70
1037	1446	4.968766	TGCTTGCTGCTGCTGCCT	62.969	61.111	25.44	0.00	43.37	4.75
1477	1906	3.503363	GCATCCGAGTGCTGGCAC	61.503	66.667	16.81	16.81	46.50	5.01
1501	1938	8.507524	AAAAGTTTCAAGTACAGAAGCTAACT	57.492	30.769	14.56	7.30	35.84	2.24
1516	1954	6.266786	GGGGTAAATCCTCTGAAAAGTTTCAA	59.733	38.462	7.80	0.00	40.22	2.69
1564	2007	7.044181	TGAGGAGTACAGATCAAAATGATGAC	58.956	38.462	0.00	0.00	37.20	3.06
1607	2053	6.485648	AGTGGTGAAATAACTAAGTGGTGAAC	59.514	38.462	0.00	0.00	0.00	3.18
1610	2056	5.995282	TCAGTGGTGAAATAACTAAGTGGTG	59.005	40.000	0.00	0.00	0.00	4.17
1699	2170	3.009723	ACATTCAGAATAGTGCCAACCG	58.990	45.455	0.00	0.00	0.00	4.44
1998	2471	5.129320	TCACAGGATTATATATGGCGCTGAT	59.871	40.000	7.64	2.09	0.00	2.90
2148	2621	6.804783	TCGTACTTCATGGTATTATACATGCG	59.195	38.462	4.67	5.52	43.11	4.73
2186	2661	9.391006	ACCTACAAATGACGTGTTTATTATGAT	57.609	29.630	0.00	0.00	0.00	2.45
2190	2665	8.658609	GCTAACCTACAAATGACGTGTTTATTA	58.341	33.333	0.00	0.00	0.00	0.98
2219	2694	8.253810	TGATTCTTTCCAGACTGTACATTCTAG	58.746	37.037	14.69	8.64	0.00	2.43
2297	2772	6.071984	GGACGGAGGGAGTATATGATATCAT	58.928	44.000	21.50	21.50	40.22	2.45
2298	2773	5.446860	GGACGGAGGGAGTATATGATATCA	58.553	45.833	8.10	8.10	0.00	2.15
2299	2774	4.828387	GGGACGGAGGGAGTATATGATATC	59.172	50.000	0.00	0.00	0.00	1.63
2302	2777	2.382305	TGGGACGGAGGGAGTATATGAT	59.618	50.000	0.00	0.00	0.00	2.45
2303	2778	1.784593	TGGGACGGAGGGAGTATATGA	59.215	52.381	0.00	0.00	0.00	2.15
2304	2779	2.304221	TGGGACGGAGGGAGTATATG	57.696	55.000	0.00	0.00	0.00	1.78
2306	2781	4.687262	ATTATGGGACGGAGGGAGTATA	57.313	45.455	0.00	0.00	0.00	1.47
2307	2782	3.562108	ATTATGGGACGGAGGGAGTAT	57.438	47.619	0.00	0.00	0.00	2.12
2308	2783	4.687262	ATATTATGGGACGGAGGGAGTA	57.313	45.455	0.00	0.00	0.00	2.59
2309	2784	3.562108	ATATTATGGGACGGAGGGAGT	57.438	47.619	0.00	0.00	0.00	3.85
2310	2785	5.269991	TCTTATATTATGGGACGGAGGGAG	58.730	45.833	0.00	0.00	0.00	4.30
2311	2786	5.279562	TCTTATATTATGGGACGGAGGGA	57.720	43.478	0.00	0.00	0.00	4.20
2312	2787	5.425539	ACATCTTATATTATGGGACGGAGGG	59.574	44.000	0.00	0.00	0.00	4.30
2313	2788	6.546428	ACATCTTATATTATGGGACGGAGG	57.454	41.667	0.00	0.00	0.00	4.30
2314	2789	8.750298	AGTAACATCTTATATTATGGGACGGAG	58.250	37.037	0.00	0.00	0.00	4.63
2315	2790	8.660295	AGTAACATCTTATATTATGGGACGGA	57.340	34.615	0.00	0.00	0.00	4.69
2316	2791	9.798994	GTAGTAACATCTTATATTATGGGACGG	57.201	37.037	0.00	0.00	0.00	4.79
2342	2817	9.481340	CGTCCCATAATACTCATATATTGGATG	57.519	37.037	0.00	0.00	29.88	3.51
2343	2818	8.651389	CCGTCCCATAATACTCATATATTGGAT	58.349	37.037	0.00	0.00	29.88	3.41
2344	2819	7.070696	CCCGTCCCATAATACTCATATATTGGA	59.929	40.741	0.00	0.00	29.88	3.53
2345	2820	7.070696	TCCCGTCCCATAATACTCATATATTGG	59.929	40.741	0.00	0.00	0.00	3.16
2346	2821	8.018537	TCCCGTCCCATAATACTCATATATTG	57.981	38.462	0.00	0.00	0.00	1.90
2347	2822	7.844779	ACTCCCGTCCCATAATACTCATATATT	59.155	37.037	0.00	0.00	0.00	1.28
2348	2823	7.363031	ACTCCCGTCCCATAATACTCATATAT	58.637	38.462	0.00	0.00	0.00	0.86
2349	2824	6.738635	ACTCCCGTCCCATAATACTCATATA	58.261	40.000	0.00	0.00	0.00	0.86
2350	2825	5.590818	ACTCCCGTCCCATAATACTCATAT	58.409	41.667	0.00	0.00	0.00	1.78
2351	2826	5.006896	ACTCCCGTCCCATAATACTCATA	57.993	43.478	0.00	0.00	0.00	2.15
2352	2827	3.858135	ACTCCCGTCCCATAATACTCAT	58.142	45.455	0.00	0.00	0.00	2.90
2353	2828	3.323774	ACTCCCGTCCCATAATACTCA	57.676	47.619	0.00	0.00	0.00	3.41
2354	2829	4.771054	ACATACTCCCGTCCCATAATACTC	59.229	45.833	0.00	0.00	0.00	2.59
2355	2830	4.748701	ACATACTCCCGTCCCATAATACT	58.251	43.478	0.00	0.00	0.00	2.12
2356	2831	5.479124	AACATACTCCCGTCCCATAATAC	57.521	43.478	0.00	0.00	0.00	1.89
2357	2832	7.615039	TTTAACATACTCCCGTCCCATAATA	57.385	36.000	0.00	0.00	0.00	0.98
2358	2833	6.503560	TTTAACATACTCCCGTCCCATAAT	57.496	37.500	0.00	0.00	0.00	1.28
2359	2834	5.954153	TTTAACATACTCCCGTCCCATAA	57.046	39.130	0.00	0.00	0.00	1.90
2360	2835	5.662208	TCTTTTAACATACTCCCGTCCCATA	59.338	40.000	0.00	0.00	0.00	2.74
2361	2836	4.472108	TCTTTTAACATACTCCCGTCCCAT	59.528	41.667	0.00	0.00	0.00	4.00
2362	2837	3.839490	TCTTTTAACATACTCCCGTCCCA	59.161	43.478	0.00	0.00	0.00	4.37
2363	2838	4.476628	TCTTTTAACATACTCCCGTCCC	57.523	45.455	0.00	0.00	0.00	4.46
2364	2839	6.429078	AGTTTTCTTTTAACATACTCCCGTCC	59.571	38.462	0.00	0.00	0.00	4.79
2365	2840	7.430992	AGTTTTCTTTTAACATACTCCCGTC	57.569	36.000	0.00	0.00	0.00	4.79
2366	2841	8.907222	TTAGTTTTCTTTTAACATACTCCCGT	57.093	30.769	0.00	0.00	0.00	5.28
2367	2842	9.769093	CATTAGTTTTCTTTTAACATACTCCCG	57.231	33.333	0.00	0.00	0.00	5.14
2375	2850	9.137459	TGGGACATCATTAGTTTTCTTTTAACA	57.863	29.630	0.00	0.00	0.00	2.41
2376	2851	9.974980	TTGGGACATCATTAGTTTTCTTTTAAC	57.025	29.630	0.00	0.00	39.30	2.01
2378	2853	9.974980	GTTTGGGACATCATTAGTTTTCTTTTA	57.025	29.630	0.00	0.00	39.30	1.52
2379	2854	7.931407	GGTTTGGGACATCATTAGTTTTCTTTT	59.069	33.333	0.00	0.00	39.30	2.27
2380	2855	7.070571	TGGTTTGGGACATCATTAGTTTTCTTT	59.929	33.333	0.00	0.00	39.30	2.52
2381	2856	6.553100	TGGTTTGGGACATCATTAGTTTTCTT	59.447	34.615	0.00	0.00	39.30	2.52
2382	2857	6.074648	TGGTTTGGGACATCATTAGTTTTCT	58.925	36.000	0.00	0.00	39.30	2.52
2383	2858	6.339587	TGGTTTGGGACATCATTAGTTTTC	57.660	37.500	0.00	0.00	39.30	2.29
2384	2859	6.739331	TTGGTTTGGGACATCATTAGTTTT	57.261	33.333	0.00	0.00	39.30	2.43
2385	2860	6.739331	TTTGGTTTGGGACATCATTAGTTT	57.261	33.333	0.00	0.00	39.30	2.66
2386	2861	6.521162	GTTTTGGTTTGGGACATCATTAGTT	58.479	36.000	0.00	0.00	39.30	2.24
2387	2862	5.278758	CGTTTTGGTTTGGGACATCATTAGT	60.279	40.000	0.00	0.00	39.30	2.24
2388	2863	5.160641	CGTTTTGGTTTGGGACATCATTAG	58.839	41.667	0.00	0.00	39.30	1.73
2389	2864	4.559704	GCGTTTTGGTTTGGGACATCATTA	60.560	41.667	0.00	0.00	39.30	1.90
2390	2865	3.801983	GCGTTTTGGTTTGGGACATCATT	60.802	43.478	0.00	0.00	39.30	2.57

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.