Multiple sequence alignment - TraesCS5B01G204400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G204400 chr5B 100.000 5786 0 0 1 5786 372169392 372163607 0.000000e+00 10685.0
1 TraesCS5B01G204400 chr5B 94.258 1846 101 5 2980 4820 368720362 368722207 0.000000e+00 2817.0
2 TraesCS5B01G204400 chr5B 85.909 809 67 15 141 929 368694414 368695195 0.000000e+00 819.0
3 TraesCS5B01G204400 chr5B 85.899 695 57 19 1707 2390 368697611 368698275 0.000000e+00 702.0
4 TraesCS5B01G204400 chr5B 90.462 346 16 10 988 1322 368695308 368695647 1.910000e-119 440.0
5 TraesCS5B01G204400 chr5B 95.149 268 9 3 1433 1697 368697359 368697625 2.490000e-113 420.0
6 TraesCS5B01G204400 chr5A 92.589 2793 170 20 2064 4824 415571053 415568266 0.000000e+00 3976.0
7 TraesCS5B01G204400 chr5A 91.416 2423 156 22 2427 4824 413235202 413237597 0.000000e+00 3275.0
8 TraesCS5B01G204400 chr5A 85.880 1296 84 51 450 1697 415572585 415571341 0.000000e+00 1288.0
9 TraesCS5B01G204400 chr5A 85.384 821 75 23 145 933 413231201 413232008 0.000000e+00 809.0
10 TraesCS5B01G204400 chr5A 87.169 717 41 26 984 1689 413232104 413232780 0.000000e+00 767.0
11 TraesCS5B01G204400 chr5A 92.542 295 14 4 1715 2009 413232774 413233060 3.230000e-112 416.0
12 TraesCS5B01G204400 chr5A 84.758 433 40 14 2018 2431 413233150 413233575 1.500000e-110 411.0
13 TraesCS5B01G204400 chr5A 90.106 283 11 6 1707 1988 415571355 415571089 9.220000e-93 351.0
14 TraesCS5B01G204400 chr5A 88.176 296 27 5 4907 5197 413237596 413237888 4.290000e-91 346.0
15 TraesCS5B01G204400 chr5A 94.318 176 6 3 128 300 415573448 415573274 3.440000e-67 267.0
16 TraesCS5B01G204400 chr5A 100.000 28 0 0 2053 2080 415571076 415571049 1.000000e-02 52.8
17 TraesCS5B01G204400 chr5D 92.688 2407 156 9 2427 4824 318886217 318888612 0.000000e+00 3452.0
18 TraesCS5B01G204400 chr5D 94.359 1365 65 4 3462 4824 321378448 321377094 0.000000e+00 2084.0
19 TraesCS5B01G204400 chr5D 83.641 1626 125 60 126 1689 321386971 321385425 0.000000e+00 1399.0
20 TraesCS5B01G204400 chr5D 90.106 849 52 15 2045 2870 321385172 321384333 0.000000e+00 1074.0
21 TraesCS5B01G204400 chr5D 95.238 588 17 5 5208 5786 503217205 503216620 0.000000e+00 920.0
22 TraesCS5B01G204400 chr5D 90.554 614 35 10 1707 2317 318884391 318884984 0.000000e+00 791.0
23 TraesCS5B01G204400 chr5D 95.122 492 24 0 2973 3464 321383916 321383425 0.000000e+00 776.0
24 TraesCS5B01G204400 chr5D 83.955 804 71 24 141 929 318882867 318883627 0.000000e+00 717.0
25 TraesCS5B01G204400 chr5D 91.061 358 12 11 988 1326 318883743 318884099 3.160000e-127 466.0
26 TraesCS5B01G204400 chr5D 93.976 249 13 2 1449 1697 318884159 318884405 5.470000e-100 375.0
27 TraesCS5B01G204400 chr5D 93.902 246 11 1 1743 1988 321385411 321385170 9.160000e-98 368.0
28 TraesCS5B01G204400 chr5D 87.895 190 8 10 4907 5096 321377095 321376921 5.870000e-50 209.0
29 TraesCS5B01G204400 chr5D 88.060 134 13 3 1 132 344470219 344470351 7.760000e-34 156.0
30 TraesCS5B01G204400 chrUn 95.408 588 16 5 5208 5786 396206373 396206958 0.000000e+00 926.0
31 TraesCS5B01G204400 chrUn 95.246 589 16 6 5208 5786 93410643 93411229 0.000000e+00 922.0
32 TraesCS5B01G204400 chrUn 94.907 589 18 6 5208 5786 216519615 216520201 0.000000e+00 911.0
33 TraesCS5B01G204400 chrUn 85.984 371 29 15 1048 1407 480390217 480389859 5.470000e-100 375.0
34 TraesCS5B01G204400 chr7D 95.246 589 16 6 5208 5786 231547580 231546994 0.000000e+00 922.0
35 TraesCS5B01G204400 chr7D 76.737 950 167 26 3517 4424 617823268 617822331 1.130000e-131 481.0
36 TraesCS5B01G204400 chr7D 85.549 173 13 8 1064 1234 617824520 617824358 2.770000e-38 171.0
37 TraesCS5B01G204400 chr6D 95.076 589 17 6 5208 5786 168253913 168253327 0.000000e+00 917.0
38 TraesCS5B01G204400 chr6D 95.068 588 18 5 5208 5786 168250527 168249942 0.000000e+00 915.0
39 TraesCS5B01G204400 chr6D 89.394 66 6 1 5131 5195 88873777 88873712 1.340000e-11 82.4
40 TraesCS5B01G204400 chr2D 94.907 589 18 6 5208 5786 272794906 272795492 0.000000e+00 911.0
41 TraesCS5B01G204400 chr6A 94.889 587 20 4 5208 5786 260117294 260117878 0.000000e+00 909.0
42 TraesCS5B01G204400 chr6A 89.313 131 10 2 1 127 165315618 165315748 1.670000e-35 161.0
43 TraesCS5B01G204400 chr6A 89.062 128 13 1 1 127 121469469 121469342 2.160000e-34 158.0
44 TraesCS5B01G204400 chr6A 88.550 131 11 3 1 127 83992191 83992061 7.760000e-34 156.0
45 TraesCS5B01G204400 chr7A 78.280 930 153 24 3535 4424 711598896 711599816 2.360000e-153 553.0
46 TraesCS5B01G204400 chr7A 86.420 162 12 6 1074 1235 711597700 711597851 9.970000e-38 169.0
47 TraesCS5B01G204400 chr7A 86.719 128 17 0 1838 1965 711598147 711598274 6.040000e-30 143.0
48 TraesCS5B01G204400 chr7A 94.565 92 4 1 4823 4914 134734119 134734029 2.170000e-29 141.0
49 TraesCS5B01G204400 chr4A 91.459 281 19 3 4549 4824 70976050 70975770 1.180000e-101 381.0
50 TraesCS5B01G204400 chr4A 89.811 265 21 5 4931 5192 70964832 70964571 9.290000e-88 335.0
51 TraesCS5B01G204400 chr4A 89.147 129 12 2 1 127 46252708 46252836 6.000000e-35 159.0
52 TraesCS5B01G204400 chr4A 89.147 129 12 2 1 127 58188568 58188440 6.000000e-35 159.0
53 TraesCS5B01G204400 chr7B 85.549 173 13 8 1064 1234 712080324 712080162 2.770000e-38 171.0
54 TraesCS5B01G204400 chr7B 91.919 99 6 2 4823 4920 430307413 430307316 2.810000e-28 137.0
55 TraesCS5B01G204400 chr7B 89.091 110 12 0 2172 2281 711888595 711888704 2.810000e-28 137.0
56 TraesCS5B01G204400 chr7B 87.826 115 14 0 2168 2282 712079614 712079500 1.010000e-27 135.0
57 TraesCS5B01G204400 chr7B 91.089 101 5 4 4823 4921 273296508 273296606 3.640000e-27 134.0
58 TraesCS5B01G204400 chr2A 89.231 130 11 2 1 127 369580755 369580884 6.000000e-35 159.0
59 TraesCS5B01G204400 chr2A 89.231 130 11 2 1 127 644494142 644494013 6.000000e-35 159.0
60 TraesCS5B01G204400 chr2A 96.512 86 3 0 4823 4908 279487508 279487423 6.040000e-30 143.0
61 TraesCS5B01G204400 chr1A 89.147 129 12 2 1 127 96848910 96849038 6.000000e-35 159.0
62 TraesCS5B01G204400 chr1A 96.512 86 3 0 4823 4908 342386763 342386678 6.040000e-30 143.0
63 TraesCS5B01G204400 chr3A 97.674 86 2 0 4823 4908 532672179 532672094 1.300000e-31 148.0
64 TraesCS5B01G204400 chr3A 89.423 104 9 2 4822 4923 19865462 19865565 4.710000e-26 130.0
65 TraesCS5B01G204400 chr1D 91.837 98 7 1 4816 4913 467858167 467858263 1.010000e-27 135.0
66 TraesCS5B01G204400 chr4B 89.423 104 10 1 4806 4908 603516361 603516258 4.710000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G204400 chr5B 372163607 372169392 5785 True 10685.000000 10685 100.000000 1 5786 1 chr5B.!!$R1 5785
1 TraesCS5B01G204400 chr5B 368720362 368722207 1845 False 2817.000000 2817 94.258000 2980 4820 1 chr5B.!!$F1 1840
2 TraesCS5B01G204400 chr5B 368694414 368698275 3861 False 595.250000 819 89.354750 141 2390 4 chr5B.!!$F2 2249
3 TraesCS5B01G204400 chr5A 415568266 415573448 5182 True 1186.960000 3976 92.578600 128 4824 5 chr5A.!!$R1 4696
4 TraesCS5B01G204400 chr5A 413231201 413237888 6687 False 1004.000000 3275 88.240833 145 5197 6 chr5A.!!$F1 5052
5 TraesCS5B01G204400 chr5D 318882867 318888612 5745 False 1160.200000 3452 90.446800 141 4824 5 chr5D.!!$F2 4683
6 TraesCS5B01G204400 chr5D 321376921 321378448 1527 True 1146.500000 2084 91.127000 3462 5096 2 chr5D.!!$R2 1634
7 TraesCS5B01G204400 chr5D 503216620 503217205 585 True 920.000000 920 95.238000 5208 5786 1 chr5D.!!$R1 578
8 TraesCS5B01G204400 chr5D 321383425 321386971 3546 True 904.250000 1399 90.692750 126 3464 4 chr5D.!!$R3 3338
9 TraesCS5B01G204400 chrUn 396206373 396206958 585 False 926.000000 926 95.408000 5208 5786 1 chrUn.!!$F3 578
10 TraesCS5B01G204400 chrUn 93410643 93411229 586 False 922.000000 922 95.246000 5208 5786 1 chrUn.!!$F1 578
11 TraesCS5B01G204400 chrUn 216519615 216520201 586 False 911.000000 911 94.907000 5208 5786 1 chrUn.!!$F2 578
12 TraesCS5B01G204400 chr7D 231546994 231547580 586 True 922.000000 922 95.246000 5208 5786 1 chr7D.!!$R1 578
13 TraesCS5B01G204400 chr7D 617822331 617824520 2189 True 326.000000 481 81.143000 1064 4424 2 chr7D.!!$R2 3360
14 TraesCS5B01G204400 chr6D 168249942 168253913 3971 True 916.000000 917 95.072000 5208 5786 2 chr6D.!!$R2 578
15 TraesCS5B01G204400 chr2D 272794906 272795492 586 False 911.000000 911 94.907000 5208 5786 1 chr2D.!!$F1 578
16 TraesCS5B01G204400 chr6A 260117294 260117878 584 False 909.000000 909 94.889000 5208 5786 1 chr6A.!!$F2 578
17 TraesCS5B01G204400 chr7A 711597700 711599816 2116 False 288.333333 553 83.806333 1074 4424 3 chr7A.!!$F1 3350

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
929 1599 0.167470 CCGCGTCGTATCCGTATCAT 59.833 55.0 4.92 0.0 35.01 2.45 F
1740 4147 0.035458 GTCCACACCAACTCCTCCAG 59.965 60.0 0.00 0.0 0.00 3.86 F
2013 4424 0.034896 CCTGCGGTAGGTTCACACTT 59.965 55.0 3.69 0.0 42.00 3.16 F
3355 8048 0.456312 GAACTCGACGCCATTCTCGT 60.456 55.0 0.00 0.0 43.49 4.18 F
3863 8556 0.175989 GCTTAGAGGACCGTCTTGGG 59.824 60.0 0.00 0.0 44.64 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1980 4391 0.034059 CGCAGGACAAAGAGAGTGGT 59.966 55.0 0.00 0.00 0.0 4.16 R
2710 7029 0.036022 TGTGATCCGTGGCATTGTCA 59.964 50.0 0.00 0.00 0.0 3.58 R
3392 8085 0.323816 AGTCGGTGATCTGGAGCTCA 60.324 55.0 17.19 0.61 0.0 4.26 R
4755 9505 0.617820 ACCGATGGAAGGTGCTAGGT 60.618 55.0 0.00 0.00 41.1 3.08 R
5404 10169 0.695462 TGCTAGATGCCTGGGACCAT 60.695 55.0 0.00 0.00 42.0 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.824305 ACTCCCACAAATATATAATGCAGC 57.176 37.500 0.00 0.00 0.00 5.25
27 28 6.306199 ACTCCCACAAATATATAATGCAGCA 58.694 36.000 0.00 0.00 0.00 4.41
28 29 6.777091 ACTCCCACAAATATATAATGCAGCAA 59.223 34.615 0.00 0.00 0.00 3.91
29 30 6.980593 TCCCACAAATATATAATGCAGCAAC 58.019 36.000 0.00 0.00 0.00 4.17
30 31 6.548993 TCCCACAAATATATAATGCAGCAACA 59.451 34.615 0.00 0.00 0.00 3.33
31 32 7.069208 TCCCACAAATATATAATGCAGCAACAA 59.931 33.333 0.00 0.00 0.00 2.83
32 33 7.710044 CCCACAAATATATAATGCAGCAACAAA 59.290 33.333 0.00 0.00 0.00 2.83
33 34 9.096160 CCACAAATATATAATGCAGCAACAAAA 57.904 29.630 0.00 0.00 0.00 2.44
70 71 9.434420 AAAGAAAAATCACAAACAGAATGAACA 57.566 25.926 0.00 0.00 39.69 3.18
71 72 9.603921 AAGAAAAATCACAAACAGAATGAACAT 57.396 25.926 0.00 0.00 39.69 2.71
72 73 9.252962 AGAAAAATCACAAACAGAATGAACATC 57.747 29.630 0.00 0.00 39.69 3.06
73 74 8.945481 AAAAATCACAAACAGAATGAACATCA 57.055 26.923 0.00 0.00 39.69 3.07
74 75 8.583810 AAAATCACAAACAGAATGAACATCAG 57.416 30.769 0.00 0.00 39.69 2.90
75 76 5.112220 TCACAAACAGAATGAACATCAGC 57.888 39.130 0.00 0.00 39.69 4.26
76 77 4.823442 TCACAAACAGAATGAACATCAGCT 59.177 37.500 0.00 0.00 39.69 4.24
77 78 5.300034 TCACAAACAGAATGAACATCAGCTT 59.700 36.000 0.00 0.00 39.69 3.74
78 79 6.486320 TCACAAACAGAATGAACATCAGCTTA 59.514 34.615 0.00 0.00 39.69 3.09
79 80 7.013178 TCACAAACAGAATGAACATCAGCTTAA 59.987 33.333 0.00 0.00 39.69 1.85
80 81 7.648908 CACAAACAGAATGAACATCAGCTTAAA 59.351 33.333 0.00 0.00 39.69 1.52
81 82 8.362639 ACAAACAGAATGAACATCAGCTTAAAT 58.637 29.630 0.00 0.00 39.69 1.40
82 83 8.644619 CAAACAGAATGAACATCAGCTTAAATG 58.355 33.333 0.00 0.00 39.69 2.32
83 84 7.458409 ACAGAATGAACATCAGCTTAAATGT 57.542 32.000 1.24 1.24 39.69 2.71
84 85 7.310664 ACAGAATGAACATCAGCTTAAATGTG 58.689 34.615 6.85 0.00 39.69 3.21
85 86 7.175467 ACAGAATGAACATCAGCTTAAATGTGA 59.825 33.333 6.85 0.00 39.69 3.58
86 87 7.484007 CAGAATGAACATCAGCTTAAATGTGAC 59.516 37.037 6.85 5.86 39.69 3.67
87 88 6.822667 ATGAACATCAGCTTAAATGTGACA 57.177 33.333 6.85 9.93 36.28 3.58
88 89 6.822667 TGAACATCAGCTTAAATGTGACAT 57.177 33.333 6.85 0.00 36.28 3.06
89 90 7.920160 TGAACATCAGCTTAAATGTGACATA 57.080 32.000 0.00 0.00 36.28 2.29
90 91 8.334263 TGAACATCAGCTTAAATGTGACATAA 57.666 30.769 0.00 0.00 36.28 1.90
91 92 8.959548 TGAACATCAGCTTAAATGTGACATAAT 58.040 29.630 0.00 0.00 36.28 1.28
92 93 9.793252 GAACATCAGCTTAAATGTGACATAATT 57.207 29.630 0.00 0.00 36.28 1.40
172 176 1.401552 CGTCCAATGCGACCATCATTT 59.598 47.619 0.00 0.00 32.30 2.32
173 177 2.539547 CGTCCAATGCGACCATCATTTC 60.540 50.000 0.00 0.00 32.30 2.17
182 186 2.033407 CGACCATCATTTCAAGCGCTAG 60.033 50.000 12.05 0.00 0.00 3.42
184 188 2.092968 ACCATCATTTCAAGCGCTAGGA 60.093 45.455 12.05 9.31 0.00 2.94
327 915 2.939103 AGGCAAGTCGAAGCATATTCAC 59.061 45.455 7.86 0.00 0.00 3.18
408 999 1.392589 ACTGGCATGCTAATTTCCCG 58.607 50.000 18.92 0.00 0.00 5.14
473 1072 1.679680 GTGGGATTCATGTGATGCAGG 59.320 52.381 0.00 0.00 0.00 4.85
486 1085 2.157738 GATGCAGGCCCAAGATGTATC 58.842 52.381 0.00 1.13 0.00 2.24
487 1086 0.918258 TGCAGGCCCAAGATGTATCA 59.082 50.000 0.00 0.00 0.00 2.15
488 1087 1.496001 TGCAGGCCCAAGATGTATCAT 59.504 47.619 0.00 0.00 0.00 2.45
508 1119 5.296748 TCATGTATGTGGTGTATTCGATGG 58.703 41.667 0.00 0.00 0.00 3.51
511 1127 6.658188 TGTATGTGGTGTATTCGATGGATA 57.342 37.500 0.00 0.00 0.00 2.59
521 1138 7.228706 GGTGTATTCGATGGATAATTTCCTTGT 59.771 37.037 7.78 0.00 45.68 3.16
554 1184 2.073117 TGCATGTGTGTACGGTGTAG 57.927 50.000 0.00 0.00 0.00 2.74
565 1195 2.858158 GGTGTAGCGACGTTTGGC 59.142 61.111 0.00 0.00 0.00 4.52
567 1197 2.357760 TGTAGCGACGTTTGGCCC 60.358 61.111 0.00 0.00 0.00 5.80
589 1224 1.411977 TGTTGCACAGTTTGGAATGGG 59.588 47.619 0.00 0.00 37.93 4.00
616 1266 1.135944 GCGAGTTCAAACCTAAGCAGC 60.136 52.381 0.00 0.00 0.00 5.25
659 1315 2.026822 AGGTCTGGTCAACATGATCCAC 60.027 50.000 0.00 0.00 0.00 4.02
661 1317 2.026822 GTCTGGTCAACATGATCCACCT 60.027 50.000 0.00 0.00 0.00 4.00
663 1319 3.197766 TCTGGTCAACATGATCCACCTAC 59.802 47.826 0.00 0.00 0.00 3.18
721 1377 0.475632 TGCCCGGAATATCCCTCCAT 60.476 55.000 0.73 0.00 31.13 3.41
781 1437 0.323629 TTCCGATGGGTGTTGTCCTC 59.676 55.000 0.00 0.00 33.83 3.71
859 1523 4.038883 AGCAAAGTAACTAGTTCCAGTCGT 59.961 41.667 12.39 0.00 0.00 4.34
872 1536 2.025226 TCCAGTCGTACTCCAGGAAGAT 60.025 50.000 0.00 0.00 0.00 2.40
904 1574 0.752376 CTACCTCGGTGTCCCTCTCC 60.752 65.000 0.00 0.00 0.00 3.71
912 1582 2.123640 GTCCCTCTCCCTCTCCCG 60.124 72.222 0.00 0.00 0.00 5.14
929 1599 0.167470 CCGCGTCGTATCCGTATCAT 59.833 55.000 4.92 0.00 35.01 2.45
1242 1995 2.080286 ACATGAGTAAGCACACGACC 57.920 50.000 0.00 0.00 0.00 4.79
1254 2007 2.673833 CACACGACCTGTTTACCTCTC 58.326 52.381 0.00 0.00 0.00 3.20
1258 2011 1.477295 CGACCTGTTTACCTCTCCTCC 59.523 57.143 0.00 0.00 0.00 4.30
1259 2012 1.832366 GACCTGTTTACCTCTCCTCCC 59.168 57.143 0.00 0.00 0.00 4.30
1263 2016 3.267031 CCTGTTTACCTCTCCTCCCAAAT 59.733 47.826 0.00 0.00 0.00 2.32
1267 2020 5.191426 GTTTACCTCTCCTCCCAAATTACC 58.809 45.833 0.00 0.00 0.00 2.85
1273 2027 4.870636 TCTCCTCCCAAATTACCGTACTA 58.129 43.478 0.00 0.00 0.00 1.82
1316 2076 1.002868 AGTGCGCTCAAGCTCCAAT 60.003 52.632 9.73 0.00 39.32 3.16
1317 2077 1.023513 AGTGCGCTCAAGCTCCAATC 61.024 55.000 9.73 0.00 39.32 2.67
1318 2078 1.003476 TGCGCTCAAGCTCCAATCA 60.003 52.632 9.73 0.00 39.32 2.57
1319 2079 0.606130 TGCGCTCAAGCTCCAATCAA 60.606 50.000 9.73 0.00 39.32 2.57
1320 2080 0.523072 GCGCTCAAGCTCCAATCAAA 59.477 50.000 0.00 0.00 39.32 2.69
1321 2081 1.068333 GCGCTCAAGCTCCAATCAAAA 60.068 47.619 0.00 0.00 39.32 2.44
1322 2082 2.860062 CGCTCAAGCTCCAATCAAAAG 58.140 47.619 0.00 0.00 39.32 2.27
1323 2083 2.603953 GCTCAAGCTCCAATCAAAAGC 58.396 47.619 0.00 0.00 38.21 3.51
1342 3741 1.815408 GCTCAAAACTCCCTGCACTGA 60.815 52.381 0.00 0.00 0.00 3.41
1358 3757 5.743467 TGCACTGAAAAATTACACGTACTG 58.257 37.500 0.00 0.00 0.00 2.74
1361 3760 6.347079 GCACTGAAAAATTACACGTACTGCTA 60.347 38.462 0.00 0.00 0.00 3.49
1362 3761 7.227461 CACTGAAAAATTACACGTACTGCTAG 58.773 38.462 0.00 0.00 0.00 3.42
1363 3762 7.115805 CACTGAAAAATTACACGTACTGCTAGA 59.884 37.037 0.00 0.00 0.00 2.43
1364 3763 7.328737 ACTGAAAAATTACACGTACTGCTAGAG 59.671 37.037 0.00 0.00 0.00 2.43
1392 3796 6.935240 TTAGGAGGTCAATTTCTCTTCTGA 57.065 37.500 0.00 0.00 0.00 3.27
1402 3806 8.787852 GTCAATTTCTCTTCTGACCATTTTAGT 58.212 33.333 0.00 0.00 33.57 2.24
1403 3807 9.354673 TCAATTTCTCTTCTGACCATTTTAGTT 57.645 29.630 0.00 0.00 0.00 2.24
1404 3808 9.403110 CAATTTCTCTTCTGACCATTTTAGTTG 57.597 33.333 0.00 0.00 0.00 3.16
1406 3810 7.730364 TTCTCTTCTGACCATTTTAGTTGTC 57.270 36.000 0.00 0.00 0.00 3.18
1407 3811 7.067496 TCTCTTCTGACCATTTTAGTTGTCT 57.933 36.000 0.00 0.00 0.00 3.41
1410 3814 5.825593 TCTGACCATTTTAGTTGTCTCCT 57.174 39.130 0.00 0.00 0.00 3.69
1411 3815 5.551233 TCTGACCATTTTAGTTGTCTCCTG 58.449 41.667 0.00 0.00 0.00 3.86
1412 3816 5.071788 TCTGACCATTTTAGTTGTCTCCTGT 59.928 40.000 0.00 0.00 0.00 4.00
1413 3817 5.690865 TGACCATTTTAGTTGTCTCCTGTT 58.309 37.500 0.00 0.00 0.00 3.16
1414 3818 5.763204 TGACCATTTTAGTTGTCTCCTGTTC 59.237 40.000 0.00 0.00 0.00 3.18
1415 3819 4.755123 ACCATTTTAGTTGTCTCCTGTTCG 59.245 41.667 0.00 0.00 0.00 3.95
1416 3820 4.378459 CCATTTTAGTTGTCTCCTGTTCGC 60.378 45.833 0.00 0.00 0.00 4.70
1417 3821 3.746045 TTTAGTTGTCTCCTGTTCGCT 57.254 42.857 0.00 0.00 0.00 4.93
1418 3822 3.746045 TTAGTTGTCTCCTGTTCGCTT 57.254 42.857 0.00 0.00 0.00 4.68
1419 3823 2.156343 AGTTGTCTCCTGTTCGCTTC 57.844 50.000 0.00 0.00 0.00 3.86
1420 3824 1.412710 AGTTGTCTCCTGTTCGCTTCA 59.587 47.619 0.00 0.00 0.00 3.02
1421 3825 2.037772 AGTTGTCTCCTGTTCGCTTCAT 59.962 45.455 0.00 0.00 0.00 2.57
1422 3826 2.084610 TGTCTCCTGTTCGCTTCATG 57.915 50.000 0.00 0.00 0.00 3.07
1423 3827 1.618343 TGTCTCCTGTTCGCTTCATGA 59.382 47.619 0.00 0.00 0.00 3.07
1424 3828 2.037121 TGTCTCCTGTTCGCTTCATGAA 59.963 45.455 8.12 8.12 0.00 2.57
1425 3829 3.067106 GTCTCCTGTTCGCTTCATGAAA 58.933 45.455 9.88 0.00 0.00 2.69
1426 3830 3.067106 TCTCCTGTTCGCTTCATGAAAC 58.933 45.455 9.88 4.01 0.00 2.78
1427 3831 3.070018 CTCCTGTTCGCTTCATGAAACT 58.930 45.455 9.88 0.00 0.00 2.66
1428 3832 3.067106 TCCTGTTCGCTTCATGAAACTC 58.933 45.455 9.88 1.14 0.00 3.01
1429 3833 3.070018 CCTGTTCGCTTCATGAAACTCT 58.930 45.455 9.88 0.00 0.00 3.24
1430 3834 4.021456 TCCTGTTCGCTTCATGAAACTCTA 60.021 41.667 9.88 0.00 0.00 2.43
1431 3835 4.328440 CCTGTTCGCTTCATGAAACTCTAG 59.672 45.833 9.88 4.32 0.00 2.43
1696 4103 2.836944 CGGGTTCGTTCCTTCCTTC 58.163 57.895 0.00 0.00 0.00 3.46
1697 4104 0.672711 CGGGTTCGTTCCTTCCTTCC 60.673 60.000 0.00 0.00 0.00 3.46
1698 4105 0.691332 GGGTTCGTTCCTTCCTTCCT 59.309 55.000 0.00 0.00 0.00 3.36
1699 4106 1.073444 GGGTTCGTTCCTTCCTTCCTT 59.927 52.381 0.00 0.00 0.00 3.36
1700 4107 2.424557 GGTTCGTTCCTTCCTTCCTTC 58.575 52.381 0.00 0.00 0.00 3.46
1701 4108 2.424557 GTTCGTTCCTTCCTTCCTTCC 58.575 52.381 0.00 0.00 0.00 3.46
1702 4109 2.025636 TCGTTCCTTCCTTCCTTCCT 57.974 50.000 0.00 0.00 0.00 3.36
1703 4110 2.335933 TCGTTCCTTCCTTCCTTCCTT 58.664 47.619 0.00 0.00 0.00 3.36
1704 4111 2.302157 TCGTTCCTTCCTTCCTTCCTTC 59.698 50.000 0.00 0.00 0.00 3.46
1705 4112 2.615747 CGTTCCTTCCTTCCTTCCTTCC 60.616 54.545 0.00 0.00 0.00 3.46
1706 4113 2.645297 GTTCCTTCCTTCCTTCCTTCCT 59.355 50.000 0.00 0.00 0.00 3.36
1707 4114 3.005529 TCCTTCCTTCCTTCCTTCCTT 57.994 47.619 0.00 0.00 0.00 3.36
1708 4115 2.913617 TCCTTCCTTCCTTCCTTCCTTC 59.086 50.000 0.00 0.00 0.00 3.46
1709 4116 2.025793 CCTTCCTTCCTTCCTTCCTTCC 60.026 54.545 0.00 0.00 0.00 3.46
1734 4141 0.391597 TCCTTCGTCCACACCAACTC 59.608 55.000 0.00 0.00 0.00 3.01
1735 4142 0.602905 CCTTCGTCCACACCAACTCC 60.603 60.000 0.00 0.00 0.00 3.85
1736 4143 0.393077 CTTCGTCCACACCAACTCCT 59.607 55.000 0.00 0.00 0.00 3.69
1737 4144 0.391597 TTCGTCCACACCAACTCCTC 59.608 55.000 0.00 0.00 0.00 3.71
1738 4145 1.004918 CGTCCACACCAACTCCTCC 60.005 63.158 0.00 0.00 0.00 4.30
1739 4146 1.754380 CGTCCACACCAACTCCTCCA 61.754 60.000 0.00 0.00 0.00 3.86
1740 4147 0.035458 GTCCACACCAACTCCTCCAG 59.965 60.000 0.00 0.00 0.00 3.86
1741 4148 0.399949 TCCACACCAACTCCTCCAGT 60.400 55.000 0.00 0.00 36.64 4.00
1793 4204 1.067283 CGATCCTCATTCTGATCCCCG 60.067 57.143 0.00 0.00 35.09 5.73
1798 4209 1.889105 CATTCTGATCCCCGCCACG 60.889 63.158 0.00 0.00 0.00 4.94
1971 4382 2.036428 GATACACCAGGTACCCGCCC 62.036 65.000 8.74 0.00 34.07 6.13
1979 4390 2.364710 GTACCCGCCCACCTACCT 60.365 66.667 0.00 0.00 0.00 3.08
1980 4391 1.076044 GTACCCGCCCACCTACCTA 60.076 63.158 0.00 0.00 0.00 3.08
1981 4392 1.076044 TACCCGCCCACCTACCTAC 60.076 63.158 0.00 0.00 0.00 3.18
1982 4393 2.588029 TACCCGCCCACCTACCTACC 62.588 65.000 0.00 0.00 0.00 3.18
1991 4402 3.442076 CCACCTACCTACCACTCTCTTT 58.558 50.000 0.00 0.00 0.00 2.52
2013 4424 0.034896 CCTGCGGTAGGTTCACACTT 59.965 55.000 3.69 0.00 42.00 3.16
2014 4425 1.429463 CTGCGGTAGGTTCACACTTC 58.571 55.000 0.00 0.00 0.00 3.01
2015 4426 0.753867 TGCGGTAGGTTCACACTTCA 59.246 50.000 0.00 0.00 0.00 3.02
2016 4427 1.145803 GCGGTAGGTTCACACTTCAC 58.854 55.000 0.00 0.00 0.00 3.18
2025 4517 2.800544 GTTCACACTTCACACGTAGCAT 59.199 45.455 0.00 0.00 0.00 3.79
2030 4522 3.253230 CACTTCACACGTAGCATGATGA 58.747 45.455 0.00 0.00 0.00 2.92
2031 4523 3.305361 CACTTCACACGTAGCATGATGAG 59.695 47.826 0.00 0.00 0.00 2.90
2032 4524 3.193479 ACTTCACACGTAGCATGATGAGA 59.807 43.478 0.00 0.00 0.00 3.27
2033 4525 3.866883 TCACACGTAGCATGATGAGAA 57.133 42.857 0.00 0.00 0.00 2.87
2165 4700 3.280197 TGTGATGGATATGGTGTGTGG 57.720 47.619 0.00 0.00 0.00 4.17
2166 4701 2.843113 TGTGATGGATATGGTGTGTGGA 59.157 45.455 0.00 0.00 0.00 4.02
2294 4836 9.755122 TCTGCACTAGGTACATATATATGTCTT 57.245 33.333 27.61 18.28 45.11 3.01
2334 4879 3.056250 CAGTCCACTGCTTCACATAGAGT 60.056 47.826 0.00 0.00 37.15 3.24
2358 4905 5.726980 TGCCTAGAAAAATGCTGTTTGAT 57.273 34.783 0.00 0.00 0.00 2.57
2360 4907 6.855836 TGCCTAGAAAAATGCTGTTTGATAG 58.144 36.000 0.00 0.00 0.00 2.08
2373 4920 3.695060 TGTTTGATAGAGAGAGGACCGAC 59.305 47.826 0.00 0.00 0.00 4.79
2638 6957 2.665185 GGTGACGGCGAGCTGTTT 60.665 61.111 16.62 0.00 35.39 2.83
2669 6988 3.559657 GACTCGCCCGATCCGATGG 62.560 68.421 0.00 0.00 33.83 3.51
2673 6992 3.546543 GCCCGATCCGATGGTGGA 61.547 66.667 0.00 0.00 43.58 4.02
2680 6999 4.530857 CCGATGGTGGAGGCGTCC 62.531 72.222 18.69 18.69 44.24 4.79
2710 7029 3.374402 CCGAGCAGGGACGACAGT 61.374 66.667 0.00 0.00 35.97 3.55
2732 7051 1.750399 AATGCCACGGATCACAGCC 60.750 57.895 0.00 0.00 0.00 4.85
2761 7080 4.554036 GGTCATGAGGGAGCCGCC 62.554 72.222 0.00 0.00 0.00 6.13
2916 7249 9.325198 GTGGTGAAATTTCCTAGAAAAACAATT 57.675 29.630 15.48 0.00 0.00 2.32
2976 7314 2.542597 TCATGTCGGCGTGGTATAAAC 58.457 47.619 9.78 0.00 32.65 2.01
2978 7316 1.999048 TGTCGGCGTGGTATAAACTG 58.001 50.000 6.85 0.00 0.00 3.16
3004 7691 6.303054 TCTTGTATGATGGTTTTGTCAGGAA 58.697 36.000 0.00 0.00 0.00 3.36
3095 7782 1.226323 CACGAGGCGTACGAAGAGG 60.226 63.158 21.65 5.85 38.32 3.69
3169 7862 8.654485 TGGTAAGTTTCTGAATACAGTAGGTA 57.346 34.615 0.00 0.00 43.81 3.08
3170 7863 8.526147 TGGTAAGTTTCTGAATACAGTAGGTAC 58.474 37.037 0.00 0.00 43.81 3.34
3256 7949 2.493973 GGACGCAGAGAGCTCCTG 59.506 66.667 21.31 21.31 42.61 3.86
3296 7989 1.047801 GGAAGGAGATGGAGGAGAGC 58.952 60.000 0.00 0.00 0.00 4.09
3355 8048 0.456312 GAACTCGACGCCATTCTCGT 60.456 55.000 0.00 0.00 43.49 4.18
3559 8252 4.377738 CGATGGTGATCAAAGTGTGAGTTG 60.378 45.833 0.00 0.00 40.43 3.16
3705 8398 2.456119 GCCGTCAAGGTGATCTGCG 61.456 63.158 0.00 0.00 43.70 5.18
3779 8472 2.275380 GGCGAGGCACCCAAACATT 61.275 57.895 0.00 0.00 0.00 2.71
3863 8556 0.175989 GCTTAGAGGACCGTCTTGGG 59.824 60.000 0.00 0.00 44.64 4.12
3923 8628 1.372004 CGCGTACCGAACCTGTTCA 60.372 57.895 10.38 0.00 39.46 3.18
3986 8694 1.071471 CCGGCCAGCGAATATCCTT 59.929 57.895 2.24 0.00 0.00 3.36
4022 8745 4.441695 TCCTCCAGCAAGCTCGCG 62.442 66.667 0.00 0.00 36.85 5.87
4048 8771 2.981302 CATGCCTGGTCTCGTGGA 59.019 61.111 0.00 0.00 0.00 4.02
4247 8979 4.394712 CCCTGGCACGAGGTGGTC 62.395 72.222 0.00 0.00 33.64 4.02
4502 9237 3.185188 CGATACTCAAGGTATGCACATGC 59.815 47.826 0.00 0.00 40.82 4.06
4623 9373 1.580942 CGACGGGTTCACCTACGAA 59.419 57.895 0.00 0.00 37.53 3.85
4782 9532 1.211949 ACCTTCCATCGGTACCAATGG 59.788 52.381 24.02 24.02 43.22 3.16
4811 9562 5.241506 TGAGAATTCAGATTGTTCCAACCAC 59.758 40.000 8.44 0.00 0.00 4.16
4824 9579 5.106475 TGTTCCAACCACGATTAGCATTTAC 60.106 40.000 0.00 0.00 0.00 2.01
4825 9580 4.839121 TCCAACCACGATTAGCATTTACT 58.161 39.130 0.00 0.00 0.00 2.24
4826 9581 4.873827 TCCAACCACGATTAGCATTTACTC 59.126 41.667 0.00 0.00 0.00 2.59
4827 9582 4.035208 CCAACCACGATTAGCATTTACTCC 59.965 45.833 0.00 0.00 0.00 3.85
4828 9583 3.805207 ACCACGATTAGCATTTACTCCC 58.195 45.455 0.00 0.00 0.00 4.30
4829 9584 3.454812 ACCACGATTAGCATTTACTCCCT 59.545 43.478 0.00 0.00 0.00 4.20
4830 9585 4.058817 CCACGATTAGCATTTACTCCCTC 58.941 47.826 0.00 0.00 0.00 4.30
4831 9586 4.058817 CACGATTAGCATTTACTCCCTCC 58.941 47.826 0.00 0.00 0.00 4.30
4832 9587 3.243771 ACGATTAGCATTTACTCCCTCCG 60.244 47.826 0.00 0.00 0.00 4.63
4833 9588 3.243771 CGATTAGCATTTACTCCCTCCGT 60.244 47.826 0.00 0.00 0.00 4.69
4834 9589 4.704965 GATTAGCATTTACTCCCTCCGTT 58.295 43.478 0.00 0.00 0.00 4.44
4835 9590 4.563140 TTAGCATTTACTCCCTCCGTTT 57.437 40.909 0.00 0.00 0.00 3.60
4836 9591 2.987232 AGCATTTACTCCCTCCGTTTC 58.013 47.619 0.00 0.00 0.00 2.78
4837 9592 2.304761 AGCATTTACTCCCTCCGTTTCA 59.695 45.455 0.00 0.00 0.00 2.69
4838 9593 3.078837 GCATTTACTCCCTCCGTTTCAA 58.921 45.455 0.00 0.00 0.00 2.69
4839 9594 3.504520 GCATTTACTCCCTCCGTTTCAAA 59.495 43.478 0.00 0.00 0.00 2.69
4840 9595 4.022676 GCATTTACTCCCTCCGTTTCAAAA 60.023 41.667 0.00 0.00 0.00 2.44
4841 9596 5.336451 GCATTTACTCCCTCCGTTTCAAAAT 60.336 40.000 0.00 0.00 0.00 1.82
4842 9597 6.127842 GCATTTACTCCCTCCGTTTCAAAATA 60.128 38.462 0.00 0.00 0.00 1.40
4843 9598 7.472543 CATTTACTCCCTCCGTTTCAAAATAG 58.527 38.462 0.00 0.00 0.00 1.73
4844 9599 4.903045 ACTCCCTCCGTTTCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
4845 9600 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
4846 9601 5.186198 ACTCCCTCCGTTTCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
4847 9602 5.045869 ACTCCCTCCGTTTCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
4848 9603 5.183228 TCCCTCCGTTTCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
4849 9604 5.045869 TCCCTCCGTTTCAAAATAGATGACT 60.046 40.000 0.00 0.00 0.00 3.41
4850 9605 5.294552 CCCTCCGTTTCAAAATAGATGACTC 59.705 44.000 0.00 0.00 0.00 3.36
4851 9606 5.874810 CCTCCGTTTCAAAATAGATGACTCA 59.125 40.000 0.00 0.00 0.00 3.41
4852 9607 6.371548 CCTCCGTTTCAAAATAGATGACTCAA 59.628 38.462 0.00 0.00 0.00 3.02
4853 9608 7.129109 TCCGTTTCAAAATAGATGACTCAAC 57.871 36.000 0.00 0.00 0.00 3.18
4854 9609 6.934645 TCCGTTTCAAAATAGATGACTCAACT 59.065 34.615 0.00 0.00 0.00 3.16
4855 9610 8.092068 TCCGTTTCAAAATAGATGACTCAACTA 58.908 33.333 0.00 0.00 0.00 2.24
4856 9611 8.883731 CCGTTTCAAAATAGATGACTCAACTAT 58.116 33.333 3.54 3.54 32.22 2.12
4884 9639 8.983702 ACTAACTTTAGTACAAAATTGGGTCA 57.016 30.769 0.00 0.00 41.92 4.02
4885 9640 9.582648 ACTAACTTTAGTACAAAATTGGGTCAT 57.417 29.630 0.00 0.00 41.92 3.06
4887 9642 8.706322 AACTTTAGTACAAAATTGGGTCATCT 57.294 30.769 0.00 0.00 0.00 2.90
4888 9643 9.802039 AACTTTAGTACAAAATTGGGTCATCTA 57.198 29.630 0.00 0.00 0.00 1.98
4889 9644 9.975218 ACTTTAGTACAAAATTGGGTCATCTAT 57.025 29.630 0.00 0.00 0.00 1.98
4898 9653 9.289303 CAAAATTGGGTCATCTATTTTAGAACG 57.711 33.333 0.00 0.00 38.50 3.95
4899 9654 7.568199 AATTGGGTCATCTATTTTAGAACGG 57.432 36.000 0.00 0.00 38.50 4.44
4900 9655 5.943349 TGGGTCATCTATTTTAGAACGGA 57.057 39.130 0.00 0.00 38.50 4.69
4901 9656 5.914033 TGGGTCATCTATTTTAGAACGGAG 58.086 41.667 0.00 0.00 38.50 4.63
4902 9657 5.163343 TGGGTCATCTATTTTAGAACGGAGG 60.163 44.000 0.00 0.00 38.50 4.30
4903 9658 5.070047 GGGTCATCTATTTTAGAACGGAGGA 59.930 44.000 0.00 0.00 38.50 3.71
4904 9659 6.407752 GGGTCATCTATTTTAGAACGGAGGAA 60.408 42.308 0.00 0.00 38.50 3.36
4905 9660 6.702282 GGTCATCTATTTTAGAACGGAGGAAG 59.298 42.308 0.00 0.00 38.50 3.46
4906 9661 7.266400 GTCATCTATTTTAGAACGGAGGAAGT 58.734 38.462 0.00 0.00 38.50 3.01
4907 9662 8.411683 GTCATCTATTTTAGAACGGAGGAAGTA 58.588 37.037 0.00 0.00 38.50 2.24
4911 9666 5.416271 TTTTAGAACGGAGGAAGTAGCAT 57.584 39.130 0.00 0.00 0.00 3.79
4924 9679 3.418684 AGTAGCATGAAAACTTCCCGT 57.581 42.857 0.00 0.00 0.00 5.28
4966 9721 2.314415 TAGGCGCACCCGATTAACCC 62.314 60.000 10.83 0.00 39.21 4.11
5039 9795 2.430694 AGCATTGTCTAGTGTATCGCCA 59.569 45.455 0.00 0.00 0.00 5.69
5058 9814 4.612712 CGCCAATGTGTAAAGTTTCGTGAT 60.613 41.667 0.00 0.00 0.00 3.06
5072 9828 6.603095 AGTTTCGTGATAAAATGACTTCTGC 58.397 36.000 0.00 0.00 0.00 4.26
5161 9921 6.250951 GTGTCGGTTTTGTTTTATTCGTTCAA 59.749 34.615 0.00 0.00 0.00 2.69
5165 9925 8.321716 TCGGTTTTGTTTTATTCGTTCAAAATG 58.678 29.630 0.00 0.00 39.18 2.32
5169 9929 7.721286 TTGTTTTATTCGTTCAAAATGCCAT 57.279 28.000 0.00 0.00 0.00 4.40
5170 9930 7.114882 TGTTTTATTCGTTCAAAATGCCATG 57.885 32.000 0.00 0.00 0.00 3.66
5186 9946 3.317711 TGCCATGAAAGTCATTTTGTCGT 59.682 39.130 0.00 0.00 34.28 4.34
5197 9957 4.798387 GTCATTTTGTCGTGAAACTTTGCT 59.202 37.500 0.00 0.00 31.75 3.91
5198 9958 5.968848 GTCATTTTGTCGTGAAACTTTGCTA 59.031 36.000 0.00 0.00 31.75 3.49
5199 9959 6.140737 GTCATTTTGTCGTGAAACTTTGCTAG 59.859 38.462 0.00 0.00 31.75 3.42
5200 9960 4.545823 TTTGTCGTGAAACTTTGCTAGG 57.454 40.909 0.00 0.00 31.75 3.02
5201 9961 2.489971 TGTCGTGAAACTTTGCTAGGG 58.510 47.619 0.00 0.00 31.75 3.53
5202 9962 2.103432 TGTCGTGAAACTTTGCTAGGGA 59.897 45.455 0.00 0.00 31.75 4.20
5203 9963 3.135994 GTCGTGAAACTTTGCTAGGGAA 58.864 45.455 0.00 0.00 31.75 3.97
5204 9964 3.186613 GTCGTGAAACTTTGCTAGGGAAG 59.813 47.826 0.00 0.00 31.75 3.46
5205 9965 3.070446 TCGTGAAACTTTGCTAGGGAAGA 59.930 43.478 0.00 0.00 31.75 2.87
5206 9966 3.433615 CGTGAAACTTTGCTAGGGAAGAG 59.566 47.826 0.00 0.00 31.75 2.85
5207 9967 4.390264 GTGAAACTTTGCTAGGGAAGAGT 58.610 43.478 0.00 0.00 0.00 3.24
5208 9968 4.822350 GTGAAACTTTGCTAGGGAAGAGTT 59.178 41.667 0.00 0.00 0.00 3.01
5209 9969 5.299531 GTGAAACTTTGCTAGGGAAGAGTTT 59.700 40.000 0.00 0.00 39.30 2.66
5210 9970 5.891551 TGAAACTTTGCTAGGGAAGAGTTTT 59.108 36.000 0.00 0.00 37.43 2.43
5211 9971 6.379988 TGAAACTTTGCTAGGGAAGAGTTTTT 59.620 34.615 0.00 0.00 37.43 1.94
5263 10027 8.788325 TCTTCCATACTTCGATCGAGATATTA 57.212 34.615 18.54 2.97 0.00 0.98
5296 10060 8.978874 AATGCCACTCTTTAAAAAGGAAAAAT 57.021 26.923 2.77 0.00 36.67 1.82
5404 10169 9.847224 AAGGAAGAGAAAGAAACAATAGTAACA 57.153 29.630 0.00 0.00 0.00 2.41
5412 10177 6.134535 AGAAACAATAGTAACATGGTCCCA 57.865 37.500 0.00 0.00 0.00 4.37
5433 10198 1.547223 GGCATCTAGCATTCTGCCCAT 60.547 52.381 8.68 0.00 46.52 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.287466 TGCTGCATTATATATTTGTGGGAGTTT 59.713 33.333 0.00 0.00 0.00 2.66
4 5 6.822667 TGCTGCATTATATATTTGTGGGAG 57.177 37.500 0.00 0.00 0.00 4.30
6 7 6.747125 TGTTGCTGCATTATATATTTGTGGG 58.253 36.000 1.84 0.00 0.00 4.61
7 8 8.645730 TTTGTTGCTGCATTATATATTTGTGG 57.354 30.769 1.84 0.00 0.00 4.17
44 45 9.434420 TGTTCATTCTGTTTGTGATTTTTCTTT 57.566 25.926 0.00 0.00 0.00 2.52
45 46 9.603921 ATGTTCATTCTGTTTGTGATTTTTCTT 57.396 25.926 0.00 0.00 0.00 2.52
46 47 9.252962 GATGTTCATTCTGTTTGTGATTTTTCT 57.747 29.630 0.00 0.00 0.00 2.52
47 48 9.033481 TGATGTTCATTCTGTTTGTGATTTTTC 57.967 29.630 0.00 0.00 0.00 2.29
48 49 8.945481 TGATGTTCATTCTGTTTGTGATTTTT 57.055 26.923 0.00 0.00 0.00 1.94
49 50 7.170320 GCTGATGTTCATTCTGTTTGTGATTTT 59.830 33.333 0.00 0.00 0.00 1.82
50 51 6.643770 GCTGATGTTCATTCTGTTTGTGATTT 59.356 34.615 0.00 0.00 0.00 2.17
51 52 6.015688 AGCTGATGTTCATTCTGTTTGTGATT 60.016 34.615 0.00 0.00 0.00 2.57
52 53 5.475909 AGCTGATGTTCATTCTGTTTGTGAT 59.524 36.000 0.00 0.00 0.00 3.06
53 54 4.823442 AGCTGATGTTCATTCTGTTTGTGA 59.177 37.500 0.00 0.00 0.00 3.58
54 55 5.117355 AGCTGATGTTCATTCTGTTTGTG 57.883 39.130 0.00 0.00 0.00 3.33
55 56 5.779529 AAGCTGATGTTCATTCTGTTTGT 57.220 34.783 0.00 0.00 0.00 2.83
56 57 8.644619 CATTTAAGCTGATGTTCATTCTGTTTG 58.355 33.333 0.00 0.00 0.00 2.93
57 58 8.362639 ACATTTAAGCTGATGTTCATTCTGTTT 58.637 29.630 5.15 0.00 32.85 2.83
58 59 7.811236 CACATTTAAGCTGATGTTCATTCTGTT 59.189 33.333 7.64 0.00 34.42 3.16
59 60 7.175467 TCACATTTAAGCTGATGTTCATTCTGT 59.825 33.333 7.64 0.00 34.42 3.41
60 61 7.484007 GTCACATTTAAGCTGATGTTCATTCTG 59.516 37.037 7.64 0.00 34.42 3.02
61 62 7.175467 TGTCACATTTAAGCTGATGTTCATTCT 59.825 33.333 7.64 0.00 34.42 2.40
62 63 7.307694 TGTCACATTTAAGCTGATGTTCATTC 58.692 34.615 7.64 0.77 34.42 2.67
63 64 7.218228 TGTCACATTTAAGCTGATGTTCATT 57.782 32.000 7.64 0.00 34.42 2.57
64 65 6.822667 TGTCACATTTAAGCTGATGTTCAT 57.177 33.333 7.64 0.00 34.42 2.57
65 66 6.822667 ATGTCACATTTAAGCTGATGTTCA 57.177 33.333 7.64 9.88 34.42 3.18
66 67 9.793252 AATTATGTCACATTTAAGCTGATGTTC 57.207 29.630 0.00 5.86 34.42 3.18
109 110 7.402071 AGAAATATAAAGGGTGTGTCTAGGACA 59.598 37.037 0.00 0.00 40.50 4.02
110 111 7.793036 AGAAATATAAAGGGTGTGTCTAGGAC 58.207 38.462 0.00 0.00 0.00 3.85
111 112 7.989947 AGAAATATAAAGGGTGTGTCTAGGA 57.010 36.000 0.00 0.00 0.00 2.94
117 118 9.914834 TGCTTATAAGAAATATAAAGGGTGTGT 57.085 29.630 16.85 0.00 36.32 3.72
172 176 5.086104 AGTTTTCTAATCCTAGCGCTTGA 57.914 39.130 18.68 14.07 0.00 3.02
173 177 6.199342 GTCTAGTTTTCTAATCCTAGCGCTTG 59.801 42.308 18.68 14.96 31.45 4.01
182 186 5.695424 AGGGTGGTCTAGTTTTCTAATCC 57.305 43.478 0.00 0.00 31.45 3.01
184 188 6.296489 CCAGAAGGGTGGTCTAGTTTTCTAAT 60.296 42.308 0.00 0.00 32.32 1.73
327 915 3.074412 GGGATATGCCACGAACCTAATG 58.926 50.000 8.65 0.00 38.95 1.90
408 999 3.388308 CTGGAGCAGAGCACATATGTAC 58.612 50.000 8.32 2.44 32.44 2.90
443 1038 5.766174 TCACATGAATCCCACATACATCATG 59.234 40.000 0.00 10.96 45.89 3.07
473 1072 4.456911 CCACATACATGATACATCTTGGGC 59.543 45.833 0.00 0.00 36.57 5.36
486 1085 5.296748 TCCATCGAATACACCACATACATG 58.703 41.667 0.00 0.00 0.00 3.21
487 1086 5.545063 TCCATCGAATACACCACATACAT 57.455 39.130 0.00 0.00 0.00 2.29
488 1087 5.545063 ATCCATCGAATACACCACATACA 57.455 39.130 0.00 0.00 0.00 2.29
508 1119 8.576442 TCTCCAAGTTTTGACAAGGAAATTATC 58.424 33.333 0.00 0.00 0.00 1.75
511 1127 6.790232 TCTCCAAGTTTTGACAAGGAAATT 57.210 33.333 0.00 0.00 0.00 1.82
521 1138 3.890756 ACACATGCATCTCCAAGTTTTGA 59.109 39.130 0.00 0.00 0.00 2.69
554 1184 2.841160 AACAAGGGCCAAACGTCGC 61.841 57.895 6.18 0.00 0.00 5.19
589 1224 0.317854 GGTTTGAACTCGCCTTGCAC 60.318 55.000 0.00 0.00 0.00 4.57
628 1280 1.893919 GACCAGACCTGCTCCTCACC 61.894 65.000 0.00 0.00 0.00 4.02
659 1315 1.698506 CTAGCTGGACTCTGGGTAGG 58.301 60.000 0.00 0.00 0.00 3.18
661 1317 0.631753 AGCTAGCTGGACTCTGGGTA 59.368 55.000 18.57 0.00 0.00 3.69
663 1319 1.686052 CTAAGCTAGCTGGACTCTGGG 59.314 57.143 20.16 0.00 0.00 4.45
752 1408 1.026718 CCCATCGGAAGCAGTTGGAC 61.027 60.000 0.00 0.00 0.00 4.02
781 1437 2.422127 GGAAGAGGAGACAAGAGAGACG 59.578 54.545 0.00 0.00 0.00 4.18
859 1523 6.321690 GCTAGTTTCTACATCTTCCTGGAGTA 59.678 42.308 0.00 0.00 0.00 2.59
872 1536 3.285484 CCGAGGTAGGCTAGTTTCTACA 58.715 50.000 16.21 0.00 38.00 2.74
904 1574 2.638154 GATACGACGCGGGAGAGG 59.362 66.667 12.47 0.00 0.00 3.69
1242 1995 4.576330 ATTTGGGAGGAGAGGTAAACAG 57.424 45.455 0.00 0.00 0.00 3.16
1254 2007 9.813446 GATAATATAGTACGGTAATTTGGGAGG 57.187 37.037 0.00 0.00 0.00 4.30
1267 2020 8.683550 TGGCGAAATGAAGATAATATAGTACG 57.316 34.615 0.00 0.00 0.00 3.67
1316 2076 2.362077 GCAGGGAGTTTTGAGCTTTTGA 59.638 45.455 0.00 0.00 0.00 2.69
1317 2077 2.101249 TGCAGGGAGTTTTGAGCTTTTG 59.899 45.455 0.00 0.00 0.00 2.44
1318 2078 2.101415 GTGCAGGGAGTTTTGAGCTTTT 59.899 45.455 0.00 0.00 0.00 2.27
1319 2079 1.683385 GTGCAGGGAGTTTTGAGCTTT 59.317 47.619 0.00 0.00 0.00 3.51
1320 2080 1.133668 AGTGCAGGGAGTTTTGAGCTT 60.134 47.619 0.00 0.00 0.00 3.74
1321 2081 0.475906 AGTGCAGGGAGTTTTGAGCT 59.524 50.000 0.00 0.00 0.00 4.09
1322 2082 0.595095 CAGTGCAGGGAGTTTTGAGC 59.405 55.000 0.00 0.00 0.00 4.26
1323 2083 2.260844 TCAGTGCAGGGAGTTTTGAG 57.739 50.000 0.00 0.00 0.00 3.02
1342 3741 7.958053 AACTCTAGCAGTACGTGTAATTTTT 57.042 32.000 0.00 0.00 32.30 1.94
1371 3770 5.159273 GTCAGAAGAGAAATTGACCTCCT 57.841 43.478 0.00 0.00 35.15 3.69
1378 3777 9.403110 CAACTAAAATGGTCAGAAGAGAAATTG 57.597 33.333 0.00 0.00 0.00 2.32
1386 3790 6.148480 CAGGAGACAACTAAAATGGTCAGAAG 59.852 42.308 0.00 0.00 32.79 2.85
1392 3796 4.755123 CGAACAGGAGACAACTAAAATGGT 59.245 41.667 0.00 0.00 0.00 3.55
1400 3804 1.412710 TGAAGCGAACAGGAGACAACT 59.587 47.619 0.00 0.00 0.00 3.16
1402 3806 2.037121 TCATGAAGCGAACAGGAGACAA 59.963 45.455 0.00 0.00 0.00 3.18
1403 3807 1.618343 TCATGAAGCGAACAGGAGACA 59.382 47.619 0.00 0.00 0.00 3.41
1404 3808 2.370281 TCATGAAGCGAACAGGAGAC 57.630 50.000 0.00 0.00 0.00 3.36
1406 3810 3.070018 AGTTTCATGAAGCGAACAGGAG 58.930 45.455 15.51 0.00 30.20 3.69
1407 3811 3.067106 GAGTTTCATGAAGCGAACAGGA 58.933 45.455 15.51 0.00 0.00 3.86
1410 3814 4.245660 CCTAGAGTTTCATGAAGCGAACA 58.754 43.478 15.51 3.42 0.00 3.18
1411 3815 4.246458 ACCTAGAGTTTCATGAAGCGAAC 58.754 43.478 15.51 8.09 0.00 3.95
1412 3816 4.021456 TGACCTAGAGTTTCATGAAGCGAA 60.021 41.667 15.51 5.60 0.00 4.70
1413 3817 3.509967 TGACCTAGAGTTTCATGAAGCGA 59.490 43.478 15.51 5.72 0.00 4.93
1414 3818 3.614616 GTGACCTAGAGTTTCATGAAGCG 59.385 47.826 15.51 4.89 0.00 4.68
1415 3819 4.826556 AGTGACCTAGAGTTTCATGAAGC 58.173 43.478 13.90 13.90 0.00 3.86
1416 3820 6.708054 ACAAAGTGACCTAGAGTTTCATGAAG 59.292 38.462 8.41 0.00 0.00 3.02
1417 3821 6.591935 ACAAAGTGACCTAGAGTTTCATGAA 58.408 36.000 3.38 3.38 0.00 2.57
1418 3822 6.174720 ACAAAGTGACCTAGAGTTTCATGA 57.825 37.500 0.00 0.00 0.00 3.07
1419 3823 6.867662 AACAAAGTGACCTAGAGTTTCATG 57.132 37.500 0.00 0.00 0.00 3.07
1420 3824 7.736893 ACTAACAAAGTGACCTAGAGTTTCAT 58.263 34.615 0.00 0.00 36.93 2.57
1421 3825 7.120923 ACTAACAAAGTGACCTAGAGTTTCA 57.879 36.000 0.00 0.00 36.93 2.69
1422 3826 8.139989 TGTACTAACAAAGTGACCTAGAGTTTC 58.860 37.037 0.00 0.00 39.39 2.78
1423 3827 8.015185 TGTACTAACAAAGTGACCTAGAGTTT 57.985 34.615 0.00 0.00 39.39 2.66
1424 3828 7.287235 ACTGTACTAACAAAGTGACCTAGAGTT 59.713 37.037 0.00 0.00 39.39 3.01
1425 3829 6.776603 ACTGTACTAACAAAGTGACCTAGAGT 59.223 38.462 0.00 0.00 39.39 3.24
1426 3830 7.216973 ACTGTACTAACAAAGTGACCTAGAG 57.783 40.000 0.00 0.00 39.39 2.43
1427 3831 7.175641 GGTACTGTACTAACAAAGTGACCTAGA 59.824 40.741 16.79 0.00 39.39 2.43
1428 3832 7.176340 AGGTACTGTACTAACAAAGTGACCTAG 59.824 40.741 16.79 0.00 36.53 3.02
1429 3833 7.006509 AGGTACTGTACTAACAAAGTGACCTA 58.993 38.462 16.79 0.00 36.53 3.08
1430 3834 5.837438 AGGTACTGTACTAACAAAGTGACCT 59.163 40.000 16.79 1.40 36.53 3.85
1431 3835 6.094193 AGGTACTGTACTAACAAAGTGACC 57.906 41.667 16.79 0.00 36.53 4.02
1686 4093 3.005529 AGGAAGGAAGGAAGGAAGGAA 57.994 47.619 0.00 0.00 0.00 3.36
1687 4094 2.743131 AGGAAGGAAGGAAGGAAGGA 57.257 50.000 0.00 0.00 0.00 3.36
1688 4095 2.025793 GGAAGGAAGGAAGGAAGGAAGG 60.026 54.545 0.00 0.00 0.00 3.46
1689 4096 2.916269 AGGAAGGAAGGAAGGAAGGAAG 59.084 50.000 0.00 0.00 0.00 3.46
1690 4097 3.005529 AGGAAGGAAGGAAGGAAGGAA 57.994 47.619 0.00 0.00 0.00 3.36
1691 4098 2.743131 AGGAAGGAAGGAAGGAAGGA 57.257 50.000 0.00 0.00 0.00 3.36
1692 4099 2.025793 GGAAGGAAGGAAGGAAGGAAGG 60.026 54.545 0.00 0.00 0.00 3.46
1693 4100 2.916269 AGGAAGGAAGGAAGGAAGGAAG 59.084 50.000 0.00 0.00 0.00 3.46
1694 4101 3.005529 AGGAAGGAAGGAAGGAAGGAA 57.994 47.619 0.00 0.00 0.00 3.36
1695 4102 2.743131 AGGAAGGAAGGAAGGAAGGA 57.257 50.000 0.00 0.00 0.00 3.36
1696 4103 2.025793 GGAAGGAAGGAAGGAAGGAAGG 60.026 54.545 0.00 0.00 0.00 3.46
1697 4104 2.916269 AGGAAGGAAGGAAGGAAGGAAG 59.084 50.000 0.00 0.00 0.00 3.46
1698 4105 3.005529 AGGAAGGAAGGAAGGAAGGAA 57.994 47.619 0.00 0.00 0.00 3.36
1699 4106 2.743131 AGGAAGGAAGGAAGGAAGGA 57.257 50.000 0.00 0.00 0.00 3.36
1700 4107 2.355209 CGAAGGAAGGAAGGAAGGAAGG 60.355 54.545 0.00 0.00 0.00 3.46
1701 4108 2.303311 ACGAAGGAAGGAAGGAAGGAAG 59.697 50.000 0.00 0.00 0.00 3.46
1702 4109 2.302157 GACGAAGGAAGGAAGGAAGGAA 59.698 50.000 0.00 0.00 0.00 3.36
1703 4110 1.900486 GACGAAGGAAGGAAGGAAGGA 59.100 52.381 0.00 0.00 0.00 3.36
1704 4111 1.066071 GGACGAAGGAAGGAAGGAAGG 60.066 57.143 0.00 0.00 0.00 3.46
1705 4112 1.623811 TGGACGAAGGAAGGAAGGAAG 59.376 52.381 0.00 0.00 0.00 3.46
1706 4113 1.346722 GTGGACGAAGGAAGGAAGGAA 59.653 52.381 0.00 0.00 0.00 3.36
1707 4114 0.974383 GTGGACGAAGGAAGGAAGGA 59.026 55.000 0.00 0.00 0.00 3.36
1708 4115 0.685097 TGTGGACGAAGGAAGGAAGG 59.315 55.000 0.00 0.00 0.00 3.46
1709 4116 1.608283 GGTGTGGACGAAGGAAGGAAG 60.608 57.143 0.00 0.00 0.00 3.46
1734 4141 0.689412 GAAGGGAGGAGGACTGGAGG 60.689 65.000 0.00 0.00 0.00 4.30
1735 4142 1.040339 CGAAGGGAGGAGGACTGGAG 61.040 65.000 0.00 0.00 0.00 3.86
1736 4143 1.000486 CGAAGGGAGGAGGACTGGA 60.000 63.158 0.00 0.00 0.00 3.86
1737 4144 0.905337 AACGAAGGGAGGAGGACTGG 60.905 60.000 0.00 0.00 0.00 4.00
1738 4145 0.977395 AAACGAAGGGAGGAGGACTG 59.023 55.000 0.00 0.00 0.00 3.51
1739 4146 1.203199 AGAAACGAAGGGAGGAGGACT 60.203 52.381 0.00 0.00 0.00 3.85
1740 4147 1.268066 AGAAACGAAGGGAGGAGGAC 58.732 55.000 0.00 0.00 0.00 3.85
1741 4148 1.900486 GAAGAAACGAAGGGAGGAGGA 59.100 52.381 0.00 0.00 0.00 3.71
1900 4311 2.104331 GACGCCATGGTCGTCGAT 59.896 61.111 31.42 14.49 45.19 3.59
1948 4359 3.648914 GGTACCTGGTGTATCCCCT 57.351 57.895 10.23 0.00 34.77 4.79
1971 4382 3.833070 ACAAAGAGAGTGGTAGGTAGGTG 59.167 47.826 0.00 0.00 0.00 4.00
1979 4390 1.272490 CGCAGGACAAAGAGAGTGGTA 59.728 52.381 0.00 0.00 0.00 3.25
1980 4391 0.034059 CGCAGGACAAAGAGAGTGGT 59.966 55.000 0.00 0.00 0.00 4.16
1981 4392 2.832931 CGCAGGACAAAGAGAGTGG 58.167 57.895 0.00 0.00 0.00 4.00
2009 4420 3.253230 TCATCATGCTACGTGTGAAGTG 58.747 45.455 0.00 0.00 0.00 3.16
2013 4424 3.866883 TTCTCATCATGCTACGTGTGA 57.133 42.857 0.00 0.00 0.00 3.58
2014 4425 5.063817 TGAATTTCTCATCATGCTACGTGTG 59.936 40.000 0.00 0.00 0.00 3.82
2015 4426 5.178061 TGAATTTCTCATCATGCTACGTGT 58.822 37.500 0.00 0.00 0.00 4.49
2016 4427 5.723492 TGAATTTCTCATCATGCTACGTG 57.277 39.130 0.00 0.00 0.00 4.49
2165 4700 0.733150 GCCCGCAACTTCCTAACATC 59.267 55.000 0.00 0.00 0.00 3.06
2166 4701 1.024579 CGCCCGCAACTTCCTAACAT 61.025 55.000 0.00 0.00 0.00 2.71
2334 4879 5.911752 TCAAACAGCATTTTTCTAGGCAAA 58.088 33.333 0.00 0.00 0.00 3.68
2358 4905 3.773667 TCTGTTAGTCGGTCCTCTCTCTA 59.226 47.826 0.00 0.00 0.00 2.43
2360 4907 2.988570 TCTGTTAGTCGGTCCTCTCTC 58.011 52.381 0.00 0.00 0.00 3.20
2373 4920 6.867662 ACTGATTTTGGTCTGTTCTGTTAG 57.132 37.500 0.00 0.00 0.00 2.34
2638 6957 2.662596 GAGTCGTGGTGCATCCCA 59.337 61.111 0.00 0.00 34.77 4.37
2710 7029 0.036022 TGTGATCCGTGGCATTGTCA 59.964 50.000 0.00 0.00 0.00 3.58
2761 7080 1.071471 AGCTGACAACCCACCTTCG 59.929 57.895 0.00 0.00 0.00 3.79
2875 7200 5.850557 TTCACCACATTGTTGTTCAGATT 57.149 34.783 0.00 0.00 32.34 2.40
2936 7274 3.885358 GATCACACGATCGTAGCACATA 58.115 45.455 22.26 2.86 38.84 2.29
2976 7314 6.969366 TGACAAAACCATCATACAAGAACAG 58.031 36.000 0.00 0.00 0.00 3.16
2978 7316 6.206634 TCCTGACAAAACCATCATACAAGAAC 59.793 38.462 0.00 0.00 0.00 3.01
3004 7691 2.249413 CTTCCATGTCGCCAGCCTCT 62.249 60.000 0.00 0.00 0.00 3.69
3169 7862 2.076100 TGATCGAAGCAAAGCAATCGT 58.924 42.857 13.92 5.20 39.71 3.73
3170 7863 2.811902 TGATCGAAGCAAAGCAATCG 57.188 45.000 9.83 9.83 39.95 3.34
3208 7901 5.892686 TGCACCCAATCAAAATCAGATGATA 59.107 36.000 0.00 0.00 35.29 2.15
3318 8011 2.034066 CCGCCTTTCCTGCTCCAA 59.966 61.111 0.00 0.00 0.00 3.53
3355 8048 3.371034 TCATCAACCTCCCGTATCTTCA 58.629 45.455 0.00 0.00 0.00 3.02
3392 8085 0.323816 AGTCGGTGATCTGGAGCTCA 60.324 55.000 17.19 0.61 0.00 4.26
3559 8252 1.661509 GACAAACCAAGCCGCAAGC 60.662 57.895 0.00 0.00 44.25 4.01
3606 8299 1.683385 TCCTATCATGGCAGACTCGTG 59.317 52.381 0.00 0.00 0.00 4.35
3836 8529 2.833582 TCCTCTAAGCTCCCGCCG 60.834 66.667 0.00 0.00 36.60 6.46
3848 8541 2.284699 CCCCCAAGACGGTCCTCT 60.285 66.667 4.14 0.00 0.00 3.69
3923 8628 4.024984 TGGAGGTAGGCCAGGGCT 62.025 66.667 21.38 21.38 42.39 5.19
3986 8694 2.276116 GCACCACTCGTCCTCCAGA 61.276 63.158 0.00 0.00 0.00 3.86
4623 9373 2.759973 TCCTTCATCGCCTCCGCT 60.760 61.111 0.00 0.00 0.00 5.52
4668 9418 1.026718 GCTTGAGGTTGGTCATCGGG 61.027 60.000 0.00 0.00 0.00 5.14
4752 9502 1.482593 CGATGGAAGGTGCTAGGTCTT 59.517 52.381 0.00 0.00 0.00 3.01
4755 9505 0.617820 ACCGATGGAAGGTGCTAGGT 60.618 55.000 0.00 0.00 41.10 3.08
4811 9562 3.243771 ACGGAGGGAGTAAATGCTAATCG 60.244 47.826 0.00 0.00 0.00 3.34
4824 9579 5.294552 GTCATCTATTTTGAAACGGAGGGAG 59.705 44.000 0.00 0.00 0.00 4.30
4825 9580 5.045869 AGTCATCTATTTTGAAACGGAGGGA 60.046 40.000 0.00 0.00 0.00 4.20
4826 9581 5.186198 AGTCATCTATTTTGAAACGGAGGG 58.814 41.667 0.00 0.00 0.00 4.30
4827 9582 5.874810 TGAGTCATCTATTTTGAAACGGAGG 59.125 40.000 0.00 0.00 0.00 4.30
4828 9583 6.968131 TGAGTCATCTATTTTGAAACGGAG 57.032 37.500 0.00 0.00 0.00 4.63
4829 9584 6.934645 AGTTGAGTCATCTATTTTGAAACGGA 59.065 34.615 1.70 0.00 0.00 4.69
4830 9585 7.133891 AGTTGAGTCATCTATTTTGAAACGG 57.866 36.000 1.70 0.00 0.00 4.44
4859 9614 8.983702 TGACCCAATTTTGTACTAAAGTTAGT 57.016 30.769 8.41 8.67 45.39 2.24
4861 9616 9.802039 AGATGACCCAATTTTGTACTAAAGTTA 57.198 29.630 8.41 0.00 0.00 2.24
4862 9617 8.706322 AGATGACCCAATTTTGTACTAAAGTT 57.294 30.769 8.41 1.83 0.00 2.66
4863 9618 9.975218 ATAGATGACCCAATTTTGTACTAAAGT 57.025 29.630 8.41 2.98 0.00 2.66
4872 9627 9.289303 CGTTCTAAAATAGATGACCCAATTTTG 57.711 33.333 0.00 0.00 34.37 2.44
4873 9628 8.466798 CCGTTCTAAAATAGATGACCCAATTTT 58.533 33.333 0.00 0.00 36.04 1.82
4874 9629 7.832187 TCCGTTCTAAAATAGATGACCCAATTT 59.168 33.333 0.00 0.00 34.22 1.82
4875 9630 7.343357 TCCGTTCTAAAATAGATGACCCAATT 58.657 34.615 0.00 0.00 34.22 2.32
4876 9631 6.895782 TCCGTTCTAAAATAGATGACCCAAT 58.104 36.000 0.00 0.00 34.22 3.16
4877 9632 6.302535 TCCGTTCTAAAATAGATGACCCAA 57.697 37.500 0.00 0.00 34.22 4.12
4878 9633 5.163343 CCTCCGTTCTAAAATAGATGACCCA 60.163 44.000 0.00 0.00 34.22 4.51
4879 9634 5.070047 TCCTCCGTTCTAAAATAGATGACCC 59.930 44.000 0.00 0.00 34.22 4.46
4880 9635 6.158023 TCCTCCGTTCTAAAATAGATGACC 57.842 41.667 0.00 0.00 34.22 4.02
4881 9636 7.266400 ACTTCCTCCGTTCTAAAATAGATGAC 58.734 38.462 0.00 0.00 34.22 3.06
4882 9637 7.419711 ACTTCCTCCGTTCTAAAATAGATGA 57.580 36.000 0.00 0.00 34.22 2.92
4883 9638 7.382759 GCTACTTCCTCCGTTCTAAAATAGATG 59.617 40.741 0.00 0.00 34.22 2.90
4884 9639 7.069578 TGCTACTTCCTCCGTTCTAAAATAGAT 59.930 37.037 0.00 0.00 34.22 1.98
4885 9640 6.379133 TGCTACTTCCTCCGTTCTAAAATAGA 59.621 38.462 0.00 0.00 0.00 1.98
4886 9641 6.570692 TGCTACTTCCTCCGTTCTAAAATAG 58.429 40.000 0.00 0.00 0.00 1.73
4887 9642 6.534475 TGCTACTTCCTCCGTTCTAAAATA 57.466 37.500 0.00 0.00 0.00 1.40
4888 9643 5.416271 TGCTACTTCCTCCGTTCTAAAAT 57.584 39.130 0.00 0.00 0.00 1.82
4889 9644 4.877378 TGCTACTTCCTCCGTTCTAAAA 57.123 40.909 0.00 0.00 0.00 1.52
4890 9645 4.464951 TCATGCTACTTCCTCCGTTCTAAA 59.535 41.667 0.00 0.00 0.00 1.85
4891 9646 4.021229 TCATGCTACTTCCTCCGTTCTAA 58.979 43.478 0.00 0.00 0.00 2.10
4892 9647 3.628008 TCATGCTACTTCCTCCGTTCTA 58.372 45.455 0.00 0.00 0.00 2.10
4893 9648 2.457598 TCATGCTACTTCCTCCGTTCT 58.542 47.619 0.00 0.00 0.00 3.01
4894 9649 2.961526 TCATGCTACTTCCTCCGTTC 57.038 50.000 0.00 0.00 0.00 3.95
4895 9650 3.695830 TTTCATGCTACTTCCTCCGTT 57.304 42.857 0.00 0.00 0.00 4.44
4896 9651 3.008049 AGTTTTCATGCTACTTCCTCCGT 59.992 43.478 0.00 0.00 0.00 4.69
4897 9652 3.600388 AGTTTTCATGCTACTTCCTCCG 58.400 45.455 0.00 0.00 0.00 4.63
4898 9653 5.553290 GAAGTTTTCATGCTACTTCCTCC 57.447 43.478 16.91 1.61 41.04 4.30
4902 9657 3.751698 ACGGGAAGTTTTCATGCTACTTC 59.248 43.478 18.39 18.39 44.34 3.01
4903 9658 3.751518 ACGGGAAGTTTTCATGCTACTT 58.248 40.909 6.63 6.63 34.97 2.24
4904 9659 3.418684 ACGGGAAGTTTTCATGCTACT 57.581 42.857 0.00 0.00 0.00 2.57
4905 9660 3.252458 ACAACGGGAAGTTTTCATGCTAC 59.748 43.478 0.00 0.00 42.02 3.58
4906 9661 3.252215 CACAACGGGAAGTTTTCATGCTA 59.748 43.478 0.00 0.00 42.02 3.49
4907 9662 2.034558 CACAACGGGAAGTTTTCATGCT 59.965 45.455 0.00 0.00 42.02 3.79
4911 9666 2.421751 TCCACAACGGGAAGTTTTCA 57.578 45.000 0.00 0.00 42.02 2.69
4924 9679 3.133721 CACCAGGTTCCAAAAATCCACAA 59.866 43.478 0.00 0.00 0.00 3.33
5010 9766 4.718961 ACACTAGACAATGCTTGTTCCTT 58.281 39.130 0.00 0.00 45.52 3.36
5036 9792 4.217754 TCACGAAACTTTACACATTGGC 57.782 40.909 0.00 0.00 0.00 4.52
5058 9814 6.348950 CCAACAATACCGCAGAAGTCATTTTA 60.349 38.462 0.00 0.00 0.00 1.52
5153 9913 4.942852 ACTTTCATGGCATTTTGAACGAA 58.057 34.783 11.36 2.25 31.87 3.85
5161 9921 5.406175 CGACAAAATGACTTTCATGGCATTT 59.594 36.000 0.00 2.83 41.27 2.32
5165 9925 3.670055 CACGACAAAATGACTTTCATGGC 59.330 43.478 0.00 0.00 37.15 4.40
5169 9929 6.189677 AGTTTCACGACAAAATGACTTTCA 57.810 33.333 0.00 0.00 0.00 2.69
5170 9930 7.383361 CAAAGTTTCACGACAAAATGACTTTC 58.617 34.615 0.00 0.00 0.00 2.62
5186 9946 4.706842 ACTCTTCCCTAGCAAAGTTTCA 57.293 40.909 0.00 0.00 0.00 2.69
5233 9993 7.585867 TCTCGATCGAAGTATGGAAGAATAAG 58.414 38.462 19.92 1.03 0.00 1.73
5241 10001 7.822822 TGTCTAATATCTCGATCGAAGTATGGA 59.177 37.037 19.92 11.89 0.00 3.41
5242 10002 7.975750 TGTCTAATATCTCGATCGAAGTATGG 58.024 38.462 19.92 14.53 0.00 2.74
5263 10027 8.635765 TTTTTAAAGAGTGGCATTCTATGTCT 57.364 30.769 13.26 0.00 35.48 3.41
5296 10060 4.007659 TCGTGTCACAGCTGATTACTCTA 58.992 43.478 23.35 5.53 0.00 2.43
5297 10061 2.820197 TCGTGTCACAGCTGATTACTCT 59.180 45.455 23.35 0.00 0.00 3.24
5368 10133 9.057089 GTTTCTTTCTCTTCCTTCTTATTGACA 57.943 33.333 0.00 0.00 0.00 3.58
5383 10148 9.220767 GACCATGTTACTATTGTTTCTTTCTCT 57.779 33.333 0.00 0.00 0.00 3.10
5404 10169 0.695462 TGCTAGATGCCTGGGACCAT 60.695 55.000 0.00 0.00 42.00 3.55
5630 10397 5.648178 TTCCCCGCCTTTACTTTATTTTC 57.352 39.130 0.00 0.00 0.00 2.29
5699 13855 8.706322 TTAGCCCACTTTTCTTCTTCTTTATT 57.294 30.769 0.00 0.00 0.00 1.40
5755 13911 8.794553 TGAAAACTCTCTCGAACTTAAGTAGAT 58.205 33.333 8.92 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.