Multiple sequence alignment - TraesCS5B01G204100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G204100 chr5B 100.000 7952 0 0 1 7952 372111854 372103903 0.000000e+00 14685.0
1 TraesCS5B01G204100 chr5B 87.634 372 28 5 6244 6606 372105530 372105168 4.440000e-112 416.0
2 TraesCS5B01G204100 chr5B 87.634 372 28 5 6325 6687 372105611 372105249 4.440000e-112 416.0
3 TraesCS5B01G204100 chr5B 85.950 363 23 15 1969 2316 372109468 372109119 5.870000e-96 363.0
4 TraesCS5B01G204100 chr5B 85.950 363 23 15 2387 2736 372109886 372109539 5.870000e-96 363.0
5 TraesCS5B01G204100 chr5B 87.973 291 26 1 6397 6687 372105611 372105330 1.280000e-87 335.0
6 TraesCS5B01G204100 chr5B 98.413 189 3 0 2825 3013 694170740 694170552 4.600000e-87 333.0
7 TraesCS5B01G204100 chr5B 89.048 210 20 3 1 209 434922787 434922580 2.850000e-64 257.0
8 TraesCS5B01G204100 chr5B 94.382 89 5 0 7859 7947 121518301 121518213 3.870000e-28 137.0
9 TraesCS5B01G204100 chr5B 93.258 89 6 0 2395 2483 372109122 372109034 1.800000e-26 132.0
10 TraesCS5B01G204100 chr5B 93.258 89 6 0 2733 2821 372109460 372109372 1.800000e-26 132.0
11 TraesCS5B01G204100 chr5B 82.993 147 14 3 2072 2218 372108839 372108704 1.080000e-23 122.0
12 TraesCS5B01G204100 chr5B 82.993 147 14 3 3016 3151 372109783 372109637 1.080000e-23 122.0
13 TraesCS5B01G204100 chr5A 95.363 4766 164 23 3007 7735 413411120 413415865 0.000000e+00 7524.0
14 TraesCS5B01G204100 chr5A 93.924 971 33 10 1349 2310 413410073 413411026 0.000000e+00 1443.0
15 TraesCS5B01G204100 chr5A 90.631 523 32 9 361 875 413408796 413409309 0.000000e+00 678.0
16 TraesCS5B01G204100 chr5A 95.325 385 16 1 926 1308 413409607 413409991 1.900000e-170 610.0
17 TraesCS5B01G204100 chr5A 87.879 462 24 12 2381 2823 413410678 413411126 1.530000e-141 514.0
18 TraesCS5B01G204100 chr5A 89.112 349 29 1 6330 6669 413414356 413414704 7.380000e-115 425.0
19 TraesCS5B01G204100 chr5A 87.006 354 37 1 6244 6588 413414432 413414785 2.690000e-104 390.0
20 TraesCS5B01G204100 chr5A 92.537 268 20 0 6402 6669 413414356 413414623 1.250000e-102 385.0
21 TraesCS5B01G204100 chr5A 87.255 306 23 7 1915 2218 413410973 413411264 1.280000e-87 335.0
22 TraesCS5B01G204100 chr5A 85.714 294 33 1 6241 6525 413414510 413414803 1.300000e-77 302.0
23 TraesCS5B01G204100 chr5A 91.176 204 18 0 1 204 470350129 470350332 2.190000e-70 278.0
24 TraesCS5B01G204100 chr5A 87.552 241 17 4 2395 2634 413411036 413411264 4.730000e-67 267.0
25 TraesCS5B01G204100 chr5A 83.333 150 14 4 3013 3151 413410784 413410933 2.330000e-25 128.0
26 TraesCS5B01G204100 chr5A 89.247 93 9 1 7359 7450 280154704 280154612 1.810000e-21 115.0
27 TraesCS5B01G204100 chr5A 93.846 65 4 0 726 790 413410066 413410002 1.830000e-16 99.0
28 TraesCS5B01G204100 chr5D 96.834 2464 57 5 3007 5470 320892227 320889785 0.000000e+00 4098.0
29 TraesCS5B01G204100 chr5D 92.462 2149 93 28 208 2318 320894869 320892752 0.000000e+00 3007.0
30 TraesCS5B01G204100 chr5D 93.638 1556 73 10 6325 7858 320888972 320887421 0.000000e+00 2302.0
31 TraesCS5B01G204100 chr5D 95.118 1147 42 7 5470 6606 320889743 320888601 0.000000e+00 1796.0
32 TraesCS5B01G204100 chr5D 95.444 439 10 4 2395 2823 320892659 320892221 0.000000e+00 691.0
33 TraesCS5B01G204100 chr5D 92.336 274 21 0 6397 6670 320888972 320888699 2.690000e-104 390.0
34 TraesCS5B01G204100 chr5D 86.842 342 20 11 1974 2302 320892662 320892333 7.590000e-95 359.0
35 TraesCS5B01G204100 chr5D 85.965 342 25 12 2395 2729 320893085 320892760 2.120000e-90 344.0
36 TraesCS5B01G204100 chr5D 84.516 310 28 8 1915 2218 320892378 320892083 1.010000e-73 289.0
37 TraesCS5B01G204100 chr5D 89.524 210 20 2 1 209 367590693 367590485 1.700000e-66 265.0
38 TraesCS5B01G204100 chr5D 93.258 89 6 0 2733 2821 320892659 320892571 1.800000e-26 132.0
39 TraesCS5B01G204100 chr5D 89.412 85 8 1 7365 7448 373835047 373835131 1.090000e-18 106.0
40 TraesCS5B01G204100 chr6B 81.131 1627 193 64 3049 4590 615967736 615969333 0.000000e+00 1199.0
41 TraesCS5B01G204100 chr6B 75.947 449 63 22 6604 7028 615970690 615971117 1.050000e-43 189.0
42 TraesCS5B01G204100 chr6B 94.505 91 4 1 7856 7945 563072183 563072273 1.080000e-28 139.0
43 TraesCS5B01G204100 chr6B 94.382 89 5 0 7859 7947 563064956 563065044 3.870000e-28 137.0
44 TraesCS5B01G204100 chr6B 88.636 88 8 2 7362 7448 296405361 296405275 1.090000e-18 106.0
45 TraesCS5B01G204100 chr6D 81.043 1630 192 40 3049 4595 409753527 409755122 0.000000e+00 1190.0
46 TraesCS5B01G204100 chr6D 93.750 208 13 0 1 208 445174602 445174395 5.990000e-81 313.0
47 TraesCS5B01G204100 chr6D 77.311 476 59 25 6604 7052 409756510 409756963 1.330000e-57 235.0
48 TraesCS5B01G204100 chr6A 83.607 976 118 24 3048 3990 555220760 555221726 0.000000e+00 878.0
49 TraesCS5B01G204100 chr6A 82.500 520 66 10 4096 4590 555227278 555227797 4.410000e-117 433.0
50 TraesCS5B01G204100 chr6A 77.778 306 44 12 4655 4949 555228009 555228301 4.940000e-37 167.0
51 TraesCS5B01G204100 chr6A 96.000 50 2 0 2347 2396 610350274 610350323 1.840000e-11 82.4
52 TraesCS5B01G204100 chr2A 100.000 185 0 0 2825 3009 185123147 185123331 7.640000e-90 342.0
53 TraesCS5B01G204100 chr2A 98.446 193 2 1 2825 3017 47763573 47763764 9.880000e-89 339.0
54 TraesCS5B01G204100 chr2A 93.333 45 3 0 2345 2389 709863098 709863054 5.150000e-07 67.6
55 TraesCS5B01G204100 chr7B 99.465 187 1 0 2825 3011 245176058 245176244 2.750000e-89 340.0
56 TraesCS5B01G204100 chr7B 93.617 94 6 0 7852 7945 126514802 126514709 2.990000e-29 141.0
57 TraesCS5B01G204100 chr7B 84.211 76 8 4 2342 2416 633027582 633027510 3.980000e-08 71.3
58 TraesCS5B01G204100 chr1B 96.602 206 3 3 2807 3008 388768907 388769112 9.880000e-89 339.0
59 TraesCS5B01G204100 chr1B 93.548 93 6 0 7853 7945 233805942 233806034 1.080000e-28 139.0
60 TraesCS5B01G204100 chr1B 94.505 91 4 1 7856 7945 234678043 234677953 1.080000e-28 139.0
61 TraesCS5B01G204100 chr1B 91.071 56 3 2 2347 2401 45483233 45483287 3.080000e-09 75.0
62 TraesCS5B01G204100 chr1B 91.071 56 3 2 2347 2401 45543603 45543657 3.080000e-09 75.0
63 TraesCS5B01G204100 chr1B 91.071 56 3 2 2347 2401 45600882 45600936 3.080000e-09 75.0
64 TraesCS5B01G204100 chr4A 100.000 182 0 0 2825 3006 245258102 245257921 3.560000e-88 337.0
65 TraesCS5B01G204100 chr4A 88.298 94 9 2 7361 7453 662113778 662113686 2.350000e-20 111.0
66 TraesCS5B01G204100 chr4A 84.146 82 9 4 2310 2390 576606310 576606388 8.560000e-10 76.8
67 TraesCS5B01G204100 chr3B 100.000 182 0 0 2825 3006 780293880 780293699 3.560000e-88 337.0
68 TraesCS5B01G204100 chr3B 89.535 86 8 1 7364 7448 702030909 702030824 3.030000e-19 108.0
69 TraesCS5B01G204100 chr4B 99.454 183 1 0 2825 3007 291852220 291852402 4.600000e-87 333.0
70 TraesCS5B01G204100 chr4B 92.233 206 16 0 1 206 546686271 546686476 7.810000e-75 292.0
71 TraesCS5B01G204100 chr4B 86.425 221 30 0 1 221 183823952 183824172 7.970000e-60 243.0
72 TraesCS5B01G204100 chr4B 93.478 92 5 1 7855 7945 362717413 362717322 1.390000e-27 135.0
73 TraesCS5B01G204100 chr4B 94.318 88 5 0 7858 7945 362724364 362724277 1.390000e-27 135.0
74 TraesCS5B01G204100 chr4B 88.372 86 9 1 7364 7448 664200699 664200784 1.410000e-17 102.0
75 TraesCS5B01G204100 chr3A 99.454 183 1 0 2825 3007 86719527 86719709 4.600000e-87 333.0
76 TraesCS5B01G204100 chr3D 93.204 206 14 0 1 206 32174662 32174457 3.610000e-78 303.0
77 TraesCS5B01G204100 chr3D 88.406 207 23 1 1 206 464059701 464059495 1.710000e-61 248.0
78 TraesCS5B01G204100 chr3D 87.342 79 3 5 2313 2390 548553420 548553492 5.110000e-12 84.2
79 TraesCS5B01G204100 chr2D 89.423 208 22 0 1 208 538392530 538392737 6.120000e-66 263.0
80 TraesCS5B01G204100 chr2B 94.382 89 5 0 7857 7945 26674818 26674730 3.870000e-28 137.0
81 TraesCS5B01G204100 chr4D 90.000 90 7 2 7365 7453 39209504 39209592 1.810000e-21 115.0
82 TraesCS5B01G204100 chr1D 96.000 50 2 0 2346 2395 12331932 12331981 1.840000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G204100 chr5B 372103903 372111854 7951 True 14685.000000 14685 100.000000 1 7952 1 chr5B.!!$R2 7951
1 TraesCS5B01G204100 chr5B 372105168 372109886 4718 True 266.777778 416 87.515889 1969 6687 9 chr5B.!!$R5 4718
2 TraesCS5B01G204100 chr5A 413408796 413415865 7069 False 1083.416667 7524 89.635917 361 7735 12 chr5A.!!$F2 7374
3 TraesCS5B01G204100 chr5D 320887421 320894869 7448 True 1340.800000 4098 91.641300 208 7858 10 chr5D.!!$R2 7650
4 TraesCS5B01G204100 chr6B 615967736 615971117 3381 False 694.000000 1199 78.539000 3049 7028 2 chr6B.!!$F3 3979
5 TraesCS5B01G204100 chr6D 409753527 409756963 3436 False 712.500000 1190 79.177000 3049 7052 2 chr6D.!!$F1 4003
6 TraesCS5B01G204100 chr6A 555220760 555221726 966 False 878.000000 878 83.607000 3048 3990 1 chr6A.!!$F1 942
7 TraesCS5B01G204100 chr6A 555227278 555228301 1023 False 300.000000 433 80.139000 4096 4949 2 chr6A.!!$F3 853

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
109 110 0.033109 GGTTGGAGGGGGATTTGAGG 60.033 60.0 0.0 0.0 0.0 3.86 F
186 187 0.034089 CTCCAACCCTCCACAATCCC 60.034 60.0 0.0 0.0 0.0 3.85 F
803 830 0.105913 CCTCCCCTGGACTCCTACTC 60.106 65.0 0.0 0.0 0.0 2.59 F
805 832 0.927767 TCCCCTGGACTCCTACTCTC 59.072 60.0 0.0 0.0 0.0 3.20 F
6379 7245 0.251297 CAAGCCACCAGTTCCATCCA 60.251 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1737 2088 2.923020 CACCAATTTGACTTAATGCCGC 59.077 45.455 0.00 0.00 0.00 6.53 R
1883 2234 4.371786 TGAAAGCAACAACAACAACAACA 58.628 34.783 0.00 0.00 0.00 3.33 R
1947 2298 4.463539 TGTGCTGCCATCTACAAAAATGAT 59.536 37.500 0.00 0.00 0.00 2.45 R
6381 7247 0.175989 GATCAGTGGGAGGAACGTCC 59.824 60.000 5.14 5.14 36.58 4.79 R
7865 8863 0.394352 GGGATGAACGTGGGATGCTT 60.394 55.000 0.00 0.00 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.866798 TTTTTAACCGTTTTACACCATTTTAGT 57.133 25.926 0.00 0.00 0.00 2.24
27 28 9.866798 TTTTAACCGTTTTACACCATTTTAGTT 57.133 25.926 0.00 0.00 0.00 2.24
28 29 9.513727 TTTAACCGTTTTACACCATTTTAGTTC 57.486 29.630 0.00 0.00 0.00 3.01
29 30 6.696441 ACCGTTTTACACCATTTTAGTTCA 57.304 33.333 0.00 0.00 0.00 3.18
30 31 7.098074 ACCGTTTTACACCATTTTAGTTCAA 57.902 32.000 0.00 0.00 0.00 2.69
31 32 7.718525 ACCGTTTTACACCATTTTAGTTCAAT 58.281 30.769 0.00 0.00 0.00 2.57
32 33 8.848182 ACCGTTTTACACCATTTTAGTTCAATA 58.152 29.630 0.00 0.00 0.00 1.90
33 34 9.849166 CCGTTTTACACCATTTTAGTTCAATAT 57.151 29.630 0.00 0.00 0.00 1.28
46 47 7.801716 TTAGTTCAATATGAAAATCCCTCCG 57.198 36.000 0.00 0.00 38.22 4.63
47 48 5.755849 AGTTCAATATGAAAATCCCTCCGT 58.244 37.500 0.00 0.00 38.22 4.69
48 49 5.590259 AGTTCAATATGAAAATCCCTCCGTG 59.410 40.000 0.00 0.00 38.22 4.94
49 50 5.110814 TCAATATGAAAATCCCTCCGTGT 57.889 39.130 0.00 0.00 0.00 4.49
50 51 5.123227 TCAATATGAAAATCCCTCCGTGTC 58.877 41.667 0.00 0.00 0.00 3.67
51 52 4.771114 ATATGAAAATCCCTCCGTGTCA 57.229 40.909 0.00 0.00 0.00 3.58
52 53 2.940994 TGAAAATCCCTCCGTGTCAA 57.059 45.000 0.00 0.00 0.00 3.18
53 54 3.216187 TGAAAATCCCTCCGTGTCAAA 57.784 42.857 0.00 0.00 0.00 2.69
54 55 2.882137 TGAAAATCCCTCCGTGTCAAAC 59.118 45.455 0.00 0.00 0.00 2.93
55 56 2.649531 AAATCCCTCCGTGTCAAACA 57.350 45.000 0.00 0.00 0.00 2.83
56 57 2.185004 AATCCCTCCGTGTCAAACAG 57.815 50.000 0.00 0.00 0.00 3.16
57 58 1.056660 ATCCCTCCGTGTCAAACAGT 58.943 50.000 0.00 0.00 0.00 3.55
58 59 0.105964 TCCCTCCGTGTCAAACAGTG 59.894 55.000 0.00 0.00 0.00 3.66
59 60 0.179056 CCCTCCGTGTCAAACAGTGT 60.179 55.000 0.00 0.00 0.00 3.55
60 61 1.663695 CCTCCGTGTCAAACAGTGTT 58.336 50.000 1.64 1.64 0.00 3.32
61 62 1.597663 CCTCCGTGTCAAACAGTGTTC 59.402 52.381 9.40 0.00 0.00 3.18
62 63 2.550978 CTCCGTGTCAAACAGTGTTCT 58.449 47.619 9.40 0.00 0.00 3.01
63 64 2.540101 CTCCGTGTCAAACAGTGTTCTC 59.460 50.000 9.40 3.78 0.00 2.87
64 65 2.167693 TCCGTGTCAAACAGTGTTCTCT 59.832 45.455 9.40 0.00 0.00 3.10
65 66 3.382227 TCCGTGTCAAACAGTGTTCTCTA 59.618 43.478 9.40 0.00 0.00 2.43
66 67 4.038763 TCCGTGTCAAACAGTGTTCTCTAT 59.961 41.667 9.40 0.00 0.00 1.98
67 68 4.150627 CCGTGTCAAACAGTGTTCTCTATG 59.849 45.833 9.40 3.58 0.00 2.23
68 69 4.150627 CGTGTCAAACAGTGTTCTCTATGG 59.849 45.833 9.40 0.00 0.00 2.74
69 70 5.297547 GTGTCAAACAGTGTTCTCTATGGA 58.702 41.667 9.40 0.00 0.00 3.41
70 71 5.406780 GTGTCAAACAGTGTTCTCTATGGAG 59.593 44.000 9.40 0.00 40.73 3.86
71 72 4.932200 GTCAAACAGTGTTCTCTATGGAGG 59.068 45.833 9.40 0.00 39.86 4.30
72 73 4.020218 TCAAACAGTGTTCTCTATGGAGGG 60.020 45.833 9.40 0.00 39.86 4.30
73 74 2.472029 ACAGTGTTCTCTATGGAGGGG 58.528 52.381 6.21 0.00 39.86 4.79
74 75 2.044492 ACAGTGTTCTCTATGGAGGGGA 59.956 50.000 6.21 0.00 39.86 4.81
75 76 3.107601 CAGTGTTCTCTATGGAGGGGAA 58.892 50.000 6.21 0.00 39.86 3.97
76 77 3.713764 CAGTGTTCTCTATGGAGGGGAAT 59.286 47.826 6.21 0.00 39.86 3.01
77 78 4.164988 CAGTGTTCTCTATGGAGGGGAATT 59.835 45.833 6.21 0.00 39.86 2.17
78 79 4.790790 AGTGTTCTCTATGGAGGGGAATTT 59.209 41.667 6.21 0.00 39.86 1.82
79 80 4.884164 GTGTTCTCTATGGAGGGGAATTTG 59.116 45.833 6.21 0.00 39.86 2.32
80 81 4.788075 TGTTCTCTATGGAGGGGAATTTGA 59.212 41.667 6.21 0.00 39.86 2.69
81 82 5.104360 TGTTCTCTATGGAGGGGAATTTGAG 60.104 44.000 6.21 0.00 39.86 3.02
82 83 3.976654 TCTCTATGGAGGGGAATTTGAGG 59.023 47.826 6.21 0.00 39.86 3.86
83 84 3.056080 TCTATGGAGGGGAATTTGAGGG 58.944 50.000 0.00 0.00 0.00 4.30
84 85 2.000290 ATGGAGGGGAATTTGAGGGA 58.000 50.000 0.00 0.00 0.00 4.20
85 86 2.000290 TGGAGGGGAATTTGAGGGAT 58.000 50.000 0.00 0.00 0.00 3.85
86 87 1.570501 TGGAGGGGAATTTGAGGGATG 59.429 52.381 0.00 0.00 0.00 3.51
87 88 1.570979 GGAGGGGAATTTGAGGGATGT 59.429 52.381 0.00 0.00 0.00 3.06
88 89 2.659428 GAGGGGAATTTGAGGGATGTG 58.341 52.381 0.00 0.00 0.00 3.21
89 90 2.003072 AGGGGAATTTGAGGGATGTGT 58.997 47.619 0.00 0.00 0.00 3.72
90 91 2.102578 GGGGAATTTGAGGGATGTGTG 58.897 52.381 0.00 0.00 0.00 3.82
91 92 2.102578 GGGAATTTGAGGGATGTGTGG 58.897 52.381 0.00 0.00 0.00 4.17
92 93 2.557452 GGGAATTTGAGGGATGTGTGGT 60.557 50.000 0.00 0.00 0.00 4.16
93 94 3.165071 GGAATTTGAGGGATGTGTGGTT 58.835 45.455 0.00 0.00 0.00 3.67
94 95 3.056607 GGAATTTGAGGGATGTGTGGTTG 60.057 47.826 0.00 0.00 0.00 3.77
95 96 1.993956 TTTGAGGGATGTGTGGTTGG 58.006 50.000 0.00 0.00 0.00 3.77
96 97 1.144691 TTGAGGGATGTGTGGTTGGA 58.855 50.000 0.00 0.00 0.00 3.53
97 98 0.692476 TGAGGGATGTGTGGTTGGAG 59.308 55.000 0.00 0.00 0.00 3.86
98 99 0.035056 GAGGGATGTGTGGTTGGAGG 60.035 60.000 0.00 0.00 0.00 4.30
99 100 1.000896 GGGATGTGTGGTTGGAGGG 60.001 63.158 0.00 0.00 0.00 4.30
100 101 1.000896 GGATGTGTGGTTGGAGGGG 60.001 63.158 0.00 0.00 0.00 4.79
101 102 1.000896 GATGTGTGGTTGGAGGGGG 60.001 63.158 0.00 0.00 0.00 5.40
102 103 1.465188 ATGTGTGGTTGGAGGGGGA 60.465 57.895 0.00 0.00 0.00 4.81
103 104 0.850883 ATGTGTGGTTGGAGGGGGAT 60.851 55.000 0.00 0.00 0.00 3.85
104 105 1.071314 TGTGTGGTTGGAGGGGGATT 61.071 55.000 0.00 0.00 0.00 3.01
105 106 0.114364 GTGTGGTTGGAGGGGGATTT 59.886 55.000 0.00 0.00 0.00 2.17
106 107 0.114168 TGTGGTTGGAGGGGGATTTG 59.886 55.000 0.00 0.00 0.00 2.32
107 108 0.407918 GTGGTTGGAGGGGGATTTGA 59.592 55.000 0.00 0.00 0.00 2.69
108 109 0.704076 TGGTTGGAGGGGGATTTGAG 59.296 55.000 0.00 0.00 0.00 3.02
109 110 0.033109 GGTTGGAGGGGGATTTGAGG 60.033 60.000 0.00 0.00 0.00 3.86
110 111 0.704664 GTTGGAGGGGGATTTGAGGT 59.295 55.000 0.00 0.00 0.00 3.85
111 112 1.077169 GTTGGAGGGGGATTTGAGGTT 59.923 52.381 0.00 0.00 0.00 3.50
112 113 1.466858 TGGAGGGGGATTTGAGGTTT 58.533 50.000 0.00 0.00 0.00 3.27
113 114 1.357761 TGGAGGGGGATTTGAGGTTTC 59.642 52.381 0.00 0.00 0.00 2.78
114 115 1.357761 GGAGGGGGATTTGAGGTTTCA 59.642 52.381 0.00 0.00 0.00 2.69
115 116 2.225267 GGAGGGGGATTTGAGGTTTCAA 60.225 50.000 0.00 0.00 41.44 2.69
116 117 3.092301 GAGGGGGATTTGAGGTTTCAAG 58.908 50.000 0.00 0.00 43.76 3.02
117 118 2.721906 AGGGGGATTTGAGGTTTCAAGA 59.278 45.455 0.00 0.00 43.76 3.02
118 119 3.092301 GGGGGATTTGAGGTTTCAAGAG 58.908 50.000 0.00 0.00 43.76 2.85
119 120 3.245264 GGGGGATTTGAGGTTTCAAGAGA 60.245 47.826 0.00 0.00 43.76 3.10
120 121 4.407365 GGGGATTTGAGGTTTCAAGAGAA 58.593 43.478 0.00 0.00 43.76 2.87
121 122 5.019470 GGGGATTTGAGGTTTCAAGAGAAT 58.981 41.667 0.00 0.00 43.76 2.40
122 123 5.481824 GGGGATTTGAGGTTTCAAGAGAATT 59.518 40.000 0.00 0.00 43.76 2.17
123 124 6.393171 GGGATTTGAGGTTTCAAGAGAATTG 58.607 40.000 0.00 0.00 43.76 2.32
124 125 6.393171 GGATTTGAGGTTTCAAGAGAATTGG 58.607 40.000 0.00 0.00 43.76 3.16
125 126 6.209391 GGATTTGAGGTTTCAAGAGAATTGGA 59.791 38.462 0.00 0.00 43.76 3.53
126 127 7.093596 GGATTTGAGGTTTCAAGAGAATTGGAT 60.094 37.037 0.00 0.00 43.76 3.41
127 128 6.579666 TTGAGGTTTCAAGAGAATTGGATG 57.420 37.500 0.00 0.00 38.37 3.51
128 129 5.012239 TGAGGTTTCAAGAGAATTGGATGG 58.988 41.667 0.00 0.00 32.89 3.51
129 130 5.222109 TGAGGTTTCAAGAGAATTGGATGGA 60.222 40.000 0.00 0.00 32.89 3.41
130 131 5.644188 AGGTTTCAAGAGAATTGGATGGAA 58.356 37.500 0.00 0.00 32.89 3.53
131 132 5.713861 AGGTTTCAAGAGAATTGGATGGAAG 59.286 40.000 0.00 0.00 32.89 3.46
132 133 5.711976 GGTTTCAAGAGAATTGGATGGAAGA 59.288 40.000 0.00 0.00 32.89 2.87
133 134 6.127786 GGTTTCAAGAGAATTGGATGGAAGAG 60.128 42.308 0.00 0.00 32.89 2.85
134 135 5.108187 TCAAGAGAATTGGATGGAAGAGG 57.892 43.478 0.00 0.00 0.00 3.69
135 136 4.080129 TCAAGAGAATTGGATGGAAGAGGG 60.080 45.833 0.00 0.00 0.00 4.30
136 137 2.782341 AGAGAATTGGATGGAAGAGGGG 59.218 50.000 0.00 0.00 0.00 4.79
137 138 1.855599 AGAATTGGATGGAAGAGGGGG 59.144 52.381 0.00 0.00 0.00 5.40
138 139 1.852965 GAATTGGATGGAAGAGGGGGA 59.147 52.381 0.00 0.00 0.00 4.81
139 140 2.235530 ATTGGATGGAAGAGGGGGAT 57.764 50.000 0.00 0.00 0.00 3.85
140 141 2.000290 TTGGATGGAAGAGGGGGATT 58.000 50.000 0.00 0.00 0.00 3.01
141 142 1.522900 TGGATGGAAGAGGGGGATTC 58.477 55.000 0.00 0.00 0.00 2.52
142 143 1.274943 TGGATGGAAGAGGGGGATTCA 60.275 52.381 0.00 0.00 0.00 2.57
143 144 1.143889 GGATGGAAGAGGGGGATTCAC 59.856 57.143 0.00 0.00 0.00 3.18
144 145 1.143889 GATGGAAGAGGGGGATTCACC 59.856 57.143 0.00 0.00 38.08 4.02
145 146 0.178846 TGGAAGAGGGGGATTCACCA 60.179 55.000 7.39 0.00 41.20 4.17
146 147 0.999712 GGAAGAGGGGGATTCACCAA 59.000 55.000 7.39 0.00 41.20 3.67
147 148 1.357761 GGAAGAGGGGGATTCACCAAA 59.642 52.381 7.39 0.00 41.20 3.28
148 149 2.023984 GGAAGAGGGGGATTCACCAAAT 60.024 50.000 7.39 0.00 41.20 2.32
149 150 3.291584 GAAGAGGGGGATTCACCAAATC 58.708 50.000 7.39 1.71 42.68 2.17
156 157 2.826674 GATTCACCAAATCCCCTGGA 57.173 50.000 0.00 0.00 38.27 3.86
157 158 3.100207 GATTCACCAAATCCCCTGGAA 57.900 47.619 0.00 0.00 38.27 3.53
158 159 3.646534 GATTCACCAAATCCCCTGGAAT 58.353 45.455 0.00 0.00 38.27 3.01
159 160 2.826674 TCACCAAATCCCCTGGAATC 57.173 50.000 0.00 0.00 37.40 2.52
160 161 1.287739 TCACCAAATCCCCTGGAATCC 59.712 52.381 0.00 0.00 37.40 3.01
161 162 1.288932 CACCAAATCCCCTGGAATCCT 59.711 52.381 0.00 0.00 37.40 3.24
162 163 1.570979 ACCAAATCCCCTGGAATCCTC 59.429 52.381 0.00 0.00 37.40 3.71
163 164 1.855599 CCAAATCCCCTGGAATCCTCT 59.144 52.381 0.00 0.00 35.85 3.69
164 165 2.158549 CCAAATCCCCTGGAATCCTCTC 60.159 54.545 0.00 0.00 35.85 3.20
165 166 1.826447 AATCCCCTGGAATCCTCTCC 58.174 55.000 0.00 0.00 34.34 3.71
166 167 0.649992 ATCCCCTGGAATCCTCTCCA 59.350 55.000 0.00 0.00 43.45 3.86
167 168 0.326618 TCCCCTGGAATCCTCTCCAC 60.327 60.000 0.00 0.00 40.71 4.02
168 169 0.327000 CCCCTGGAATCCTCTCCACT 60.327 60.000 0.00 0.00 40.71 4.00
169 170 1.127343 CCCTGGAATCCTCTCCACTC 58.873 60.000 0.00 0.00 40.71 3.51
170 171 1.127343 CCTGGAATCCTCTCCACTCC 58.873 60.000 0.00 0.00 40.71 3.85
171 172 1.623557 CCTGGAATCCTCTCCACTCCA 60.624 57.143 0.00 0.00 40.71 3.86
172 173 2.191400 CTGGAATCCTCTCCACTCCAA 58.809 52.381 0.00 0.00 40.71 3.53
173 174 1.909302 TGGAATCCTCTCCACTCCAAC 59.091 52.381 0.00 0.00 40.71 3.77
174 175 1.210722 GGAATCCTCTCCACTCCAACC 59.789 57.143 0.00 0.00 35.36 3.77
175 176 1.210722 GAATCCTCTCCACTCCAACCC 59.789 57.143 0.00 0.00 0.00 4.11
176 177 0.419459 ATCCTCTCCACTCCAACCCT 59.581 55.000 0.00 0.00 0.00 4.34
177 178 0.252284 TCCTCTCCACTCCAACCCTC 60.252 60.000 0.00 0.00 0.00 4.30
178 179 1.268283 CCTCTCCACTCCAACCCTCC 61.268 65.000 0.00 0.00 0.00 4.30
179 180 0.545309 CTCTCCACTCCAACCCTCCA 60.545 60.000 0.00 0.00 0.00 3.86
180 181 0.836400 TCTCCACTCCAACCCTCCAC 60.836 60.000 0.00 0.00 0.00 4.02
181 182 1.074090 TCCACTCCAACCCTCCACA 60.074 57.895 0.00 0.00 0.00 4.17
182 183 0.696143 TCCACTCCAACCCTCCACAA 60.696 55.000 0.00 0.00 0.00 3.33
183 184 0.405585 CCACTCCAACCCTCCACAAT 59.594 55.000 0.00 0.00 0.00 2.71
184 185 1.614317 CCACTCCAACCCTCCACAATC 60.614 57.143 0.00 0.00 0.00 2.67
185 186 0.698818 ACTCCAACCCTCCACAATCC 59.301 55.000 0.00 0.00 0.00 3.01
186 187 0.034089 CTCCAACCCTCCACAATCCC 60.034 60.000 0.00 0.00 0.00 3.85
187 188 0.477597 TCCAACCCTCCACAATCCCT 60.478 55.000 0.00 0.00 0.00 4.20
188 189 0.409484 CCAACCCTCCACAATCCCTT 59.591 55.000 0.00 0.00 0.00 3.95
189 190 1.638589 CCAACCCTCCACAATCCCTTA 59.361 52.381 0.00 0.00 0.00 2.69
190 191 2.620627 CCAACCCTCCACAATCCCTTAC 60.621 54.545 0.00 0.00 0.00 2.34
191 192 2.308866 CAACCCTCCACAATCCCTTACT 59.691 50.000 0.00 0.00 0.00 2.24
192 193 1.916181 ACCCTCCACAATCCCTTACTG 59.084 52.381 0.00 0.00 0.00 2.74
193 194 1.916181 CCCTCCACAATCCCTTACTGT 59.084 52.381 0.00 0.00 0.00 3.55
194 195 2.092914 CCCTCCACAATCCCTTACTGTC 60.093 54.545 0.00 0.00 0.00 3.51
195 196 2.571653 CCTCCACAATCCCTTACTGTCA 59.428 50.000 0.00 0.00 0.00 3.58
196 197 3.009033 CCTCCACAATCCCTTACTGTCAA 59.991 47.826 0.00 0.00 0.00 3.18
197 198 4.506625 CCTCCACAATCCCTTACTGTCAAA 60.507 45.833 0.00 0.00 0.00 2.69
198 199 4.394729 TCCACAATCCCTTACTGTCAAAC 58.605 43.478 0.00 0.00 0.00 2.93
199 200 4.141287 CCACAATCCCTTACTGTCAAACA 58.859 43.478 0.00 0.00 0.00 2.83
200 201 4.582656 CCACAATCCCTTACTGTCAAACAA 59.417 41.667 0.00 0.00 0.00 2.83
201 202 5.278463 CCACAATCCCTTACTGTCAAACAAG 60.278 44.000 0.00 0.00 0.00 3.16
202 203 4.827284 ACAATCCCTTACTGTCAAACAAGG 59.173 41.667 0.25 0.25 37.81 3.61
203 204 2.858745 TCCCTTACTGTCAAACAAGGC 58.141 47.619 1.53 0.00 36.93 4.35
204 205 1.886542 CCCTTACTGTCAAACAAGGCC 59.113 52.381 0.00 0.00 36.93 5.19
205 206 2.489073 CCCTTACTGTCAAACAAGGCCT 60.489 50.000 0.00 0.00 36.93 5.19
206 207 3.244770 CCCTTACTGTCAAACAAGGCCTA 60.245 47.826 5.16 0.00 36.93 3.93
256 257 0.952280 CTATGGAGCCGAGTTCGCTA 59.048 55.000 0.00 0.00 38.18 4.26
259 260 2.758089 GGAGCCGAGTTCGCTACGA 61.758 63.158 0.00 0.00 38.18 3.43
271 272 1.641123 CGCTACGAAAACCCCGCAAT 61.641 55.000 0.00 0.00 0.00 3.56
272 273 1.371595 GCTACGAAAACCCCGCAATA 58.628 50.000 0.00 0.00 0.00 1.90
277 278 0.666374 GAAAACCCCGCAATATCCCG 59.334 55.000 0.00 0.00 0.00 5.14
303 304 2.227036 AGGGACCAAGGGTGAGCAG 61.227 63.158 0.00 0.00 35.25 4.24
406 408 4.327680 AGATGGGCACAGTAAGAAAGAAC 58.672 43.478 0.00 0.00 0.00 3.01
424 426 6.655078 AAGAACTTGCACACTTCCATTTAT 57.345 33.333 0.00 0.00 0.00 1.40
556 564 1.352083 ACCAAAGCTAGAGCCAGTCA 58.648 50.000 0.00 0.00 43.38 3.41
559 567 2.289945 CCAAAGCTAGAGCCAGTCAAGT 60.290 50.000 0.00 0.00 43.38 3.16
580 588 3.014085 GCGTGACCTTCCCATCCGA 62.014 63.158 0.00 0.00 0.00 4.55
584 592 2.284405 ACCTTCCCATCCGACGGT 60.284 61.111 14.79 0.00 29.89 4.83
638 646 1.071814 GGCCGTCCACCTACACAAA 59.928 57.895 0.00 0.00 0.00 2.83
659 667 2.930562 ACAGCACCTCCCCTCCAC 60.931 66.667 0.00 0.00 0.00 4.02
687 707 1.606531 CTTCCCTGCCCTCTCCTTG 59.393 63.158 0.00 0.00 0.00 3.61
690 710 4.120755 CCTGCCCTCTCCTTGCCC 62.121 72.222 0.00 0.00 0.00 5.36
728 748 2.651361 CAGAACCAGCGTCTCCGT 59.349 61.111 0.00 0.00 36.15 4.69
779 806 4.047059 ACTACCCACACCGTCGCG 62.047 66.667 0.00 0.00 0.00 5.87
798 825 4.423209 AGGCCTCCCCTGGACTCC 62.423 72.222 0.00 0.00 43.16 3.85
799 826 4.423209 GGCCTCCCCTGGACTCCT 62.423 72.222 0.00 0.00 30.82 3.69
800 827 2.696893 GCCTCCCCTGGACTCCTA 59.303 66.667 0.00 0.00 0.00 2.94
801 828 1.762858 GCCTCCCCTGGACTCCTAC 60.763 68.421 0.00 0.00 0.00 3.18
802 829 2.020137 CCTCCCCTGGACTCCTACT 58.980 63.158 0.00 0.00 0.00 2.57
803 830 0.105913 CCTCCCCTGGACTCCTACTC 60.106 65.000 0.00 0.00 0.00 2.59
804 831 0.930726 CTCCCCTGGACTCCTACTCT 59.069 60.000 0.00 0.00 0.00 3.24
805 832 0.927767 TCCCCTGGACTCCTACTCTC 59.072 60.000 0.00 0.00 0.00 3.20
806 833 0.930726 CCCCTGGACTCCTACTCTCT 59.069 60.000 0.00 0.00 0.00 3.10
807 834 1.133606 CCCCTGGACTCCTACTCTCTC 60.134 61.905 0.00 0.00 0.00 3.20
808 835 1.850345 CCCTGGACTCCTACTCTCTCT 59.150 57.143 0.00 0.00 0.00 3.10
817 844 6.027025 ACTCCTACTCTCTCTCTCTCTCTA 57.973 45.833 0.00 0.00 0.00 2.43
821 858 2.365617 ACTCTCTCTCTCTCTCTAGCCG 59.634 54.545 0.00 0.00 0.00 5.52
1175 1459 4.298332 CACTCCCCGTTTCTTTGATTTTG 58.702 43.478 0.00 0.00 0.00 2.44
1238 1537 2.203337 GGCGATGCCTTGCCCATA 60.203 61.111 9.04 0.00 46.69 2.74
1239 1538 1.604593 GGCGATGCCTTGCCCATAT 60.605 57.895 9.04 0.00 46.69 1.78
1317 1618 4.559862 TCTTCCCAATCTCCTCAAAGAC 57.440 45.455 0.00 0.00 0.00 3.01
1321 1622 4.398319 TCCCAATCTCCTCAAAGACAAAC 58.602 43.478 0.00 0.00 0.00 2.93
1500 1843 6.238648 CGAGGGTTGTTGTTCTTCAAATAAGT 60.239 38.462 0.00 0.00 37.81 2.24
1502 1845 7.847096 AGGGTTGTTGTTCTTCAAATAAGTTT 58.153 30.769 0.00 0.00 37.81 2.66
1504 1847 8.941977 GGGTTGTTGTTCTTCAAATAAGTTTTT 58.058 29.630 0.00 0.00 37.81 1.94
1545 1889 3.011818 TCGTAGAGTTCGCTCCAACATA 58.988 45.455 0.00 0.00 45.16 2.29
1558 1907 1.408127 CCAACATAGATGGTGCCCGAA 60.408 52.381 1.78 0.00 44.01 4.30
1640 1991 5.514059 TGTTTCGTAAGGCGTAAATACAC 57.486 39.130 0.00 0.00 42.13 2.90
1737 2088 8.726870 AAAAGGAAATGATTCATTGGCTATTG 57.273 30.769 12.50 0.00 38.52 1.90
1746 2097 2.954989 TCATTGGCTATTGCGGCATTAA 59.045 40.909 2.28 0.00 39.34 1.40
1754 2105 5.043248 GCTATTGCGGCATTAAGTCAAATT 58.957 37.500 2.28 0.00 0.00 1.82
1832 2183 7.954788 TCCTACAAAAATTATTGTTTGTGCC 57.045 32.000 18.83 0.00 45.21 5.01
1875 2226 5.930135 AGGTACTTCAGATCTTGTTGTGTT 58.070 37.500 0.00 0.00 27.25 3.32
1877 2228 6.828785 AGGTACTTCAGATCTTGTTGTGTTTT 59.171 34.615 0.00 0.00 27.25 2.43
1878 2229 7.012421 AGGTACTTCAGATCTTGTTGTGTTTTC 59.988 37.037 0.00 0.00 27.25 2.29
1879 2230 7.012421 GGTACTTCAGATCTTGTTGTGTTTTCT 59.988 37.037 0.00 0.00 0.00 2.52
1881 2232 7.830739 ACTTCAGATCTTGTTGTGTTTTCTTT 58.169 30.769 0.00 0.00 0.00 2.52
1883 2234 9.143631 CTTCAGATCTTGTTGTGTTTTCTTTTT 57.856 29.630 0.00 0.00 0.00 1.94
1884 2235 8.464770 TCAGATCTTGTTGTGTTTTCTTTTTG 57.535 30.769 0.00 0.00 0.00 2.44
1885 2236 8.087750 TCAGATCTTGTTGTGTTTTCTTTTTGT 58.912 29.630 0.00 0.00 0.00 2.83
1889 2240 8.202745 TCTTGTTGTGTTTTCTTTTTGTTGTT 57.797 26.923 0.00 0.00 0.00 2.83
1890 2241 8.119226 TCTTGTTGTGTTTTCTTTTTGTTGTTG 58.881 29.630 0.00 0.00 0.00 3.33
1891 2242 7.308782 TGTTGTGTTTTCTTTTTGTTGTTGT 57.691 28.000 0.00 0.00 0.00 3.32
1892 2243 7.752695 TGTTGTGTTTTCTTTTTGTTGTTGTT 58.247 26.923 0.00 0.00 0.00 2.83
1893 2244 7.693951 TGTTGTGTTTTCTTTTTGTTGTTGTTG 59.306 29.630 0.00 0.00 0.00 3.33
1894 2245 7.308782 TGTGTTTTCTTTTTGTTGTTGTTGT 57.691 28.000 0.00 0.00 0.00 3.32
1895 2246 7.752695 TGTGTTTTCTTTTTGTTGTTGTTGTT 58.247 26.923 0.00 0.00 0.00 2.83
1896 2247 7.693951 TGTGTTTTCTTTTTGTTGTTGTTGTTG 59.306 29.630 0.00 0.00 0.00 3.33
6378 7244 0.967380 CCAAGCCACCAGTTCCATCC 60.967 60.000 0.00 0.00 0.00 3.51
6379 7245 0.251297 CAAGCCACCAGTTCCATCCA 60.251 55.000 0.00 0.00 0.00 3.41
6380 7246 0.482446 AAGCCACCAGTTCCATCCAA 59.518 50.000 0.00 0.00 0.00 3.53
6381 7247 0.038744 AGCCACCAGTTCCATCCAAG 59.961 55.000 0.00 0.00 0.00 3.61
6382 7248 0.967380 GCCACCAGTTCCATCCAAGG 60.967 60.000 0.00 0.00 0.00 3.61
6383 7249 0.698238 CCACCAGTTCCATCCAAGGA 59.302 55.000 0.00 0.00 35.41 3.36
6384 7250 1.614317 CCACCAGTTCCATCCAAGGAC 60.614 57.143 0.00 0.00 37.42 3.85
6385 7251 0.324943 ACCAGTTCCATCCAAGGACG 59.675 55.000 0.00 0.00 37.42 4.79
6386 7252 0.324943 CCAGTTCCATCCAAGGACGT 59.675 55.000 0.00 0.00 37.42 4.34
6387 7253 1.271379 CCAGTTCCATCCAAGGACGTT 60.271 52.381 0.00 0.00 37.42 3.99
6388 7254 2.076863 CAGTTCCATCCAAGGACGTTC 58.923 52.381 0.00 0.00 37.42 3.95
6389 7255 1.003233 AGTTCCATCCAAGGACGTTCC 59.997 52.381 0.00 0.00 37.42 3.62
6397 7263 3.793060 AGGACGTTCCTCCCACTG 58.207 61.111 0.00 0.00 45.66 3.66
6398 7264 1.155390 AGGACGTTCCTCCCACTGA 59.845 57.895 0.00 0.00 45.66 3.41
6399 7265 0.252284 AGGACGTTCCTCCCACTGAT 60.252 55.000 0.00 0.00 45.66 2.90
6400 7266 0.175989 GGACGTTCCTCCCACTGATC 59.824 60.000 0.00 0.00 32.53 2.92
6401 7267 0.895530 GACGTTCCTCCCACTGATCA 59.104 55.000 0.00 0.00 0.00 2.92
6402 7268 0.898320 ACGTTCCTCCCACTGATCAG 59.102 55.000 21.37 21.37 0.00 2.90
6403 7269 0.176680 CGTTCCTCCCACTGATCAGG 59.823 60.000 26.08 14.68 0.00 3.86
6404 7270 1.280457 GTTCCTCCCACTGATCAGGT 58.720 55.000 26.08 9.58 0.00 4.00
6405 7271 1.065854 GTTCCTCCCACTGATCAGGTG 60.066 57.143 26.08 19.55 34.78 4.00
6406 7272 0.413434 TCCTCCCACTGATCAGGTGA 59.587 55.000 26.08 16.94 36.89 4.02
6407 7273 1.008815 TCCTCCCACTGATCAGGTGAT 59.991 52.381 26.08 2.50 36.89 3.06
6408 7274 1.140452 CCTCCCACTGATCAGGTGATG 59.860 57.143 26.08 14.80 36.89 3.07
6409 7275 2.113807 CTCCCACTGATCAGGTGATGA 58.886 52.381 26.08 17.35 43.70 2.92
6410 7276 1.833630 TCCCACTGATCAGGTGATGAC 59.166 52.381 26.08 0.00 41.91 3.06
6411 7277 1.836166 CCCACTGATCAGGTGATGACT 59.164 52.381 26.08 0.00 41.91 3.41
6412 7278 2.419713 CCCACTGATCAGGTGATGACTG 60.420 54.545 26.08 12.38 41.91 3.51
6414 7280 3.055602 CCACTGATCAGGTGATGACTGAA 60.056 47.826 26.08 0.00 46.89 3.02
6415 7281 4.182339 CACTGATCAGGTGATGACTGAAG 58.818 47.826 26.08 0.00 46.89 3.02
6416 7282 3.196463 CTGATCAGGTGATGACTGAAGC 58.804 50.000 15.38 0.00 46.89 3.86
6417 7283 2.093288 TGATCAGGTGATGACTGAAGCC 60.093 50.000 0.00 0.00 46.89 4.35
6418 7284 0.615331 TCAGGTGATGACTGAAGCCC 59.385 55.000 0.00 0.00 41.66 5.19
6419 7285 0.393537 CAGGTGATGACTGAAGCCCC 60.394 60.000 0.00 0.00 38.20 5.80
6420 7286 0.548682 AGGTGATGACTGAAGCCCCT 60.549 55.000 0.00 0.00 0.00 4.79
6421 7287 0.393537 GGTGATGACTGAAGCCCCTG 60.394 60.000 0.00 0.00 0.00 4.45
6422 7288 0.393537 GTGATGACTGAAGCCCCTGG 60.394 60.000 0.00 0.00 0.00 4.45
6423 7289 0.547471 TGATGACTGAAGCCCCTGGA 60.547 55.000 0.00 0.00 0.00 3.86
6424 7290 0.179936 GATGACTGAAGCCCCTGGAG 59.820 60.000 0.00 0.00 0.00 3.86
6425 7291 1.277580 ATGACTGAAGCCCCTGGAGG 61.278 60.000 0.00 0.00 0.00 4.30
6426 7292 1.920835 GACTGAAGCCCCTGGAGGT 60.921 63.158 0.00 0.00 0.00 3.85
6427 7293 1.904990 GACTGAAGCCCCTGGAGGTC 61.905 65.000 0.00 0.00 0.00 3.85
6428 7294 1.920325 CTGAAGCCCCTGGAGGTCA 60.920 63.158 0.00 0.00 0.00 4.02
6429 7295 1.908340 CTGAAGCCCCTGGAGGTCAG 61.908 65.000 0.00 1.78 43.00 3.51
6430 7296 1.920835 GAAGCCCCTGGAGGTCAGT 60.921 63.158 0.00 0.00 41.83 3.41
6431 7297 1.904990 GAAGCCCCTGGAGGTCAGTC 61.905 65.000 0.00 0.00 41.83 3.51
6432 7298 3.403558 GCCCCTGGAGGTCAGTCC 61.404 72.222 0.00 0.00 41.83 3.85
6433 7299 2.122729 CCCCTGGAGGTCAGTCCA 59.877 66.667 0.00 0.00 44.82 4.02
6434 7300 1.538876 CCCCTGGAGGTCAGTCCAA 60.539 63.158 0.00 0.00 46.29 3.53
6435 7301 1.557269 CCCCTGGAGGTCAGTCCAAG 61.557 65.000 0.00 0.00 46.29 3.61
6436 7302 1.298014 CCTGGAGGTCAGTCCAAGC 59.702 63.158 0.00 0.00 46.29 4.01
6437 7303 1.298014 CTGGAGGTCAGTCCAAGCC 59.702 63.158 0.00 0.00 46.29 4.35
6438 7304 1.461268 TGGAGGTCAGTCCAAGCCA 60.461 57.895 0.00 0.00 44.01 4.75
6439 7305 1.003233 GGAGGTCAGTCCAAGCCAC 60.003 63.158 0.00 0.00 39.02 5.01
6440 7306 1.003233 GAGGTCAGTCCAAGCCACC 60.003 63.158 0.00 0.00 39.02 4.61
6441 7307 1.768684 GAGGTCAGTCCAAGCCACCA 61.769 60.000 0.00 0.00 39.02 4.17
6442 7308 1.302832 GGTCAGTCCAAGCCACCAG 60.303 63.158 0.00 0.00 35.97 4.00
6443 7309 1.968540 GTCAGTCCAAGCCACCAGC 60.969 63.158 0.00 0.00 44.25 4.85
6747 7694 0.185416 ACCGGTCCGATCCATCTACT 59.815 55.000 14.39 0.00 0.00 2.57
6765 7712 2.579873 ACTATCATGGACATTGCTGCC 58.420 47.619 0.00 0.00 0.00 4.85
6798 7757 1.279025 TGACCCAAGCCCCTATGGAC 61.279 60.000 0.00 0.00 39.12 4.02
6802 7761 1.152881 CAAGCCCCTATGGACCAGC 60.153 63.158 0.00 0.00 35.39 4.85
7185 8158 0.731417 CATGGAGTTAGCTGCACTGC 59.269 55.000 2.22 11.20 45.67 4.40
7401 8391 7.919091 TCTCGTAATATAAGAGCGTTTTGACAT 59.081 33.333 0.00 0.00 34.82 3.06
7421 8412 6.295039 ACATTACACTAGTGTCAAAAACGG 57.705 37.500 31.11 16.91 43.74 4.44
7441 8434 6.749923 ACGGTCTTATATTATAGGACGGAC 57.250 41.667 26.32 12.23 33.54 4.79
7476 8469 2.878580 CGTGCCGTGTTACTGGTTATA 58.121 47.619 0.00 0.00 0.00 0.98
7493 8486 5.480073 TGGTTATATTGTTGCTCCTTGCTTT 59.520 36.000 0.00 0.00 43.37 3.51
7501 8494 1.354031 TGCTCCTTGCTTTCCATGGTA 59.646 47.619 12.58 0.00 43.37 3.25
7525 8518 3.472283 TTGTGAACATGCCATTTGCTT 57.528 38.095 0.00 0.00 42.00 3.91
7533 8526 1.850377 TGCCATTTGCTTGTGAAACG 58.150 45.000 0.00 0.00 40.00 3.60
7548 8541 7.623297 GCTTGTGAAACGTATGTTCATATGACA 60.623 37.037 4.48 7.61 42.39 3.58
7549 8542 7.056002 TGTGAAACGTATGTTCATATGACAC 57.944 36.000 4.48 18.27 42.39 3.67
7550 8543 6.871492 TGTGAAACGTATGTTCATATGACACT 59.129 34.615 22.67 0.00 42.39 3.55
7551 8544 7.148656 TGTGAAACGTATGTTCATATGACACTG 60.149 37.037 22.67 3.99 42.39 3.66
7552 8545 5.718649 AACGTATGTTCATATGACACTGC 57.281 39.130 4.48 0.00 30.83 4.40
7553 8546 4.119862 ACGTATGTTCATATGACACTGCC 58.880 43.478 4.48 0.00 0.00 4.85
7576 8574 2.676632 TGCACCATTGAAATGCATCC 57.323 45.000 0.00 0.00 44.17 3.51
7582 8580 3.382546 ACCATTGAAATGCATCCTACTGC 59.617 43.478 0.00 0.00 42.62 4.40
7637 8635 2.027100 GGAAGGGTGAAGAGAAACGGAT 60.027 50.000 0.00 0.00 0.00 4.18
7651 8649 5.745227 AGAAACGGATAGAATGTGGATTGT 58.255 37.500 0.00 0.00 0.00 2.71
7686 8684 1.376543 TACGTACTTCTCAGCCGGAG 58.623 55.000 5.05 0.00 45.49 4.63
7717 8715 4.389374 TGAAAGCTCTGGAAGTTACCTTG 58.611 43.478 0.00 0.00 33.76 3.61
7721 8719 3.927555 CTGGAAGTTACCTTGCGGA 57.072 52.632 0.00 0.00 45.48 5.54
7758 8756 3.407046 GACGGTCCCCATCGACGAC 62.407 68.421 0.00 0.00 33.30 4.34
7858 8856 1.739371 GCGACGGATTTAAGCCAGAGT 60.739 52.381 0.00 0.00 0.00 3.24
7859 8857 1.927174 CGACGGATTTAAGCCAGAGTG 59.073 52.381 0.00 0.00 0.00 3.51
7860 8858 2.416836 CGACGGATTTAAGCCAGAGTGA 60.417 50.000 0.00 0.00 0.00 3.41
7861 8859 3.738281 CGACGGATTTAAGCCAGAGTGAT 60.738 47.826 0.00 0.00 0.00 3.06
7862 8860 3.535561 ACGGATTTAAGCCAGAGTGATG 58.464 45.455 0.00 0.00 0.00 3.07
7863 8861 2.289002 CGGATTTAAGCCAGAGTGATGC 59.711 50.000 0.00 0.00 0.00 3.91
7864 8862 2.289002 GGATTTAAGCCAGAGTGATGCG 59.711 50.000 0.00 0.00 0.00 4.73
7865 8863 2.760634 TTTAAGCCAGAGTGATGCGA 57.239 45.000 0.00 0.00 0.00 5.10
7866 8864 2.760634 TTAAGCCAGAGTGATGCGAA 57.239 45.000 0.00 0.00 0.00 4.70
7867 8865 2.299993 TAAGCCAGAGTGATGCGAAG 57.700 50.000 0.00 0.00 0.00 3.79
7880 8878 4.277239 CGAAGCATCCCACGTTCA 57.723 55.556 0.00 0.00 0.00 3.18
7881 8879 2.767536 CGAAGCATCCCACGTTCAT 58.232 52.632 0.00 0.00 0.00 2.57
7882 8880 0.652592 CGAAGCATCCCACGTTCATC 59.347 55.000 0.00 0.00 0.00 2.92
7883 8881 1.017387 GAAGCATCCCACGTTCATCC 58.983 55.000 0.00 0.00 0.00 3.51
7884 8882 0.394352 AAGCATCCCACGTTCATCCC 60.394 55.000 0.00 0.00 0.00 3.85
7885 8883 1.224592 GCATCCCACGTTCATCCCT 59.775 57.895 0.00 0.00 0.00 4.20
7886 8884 0.468226 GCATCCCACGTTCATCCCTA 59.532 55.000 0.00 0.00 0.00 3.53
7887 8885 1.072331 GCATCCCACGTTCATCCCTAT 59.928 52.381 0.00 0.00 0.00 2.57
7888 8886 2.771089 CATCCCACGTTCATCCCTATG 58.229 52.381 0.00 0.00 0.00 2.23
7889 8887 1.874129 TCCCACGTTCATCCCTATGT 58.126 50.000 0.00 0.00 34.50 2.29
7890 8888 3.035055 TCCCACGTTCATCCCTATGTA 57.965 47.619 0.00 0.00 34.50 2.29
7891 8889 2.696707 TCCCACGTTCATCCCTATGTAC 59.303 50.000 0.00 0.00 34.50 2.90
7892 8890 2.432874 CCCACGTTCATCCCTATGTACA 59.567 50.000 0.00 0.00 34.11 2.90
7893 8891 3.454375 CCACGTTCATCCCTATGTACAC 58.546 50.000 0.00 0.00 34.11 2.90
7894 8892 3.132289 CCACGTTCATCCCTATGTACACT 59.868 47.826 0.00 0.00 34.11 3.55
7895 8893 4.360563 CACGTTCATCCCTATGTACACTC 58.639 47.826 0.00 0.00 34.11 3.51
7896 8894 4.098044 CACGTTCATCCCTATGTACACTCT 59.902 45.833 0.00 0.00 34.11 3.24
7897 8895 4.098044 ACGTTCATCCCTATGTACACTCTG 59.902 45.833 0.00 0.00 34.11 3.35
7898 8896 4.338400 CGTTCATCCCTATGTACACTCTGA 59.662 45.833 0.00 0.00 34.11 3.27
7899 8897 5.593010 GTTCATCCCTATGTACACTCTGAC 58.407 45.833 0.00 0.00 34.49 3.51
7900 8898 5.130705 TCATCCCTATGTACACTCTGACT 57.869 43.478 0.00 0.00 34.50 3.41
7901 8899 6.262056 TCATCCCTATGTACACTCTGACTA 57.738 41.667 0.00 0.00 34.50 2.59
7902 8900 6.062749 TCATCCCTATGTACACTCTGACTAC 58.937 44.000 0.00 0.00 34.50 2.73
7903 8901 5.712084 TCCCTATGTACACTCTGACTACT 57.288 43.478 0.00 0.00 0.00 2.57
7904 8902 5.682659 TCCCTATGTACACTCTGACTACTC 58.317 45.833 0.00 0.00 0.00 2.59
7905 8903 5.429109 TCCCTATGTACACTCTGACTACTCT 59.571 44.000 0.00 0.00 0.00 3.24
7906 8904 5.761234 CCCTATGTACACTCTGACTACTCTC 59.239 48.000 0.00 0.00 0.00 3.20
7907 8905 5.761234 CCTATGTACACTCTGACTACTCTCC 59.239 48.000 0.00 0.00 0.00 3.71
7908 8906 4.635699 TGTACACTCTGACTACTCTCCA 57.364 45.455 0.00 0.00 0.00 3.86
7909 8907 4.981812 TGTACACTCTGACTACTCTCCAA 58.018 43.478 0.00 0.00 0.00 3.53
7910 8908 5.382616 TGTACACTCTGACTACTCTCCAAA 58.617 41.667 0.00 0.00 0.00 3.28
7911 8909 6.010850 TGTACACTCTGACTACTCTCCAAAT 58.989 40.000 0.00 0.00 0.00 2.32
7912 8910 5.652994 ACACTCTGACTACTCTCCAAATC 57.347 43.478 0.00 0.00 0.00 2.17
7913 8911 4.464597 ACACTCTGACTACTCTCCAAATCC 59.535 45.833 0.00 0.00 0.00 3.01
7914 8912 4.709397 CACTCTGACTACTCTCCAAATCCT 59.291 45.833 0.00 0.00 0.00 3.24
7915 8913 5.888724 CACTCTGACTACTCTCCAAATCCTA 59.111 44.000 0.00 0.00 0.00 2.94
7916 8914 6.378564 CACTCTGACTACTCTCCAAATCCTAA 59.621 42.308 0.00 0.00 0.00 2.69
7917 8915 6.605594 ACTCTGACTACTCTCCAAATCCTAAG 59.394 42.308 0.00 0.00 0.00 2.18
7918 8916 6.732487 TCTGACTACTCTCCAAATCCTAAGA 58.268 40.000 0.00 0.00 0.00 2.10
7919 8917 6.831353 TCTGACTACTCTCCAAATCCTAAGAG 59.169 42.308 0.00 0.00 40.84 2.85
7920 8918 5.894393 TGACTACTCTCCAAATCCTAAGAGG 59.106 44.000 3.55 0.00 39.64 3.69
7933 8931 5.369409 TCCTAAGAGGACTTATGACGAGA 57.631 43.478 0.00 0.00 40.06 4.04
7934 8932 5.124645 TCCTAAGAGGACTTATGACGAGAC 58.875 45.833 0.00 0.00 40.06 3.36
7935 8933 4.276431 CCTAAGAGGACTTATGACGAGACC 59.724 50.000 0.00 0.00 37.67 3.85
7936 8934 3.655615 AGAGGACTTATGACGAGACCT 57.344 47.619 0.00 0.00 41.02 3.85
7937 8935 3.974871 GAGGACTTATGACGAGACCTC 57.025 52.381 6.83 6.83 44.50 3.85
7938 8936 3.367646 AGGACTTATGACGAGACCTCA 57.632 47.619 0.00 0.00 34.89 3.86
7939 8937 3.698289 AGGACTTATGACGAGACCTCAA 58.302 45.455 0.00 0.00 34.89 3.02
7940 8938 4.282496 AGGACTTATGACGAGACCTCAAT 58.718 43.478 0.00 0.00 34.89 2.57
7941 8939 4.712337 AGGACTTATGACGAGACCTCAATT 59.288 41.667 0.00 0.00 34.89 2.32
7942 8940 5.892119 AGGACTTATGACGAGACCTCAATTA 59.108 40.000 0.00 0.00 34.89 1.40
7943 8941 6.551601 AGGACTTATGACGAGACCTCAATTAT 59.448 38.462 0.00 0.00 34.89 1.28
7944 8942 7.724506 AGGACTTATGACGAGACCTCAATTATA 59.275 37.037 0.00 0.00 34.89 0.98
7945 8943 8.524487 GGACTTATGACGAGACCTCAATTATAT 58.476 37.037 0.00 0.00 0.00 0.86
7946 8944 9.347934 GACTTATGACGAGACCTCAATTATATG 57.652 37.037 0.00 0.00 0.00 1.78
7947 8945 8.861086 ACTTATGACGAGACCTCAATTATATGT 58.139 33.333 0.00 0.00 0.00 2.29
7948 8946 9.698309 CTTATGACGAGACCTCAATTATATGTT 57.302 33.333 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.866798 AACTAAAATGGTGTAAAACGGTTAAAA 57.133 25.926 0.00 0.00 0.00 1.52
6 7 6.696441 TGAACTAAAATGGTGTAAAACGGT 57.304 33.333 0.00 0.00 0.00 4.83
7 8 9.849166 ATATTGAACTAAAATGGTGTAAAACGG 57.151 29.630 0.00 0.00 0.00 4.44
20 21 8.682710 CGGAGGGATTTTCATATTGAACTAAAA 58.317 33.333 0.00 0.00 35.89 1.52
21 22 7.832187 ACGGAGGGATTTTCATATTGAACTAAA 59.168 33.333 0.00 0.00 35.89 1.85
22 23 7.282224 CACGGAGGGATTTTCATATTGAACTAA 59.718 37.037 0.00 0.00 35.89 2.24
23 24 6.765989 CACGGAGGGATTTTCATATTGAACTA 59.234 38.462 0.00 0.00 35.89 2.24
24 25 5.590259 CACGGAGGGATTTTCATATTGAACT 59.410 40.000 0.00 0.00 35.89 3.01
25 26 5.357032 ACACGGAGGGATTTTCATATTGAAC 59.643 40.000 0.00 0.00 35.89 3.18
26 27 5.505780 ACACGGAGGGATTTTCATATTGAA 58.494 37.500 0.00 0.00 34.03 2.69
27 28 5.110814 ACACGGAGGGATTTTCATATTGA 57.889 39.130 0.00 0.00 0.00 2.57
28 29 4.881273 TGACACGGAGGGATTTTCATATTG 59.119 41.667 0.00 0.00 0.00 1.90
29 30 5.110814 TGACACGGAGGGATTTTCATATT 57.889 39.130 0.00 0.00 0.00 1.28
30 31 4.771114 TGACACGGAGGGATTTTCATAT 57.229 40.909 0.00 0.00 0.00 1.78
31 32 4.561500 TTGACACGGAGGGATTTTCATA 57.438 40.909 0.00 0.00 0.00 2.15
32 33 3.433306 TTGACACGGAGGGATTTTCAT 57.567 42.857 0.00 0.00 0.00 2.57
33 34 2.882137 GTTTGACACGGAGGGATTTTCA 59.118 45.455 0.00 0.00 0.00 2.69
34 35 2.882137 TGTTTGACACGGAGGGATTTTC 59.118 45.455 0.00 0.00 0.00 2.29
35 36 2.884639 CTGTTTGACACGGAGGGATTTT 59.115 45.455 0.00 0.00 32.74 1.82
36 37 2.158667 ACTGTTTGACACGGAGGGATTT 60.159 45.455 0.00 0.00 35.45 2.17
37 38 1.420138 ACTGTTTGACACGGAGGGATT 59.580 47.619 0.00 0.00 35.45 3.01
38 39 1.056660 ACTGTTTGACACGGAGGGAT 58.943 50.000 0.00 0.00 35.45 3.85
39 40 0.105964 CACTGTTTGACACGGAGGGA 59.894 55.000 0.00 0.00 35.45 4.20
40 41 0.179056 ACACTGTTTGACACGGAGGG 60.179 55.000 0.00 0.00 35.45 4.30
41 42 1.597663 GAACACTGTTTGACACGGAGG 59.402 52.381 0.00 0.00 35.45 4.30
42 43 2.540101 GAGAACACTGTTTGACACGGAG 59.460 50.000 0.00 0.00 35.45 4.63
43 44 2.167693 AGAGAACACTGTTTGACACGGA 59.832 45.455 0.00 0.00 35.45 4.69
44 45 2.550978 AGAGAACACTGTTTGACACGG 58.449 47.619 0.00 0.00 37.84 4.94
45 46 4.150627 CCATAGAGAACACTGTTTGACACG 59.849 45.833 0.00 0.00 0.00 4.49
46 47 5.297547 TCCATAGAGAACACTGTTTGACAC 58.702 41.667 0.00 0.00 0.00 3.67
47 48 5.511373 CCTCCATAGAGAACACTGTTTGACA 60.511 44.000 0.00 0.00 43.39 3.58
48 49 4.932200 CCTCCATAGAGAACACTGTTTGAC 59.068 45.833 0.00 0.00 43.39 3.18
49 50 4.020218 CCCTCCATAGAGAACACTGTTTGA 60.020 45.833 0.00 0.00 43.39 2.69
50 51 4.256920 CCCTCCATAGAGAACACTGTTTG 58.743 47.826 0.00 0.00 43.39 2.93
51 52 3.264450 CCCCTCCATAGAGAACACTGTTT 59.736 47.826 0.00 0.00 43.39 2.83
52 53 2.840651 CCCCTCCATAGAGAACACTGTT 59.159 50.000 0.00 0.00 43.39 3.16
53 54 2.044492 TCCCCTCCATAGAGAACACTGT 59.956 50.000 0.00 0.00 43.39 3.55
54 55 2.752030 TCCCCTCCATAGAGAACACTG 58.248 52.381 0.00 0.00 43.39 3.66
55 56 3.491766 TTCCCCTCCATAGAGAACACT 57.508 47.619 0.00 0.00 43.39 3.55
56 57 4.779993 AATTCCCCTCCATAGAGAACAC 57.220 45.455 0.00 0.00 43.39 3.32
57 58 4.788075 TCAAATTCCCCTCCATAGAGAACA 59.212 41.667 0.00 0.00 43.39 3.18
58 59 5.372373 CTCAAATTCCCCTCCATAGAGAAC 58.628 45.833 0.00 0.00 43.39 3.01
59 60 4.413520 CCTCAAATTCCCCTCCATAGAGAA 59.586 45.833 0.00 0.00 43.39 2.87
60 61 3.976654 CCTCAAATTCCCCTCCATAGAGA 59.023 47.826 0.00 0.00 43.39 3.10
61 62 3.073650 CCCTCAAATTCCCCTCCATAGAG 59.926 52.174 0.00 0.00 40.09 2.43
62 63 3.056080 CCCTCAAATTCCCCTCCATAGA 58.944 50.000 0.00 0.00 0.00 1.98
63 64 3.056080 TCCCTCAAATTCCCCTCCATAG 58.944 50.000 0.00 0.00 0.00 2.23
64 65 3.159065 TCCCTCAAATTCCCCTCCATA 57.841 47.619 0.00 0.00 0.00 2.74
65 66 2.000290 TCCCTCAAATTCCCCTCCAT 58.000 50.000 0.00 0.00 0.00 3.41
66 67 1.570501 CATCCCTCAAATTCCCCTCCA 59.429 52.381 0.00 0.00 0.00 3.86
67 68 1.570979 ACATCCCTCAAATTCCCCTCC 59.429 52.381 0.00 0.00 0.00 4.30
68 69 2.024941 ACACATCCCTCAAATTCCCCTC 60.025 50.000 0.00 0.00 0.00 4.30
69 70 2.003072 ACACATCCCTCAAATTCCCCT 58.997 47.619 0.00 0.00 0.00 4.79
70 71 2.102578 CACACATCCCTCAAATTCCCC 58.897 52.381 0.00 0.00 0.00 4.81
71 72 2.102578 CCACACATCCCTCAAATTCCC 58.897 52.381 0.00 0.00 0.00 3.97
72 73 2.807676 ACCACACATCCCTCAAATTCC 58.192 47.619 0.00 0.00 0.00 3.01
73 74 3.056607 CCAACCACACATCCCTCAAATTC 60.057 47.826 0.00 0.00 0.00 2.17
74 75 2.899256 CCAACCACACATCCCTCAAATT 59.101 45.455 0.00 0.00 0.00 1.82
75 76 2.109834 TCCAACCACACATCCCTCAAAT 59.890 45.455 0.00 0.00 0.00 2.32
76 77 1.496857 TCCAACCACACATCCCTCAAA 59.503 47.619 0.00 0.00 0.00 2.69
77 78 1.073763 CTCCAACCACACATCCCTCAA 59.926 52.381 0.00 0.00 0.00 3.02
78 79 0.692476 CTCCAACCACACATCCCTCA 59.308 55.000 0.00 0.00 0.00 3.86
79 80 0.035056 CCTCCAACCACACATCCCTC 60.035 60.000 0.00 0.00 0.00 4.30
80 81 1.500783 CCCTCCAACCACACATCCCT 61.501 60.000 0.00 0.00 0.00 4.20
81 82 1.000896 CCCTCCAACCACACATCCC 60.001 63.158 0.00 0.00 0.00 3.85
82 83 1.000896 CCCCTCCAACCACACATCC 60.001 63.158 0.00 0.00 0.00 3.51
83 84 1.000896 CCCCCTCCAACCACACATC 60.001 63.158 0.00 0.00 0.00 3.06
84 85 0.850883 ATCCCCCTCCAACCACACAT 60.851 55.000 0.00 0.00 0.00 3.21
85 86 1.071314 AATCCCCCTCCAACCACACA 61.071 55.000 0.00 0.00 0.00 3.72
86 87 0.114364 AAATCCCCCTCCAACCACAC 59.886 55.000 0.00 0.00 0.00 3.82
87 88 0.114168 CAAATCCCCCTCCAACCACA 59.886 55.000 0.00 0.00 0.00 4.17
88 89 0.407918 TCAAATCCCCCTCCAACCAC 59.592 55.000 0.00 0.00 0.00 4.16
89 90 0.704076 CTCAAATCCCCCTCCAACCA 59.296 55.000 0.00 0.00 0.00 3.67
90 91 0.033109 CCTCAAATCCCCCTCCAACC 60.033 60.000 0.00 0.00 0.00 3.77
91 92 0.704664 ACCTCAAATCCCCCTCCAAC 59.295 55.000 0.00 0.00 0.00 3.77
92 93 1.466858 AACCTCAAATCCCCCTCCAA 58.533 50.000 0.00 0.00 0.00 3.53
93 94 1.357761 GAAACCTCAAATCCCCCTCCA 59.642 52.381 0.00 0.00 0.00 3.86
94 95 1.357761 TGAAACCTCAAATCCCCCTCC 59.642 52.381 0.00 0.00 0.00 4.30
95 96 2.899303 TGAAACCTCAAATCCCCCTC 57.101 50.000 0.00 0.00 0.00 4.30
96 97 2.721906 TCTTGAAACCTCAAATCCCCCT 59.278 45.455 0.00 0.00 41.05 4.79
97 98 3.092301 CTCTTGAAACCTCAAATCCCCC 58.908 50.000 0.00 0.00 41.05 5.40
98 99 4.034285 TCTCTTGAAACCTCAAATCCCC 57.966 45.455 0.00 0.00 41.05 4.81
99 100 6.393171 CAATTCTCTTGAAACCTCAAATCCC 58.607 40.000 0.00 0.00 41.05 3.85
100 101 6.209391 TCCAATTCTCTTGAAACCTCAAATCC 59.791 38.462 0.00 0.00 41.05 3.01
101 102 7.219484 TCCAATTCTCTTGAAACCTCAAATC 57.781 36.000 0.00 0.00 41.05 2.17
102 103 7.310237 CCATCCAATTCTCTTGAAACCTCAAAT 60.310 37.037 0.00 0.00 41.05 2.32
103 104 6.015180 CCATCCAATTCTCTTGAAACCTCAAA 60.015 38.462 0.00 0.00 41.05 2.69
104 105 5.477984 CCATCCAATTCTCTTGAAACCTCAA 59.522 40.000 0.00 0.00 39.30 3.02
105 106 5.012239 CCATCCAATTCTCTTGAAACCTCA 58.988 41.667 0.00 0.00 35.63 3.86
106 107 5.256474 TCCATCCAATTCTCTTGAAACCTC 58.744 41.667 0.00 0.00 35.63 3.85
107 108 5.261040 TCCATCCAATTCTCTTGAAACCT 57.739 39.130 0.00 0.00 35.63 3.50
108 109 5.711976 TCTTCCATCCAATTCTCTTGAAACC 59.288 40.000 0.00 0.00 35.63 3.27
109 110 6.127786 CCTCTTCCATCCAATTCTCTTGAAAC 60.128 42.308 0.00 0.00 35.63 2.78
110 111 5.948162 CCTCTTCCATCCAATTCTCTTGAAA 59.052 40.000 0.00 0.00 35.63 2.69
111 112 5.503927 CCTCTTCCATCCAATTCTCTTGAA 58.496 41.667 0.00 0.00 36.54 2.69
112 113 4.080129 CCCTCTTCCATCCAATTCTCTTGA 60.080 45.833 0.00 0.00 0.00 3.02
113 114 4.205587 CCCTCTTCCATCCAATTCTCTTG 58.794 47.826 0.00 0.00 0.00 3.02
114 115 3.203934 CCCCTCTTCCATCCAATTCTCTT 59.796 47.826 0.00 0.00 0.00 2.85
115 116 2.782341 CCCCTCTTCCATCCAATTCTCT 59.218 50.000 0.00 0.00 0.00 3.10
116 117 2.158549 CCCCCTCTTCCATCCAATTCTC 60.159 54.545 0.00 0.00 0.00 2.87
117 118 1.855599 CCCCCTCTTCCATCCAATTCT 59.144 52.381 0.00 0.00 0.00 2.40
118 119 1.852965 TCCCCCTCTTCCATCCAATTC 59.147 52.381 0.00 0.00 0.00 2.17
119 120 2.000290 TCCCCCTCTTCCATCCAATT 58.000 50.000 0.00 0.00 0.00 2.32
120 121 2.235530 ATCCCCCTCTTCCATCCAAT 57.764 50.000 0.00 0.00 0.00 3.16
121 122 1.852965 GAATCCCCCTCTTCCATCCAA 59.147 52.381 0.00 0.00 0.00 3.53
122 123 1.274943 TGAATCCCCCTCTTCCATCCA 60.275 52.381 0.00 0.00 0.00 3.41
123 124 1.143889 GTGAATCCCCCTCTTCCATCC 59.856 57.143 0.00 0.00 0.00 3.51
124 125 1.143889 GGTGAATCCCCCTCTTCCATC 59.856 57.143 0.00 0.00 0.00 3.51
125 126 1.226311 GGTGAATCCCCCTCTTCCAT 58.774 55.000 0.00 0.00 0.00 3.41
126 127 0.178846 TGGTGAATCCCCCTCTTCCA 60.179 55.000 0.00 0.00 34.77 3.53
127 128 0.999712 TTGGTGAATCCCCCTCTTCC 59.000 55.000 0.00 0.00 34.77 3.46
128 129 2.899303 TTTGGTGAATCCCCCTCTTC 57.101 50.000 0.00 0.00 34.77 2.87
129 130 3.388552 GATTTGGTGAATCCCCCTCTT 57.611 47.619 0.00 0.00 38.57 2.85
137 138 2.826674 TCCAGGGGATTTGGTGAATC 57.173 50.000 0.00 0.00 42.84 2.52
138 139 3.630828 GGATTCCAGGGGATTTGGTGAAT 60.631 47.826 0.00 0.00 37.02 2.57
139 140 2.292192 GGATTCCAGGGGATTTGGTGAA 60.292 50.000 0.00 0.00 37.02 3.18
140 141 1.287739 GGATTCCAGGGGATTTGGTGA 59.712 52.381 0.00 0.00 37.02 4.02
141 142 1.288932 AGGATTCCAGGGGATTTGGTG 59.711 52.381 5.29 0.00 37.02 4.17
142 143 1.570979 GAGGATTCCAGGGGATTTGGT 59.429 52.381 5.29 0.00 37.02 3.67
143 144 1.855599 AGAGGATTCCAGGGGATTTGG 59.144 52.381 5.29 0.00 37.04 3.28
144 145 2.158549 GGAGAGGATTCCAGGGGATTTG 60.159 54.545 5.29 0.00 37.20 2.32
145 146 2.139382 GGAGAGGATTCCAGGGGATTT 58.861 52.381 5.29 0.00 37.20 2.17
146 147 1.011293 TGGAGAGGATTCCAGGGGATT 59.989 52.381 5.29 0.00 42.24 3.01
147 148 0.649992 TGGAGAGGATTCCAGGGGAT 59.350 55.000 5.29 0.00 42.24 3.85
148 149 2.114388 TGGAGAGGATTCCAGGGGA 58.886 57.895 5.29 0.00 42.24 4.81
149 150 4.838307 TGGAGAGGATTCCAGGGG 57.162 61.111 5.29 0.00 42.24 4.79
153 154 1.909302 GTTGGAGTGGAGAGGATTCCA 59.091 52.381 5.29 0.00 44.84 3.53
154 155 1.210722 GGTTGGAGTGGAGAGGATTCC 59.789 57.143 0.00 0.00 37.77 3.01
155 156 1.210722 GGGTTGGAGTGGAGAGGATTC 59.789 57.143 0.00 0.00 0.00 2.52
156 157 1.203492 AGGGTTGGAGTGGAGAGGATT 60.203 52.381 0.00 0.00 0.00 3.01
157 158 0.419459 AGGGTTGGAGTGGAGAGGAT 59.581 55.000 0.00 0.00 0.00 3.24
158 159 0.252284 GAGGGTTGGAGTGGAGAGGA 60.252 60.000 0.00 0.00 0.00 3.71
159 160 1.268283 GGAGGGTTGGAGTGGAGAGG 61.268 65.000 0.00 0.00 0.00 3.69
160 161 0.545309 TGGAGGGTTGGAGTGGAGAG 60.545 60.000 0.00 0.00 0.00 3.20
161 162 0.836400 GTGGAGGGTTGGAGTGGAGA 60.836 60.000 0.00 0.00 0.00 3.71
162 163 1.127567 TGTGGAGGGTTGGAGTGGAG 61.128 60.000 0.00 0.00 0.00 3.86
163 164 0.696143 TTGTGGAGGGTTGGAGTGGA 60.696 55.000 0.00 0.00 0.00 4.02
164 165 0.405585 ATTGTGGAGGGTTGGAGTGG 59.594 55.000 0.00 0.00 0.00 4.00
165 166 1.614317 GGATTGTGGAGGGTTGGAGTG 60.614 57.143 0.00 0.00 0.00 3.51
166 167 0.698818 GGATTGTGGAGGGTTGGAGT 59.301 55.000 0.00 0.00 0.00 3.85
167 168 0.034089 GGGATTGTGGAGGGTTGGAG 60.034 60.000 0.00 0.00 0.00 3.86
168 169 0.477597 AGGGATTGTGGAGGGTTGGA 60.478 55.000 0.00 0.00 0.00 3.53
169 170 0.409484 AAGGGATTGTGGAGGGTTGG 59.591 55.000 0.00 0.00 0.00 3.77
170 171 2.308866 AGTAAGGGATTGTGGAGGGTTG 59.691 50.000 0.00 0.00 0.00 3.77
171 172 2.308866 CAGTAAGGGATTGTGGAGGGTT 59.691 50.000 0.00 0.00 0.00 4.11
172 173 1.916181 CAGTAAGGGATTGTGGAGGGT 59.084 52.381 0.00 0.00 0.00 4.34
173 174 1.916181 ACAGTAAGGGATTGTGGAGGG 59.084 52.381 0.00 0.00 0.00 4.30
174 175 2.571653 TGACAGTAAGGGATTGTGGAGG 59.428 50.000 0.00 0.00 0.00 4.30
175 176 3.981071 TGACAGTAAGGGATTGTGGAG 57.019 47.619 0.00 0.00 0.00 3.86
176 177 4.141367 TGTTTGACAGTAAGGGATTGTGGA 60.141 41.667 0.00 0.00 0.00 4.02
177 178 4.141287 TGTTTGACAGTAAGGGATTGTGG 58.859 43.478 0.00 0.00 0.00 4.17
178 179 5.278463 CCTTGTTTGACAGTAAGGGATTGTG 60.278 44.000 0.00 0.00 36.81 3.33
179 180 4.827284 CCTTGTTTGACAGTAAGGGATTGT 59.173 41.667 0.00 0.00 36.81 2.71
180 181 4.321230 GCCTTGTTTGACAGTAAGGGATTG 60.321 45.833 13.21 0.00 39.99 2.67
181 182 3.826729 GCCTTGTTTGACAGTAAGGGATT 59.173 43.478 13.21 0.00 39.99 3.01
182 183 3.421844 GCCTTGTTTGACAGTAAGGGAT 58.578 45.455 13.21 0.00 39.99 3.85
183 184 2.488347 GGCCTTGTTTGACAGTAAGGGA 60.488 50.000 0.00 0.00 39.99 4.20
184 185 1.886542 GGCCTTGTTTGACAGTAAGGG 59.113 52.381 0.00 0.86 39.99 3.95
185 186 2.863809 AGGCCTTGTTTGACAGTAAGG 58.136 47.619 0.00 9.06 42.00 2.69
186 187 6.381801 CATTTAGGCCTTGTTTGACAGTAAG 58.618 40.000 12.58 0.00 0.00 2.34
187 188 5.278758 GCATTTAGGCCTTGTTTGACAGTAA 60.279 40.000 12.58 0.00 0.00 2.24
188 189 4.217550 GCATTTAGGCCTTGTTTGACAGTA 59.782 41.667 12.58 0.00 0.00 2.74
189 190 3.005791 GCATTTAGGCCTTGTTTGACAGT 59.994 43.478 12.58 0.00 0.00 3.55
190 191 3.256631 AGCATTTAGGCCTTGTTTGACAG 59.743 43.478 12.58 0.00 0.00 3.51
191 192 3.230134 AGCATTTAGGCCTTGTTTGACA 58.770 40.909 12.58 0.00 0.00 3.58
192 193 3.942130 AGCATTTAGGCCTTGTTTGAC 57.058 42.857 12.58 0.00 0.00 3.18
193 194 4.262420 GGAAAGCATTTAGGCCTTGTTTGA 60.262 41.667 12.58 0.00 39.27 2.69
194 195 3.996363 GGAAAGCATTTAGGCCTTGTTTG 59.004 43.478 12.58 5.38 39.27 2.93
195 196 3.903714 AGGAAAGCATTTAGGCCTTGTTT 59.096 39.130 12.58 4.60 39.27 2.83
196 197 3.510459 AGGAAAGCATTTAGGCCTTGTT 58.490 40.909 12.58 0.00 39.27 2.83
197 198 3.092301 GAGGAAAGCATTTAGGCCTTGT 58.908 45.455 12.58 0.00 39.27 3.16
198 199 3.359950 AGAGGAAAGCATTTAGGCCTTG 58.640 45.455 12.58 4.05 39.27 3.61
199 200 3.268072 AGAGAGGAAAGCATTTAGGCCTT 59.732 43.478 12.58 0.00 39.27 4.35
200 201 2.849318 AGAGAGGAAAGCATTTAGGCCT 59.151 45.455 11.78 11.78 39.27 5.19
201 202 2.948315 CAGAGAGGAAAGCATTTAGGCC 59.052 50.000 0.00 0.00 39.27 5.19
202 203 2.357323 GCAGAGAGGAAAGCATTTAGGC 59.643 50.000 0.00 0.00 39.27 3.93
203 204 3.876320 GAGCAGAGAGGAAAGCATTTAGG 59.124 47.826 0.00 0.00 39.27 2.69
204 205 3.876320 GGAGCAGAGAGGAAAGCATTTAG 59.124 47.826 0.00 0.00 39.27 1.85
205 206 3.264193 TGGAGCAGAGAGGAAAGCATTTA 59.736 43.478 0.00 0.00 39.27 1.40
206 207 2.040813 TGGAGCAGAGAGGAAAGCATTT 59.959 45.455 0.00 0.00 43.98 2.32
256 257 1.385528 GGATATTGCGGGGTTTTCGT 58.614 50.000 0.00 0.00 0.00 3.85
259 260 0.033894 ACGGGATATTGCGGGGTTTT 60.034 50.000 0.00 0.00 0.00 2.43
271 272 3.959387 TCCCTGGATTGACGGGATA 57.041 52.632 0.00 0.00 41.95 2.59
272 273 4.829388 TCCCTGGATTGACGGGAT 57.171 55.556 0.00 0.00 41.95 3.85
277 278 0.034089 CCCTTGGTCCCTGGATTGAC 60.034 60.000 0.00 0.00 0.00 3.18
289 290 0.178903 TACCTCTGCTCACCCTTGGT 60.179 55.000 0.00 0.00 35.62 3.67
303 304 6.109359 TCTTATCTTTTGCTTCTGCTACCTC 58.891 40.000 0.00 0.00 40.48 3.85
354 356 7.037438 TCTTGTCGTTAACTTCTTTACTGTGT 58.963 34.615 3.71 0.00 0.00 3.72
406 408 5.047802 AGGACAATAAATGGAAGTGTGCAAG 60.048 40.000 0.00 0.00 33.47 4.01
424 426 1.512926 GCTTCTCGCAGAAAGGACAA 58.487 50.000 1.25 0.00 33.19 3.18
556 564 2.342648 GGAAGGTCACGCGGACTT 59.657 61.111 21.54 14.65 46.16 3.01
559 567 3.000819 ATGGGAAGGTCACGCGGA 61.001 61.111 12.47 1.33 0.00 5.54
638 646 2.448542 AGGGGAGGTGCTGTGTGT 60.449 61.111 0.00 0.00 0.00 3.72
659 667 2.367512 CAGGGAAGGGAGGGAGGG 60.368 72.222 0.00 0.00 0.00 4.30
687 707 2.978018 GCGCTGTGTACTTTGGGGC 61.978 63.158 0.00 0.00 0.00 5.80
690 710 1.599518 TGGGCGCTGTGTACTTTGG 60.600 57.895 7.64 0.00 0.00 3.28
692 712 1.959226 CGTGGGCGCTGTGTACTTT 60.959 57.895 7.64 0.00 0.00 2.66
790 817 3.711704 AGAGAGAGAGAGTAGGAGTCCAG 59.288 52.174 12.86 0.00 0.00 3.86
791 818 3.709653 GAGAGAGAGAGAGTAGGAGTCCA 59.290 52.174 12.86 0.00 0.00 4.02
793 820 4.896482 AGAGAGAGAGAGAGAGTAGGAGTC 59.104 50.000 0.00 0.00 0.00 3.36
794 821 4.884961 AGAGAGAGAGAGAGAGTAGGAGT 58.115 47.826 0.00 0.00 0.00 3.85
796 823 4.833380 GCTAGAGAGAGAGAGAGAGTAGGA 59.167 50.000 0.00 0.00 0.00 2.94
798 825 4.321304 CGGCTAGAGAGAGAGAGAGAGTAG 60.321 54.167 0.00 0.00 0.00 2.57
799 826 3.572682 CGGCTAGAGAGAGAGAGAGAGTA 59.427 52.174 0.00 0.00 0.00 2.59
800 827 2.365617 CGGCTAGAGAGAGAGAGAGAGT 59.634 54.545 0.00 0.00 0.00 3.24
801 828 2.628178 TCGGCTAGAGAGAGAGAGAGAG 59.372 54.545 0.00 0.00 0.00 3.20
802 829 2.673258 TCGGCTAGAGAGAGAGAGAGA 58.327 52.381 0.00 0.00 0.00 3.10
803 830 3.685139 ATCGGCTAGAGAGAGAGAGAG 57.315 52.381 0.00 0.00 0.00 3.20
804 831 4.385825 GAAATCGGCTAGAGAGAGAGAGA 58.614 47.826 0.00 0.00 0.00 3.10
805 832 3.186409 CGAAATCGGCTAGAGAGAGAGAG 59.814 52.174 0.00 0.00 35.37 3.20
806 833 3.135225 CGAAATCGGCTAGAGAGAGAGA 58.865 50.000 0.00 0.00 35.37 3.10
807 834 2.350388 GCGAAATCGGCTAGAGAGAGAG 60.350 54.545 4.84 0.00 40.23 3.20
808 835 1.604755 GCGAAATCGGCTAGAGAGAGA 59.395 52.381 4.84 0.00 40.23 3.10
817 844 2.764314 GGTGCATGCGAAATCGGCT 61.764 57.895 14.09 0.00 40.23 5.52
821 858 2.278142 GCCGGTGCATGCGAAATC 60.278 61.111 14.09 0.00 37.47 2.17
879 916 1.848886 GCGGGGGAAAAGAGAAGGGA 61.849 60.000 0.00 0.00 0.00 4.20
884 921 3.712907 CCGGCGGGGGAAAAGAGA 61.713 66.667 20.56 0.00 0.00 3.10
923 961 0.912006 ACCCTCCCTTCTTCTCAGGC 60.912 60.000 0.00 0.00 0.00 4.85
1234 1533 8.679100 TGGAAGACGGTAAAACAAATTATATGG 58.321 33.333 0.00 0.00 0.00 2.74
1237 1536 9.504708 TCTTGGAAGACGGTAAAACAAATTATA 57.495 29.630 0.00 0.00 0.00 0.98
1238 1537 8.398878 TCTTGGAAGACGGTAAAACAAATTAT 57.601 30.769 0.00 0.00 0.00 1.28
1239 1538 7.804843 TCTTGGAAGACGGTAAAACAAATTA 57.195 32.000 0.00 0.00 0.00 1.40
1317 1618 7.578736 GTCAAATGCTAAACAATGAAACGTTTG 59.421 33.333 20.10 7.25 36.10 2.93
1321 1622 5.662815 GCGTCAAATGCTAAACAATGAAACG 60.663 40.000 0.00 0.00 32.06 3.60
1558 1907 4.261280 CGAACACAACGGGGAAAATAAACT 60.261 41.667 0.00 0.00 0.00 2.66
1737 2088 2.923020 CACCAATTTGACTTAATGCCGC 59.077 45.455 0.00 0.00 0.00 6.53
1754 2105 8.554528 CACACATGCAAAATTTTAAATACACCA 58.445 29.630 2.44 0.00 0.00 4.17
1832 2183 5.930135 ACCTTACTGTAAATAGCATCTGGG 58.070 41.667 1.46 0.00 0.00 4.45
1875 2226 6.688813 GCAACAACAACAACAACAAAAAGAAA 59.311 30.769 0.00 0.00 0.00 2.52
1877 2228 5.525378 AGCAACAACAACAACAACAAAAAGA 59.475 32.000 0.00 0.00 0.00 2.52
1878 2229 5.746539 AGCAACAACAACAACAACAAAAAG 58.253 33.333 0.00 0.00 0.00 2.27
1879 2230 5.741388 AGCAACAACAACAACAACAAAAA 57.259 30.435 0.00 0.00 0.00 1.94
1881 2232 5.294306 TGAAAGCAACAACAACAACAACAAA 59.706 32.000 0.00 0.00 0.00 2.83
1883 2234 4.371786 TGAAAGCAACAACAACAACAACA 58.628 34.783 0.00 0.00 0.00 3.33
1884 2235 4.981389 TGAAAGCAACAACAACAACAAC 57.019 36.364 0.00 0.00 0.00 3.32
1885 2236 5.991328 TTTGAAAGCAACAACAACAACAA 57.009 30.435 0.00 0.00 32.79 2.83
1889 2240 7.865385 GGAGTATATTTGAAAGCAACAACAACA 59.135 33.333 0.00 0.00 32.79 3.33
1890 2241 7.328493 GGGAGTATATTTGAAAGCAACAACAAC 59.672 37.037 0.00 0.00 32.79 3.32
1891 2242 7.014711 TGGGAGTATATTTGAAAGCAACAACAA 59.985 33.333 0.00 0.00 32.79 2.83
1892 2243 6.491745 TGGGAGTATATTTGAAAGCAACAACA 59.508 34.615 0.00 0.00 32.79 3.33
1893 2244 6.919721 TGGGAGTATATTTGAAAGCAACAAC 58.080 36.000 0.00 0.00 32.79 3.32
1894 2245 7.716799 ATGGGAGTATATTTGAAAGCAACAA 57.283 32.000 0.00 0.00 32.79 2.83
1895 2246 7.395772 TCAATGGGAGTATATTTGAAAGCAACA 59.604 33.333 0.00 0.00 32.79 3.33
1896 2247 7.702348 GTCAATGGGAGTATATTTGAAAGCAAC 59.298 37.037 0.00 0.00 32.79 4.17
1947 2298 4.463539 TGTGCTGCCATCTACAAAAATGAT 59.536 37.500 0.00 0.00 0.00 2.45
6381 7247 0.175989 GATCAGTGGGAGGAACGTCC 59.824 60.000 5.14 5.14 36.58 4.79
6382 7248 0.895530 TGATCAGTGGGAGGAACGTC 59.104 55.000 0.00 0.00 0.00 4.34
6383 7249 0.898320 CTGATCAGTGGGAGGAACGT 59.102 55.000 14.95 0.00 0.00 3.99
6384 7250 0.176680 CCTGATCAGTGGGAGGAACG 59.823 60.000 21.11 0.00 0.00 3.95
6385 7251 1.065854 CACCTGATCAGTGGGAGGAAC 60.066 57.143 21.11 0.00 0.00 3.62
6386 7252 1.203300 TCACCTGATCAGTGGGAGGAA 60.203 52.381 21.11 1.07 0.00 3.36
6387 7253 0.413434 TCACCTGATCAGTGGGAGGA 59.587 55.000 21.11 7.95 0.00 3.71
6388 7254 1.140452 CATCACCTGATCAGTGGGAGG 59.860 57.143 21.11 15.89 31.21 4.30
6389 7255 2.113807 TCATCACCTGATCAGTGGGAG 58.886 52.381 21.11 8.07 31.21 4.30
6390 7256 1.833630 GTCATCACCTGATCAGTGGGA 59.166 52.381 21.11 18.09 35.97 4.37
6391 7257 1.836166 AGTCATCACCTGATCAGTGGG 59.164 52.381 21.11 13.58 35.97 4.61
6392 7258 2.498885 TCAGTCATCACCTGATCAGTGG 59.501 50.000 21.11 10.58 35.97 4.00
6393 7259 3.881937 TCAGTCATCACCTGATCAGTG 57.118 47.619 21.11 17.71 35.97 3.66
6394 7260 3.369261 GCTTCAGTCATCACCTGATCAGT 60.369 47.826 21.11 6.95 38.66 3.41
6395 7261 3.196463 GCTTCAGTCATCACCTGATCAG 58.804 50.000 16.24 16.24 38.66 2.90
6396 7262 2.093288 GGCTTCAGTCATCACCTGATCA 60.093 50.000 0.00 0.00 38.66 2.92
6397 7263 2.559440 GGCTTCAGTCATCACCTGATC 58.441 52.381 0.00 0.00 38.66 2.92
6398 7264 1.211457 GGGCTTCAGTCATCACCTGAT 59.789 52.381 0.00 0.00 38.66 2.90
6399 7265 0.615331 GGGCTTCAGTCATCACCTGA 59.385 55.000 0.00 0.00 37.18 3.86
6400 7266 0.393537 GGGGCTTCAGTCATCACCTG 60.394 60.000 0.00 0.00 0.00 4.00
6401 7267 0.548682 AGGGGCTTCAGTCATCACCT 60.549 55.000 0.00 0.00 0.00 4.00
6402 7268 0.393537 CAGGGGCTTCAGTCATCACC 60.394 60.000 0.00 0.00 0.00 4.02
6403 7269 0.393537 CCAGGGGCTTCAGTCATCAC 60.394 60.000 0.00 0.00 0.00 3.06
6404 7270 0.547471 TCCAGGGGCTTCAGTCATCA 60.547 55.000 0.00 0.00 0.00 3.07
6405 7271 0.179936 CTCCAGGGGCTTCAGTCATC 59.820 60.000 0.00 0.00 0.00 2.92
6406 7272 1.277580 CCTCCAGGGGCTTCAGTCAT 61.278 60.000 0.00 0.00 0.00 3.06
6407 7273 1.920325 CCTCCAGGGGCTTCAGTCA 60.920 63.158 0.00 0.00 0.00 3.41
6408 7274 1.904990 GACCTCCAGGGGCTTCAGTC 61.905 65.000 0.00 0.00 40.87 3.51
6409 7275 1.920835 GACCTCCAGGGGCTTCAGT 60.921 63.158 0.00 0.00 40.87 3.41
6410 7276 1.908340 CTGACCTCCAGGGGCTTCAG 61.908 65.000 2.44 2.44 45.52 3.02
6411 7277 1.920325 CTGACCTCCAGGGGCTTCA 60.920 63.158 0.00 0.00 45.52 3.02
6412 7278 2.993853 CTGACCTCCAGGGGCTTC 59.006 66.667 0.00 0.00 45.52 3.86
6420 7286 1.461268 TGGCTTGGACTGACCTCCA 60.461 57.895 0.00 0.31 38.66 3.86
6421 7287 1.003233 GTGGCTTGGACTGACCTCC 60.003 63.158 0.00 0.00 39.86 4.30
6422 7288 1.003233 GGTGGCTTGGACTGACCTC 60.003 63.158 0.00 0.00 39.86 3.85
6423 7289 1.770110 TGGTGGCTTGGACTGACCT 60.770 57.895 0.00 0.00 39.86 3.85
6424 7290 1.302832 CTGGTGGCTTGGACTGACC 60.303 63.158 0.00 0.00 39.54 4.02
6425 7291 1.968540 GCTGGTGGCTTGGACTGAC 60.969 63.158 0.00 0.00 38.06 3.51
6426 7292 2.431683 GCTGGTGGCTTGGACTGA 59.568 61.111 0.00 0.00 38.06 3.41
6435 7301 1.751927 CTTGGATGGAGCTGGTGGC 60.752 63.158 0.00 0.00 42.19 5.01
6436 7302 1.077212 CCTTGGATGGAGCTGGTGG 60.077 63.158 0.00 0.00 0.00 4.61
6437 7303 0.393537 GTCCTTGGATGGAGCTGGTG 60.394 60.000 0.00 0.00 36.69 4.17
6438 7304 1.903877 CGTCCTTGGATGGAGCTGGT 61.904 60.000 0.00 0.00 36.69 4.00
6439 7305 1.153289 CGTCCTTGGATGGAGCTGG 60.153 63.158 0.00 0.00 36.69 4.85
6440 7306 0.036010 AACGTCCTTGGATGGAGCTG 60.036 55.000 12.86 0.00 36.69 4.24
6441 7307 0.250513 GAACGTCCTTGGATGGAGCT 59.749 55.000 12.86 0.00 36.69 4.09
6442 7308 0.744771 GGAACGTCCTTGGATGGAGC 60.745 60.000 12.86 2.55 36.69 4.70
6443 7309 0.905357 AGGAACGTCCTTGGATGGAG 59.095 55.000 12.86 0.00 46.91 3.86
6444 7310 0.613260 CAGGAACGTCCTTGGATGGA 59.387 55.000 12.86 0.00 46.91 3.41
6445 7311 1.026718 GCAGGAACGTCCTTGGATGG 61.027 60.000 12.86 2.15 46.91 3.51
6446 7312 0.036010 AGCAGGAACGTCCTTGGATG 60.036 55.000 7.29 7.29 46.91 3.51
6447 7313 0.036010 CAGCAGGAACGTCCTTGGAT 60.036 55.000 4.08 0.00 46.91 3.41
6448 7314 1.371183 CAGCAGGAACGTCCTTGGA 59.629 57.895 4.08 0.00 46.91 3.53
6449 7315 0.951040 GACAGCAGGAACGTCCTTGG 60.951 60.000 4.08 1.03 46.91 3.61
6747 7694 1.134128 ACGGCAGCAATGTCCATGATA 60.134 47.619 0.00 0.00 0.00 2.15
6765 7712 1.227380 GGTCATAGCTGGAGGCACG 60.227 63.158 0.00 0.00 44.79 5.34
7156 8129 3.008375 AGCTAACTCCATGCTTCAGTTCA 59.992 43.478 0.00 0.00 32.61 3.18
7401 8391 5.663456 AGACCGTTTTTGACACTAGTGTAA 58.337 37.500 27.98 19.07 45.05 2.41
7421 8412 6.597280 ACTCCGTCCGTCCTATAATATAAGAC 59.403 42.308 0.12 0.12 0.00 3.01
7441 8434 0.855349 GCACGCAGAATGATACTCCG 59.145 55.000 0.00 0.00 39.69 4.63
7493 8486 5.477510 GCATGTTCACAAAAATACCATGGA 58.522 37.500 21.47 2.01 0.00 3.41
7501 8494 5.110940 GCAAATGGCATGTTCACAAAAAT 57.889 34.783 0.00 0.00 43.97 1.82
7525 8518 6.871492 AGTGTCATATGAACATACGTTTCACA 59.129 34.615 7.07 0.00 34.75 3.58
7533 8526 7.912056 ATATGGCAGTGTCATATGAACATAC 57.088 36.000 25.73 4.94 39.07 2.39
7548 8541 7.921139 GCATTTCAATGGTGCATATGGCAGT 62.921 44.000 4.56 0.00 44.28 4.40
7549 8542 5.561040 GCATTTCAATGGTGCATATGGCAG 61.561 45.833 4.56 0.00 44.28 4.85
7550 8543 3.741700 GCATTTCAATGGTGCATATGGCA 60.742 43.478 4.56 0.00 42.75 4.92
7551 8544 2.803956 GCATTTCAATGGTGCATATGGC 59.196 45.455 4.56 0.00 38.68 4.40
7552 8545 4.061357 TGCATTTCAATGGTGCATATGG 57.939 40.909 4.56 0.00 43.30 2.74
7576 8574 4.696479 ATTTGACCCAGGATAGCAGTAG 57.304 45.455 0.00 0.00 0.00 2.57
7582 8580 4.827835 TCGTCTCTATTTGACCCAGGATAG 59.172 45.833 0.00 0.00 0.00 2.08
7637 8635 5.049828 CGAGCATGTACAATCCACATTCTA 58.950 41.667 0.00 0.00 34.39 2.10
7651 8649 4.694037 AGTACGTATATCAGCGAGCATGTA 59.306 41.667 0.00 0.00 0.00 2.29
7681 8679 1.597742 CTTTCATACCATGGCTCCGG 58.402 55.000 13.04 0.00 0.00 5.14
7686 8684 1.952296 CCAGAGCTTTCATACCATGGC 59.048 52.381 13.04 0.00 0.00 4.40
7717 8715 5.815740 TCTTCCAAAAATACAGTATCTCCGC 59.184 40.000 0.00 0.00 0.00 5.54
7721 8719 6.708285 ACCGTCTTCCAAAAATACAGTATCT 58.292 36.000 0.00 0.00 0.00 1.98
7758 8756 0.668706 GATCGATCCACCGCATCTGG 60.669 60.000 14.76 0.00 0.00 3.86
7797 8795 4.083600 GTTGGACGCGCGCATGAA 62.084 61.111 32.58 14.91 0.00 2.57
7849 8847 1.023513 GCTTCGCATCACTCTGGCTT 61.024 55.000 0.00 0.00 0.00 4.35
7861 8859 2.031919 AACGTGGGATGCTTCGCA 59.968 55.556 14.35 14.35 44.86 5.10
7862 8860 1.369091 ATGAACGTGGGATGCTTCGC 61.369 55.000 9.44 9.44 35.46 4.70
7863 8861 0.652592 GATGAACGTGGGATGCTTCG 59.347 55.000 0.00 1.13 0.00 3.79
7864 8862 1.017387 GGATGAACGTGGGATGCTTC 58.983 55.000 0.00 0.00 0.00 3.86
7865 8863 0.394352 GGGATGAACGTGGGATGCTT 60.394 55.000 0.00 0.00 0.00 3.91
7866 8864 1.224592 GGGATGAACGTGGGATGCT 59.775 57.895 0.00 0.00 0.00 3.79
7867 8865 0.468226 TAGGGATGAACGTGGGATGC 59.532 55.000 0.00 0.00 0.00 3.91
7868 8866 2.104792 ACATAGGGATGAACGTGGGATG 59.895 50.000 0.00 0.00 36.48 3.51
7869 8867 2.408565 ACATAGGGATGAACGTGGGAT 58.591 47.619 0.00 0.00 36.48 3.85
7870 8868 1.874129 ACATAGGGATGAACGTGGGA 58.126 50.000 0.00 0.00 36.48 4.37
7871 8869 2.432874 TGTACATAGGGATGAACGTGGG 59.567 50.000 0.00 0.00 36.48 4.61
7872 8870 3.132289 AGTGTACATAGGGATGAACGTGG 59.868 47.826 0.00 0.00 36.48 4.94
7873 8871 4.098044 AGAGTGTACATAGGGATGAACGTG 59.902 45.833 0.00 0.00 36.48 4.49
7874 8872 4.098044 CAGAGTGTACATAGGGATGAACGT 59.902 45.833 0.00 0.00 36.48 3.99
7875 8873 4.338400 TCAGAGTGTACATAGGGATGAACG 59.662 45.833 0.00 0.00 36.48 3.95
7876 8874 5.361285 AGTCAGAGTGTACATAGGGATGAAC 59.639 44.000 0.00 0.00 36.48 3.18
7877 8875 5.519808 AGTCAGAGTGTACATAGGGATGAA 58.480 41.667 0.00 0.00 36.48 2.57
7878 8876 5.130705 AGTCAGAGTGTACATAGGGATGA 57.869 43.478 0.00 0.00 36.48 2.92
7879 8877 6.065374 AGTAGTCAGAGTGTACATAGGGATG 58.935 44.000 0.00 0.00 39.16 3.51
7880 8878 6.102027 AGAGTAGTCAGAGTGTACATAGGGAT 59.898 42.308 0.00 0.00 0.00 3.85
7881 8879 5.429109 AGAGTAGTCAGAGTGTACATAGGGA 59.571 44.000 0.00 0.00 0.00 4.20
7882 8880 5.686753 AGAGTAGTCAGAGTGTACATAGGG 58.313 45.833 0.00 0.00 0.00 3.53
7883 8881 5.761234 GGAGAGTAGTCAGAGTGTACATAGG 59.239 48.000 0.00 0.00 0.00 2.57
7884 8882 6.350103 TGGAGAGTAGTCAGAGTGTACATAG 58.650 44.000 0.00 0.00 0.00 2.23
7885 8883 6.309389 TGGAGAGTAGTCAGAGTGTACATA 57.691 41.667 0.00 0.00 0.00 2.29
7886 8884 5.180810 TGGAGAGTAGTCAGAGTGTACAT 57.819 43.478 0.00 0.00 0.00 2.29
7887 8885 4.635699 TGGAGAGTAGTCAGAGTGTACA 57.364 45.455 0.00 0.00 0.00 2.90
7888 8886 5.961396 TTTGGAGAGTAGTCAGAGTGTAC 57.039 43.478 0.00 0.00 0.00 2.90
7889 8887 5.652891 GGATTTGGAGAGTAGTCAGAGTGTA 59.347 44.000 0.00 0.00 0.00 2.90
7890 8888 4.464597 GGATTTGGAGAGTAGTCAGAGTGT 59.535 45.833 0.00 0.00 0.00 3.55
7891 8889 4.709397 AGGATTTGGAGAGTAGTCAGAGTG 59.291 45.833 0.00 0.00 0.00 3.51
7892 8890 4.941713 AGGATTTGGAGAGTAGTCAGAGT 58.058 43.478 0.00 0.00 0.00 3.24
7893 8891 6.831353 TCTTAGGATTTGGAGAGTAGTCAGAG 59.169 42.308 0.00 0.00 0.00 3.35
7894 8892 6.732487 TCTTAGGATTTGGAGAGTAGTCAGA 58.268 40.000 0.00 0.00 0.00 3.27
7895 8893 6.040391 CCTCTTAGGATTTGGAGAGTAGTCAG 59.960 46.154 0.00 0.00 37.67 3.51
7896 8894 5.894393 CCTCTTAGGATTTGGAGAGTAGTCA 59.106 44.000 0.00 0.00 37.67 3.41
7897 8895 6.130569 TCCTCTTAGGATTTGGAGAGTAGTC 58.869 44.000 0.00 0.00 40.06 2.59
7898 8896 6.093617 TCCTCTTAGGATTTGGAGAGTAGT 57.906 41.667 0.00 0.00 40.06 2.73
7911 8909 5.124645 GTCTCGTCATAAGTCCTCTTAGGA 58.875 45.833 0.00 0.00 43.43 2.94
7912 8910 4.276431 GGTCTCGTCATAAGTCCTCTTAGG 59.724 50.000 0.00 0.00 39.17 2.69
7913 8911 5.127491 AGGTCTCGTCATAAGTCCTCTTAG 58.873 45.833 0.00 0.00 39.17 2.18
7914 8912 5.113446 AGGTCTCGTCATAAGTCCTCTTA 57.887 43.478 0.00 0.00 39.95 2.10
7915 8913 3.949113 GAGGTCTCGTCATAAGTCCTCTT 59.051 47.826 8.55 0.00 42.37 2.85
7916 8914 3.054287 TGAGGTCTCGTCATAAGTCCTCT 60.054 47.826 14.50 0.00 44.49 3.69
7917 8915 3.280295 TGAGGTCTCGTCATAAGTCCTC 58.720 50.000 8.79 8.79 44.47 3.71
7918 8916 3.367646 TGAGGTCTCGTCATAAGTCCT 57.632 47.619 0.00 0.00 35.39 3.85
7919 8917 4.657436 ATTGAGGTCTCGTCATAAGTCC 57.343 45.455 0.00 0.00 0.00 3.85
7920 8918 9.347934 CATATAATTGAGGTCTCGTCATAAGTC 57.652 37.037 0.00 0.00 0.00 3.01
7921 8919 8.861086 ACATATAATTGAGGTCTCGTCATAAGT 58.139 33.333 0.00 0.00 0.00 2.24
7922 8920 9.698309 AACATATAATTGAGGTCTCGTCATAAG 57.302 33.333 0.00 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.