Multiple sequence alignment - TraesCS5B01G203600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G203600 chr5B 100.000 3108 0 0 1 3108 370452292 370449185 0.000000e+00 5740
1 TraesCS5B01G203600 chr5D 94.612 2617 120 15 487 3097 319734744 319732143 0.000000e+00 4032
2 TraesCS5B01G203600 chr5D 86.726 113 11 3 377 488 92532690 92532581 4.210000e-24 122
3 TraesCS5B01G203600 chr5D 83.607 122 12 7 377 496 519663244 519663359 1.180000e-19 108
4 TraesCS5B01G203600 chr5A 95.351 1850 73 7 486 2324 414299673 414297826 0.000000e+00 2928
5 TraesCS5B01G203600 chr5A 92.282 609 35 8 2339 2939 414297733 414297129 0.000000e+00 854
6 TraesCS5B01G203600 chr5A 92.784 194 14 0 2915 3108 414296744 414296551 6.560000e-72 281
7 TraesCS5B01G203600 chr5A 93.706 143 9 0 233 375 524008539 524008681 6.750000e-52 215
8 TraesCS5B01G203600 chr5A 90.625 160 13 1 233 392 571753938 571753781 8.730000e-51 211
9 TraesCS5B01G203600 chr4B 96.296 567 18 2 1814 2380 351298222 351298785 0.000000e+00 928
10 TraesCS5B01G203600 chr4B 95.271 571 26 1 1814 2384 257299757 257299188 0.000000e+00 904
11 TraesCS5B01G203600 chr4B 93.871 310 19 0 2075 2384 257273080 257272771 4.690000e-128 468
12 TraesCS5B01G203600 chr2B 95.230 566 24 3 1814 2379 574921239 574920677 0.000000e+00 893
13 TraesCS5B01G203600 chr2B 89.000 100 9 2 377 476 459815404 459815307 4.210000e-24 122
14 TraesCS5B01G203600 chr2B 86.207 116 5 6 378 493 184514848 184514744 7.040000e-22 115
15 TraesCS5B01G203600 chr2B 84.821 112 13 3 377 488 508242940 508242833 3.280000e-20 110
16 TraesCS5B01G203600 chr2D 91.367 417 15 3 1315 1731 321172353 321171958 4.530000e-153 551
17 TraesCS5B01G203600 chr2D 86.916 107 12 2 1 105 522389150 522389256 5.440000e-23 119
18 TraesCS5B01G203600 chr6B 94.406 143 8 0 233 375 675396075 675395933 1.450000e-53 220
19 TraesCS5B01G203600 chr7B 93.706 143 9 0 233 375 728122551 728122409 6.750000e-52 215
20 TraesCS5B01G203600 chr7B 88.750 160 13 4 233 389 705328227 705328384 1.140000e-44 191
21 TraesCS5B01G203600 chr3D 93.706 143 9 0 233 375 506036918 506037060 6.750000e-52 215
22 TraesCS5B01G203600 chr3D 87.500 112 10 3 377 488 159622969 159623076 3.250000e-25 126
23 TraesCS5B01G203600 chr2A 93.706 143 9 0 233 375 611294119 611294261 6.750000e-52 215
24 TraesCS5B01G203600 chr2A 90.654 107 8 2 1 105 673515343 673515237 1.160000e-29 141
25 TraesCS5B01G203600 chr2A 88.785 107 10 2 1 105 651997613 651997507 2.520000e-26 130
26 TraesCS5B01G203600 chr3B 92.105 152 11 1 233 383 412591405 412591556 2.430000e-51 213
27 TraesCS5B01G203600 chr1B 87.047 193 19 5 189 375 1279028 1279220 2.430000e-51 213
28 TraesCS5B01G203600 chr1B 86.528 193 19 6 189 375 1271912 1272103 4.060000e-49 206
29 TraesCS5B01G203600 chr1B 88.485 165 15 3 240 401 74848506 74848343 2.450000e-46 196
30 TraesCS5B01G203600 chr1B 87.143 140 17 1 233 372 165070886 165071024 1.150000e-34 158
31 TraesCS5B01G203600 chr6A 85.366 164 20 4 243 404 16557316 16557477 1.920000e-37 167
32 TraesCS5B01G203600 chr1A 87.736 106 12 1 1 105 72601988 72602093 4.210000e-24 122
33 TraesCS5B01G203600 chr1D 86.486 111 14 1 1 110 473878375 473878485 1.510000e-23 121
34 TraesCS5B01G203600 chr7D 85.841 113 9 3 377 489 631843500 631843605 2.530000e-21 113
35 TraesCS5B01G203600 chr7A 85.321 109 11 3 381 489 706517298 706517195 1.180000e-19 108
36 TraesCS5B01G203600 chr7A 82.707 133 9 10 360 492 347636352 347636234 4.240000e-19 106
37 TraesCS5B01G203600 chr4A 84.906 106 10 4 1 105 251408061 251408161 5.480000e-18 102
38 TraesCS5B01G203600 chr4A 84.906 106 10 4 1 105 251456437 251456537 5.480000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G203600 chr5B 370449185 370452292 3107 True 5740.000000 5740 100.000000 1 3108 1 chr5B.!!$R1 3107
1 TraesCS5B01G203600 chr5D 319732143 319734744 2601 True 4032.000000 4032 94.612000 487 3097 1 chr5D.!!$R2 2610
2 TraesCS5B01G203600 chr5A 414296551 414299673 3122 True 1354.333333 2928 93.472333 486 3108 3 chr5A.!!$R2 2622
3 TraesCS5B01G203600 chr4B 351298222 351298785 563 False 928.000000 928 96.296000 1814 2380 1 chr4B.!!$F1 566
4 TraesCS5B01G203600 chr4B 257299188 257299757 569 True 904.000000 904 95.271000 1814 2384 1 chr4B.!!$R2 570
5 TraesCS5B01G203600 chr2B 574920677 574921239 562 True 893.000000 893 95.230000 1814 2379 1 chr2B.!!$R4 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
210 211 0.096976 GCGCACACACACACCATATC 59.903 55.0 0.30 0.0 0.0 1.63 F
256 257 0.112606 AGAACGTCTCCTCCCACTGA 59.887 55.0 0.00 0.0 0.0 3.41 F
1391 1395 0.041386 AGGAGAAGTACGAGGGCCTT 59.959 55.0 7.89 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1285 1289 2.364970 AGAATCATCTGCGAGGAGAAGG 59.635 50.0 0.00 0.0 33.59 3.46 R
1462 1466 2.814336 GCCTTGAGGTAGTTGTTCTTGG 59.186 50.0 0.00 0.0 37.57 3.61 R
2810 2906 0.036732 AAGAGCGCATCCCAAACTCA 59.963 50.0 11.47 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.956694 CAAAGATTTAATGCGTCTCGAAAAC 58.043 36.000 0.00 0.00 0.00 2.43
25 26 6.481954 AAGATTTAATGCGTCTCGAAAACT 57.518 33.333 0.00 0.00 0.00 2.66
26 27 7.591006 AAGATTTAATGCGTCTCGAAAACTA 57.409 32.000 0.00 0.00 0.00 2.24
27 28 7.591006 AGATTTAATGCGTCTCGAAAACTAA 57.409 32.000 0.00 0.00 0.00 2.24
28 29 8.025243 AGATTTAATGCGTCTCGAAAACTAAA 57.975 30.769 0.00 0.00 0.00 1.85
29 30 8.500773 AGATTTAATGCGTCTCGAAAACTAAAA 58.499 29.630 0.00 0.00 0.00 1.52
30 31 9.109533 GATTTAATGCGTCTCGAAAACTAAAAA 57.890 29.630 0.00 0.00 0.00 1.94
31 32 9.620660 ATTTAATGCGTCTCGAAAACTAAAAAT 57.379 25.926 0.00 0.00 0.00 1.82
34 35 8.655378 AATGCGTCTCGAAAACTAAAAATAAG 57.345 30.769 0.00 0.00 0.00 1.73
35 36 7.410800 TGCGTCTCGAAAACTAAAAATAAGA 57.589 32.000 0.00 0.00 0.00 2.10
36 37 8.025243 TGCGTCTCGAAAACTAAAAATAAGAT 57.975 30.769 0.00 0.00 0.00 2.40
37 38 7.955324 TGCGTCTCGAAAACTAAAAATAAGATG 59.045 33.333 0.00 0.00 0.00 2.90
38 39 8.166706 GCGTCTCGAAAACTAAAAATAAGATGA 58.833 33.333 0.00 0.00 0.00 2.92
49 50 9.981460 ACTAAAAATAAGATGAAGATGAACCCT 57.019 29.630 0.00 0.00 0.00 4.34
58 59 8.071177 AGATGAAGATGAACCCTTTAAATTGG 57.929 34.615 3.07 3.07 0.00 3.16
59 60 7.895429 AGATGAAGATGAACCCTTTAAATTGGA 59.105 33.333 10.10 0.00 0.00 3.53
60 61 7.227049 TGAAGATGAACCCTTTAAATTGGAC 57.773 36.000 10.10 5.43 0.00 4.02
61 62 6.780031 TGAAGATGAACCCTTTAAATTGGACA 59.220 34.615 10.10 9.54 0.00 4.02
62 63 7.288852 TGAAGATGAACCCTTTAAATTGGACAA 59.711 33.333 10.10 0.00 0.00 3.18
63 64 7.610580 AGATGAACCCTTTAAATTGGACAAA 57.389 32.000 10.10 0.00 0.00 2.83
64 65 7.441836 AGATGAACCCTTTAAATTGGACAAAC 58.558 34.615 10.10 8.37 0.00 2.93
65 66 6.546428 TGAACCCTTTAAATTGGACAAACA 57.454 33.333 10.10 0.00 0.00 2.83
66 67 6.947464 TGAACCCTTTAAATTGGACAAACAA 58.053 32.000 10.10 0.00 34.41 2.83
67 68 7.394816 TGAACCCTTTAAATTGGACAAACAAA 58.605 30.769 10.10 0.00 33.48 2.83
68 69 7.883311 TGAACCCTTTAAATTGGACAAACAAAA 59.117 29.630 10.10 0.00 33.48 2.44
69 70 8.637196 AACCCTTTAAATTGGACAAACAAAAA 57.363 26.923 10.10 0.00 33.48 1.94
102 103 6.605471 AAGCTTTATAACCAAAAAGGAGGG 57.395 37.500 0.00 0.00 41.22 4.30
103 104 5.899278 AGCTTTATAACCAAAAAGGAGGGA 58.101 37.500 0.00 0.00 41.22 4.20
104 105 5.952347 AGCTTTATAACCAAAAAGGAGGGAG 59.048 40.000 0.00 0.00 41.22 4.30
105 106 5.394224 GCTTTATAACCAAAAAGGAGGGAGC 60.394 44.000 0.00 0.00 41.22 4.70
106 107 3.825908 ATAACCAAAAAGGAGGGAGCA 57.174 42.857 0.00 0.00 41.22 4.26
107 108 2.702270 AACCAAAAAGGAGGGAGCAT 57.298 45.000 0.00 0.00 41.22 3.79
108 109 1.928868 ACCAAAAAGGAGGGAGCATG 58.071 50.000 0.00 0.00 41.22 4.06
109 110 1.147817 ACCAAAAAGGAGGGAGCATGT 59.852 47.619 0.00 0.00 41.22 3.21
110 111 2.250924 CCAAAAAGGAGGGAGCATGTT 58.749 47.619 0.00 0.00 41.22 2.71
111 112 2.028748 CCAAAAAGGAGGGAGCATGTTG 60.029 50.000 0.00 0.00 41.22 3.33
112 113 1.260544 AAAAGGAGGGAGCATGTTGC 58.739 50.000 0.00 0.00 45.46 4.17
128 129 2.553268 GCTTCGTGCAGCAGTGTC 59.447 61.111 0.00 0.00 42.31 3.67
129 130 2.849007 CTTCGTGCAGCAGTGTCG 59.151 61.111 0.00 0.00 0.00 4.35
130 131 1.951130 CTTCGTGCAGCAGTGTCGT 60.951 57.895 0.00 0.00 0.00 4.34
131 132 1.880601 CTTCGTGCAGCAGTGTCGTC 61.881 60.000 0.00 0.00 0.00 4.20
132 133 2.621371 TTCGTGCAGCAGTGTCGTCA 62.621 55.000 0.00 0.00 0.00 4.35
133 134 2.023771 CGTGCAGCAGTGTCGTCAT 61.024 57.895 0.00 0.00 0.00 3.06
134 135 1.560004 CGTGCAGCAGTGTCGTCATT 61.560 55.000 0.00 0.00 0.00 2.57
135 136 1.428448 GTGCAGCAGTGTCGTCATTA 58.572 50.000 0.00 0.00 0.00 1.90
136 137 2.002586 GTGCAGCAGTGTCGTCATTAT 58.997 47.619 0.00 0.00 0.00 1.28
137 138 2.029728 GTGCAGCAGTGTCGTCATTATC 59.970 50.000 0.00 0.00 0.00 1.75
138 139 2.094026 TGCAGCAGTGTCGTCATTATCT 60.094 45.455 0.00 0.00 0.00 1.98
139 140 2.932614 GCAGCAGTGTCGTCATTATCTT 59.067 45.455 0.00 0.00 0.00 2.40
140 141 3.372206 GCAGCAGTGTCGTCATTATCTTT 59.628 43.478 0.00 0.00 0.00 2.52
141 142 4.142816 GCAGCAGTGTCGTCATTATCTTTT 60.143 41.667 0.00 0.00 0.00 2.27
142 143 5.319139 CAGCAGTGTCGTCATTATCTTTTG 58.681 41.667 0.00 0.00 0.00 2.44
143 144 5.120674 CAGCAGTGTCGTCATTATCTTTTGA 59.879 40.000 0.00 0.00 0.00 2.69
144 145 5.349817 AGCAGTGTCGTCATTATCTTTTGAG 59.650 40.000 0.00 0.00 0.00 3.02
145 146 5.120830 GCAGTGTCGTCATTATCTTTTGAGT 59.879 40.000 0.00 0.00 0.00 3.41
146 147 6.310467 GCAGTGTCGTCATTATCTTTTGAGTA 59.690 38.462 0.00 0.00 0.00 2.59
147 148 7.148639 GCAGTGTCGTCATTATCTTTTGAGTAA 60.149 37.037 0.00 0.00 0.00 2.24
148 149 8.708742 CAGTGTCGTCATTATCTTTTGAGTAAA 58.291 33.333 0.00 0.00 0.00 2.01
149 150 9.268268 AGTGTCGTCATTATCTTTTGAGTAAAA 57.732 29.630 0.00 0.00 34.75 1.52
185 186 8.165397 ACTATAATCTAGTACTCCCTCTGTTCC 58.835 40.741 0.00 0.00 0.00 3.62
186 187 5.475398 AATCTAGTACTCCCTCTGTTCCT 57.525 43.478 0.00 0.00 0.00 3.36
187 188 6.593759 AATCTAGTACTCCCTCTGTTCCTA 57.406 41.667 0.00 0.00 0.00 2.94
188 189 6.593759 ATCTAGTACTCCCTCTGTTCCTAA 57.406 41.667 0.00 0.00 0.00 2.69
189 190 6.398655 TCTAGTACTCCCTCTGTTCCTAAA 57.601 41.667 0.00 0.00 0.00 1.85
190 191 6.186234 TCTAGTACTCCCTCTGTTCCTAAAC 58.814 44.000 0.00 0.00 35.85 2.01
191 192 3.762823 AGTACTCCCTCTGTTCCTAAACG 59.237 47.826 0.00 0.00 38.28 3.60
192 193 1.275573 ACTCCCTCTGTTCCTAAACGC 59.724 52.381 0.00 0.00 38.28 4.84
193 194 0.245539 TCCCTCTGTTCCTAAACGCG 59.754 55.000 3.53 3.53 38.28 6.01
194 195 1.359459 CCCTCTGTTCCTAAACGCGC 61.359 60.000 5.73 0.00 38.28 6.86
195 196 0.669318 CCTCTGTTCCTAAACGCGCA 60.669 55.000 5.73 0.00 38.28 6.09
196 197 0.438830 CTCTGTTCCTAAACGCGCAC 59.561 55.000 5.73 0.00 38.28 5.34
197 198 0.249531 TCTGTTCCTAAACGCGCACA 60.250 50.000 5.73 0.00 38.28 4.57
198 199 0.110823 CTGTTCCTAAACGCGCACAC 60.111 55.000 5.73 0.00 38.28 3.82
199 200 0.810426 TGTTCCTAAACGCGCACACA 60.810 50.000 5.73 0.00 38.28 3.72
200 201 0.383860 GTTCCTAAACGCGCACACAC 60.384 55.000 5.73 0.00 0.00 3.82
201 202 0.810426 TTCCTAAACGCGCACACACA 60.810 50.000 5.73 0.00 0.00 3.72
202 203 1.083015 CCTAAACGCGCACACACAC 60.083 57.895 5.73 0.00 0.00 3.82
203 204 1.639000 CTAAACGCGCACACACACA 59.361 52.632 5.73 0.00 0.00 3.72
204 205 0.653323 CTAAACGCGCACACACACAC 60.653 55.000 5.73 0.00 0.00 3.82
205 206 2.037913 TAAACGCGCACACACACACC 62.038 55.000 5.73 0.00 0.00 4.16
207 208 3.648982 CGCGCACACACACACCAT 61.649 61.111 8.75 0.00 0.00 3.55
208 209 2.313909 CGCGCACACACACACCATA 61.314 57.895 8.75 0.00 0.00 2.74
209 210 1.634757 CGCGCACACACACACCATAT 61.635 55.000 8.75 0.00 0.00 1.78
210 211 0.096976 GCGCACACACACACCATATC 59.903 55.000 0.30 0.00 0.00 1.63
211 212 1.725641 CGCACACACACACCATATCT 58.274 50.000 0.00 0.00 0.00 1.98
212 213 2.076100 CGCACACACACACCATATCTT 58.924 47.619 0.00 0.00 0.00 2.40
213 214 2.483877 CGCACACACACACCATATCTTT 59.516 45.455 0.00 0.00 0.00 2.52
214 215 3.682377 CGCACACACACACCATATCTTTA 59.318 43.478 0.00 0.00 0.00 1.85
215 216 4.332543 CGCACACACACACCATATCTTTAT 59.667 41.667 0.00 0.00 0.00 1.40
216 217 5.572211 GCACACACACACCATATCTTTATG 58.428 41.667 0.00 0.00 35.87 1.90
217 218 5.353956 GCACACACACACCATATCTTTATGA 59.646 40.000 0.00 0.00 37.94 2.15
218 219 6.457392 GCACACACACACCATATCTTTATGAG 60.457 42.308 0.00 0.00 37.94 2.90
219 220 5.586243 ACACACACACCATATCTTTATGAGC 59.414 40.000 0.00 0.00 37.94 4.26
220 221 5.585844 CACACACACCATATCTTTATGAGCA 59.414 40.000 0.00 0.00 37.94 4.26
221 222 5.586243 ACACACACCATATCTTTATGAGCAC 59.414 40.000 0.00 0.00 37.94 4.40
222 223 5.008019 CACACACCATATCTTTATGAGCACC 59.992 44.000 0.00 0.00 37.94 5.01
223 224 5.104360 ACACACCATATCTTTATGAGCACCT 60.104 40.000 0.00 0.00 37.94 4.00
224 225 5.824624 CACACCATATCTTTATGAGCACCTT 59.175 40.000 0.00 0.00 37.94 3.50
225 226 6.319658 CACACCATATCTTTATGAGCACCTTT 59.680 38.462 0.00 0.00 37.94 3.11
226 227 6.319658 ACACCATATCTTTATGAGCACCTTTG 59.680 38.462 0.00 0.00 37.94 2.77
227 228 6.543465 CACCATATCTTTATGAGCACCTTTGA 59.457 38.462 0.00 0.00 37.94 2.69
228 229 7.067372 CACCATATCTTTATGAGCACCTTTGAA 59.933 37.037 0.00 0.00 37.94 2.69
229 230 7.615365 ACCATATCTTTATGAGCACCTTTGAAA 59.385 33.333 0.00 0.00 37.94 2.69
230 231 8.133627 CCATATCTTTATGAGCACCTTTGAAAG 58.866 37.037 0.00 0.00 37.94 2.62
231 232 8.896744 CATATCTTTATGAGCACCTTTGAAAGA 58.103 33.333 6.49 0.00 37.94 2.52
232 233 6.560253 TCTTTATGAGCACCTTTGAAAGAC 57.440 37.500 6.49 0.00 0.00 3.01
233 234 5.179368 TCTTTATGAGCACCTTTGAAAGACG 59.821 40.000 6.49 0.00 0.00 4.18
234 235 2.613026 TGAGCACCTTTGAAAGACGA 57.387 45.000 6.49 0.00 0.00 4.20
235 236 2.210116 TGAGCACCTTTGAAAGACGAC 58.790 47.619 6.49 0.00 0.00 4.34
236 237 1.192534 GAGCACCTTTGAAAGACGACG 59.807 52.381 6.49 0.00 0.00 5.12
237 238 1.202486 AGCACCTTTGAAAGACGACGA 60.202 47.619 6.49 0.00 0.00 4.20
238 239 1.192534 GCACCTTTGAAAGACGACGAG 59.807 52.381 6.49 0.00 0.00 4.18
239 240 2.739292 CACCTTTGAAAGACGACGAGA 58.261 47.619 6.49 0.00 0.00 4.04
240 241 3.120792 CACCTTTGAAAGACGACGAGAA 58.879 45.455 6.49 0.00 0.00 2.87
241 242 3.060473 CACCTTTGAAAGACGACGAGAAC 60.060 47.826 6.49 0.00 0.00 3.01
242 243 2.153247 CCTTTGAAAGACGACGAGAACG 59.847 50.000 6.49 0.00 45.75 3.95
252 253 3.998156 CGAGAACGTCTCCTCCCA 58.002 61.111 8.73 0.00 40.34 4.37
253 254 1.507174 CGAGAACGTCTCCTCCCAC 59.493 63.158 8.73 0.00 40.34 4.61
254 255 0.961358 CGAGAACGTCTCCTCCCACT 60.961 60.000 8.73 0.00 40.34 4.00
255 256 0.528470 GAGAACGTCTCCTCCCACTG 59.472 60.000 0.00 0.00 37.55 3.66
256 257 0.112606 AGAACGTCTCCTCCCACTGA 59.887 55.000 0.00 0.00 0.00 3.41
257 258 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
258 259 1.550976 GAACGTCTCCTCCCACTGAAT 59.449 52.381 0.00 0.00 0.00 2.57
259 260 0.898320 ACGTCTCCTCCCACTGAATG 59.102 55.000 0.00 0.00 0.00 2.67
260 261 0.460987 CGTCTCCTCCCACTGAATGC 60.461 60.000 0.00 0.00 0.00 3.56
261 262 0.460987 GTCTCCTCCCACTGAATGCG 60.461 60.000 0.00 0.00 0.00 4.73
262 263 1.817099 CTCCTCCCACTGAATGCGC 60.817 63.158 0.00 0.00 0.00 6.09
263 264 2.046023 CCTCCCACTGAATGCGCA 60.046 61.111 14.96 14.96 0.00 6.09
264 265 1.452651 CCTCCCACTGAATGCGCAT 60.453 57.895 19.28 19.28 0.00 4.73
265 266 1.442526 CCTCCCACTGAATGCGCATC 61.443 60.000 25.53 17.12 0.00 3.91
266 267 1.769098 CTCCCACTGAATGCGCATCG 61.769 60.000 25.53 17.09 0.00 3.84
277 278 4.131376 CGCATCGCTGGAAATCCT 57.869 55.556 0.44 0.00 36.82 3.24
278 279 1.645455 CGCATCGCTGGAAATCCTG 59.355 57.895 0.44 1.39 37.93 3.86
279 280 0.811219 CGCATCGCTGGAAATCCTGA 60.811 55.000 10.20 1.98 37.15 3.86
280 281 1.382522 GCATCGCTGGAAATCCTGAA 58.617 50.000 10.20 0.00 37.15 3.02
281 282 1.745087 GCATCGCTGGAAATCCTGAAA 59.255 47.619 10.20 0.00 37.15 2.69
282 283 2.360165 GCATCGCTGGAAATCCTGAAAT 59.640 45.455 10.20 0.52 37.15 2.17
283 284 3.565482 GCATCGCTGGAAATCCTGAAATA 59.435 43.478 10.20 0.00 37.15 1.40
284 285 4.036734 GCATCGCTGGAAATCCTGAAATAA 59.963 41.667 10.20 0.00 37.15 1.40
285 286 5.450412 GCATCGCTGGAAATCCTGAAATAAA 60.450 40.000 10.20 0.00 37.15 1.40
286 287 6.736794 GCATCGCTGGAAATCCTGAAATAAAT 60.737 38.462 10.20 0.00 37.15 1.40
287 288 6.773976 TCGCTGGAAATCCTGAAATAAATT 57.226 33.333 10.20 0.00 37.15 1.82
288 289 6.795399 TCGCTGGAAATCCTGAAATAAATTC 58.205 36.000 10.20 0.00 37.15 2.17
289 290 6.376864 TCGCTGGAAATCCTGAAATAAATTCA 59.623 34.615 10.20 0.00 45.71 2.57
290 291 6.473455 CGCTGGAAATCCTGAAATAAATTCAC 59.527 38.462 10.20 0.00 43.08 3.18
291 292 6.473455 GCTGGAAATCCTGAAATAAATTCACG 59.527 38.462 10.20 0.00 43.08 4.35
292 293 7.628366 GCTGGAAATCCTGAAATAAATTCACGA 60.628 37.037 10.20 0.00 43.08 4.35
293 294 8.116651 TGGAAATCCTGAAATAAATTCACGAA 57.883 30.769 0.44 0.00 43.08 3.85
294 295 8.748412 TGGAAATCCTGAAATAAATTCACGAAT 58.252 29.630 0.44 0.00 43.08 3.34
300 301 9.515020 TCCTGAAATAAATTCACGAATAAATGC 57.485 29.630 0.00 0.00 43.08 3.56
301 302 8.471457 CCTGAAATAAATTCACGAATAAATGCG 58.529 33.333 0.00 0.00 43.08 4.73
302 303 8.903570 TGAAATAAATTCACGAATAAATGCGT 57.096 26.923 0.00 0.00 43.08 5.24
307 308 3.988459 ACGAATAAATGCGTGCACC 57.012 47.368 12.15 4.74 39.56 5.01
308 309 1.160989 ACGAATAAATGCGTGCACCA 58.839 45.000 12.15 10.86 39.56 4.17
309 310 1.130373 ACGAATAAATGCGTGCACCAG 59.870 47.619 12.15 0.00 39.56 4.00
310 311 1.531677 CGAATAAATGCGTGCACCAGG 60.532 52.381 12.15 0.00 0.00 4.45
311 312 1.742831 GAATAAATGCGTGCACCAGGA 59.257 47.619 12.15 0.00 0.00 3.86
312 313 2.057137 ATAAATGCGTGCACCAGGAT 57.943 45.000 12.15 1.68 0.00 3.24
313 314 1.832883 TAAATGCGTGCACCAGGATT 58.167 45.000 12.15 8.44 0.00 3.01
314 315 0.968405 AAATGCGTGCACCAGGATTT 59.032 45.000 12.15 14.02 0.00 2.17
315 316 1.832883 AATGCGTGCACCAGGATTTA 58.167 45.000 12.15 0.00 0.00 1.40
316 317 1.832883 ATGCGTGCACCAGGATTTAA 58.167 45.000 12.15 0.00 0.00 1.52
317 318 1.610363 TGCGTGCACCAGGATTTAAA 58.390 45.000 12.15 0.00 0.00 1.52
318 319 1.268352 TGCGTGCACCAGGATTTAAAC 59.732 47.619 12.15 0.00 0.00 2.01
319 320 1.402325 GCGTGCACCAGGATTTAAACC 60.402 52.381 12.15 0.00 0.00 3.27
320 321 1.201414 CGTGCACCAGGATTTAAACCC 59.799 52.381 12.15 0.00 0.00 4.11
321 322 2.525368 GTGCACCAGGATTTAAACCCT 58.475 47.619 5.22 0.00 0.00 4.34
336 337 4.399764 CCTGGTGGGCTGGAGATA 57.600 61.111 0.00 0.00 0.00 1.98
337 338 1.832912 CCTGGTGGGCTGGAGATAC 59.167 63.158 0.00 0.00 0.00 2.24
338 339 1.700042 CCTGGTGGGCTGGAGATACC 61.700 65.000 0.00 0.00 39.54 2.73
341 342 4.908333 TGGGCTGGAGATACCACA 57.092 55.556 0.00 0.00 44.64 4.17
342 343 2.607811 TGGGCTGGAGATACCACAG 58.392 57.895 0.00 0.00 44.64 3.66
343 344 0.252696 TGGGCTGGAGATACCACAGT 60.253 55.000 0.00 0.00 44.64 3.55
344 345 0.466124 GGGCTGGAGATACCACAGTC 59.534 60.000 0.00 0.00 44.64 3.51
345 346 0.466124 GGCTGGAGATACCACAGTCC 59.534 60.000 0.00 0.00 44.64 3.85
346 347 0.466124 GCTGGAGATACCACAGTCCC 59.534 60.000 0.00 0.00 44.64 4.46
347 348 1.967274 GCTGGAGATACCACAGTCCCT 60.967 57.143 0.00 0.00 44.64 4.20
348 349 2.035632 CTGGAGATACCACAGTCCCTC 58.964 57.143 0.00 0.00 44.64 4.30
349 350 1.646447 TGGAGATACCACAGTCCCTCT 59.354 52.381 0.00 0.00 44.64 3.69
350 351 2.856864 TGGAGATACCACAGTCCCTCTA 59.143 50.000 0.00 0.00 44.64 2.43
351 352 3.271225 TGGAGATACCACAGTCCCTCTAA 59.729 47.826 0.00 0.00 44.64 2.10
352 353 3.637694 GGAGATACCACAGTCCCTCTAAC 59.362 52.174 0.00 0.00 38.79 2.34
353 354 3.637694 GAGATACCACAGTCCCTCTAACC 59.362 52.174 0.00 0.00 0.00 2.85
354 355 3.012502 AGATACCACAGTCCCTCTAACCA 59.987 47.826 0.00 0.00 0.00 3.67
355 356 2.344093 ACCACAGTCCCTCTAACCAT 57.656 50.000 0.00 0.00 0.00 3.55
356 357 2.632537 ACCACAGTCCCTCTAACCATT 58.367 47.619 0.00 0.00 0.00 3.16
357 358 2.572104 ACCACAGTCCCTCTAACCATTC 59.428 50.000 0.00 0.00 0.00 2.67
358 359 2.571653 CCACAGTCCCTCTAACCATTCA 59.428 50.000 0.00 0.00 0.00 2.57
359 360 3.009033 CCACAGTCCCTCTAACCATTCAA 59.991 47.826 0.00 0.00 0.00 2.69
360 361 4.003648 CACAGTCCCTCTAACCATTCAAC 58.996 47.826 0.00 0.00 0.00 3.18
361 362 3.009143 ACAGTCCCTCTAACCATTCAACC 59.991 47.826 0.00 0.00 0.00 3.77
362 363 3.009033 CAGTCCCTCTAACCATTCAACCA 59.991 47.826 0.00 0.00 0.00 3.67
363 364 3.009143 AGTCCCTCTAACCATTCAACCAC 59.991 47.826 0.00 0.00 0.00 4.16
364 365 2.983192 TCCCTCTAACCATTCAACCACA 59.017 45.455 0.00 0.00 0.00 4.17
365 366 3.009033 TCCCTCTAACCATTCAACCACAG 59.991 47.826 0.00 0.00 0.00 3.66
366 367 3.009033 CCCTCTAACCATTCAACCACAGA 59.991 47.826 0.00 0.00 0.00 3.41
367 368 4.324563 CCCTCTAACCATTCAACCACAGAT 60.325 45.833 0.00 0.00 0.00 2.90
368 369 5.256474 CCTCTAACCATTCAACCACAGATT 58.744 41.667 0.00 0.00 0.00 2.40
369 370 5.124457 CCTCTAACCATTCAACCACAGATTG 59.876 44.000 0.00 0.00 0.00 2.67
382 383 5.718649 CCACAGATTGGTTCGTTATGTAG 57.281 43.478 0.00 0.00 41.10 2.74
383 384 5.416083 CCACAGATTGGTTCGTTATGTAGA 58.584 41.667 0.00 0.00 41.10 2.59
384 385 5.291128 CCACAGATTGGTTCGTTATGTAGAC 59.709 44.000 0.00 0.00 41.10 2.59
385 386 5.867174 CACAGATTGGTTCGTTATGTAGACA 59.133 40.000 0.00 0.00 0.00 3.41
386 387 6.535150 CACAGATTGGTTCGTTATGTAGACAT 59.465 38.462 0.08 0.08 40.22 3.06
387 388 7.704899 CACAGATTGGTTCGTTATGTAGACATA 59.295 37.037 0.00 0.00 37.76 2.29
388 389 8.421784 ACAGATTGGTTCGTTATGTAGACATAT 58.578 33.333 3.28 0.00 38.49 1.78
389 390 9.261180 CAGATTGGTTCGTTATGTAGACATATT 57.739 33.333 3.28 0.00 38.49 1.28
390 391 9.832445 AGATTGGTTCGTTATGTAGACATATTT 57.168 29.630 3.28 0.00 38.49 1.40
418 419 7.121974 AGTGTAGATTCACTCATTTTGTTCG 57.878 36.000 0.00 0.00 44.07 3.95
419 420 6.147821 AGTGTAGATTCACTCATTTTGTTCGG 59.852 38.462 0.00 0.00 44.07 4.30
420 421 5.995282 TGTAGATTCACTCATTTTGTTCGGT 59.005 36.000 0.00 0.00 0.00 4.69
421 422 7.117236 GTGTAGATTCACTCATTTTGTTCGGTA 59.883 37.037 0.00 0.00 35.68 4.02
422 423 6.481954 AGATTCACTCATTTTGTTCGGTAC 57.518 37.500 0.00 0.00 0.00 3.34
440 441 2.633639 CGTGGTCGTATGTCGTCAC 58.366 57.895 0.00 0.00 40.80 3.67
441 442 0.167470 CGTGGTCGTATGTCGTCACT 59.833 55.000 0.00 0.00 39.92 3.41
442 443 1.400629 CGTGGTCGTATGTCGTCACTT 60.401 52.381 0.00 0.00 39.92 3.16
443 444 1.983605 GTGGTCGTATGTCGTCACTTG 59.016 52.381 0.00 0.00 39.46 3.16
444 445 1.610038 TGGTCGTATGTCGTCACTTGT 59.390 47.619 0.00 0.00 40.80 3.16
445 446 2.034939 TGGTCGTATGTCGTCACTTGTT 59.965 45.455 0.00 0.00 40.80 2.83
446 447 2.407361 GGTCGTATGTCGTCACTTGTTG 59.593 50.000 0.00 0.00 40.80 3.33
447 448 3.302555 GTCGTATGTCGTCACTTGTTGA 58.697 45.455 0.00 0.00 40.80 3.18
448 449 3.732219 GTCGTATGTCGTCACTTGTTGAA 59.268 43.478 0.00 0.00 40.80 2.69
449 450 4.207635 GTCGTATGTCGTCACTTGTTGAAA 59.792 41.667 0.00 0.00 40.80 2.69
450 451 4.986034 TCGTATGTCGTCACTTGTTGAAAT 59.014 37.500 0.00 0.00 40.80 2.17
451 452 5.464057 TCGTATGTCGTCACTTGTTGAAATT 59.536 36.000 0.00 0.00 40.80 1.82
452 453 6.018588 TCGTATGTCGTCACTTGTTGAAATTT 60.019 34.615 0.00 0.00 40.80 1.82
453 454 6.299966 CGTATGTCGTCACTTGTTGAAATTTC 59.700 38.462 11.41 11.41 35.39 2.17
454 455 5.811399 TGTCGTCACTTGTTGAAATTTCT 57.189 34.783 18.64 0.00 35.39 2.52
455 456 6.912203 TGTCGTCACTTGTTGAAATTTCTA 57.088 33.333 18.64 8.95 35.39 2.10
456 457 7.310072 TGTCGTCACTTGTTGAAATTTCTAA 57.690 32.000 18.64 8.91 35.39 2.10
457 458 7.753659 TGTCGTCACTTGTTGAAATTTCTAAA 58.246 30.769 18.64 4.07 35.39 1.85
458 459 8.237949 TGTCGTCACTTGTTGAAATTTCTAAAA 58.762 29.630 18.64 11.65 35.39 1.52
459 460 9.068008 GTCGTCACTTGTTGAAATTTCTAAAAA 57.932 29.630 18.64 11.26 35.39 1.94
460 461 9.284594 TCGTCACTTGTTGAAATTTCTAAAAAG 57.715 29.630 18.64 19.69 35.39 2.27
461 462 9.284594 CGTCACTTGTTGAAATTTCTAAAAAGA 57.715 29.630 24.65 15.57 35.39 2.52
481 482 9.908152 AAAAAGACAAATATTTAGGAAACCGAG 57.092 29.630 0.00 0.00 0.00 4.63
482 483 6.679327 AGACAAATATTTAGGAAACCGAGC 57.321 37.500 0.00 0.00 0.00 5.03
483 484 5.293569 AGACAAATATTTAGGAAACCGAGCG 59.706 40.000 0.00 0.00 0.00 5.03
484 485 5.180271 ACAAATATTTAGGAAACCGAGCGA 58.820 37.500 0.00 0.00 0.00 4.93
485 486 5.293569 ACAAATATTTAGGAAACCGAGCGAG 59.706 40.000 0.00 0.00 0.00 5.03
490 491 5.581126 TTTAGGAAACCGAGCGAGTATTA 57.419 39.130 0.00 0.00 0.00 0.98
534 535 1.384222 GGGGGCATGACGGTCATTTC 61.384 60.000 20.52 14.57 34.28 2.17
542 543 2.666207 CGGTCATTTCCCCGGACA 59.334 61.111 0.73 0.00 40.54 4.02
549 550 1.683917 CATTTCCCCGGACACAAAACA 59.316 47.619 0.73 0.00 0.00 2.83
678 679 3.513438 GTGCACACACCCGTTGCA 61.513 61.111 13.17 0.00 41.21 4.08
880 881 1.626069 GGGCCCAGGGTACTAACCTAA 60.626 57.143 19.95 0.00 45.95 2.69
884 885 2.105766 CCAGGGTACTAACCTAAGCGT 58.894 52.381 0.00 0.00 45.95 5.07
1028 1029 4.595350 TCCAAATCCGAAAATTTTCCCCTT 59.405 37.500 22.15 11.53 33.68 3.95
1266 1270 0.618968 AGATCCTTCTCCTTGCCGGT 60.619 55.000 1.90 0.00 0.00 5.28
1391 1395 0.041386 AGGAGAAGTACGAGGGCCTT 59.959 55.000 7.89 0.00 0.00 4.35
1487 1491 1.276622 ACAACTACCTCAAGGCCGAT 58.723 50.000 0.00 0.00 39.32 4.18
2496 2589 4.096833 TGCTTAGCATTGTAGCAATTGGAG 59.903 41.667 1.39 0.00 41.57 3.86
2614 2710 2.679450 TCCACCATGTTTCGTACTTCG 58.321 47.619 0.00 0.00 41.41 3.79
2617 2713 3.611113 CCACCATGTTTCGTACTTCGTAG 59.389 47.826 0.00 0.00 40.80 3.51
2674 2770 6.432783 TGGTTACAAGTTTGCATATAGCTGTT 59.567 34.615 0.00 0.00 45.94 3.16
2798 2894 3.341823 CTGATTGCTTGCCTAGTGTTCT 58.658 45.455 0.00 0.00 0.00 3.01
2799 2895 3.754965 TGATTGCTTGCCTAGTGTTCTT 58.245 40.909 0.00 0.00 0.00 2.52
2802 2898 3.762407 TGCTTGCCTAGTGTTCTTGTA 57.238 42.857 0.00 0.00 0.00 2.41
2807 2903 3.990092 TGCCTAGTGTTCTTGTACTGTG 58.010 45.455 0.00 0.00 0.00 3.66
2808 2904 3.244078 TGCCTAGTGTTCTTGTACTGTGG 60.244 47.826 0.00 0.00 0.00 4.17
2809 2905 3.006537 GCCTAGTGTTCTTGTACTGTGGA 59.993 47.826 0.00 0.00 0.00 4.02
2810 2906 4.322801 GCCTAGTGTTCTTGTACTGTGGAT 60.323 45.833 0.00 0.00 0.00 3.41
2811 2907 5.171476 CCTAGTGTTCTTGTACTGTGGATG 58.829 45.833 0.00 0.00 0.00 3.51
2812 2908 4.955811 AGTGTTCTTGTACTGTGGATGA 57.044 40.909 0.00 0.00 0.00 2.92
2813 2909 4.887748 AGTGTTCTTGTACTGTGGATGAG 58.112 43.478 0.00 0.00 0.00 2.90
2814 2910 4.345257 AGTGTTCTTGTACTGTGGATGAGT 59.655 41.667 0.00 0.00 0.00 3.41
2815 2911 5.057149 GTGTTCTTGTACTGTGGATGAGTT 58.943 41.667 0.00 0.00 0.00 3.01
2816 2912 5.527582 GTGTTCTTGTACTGTGGATGAGTTT 59.472 40.000 0.00 0.00 0.00 2.66
2827 2932 0.659957 GATGAGTTTGGGATGCGCTC 59.340 55.000 9.73 3.37 0.00 5.03
2835 2940 2.592308 GGATGCGCTCTTCCCCTT 59.408 61.111 9.73 0.00 32.07 3.95
3000 3514 4.155826 TGTTGTTGATGGCGAGGAAAATAG 59.844 41.667 0.00 0.00 0.00 1.73
3010 3524 8.697507 ATGGCGAGGAAAATAGAAGATTTTAT 57.302 30.769 0.00 0.00 32.03 1.40
3076 3590 6.041865 CCTGGTTATTGAATCCAATGGCATTA 59.958 38.462 13.23 0.00 42.55 1.90
3104 3618 3.072038 TGCCCTCACAATCATCATCCTAG 59.928 47.826 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.797033 AGTTTTCGAGACGCATTAAATCTTTG 59.203 34.615 0.00 0.00 0.00 2.77
1 2 6.899114 AGTTTTCGAGACGCATTAAATCTTT 58.101 32.000 0.00 0.00 0.00 2.52
2 3 6.481954 AGTTTTCGAGACGCATTAAATCTT 57.518 33.333 0.00 0.00 0.00 2.40
3 4 7.591006 TTAGTTTTCGAGACGCATTAAATCT 57.409 32.000 0.00 0.00 0.00 2.40
4 5 8.649810 TTTTAGTTTTCGAGACGCATTAAATC 57.350 30.769 0.00 0.00 0.00 2.17
5 6 9.620660 ATTTTTAGTTTTCGAGACGCATTAAAT 57.379 25.926 0.00 0.00 0.00 1.40
8 9 9.749490 CTTATTTTTAGTTTTCGAGACGCATTA 57.251 29.630 0.00 0.00 0.00 1.90
9 10 8.500773 TCTTATTTTTAGTTTTCGAGACGCATT 58.499 29.630 0.00 0.00 0.00 3.56
10 11 8.025243 TCTTATTTTTAGTTTTCGAGACGCAT 57.975 30.769 0.00 0.00 0.00 4.73
11 12 7.410800 TCTTATTTTTAGTTTTCGAGACGCA 57.589 32.000 0.00 0.00 0.00 5.24
12 13 8.166706 TCATCTTATTTTTAGTTTTCGAGACGC 58.833 33.333 0.00 0.00 0.00 5.19
23 24 9.981460 AGGGTTCATCTTCATCTTATTTTTAGT 57.019 29.630 0.00 0.00 0.00 2.24
32 33 8.534496 CCAATTTAAAGGGTTCATCTTCATCTT 58.466 33.333 0.00 0.00 0.00 2.40
33 34 7.895429 TCCAATTTAAAGGGTTCATCTTCATCT 59.105 33.333 8.17 0.00 0.00 2.90
34 35 7.976175 GTCCAATTTAAAGGGTTCATCTTCATC 59.024 37.037 8.17 0.00 0.00 2.92
35 36 7.454380 TGTCCAATTTAAAGGGTTCATCTTCAT 59.546 33.333 8.17 0.00 0.00 2.57
36 37 6.780031 TGTCCAATTTAAAGGGTTCATCTTCA 59.220 34.615 8.17 0.00 0.00 3.02
37 38 7.227049 TGTCCAATTTAAAGGGTTCATCTTC 57.773 36.000 8.17 0.00 0.00 2.87
38 39 7.610580 TTGTCCAATTTAAAGGGTTCATCTT 57.389 32.000 8.17 0.00 0.00 2.40
39 40 7.070571 TGTTTGTCCAATTTAAAGGGTTCATCT 59.929 33.333 8.17 0.00 0.00 2.90
40 41 7.213678 TGTTTGTCCAATTTAAAGGGTTCATC 58.786 34.615 8.17 6.83 0.00 2.92
41 42 7.130681 TGTTTGTCCAATTTAAAGGGTTCAT 57.869 32.000 8.17 0.00 0.00 2.57
42 43 6.546428 TGTTTGTCCAATTTAAAGGGTTCA 57.454 33.333 8.17 6.81 0.00 3.18
43 44 7.851387 TTTGTTTGTCCAATTTAAAGGGTTC 57.149 32.000 8.17 4.91 0.00 3.62
44 45 8.637196 TTTTTGTTTGTCCAATTTAAAGGGTT 57.363 26.923 8.17 0.00 0.00 4.11
76 77 8.758829 CCCTCCTTTTTGGTTATAAAGCTTATT 58.241 33.333 0.00 0.00 37.07 1.40
77 78 8.119891 TCCCTCCTTTTTGGTTATAAAGCTTAT 58.880 33.333 0.00 0.00 37.07 1.73
78 79 7.471890 TCCCTCCTTTTTGGTTATAAAGCTTA 58.528 34.615 0.00 0.00 37.07 3.09
79 80 6.319715 TCCCTCCTTTTTGGTTATAAAGCTT 58.680 36.000 0.00 0.00 37.07 3.74
80 81 5.899278 TCCCTCCTTTTTGGTTATAAAGCT 58.101 37.500 0.00 0.00 37.07 3.74
81 82 5.394224 GCTCCCTCCTTTTTGGTTATAAAGC 60.394 44.000 0.00 0.00 37.07 3.51
82 83 5.714806 TGCTCCCTCCTTTTTGGTTATAAAG 59.285 40.000 0.00 0.00 37.07 1.85
83 84 5.646215 TGCTCCCTCCTTTTTGGTTATAAA 58.354 37.500 0.00 0.00 37.07 1.40
84 85 5.263872 TGCTCCCTCCTTTTTGGTTATAA 57.736 39.130 0.00 0.00 37.07 0.98
85 86 4.938575 TGCTCCCTCCTTTTTGGTTATA 57.061 40.909 0.00 0.00 37.07 0.98
86 87 3.825908 TGCTCCCTCCTTTTTGGTTAT 57.174 42.857 0.00 0.00 37.07 1.89
87 88 3.181423 ACATGCTCCCTCCTTTTTGGTTA 60.181 43.478 0.00 0.00 37.07 2.85
88 89 2.250924 CATGCTCCCTCCTTTTTGGTT 58.749 47.619 0.00 0.00 37.07 3.67
89 90 1.147817 ACATGCTCCCTCCTTTTTGGT 59.852 47.619 0.00 0.00 37.07 3.67
90 91 1.928868 ACATGCTCCCTCCTTTTTGG 58.071 50.000 0.00 0.00 37.10 3.28
91 92 2.611224 GCAACATGCTCCCTCCTTTTTG 60.611 50.000 0.00 0.00 40.96 2.44
92 93 1.620323 GCAACATGCTCCCTCCTTTTT 59.380 47.619 0.00 0.00 40.96 1.94
93 94 1.260544 GCAACATGCTCCCTCCTTTT 58.739 50.000 0.00 0.00 40.96 2.27
94 95 2.967270 GCAACATGCTCCCTCCTTT 58.033 52.632 0.00 0.00 40.96 3.11
95 96 4.751431 GCAACATGCTCCCTCCTT 57.249 55.556 0.00 0.00 40.96 3.36
111 112 2.553268 GACACTGCTGCACGAAGC 59.447 61.111 0.00 0.00 43.82 3.86
112 113 1.880601 GACGACACTGCTGCACGAAG 61.881 60.000 15.79 1.42 0.00 3.79
113 114 1.949133 GACGACACTGCTGCACGAA 60.949 57.895 15.79 0.00 0.00 3.85
114 115 2.354656 GACGACACTGCTGCACGA 60.355 61.111 15.79 0.00 0.00 4.35
115 116 1.560004 AATGACGACACTGCTGCACG 61.560 55.000 0.00 3.20 0.00 5.34
116 117 1.428448 TAATGACGACACTGCTGCAC 58.572 50.000 0.00 0.00 0.00 4.57
117 118 2.094026 AGATAATGACGACACTGCTGCA 60.094 45.455 0.88 0.88 0.00 4.41
118 119 2.544685 AGATAATGACGACACTGCTGC 58.455 47.619 0.00 0.00 0.00 5.25
119 120 5.120674 TCAAAAGATAATGACGACACTGCTG 59.879 40.000 0.00 0.00 0.00 4.41
120 121 5.237815 TCAAAAGATAATGACGACACTGCT 58.762 37.500 0.00 0.00 0.00 4.24
121 122 5.120830 ACTCAAAAGATAATGACGACACTGC 59.879 40.000 0.00 0.00 0.00 4.40
122 123 6.712241 ACTCAAAAGATAATGACGACACTG 57.288 37.500 0.00 0.00 0.00 3.66
123 124 8.827177 TTTACTCAAAAGATAATGACGACACT 57.173 30.769 0.00 0.00 0.00 3.55
159 160 8.165397 GGAACAGAGGGAGTACTAGATTATAGT 58.835 40.741 0.00 0.00 0.00 2.12
160 161 8.387813 AGGAACAGAGGGAGTACTAGATTATAG 58.612 40.741 0.00 0.00 0.00 1.31
161 162 8.290463 AGGAACAGAGGGAGTACTAGATTATA 57.710 38.462 0.00 0.00 0.00 0.98
162 163 7.169287 AGGAACAGAGGGAGTACTAGATTAT 57.831 40.000 0.00 0.00 0.00 1.28
163 164 6.593759 AGGAACAGAGGGAGTACTAGATTA 57.406 41.667 0.00 0.00 0.00 1.75
164 165 5.475398 AGGAACAGAGGGAGTACTAGATT 57.525 43.478 0.00 0.00 0.00 2.40
165 166 6.593759 TTAGGAACAGAGGGAGTACTAGAT 57.406 41.667 0.00 0.00 0.00 1.98
166 167 6.186234 GTTTAGGAACAGAGGGAGTACTAGA 58.814 44.000 0.00 0.00 35.79 2.43
167 168 5.066246 CGTTTAGGAACAGAGGGAGTACTAG 59.934 48.000 0.00 0.00 35.44 2.57
168 169 4.946157 CGTTTAGGAACAGAGGGAGTACTA 59.054 45.833 0.00 0.00 35.44 1.82
169 170 3.762823 CGTTTAGGAACAGAGGGAGTACT 59.237 47.826 0.00 0.00 35.44 2.73
170 171 3.675502 GCGTTTAGGAACAGAGGGAGTAC 60.676 52.174 0.00 0.00 35.44 2.73
171 172 2.494870 GCGTTTAGGAACAGAGGGAGTA 59.505 50.000 0.00 0.00 35.44 2.59
172 173 1.275573 GCGTTTAGGAACAGAGGGAGT 59.724 52.381 0.00 0.00 35.44 3.85
173 174 1.736032 CGCGTTTAGGAACAGAGGGAG 60.736 57.143 0.00 0.00 35.44 4.30
174 175 0.245539 CGCGTTTAGGAACAGAGGGA 59.754 55.000 0.00 0.00 35.44 4.20
175 176 1.359459 GCGCGTTTAGGAACAGAGGG 61.359 60.000 8.43 0.00 35.44 4.30
176 177 0.669318 TGCGCGTTTAGGAACAGAGG 60.669 55.000 8.43 0.00 35.44 3.69
177 178 0.438830 GTGCGCGTTTAGGAACAGAG 59.561 55.000 8.43 0.00 35.44 3.35
178 179 0.249531 TGTGCGCGTTTAGGAACAGA 60.250 50.000 8.43 0.00 35.44 3.41
179 180 0.110823 GTGTGCGCGTTTAGGAACAG 60.111 55.000 8.43 0.00 35.44 3.16
180 181 0.810426 TGTGTGCGCGTTTAGGAACA 60.810 50.000 8.43 0.00 35.44 3.18
181 182 0.383860 GTGTGTGCGCGTTTAGGAAC 60.384 55.000 8.43 0.00 0.00 3.62
182 183 0.810426 TGTGTGTGCGCGTTTAGGAA 60.810 50.000 8.43 0.00 0.00 3.36
183 184 1.227292 TGTGTGTGCGCGTTTAGGA 60.227 52.632 8.43 0.00 0.00 2.94
184 185 1.083015 GTGTGTGTGCGCGTTTAGG 60.083 57.895 8.43 0.00 0.00 2.69
185 186 0.653323 GTGTGTGTGTGCGCGTTTAG 60.653 55.000 8.43 0.00 0.00 1.85
186 187 1.348938 GTGTGTGTGTGCGCGTTTA 59.651 52.632 8.43 0.00 0.00 2.01
187 188 2.099446 GTGTGTGTGTGCGCGTTT 59.901 55.556 8.43 0.00 0.00 3.60
188 189 3.871574 GGTGTGTGTGTGCGCGTT 61.872 61.111 8.43 0.00 0.00 4.84
189 190 2.980213 TATGGTGTGTGTGTGCGCGT 62.980 55.000 8.43 0.00 0.00 6.01
190 191 1.634757 ATATGGTGTGTGTGTGCGCG 61.635 55.000 0.00 0.00 0.00 6.86
191 192 0.096976 GATATGGTGTGTGTGTGCGC 59.903 55.000 0.00 0.00 0.00 6.09
192 193 1.725641 AGATATGGTGTGTGTGTGCG 58.274 50.000 0.00 0.00 0.00 5.34
193 194 5.353956 TCATAAAGATATGGTGTGTGTGTGC 59.646 40.000 0.00 0.00 39.54 4.57
194 195 6.457392 GCTCATAAAGATATGGTGTGTGTGTG 60.457 42.308 0.00 0.00 39.54 3.82
195 196 5.586243 GCTCATAAAGATATGGTGTGTGTGT 59.414 40.000 0.00 0.00 39.54 3.72
196 197 5.585844 TGCTCATAAAGATATGGTGTGTGTG 59.414 40.000 0.00 0.00 39.54 3.82
197 198 5.586243 GTGCTCATAAAGATATGGTGTGTGT 59.414 40.000 0.00 0.00 39.54 3.72
198 199 5.008019 GGTGCTCATAAAGATATGGTGTGTG 59.992 44.000 0.00 0.00 39.54 3.82
199 200 5.104360 AGGTGCTCATAAAGATATGGTGTGT 60.104 40.000 0.00 0.00 39.54 3.72
200 201 5.371526 AGGTGCTCATAAAGATATGGTGTG 58.628 41.667 0.00 0.00 39.54 3.82
201 202 5.636903 AGGTGCTCATAAAGATATGGTGT 57.363 39.130 0.00 0.00 39.54 4.16
202 203 6.543465 TCAAAGGTGCTCATAAAGATATGGTG 59.457 38.462 0.00 0.00 39.54 4.17
203 204 6.662755 TCAAAGGTGCTCATAAAGATATGGT 58.337 36.000 0.00 0.00 39.54 3.55
204 205 7.572523 TTCAAAGGTGCTCATAAAGATATGG 57.427 36.000 0.00 0.00 39.54 2.74
205 206 8.896744 TCTTTCAAAGGTGCTCATAAAGATATG 58.103 33.333 0.00 0.00 40.29 1.78
206 207 8.897752 GTCTTTCAAAGGTGCTCATAAAGATAT 58.102 33.333 0.00 0.00 34.91 1.63
207 208 7.064609 CGTCTTTCAAAGGTGCTCATAAAGATA 59.935 37.037 0.00 0.00 34.91 1.98
208 209 6.128172 CGTCTTTCAAAGGTGCTCATAAAGAT 60.128 38.462 0.00 0.00 34.91 2.40
209 210 5.179368 CGTCTTTCAAAGGTGCTCATAAAGA 59.821 40.000 0.00 0.00 0.00 2.52
210 211 5.179368 TCGTCTTTCAAAGGTGCTCATAAAG 59.821 40.000 0.00 0.00 0.00 1.85
211 212 5.049680 GTCGTCTTTCAAAGGTGCTCATAAA 60.050 40.000 0.00 0.00 0.00 1.40
212 213 4.451096 GTCGTCTTTCAAAGGTGCTCATAA 59.549 41.667 0.00 0.00 0.00 1.90
213 214 3.994392 GTCGTCTTTCAAAGGTGCTCATA 59.006 43.478 0.00 0.00 0.00 2.15
214 215 2.808543 GTCGTCTTTCAAAGGTGCTCAT 59.191 45.455 0.00 0.00 0.00 2.90
215 216 2.210116 GTCGTCTTTCAAAGGTGCTCA 58.790 47.619 0.00 0.00 0.00 4.26
216 217 1.192534 CGTCGTCTTTCAAAGGTGCTC 59.807 52.381 0.00 0.00 0.00 4.26
217 218 1.202486 TCGTCGTCTTTCAAAGGTGCT 60.202 47.619 0.00 0.00 0.00 4.40
218 219 1.192534 CTCGTCGTCTTTCAAAGGTGC 59.807 52.381 0.00 0.00 0.00 5.01
219 220 2.739292 TCTCGTCGTCTTTCAAAGGTG 58.261 47.619 0.00 0.00 0.00 4.00
220 221 3.121544 GTTCTCGTCGTCTTTCAAAGGT 58.878 45.455 0.00 0.00 0.00 3.50
221 222 2.153247 CGTTCTCGTCGTCTTTCAAAGG 59.847 50.000 0.00 0.00 0.00 3.11
222 223 3.404550 CGTTCTCGTCGTCTTTCAAAG 57.595 47.619 0.00 0.00 0.00 2.77
235 236 0.961358 AGTGGGAGGAGACGTTCTCG 60.961 60.000 0.00 0.00 44.28 4.04
236 237 0.528470 CAGTGGGAGGAGACGTTCTC 59.472 60.000 0.00 0.00 42.66 2.87
237 238 0.112606 TCAGTGGGAGGAGACGTTCT 59.887 55.000 0.00 0.00 0.00 3.01
238 239 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
239 240 1.276421 CATTCAGTGGGAGGAGACGTT 59.724 52.381 0.00 0.00 0.00 3.99
240 241 0.898320 CATTCAGTGGGAGGAGACGT 59.102 55.000 0.00 0.00 0.00 4.34
241 242 0.460987 GCATTCAGTGGGAGGAGACG 60.461 60.000 0.00 0.00 0.00 4.18
242 243 0.460987 CGCATTCAGTGGGAGGAGAC 60.461 60.000 0.00 0.00 43.02 3.36
243 244 1.900351 CGCATTCAGTGGGAGGAGA 59.100 57.895 0.00 0.00 43.02 3.71
244 245 1.817099 GCGCATTCAGTGGGAGGAG 60.817 63.158 0.30 0.00 43.02 3.69
245 246 1.913951 ATGCGCATTCAGTGGGAGGA 61.914 55.000 19.28 0.00 43.02 3.71
246 247 1.442526 GATGCGCATTCAGTGGGAGG 61.443 60.000 26.12 0.00 43.02 4.30
247 248 1.769098 CGATGCGCATTCAGTGGGAG 61.769 60.000 26.12 4.12 43.02 4.30
248 249 1.815003 CGATGCGCATTCAGTGGGA 60.815 57.895 26.12 0.00 43.02 4.37
249 250 2.711311 CGATGCGCATTCAGTGGG 59.289 61.111 26.12 4.47 43.21 4.61
260 261 0.811219 TCAGGATTTCCAGCGATGCG 60.811 55.000 0.00 0.00 38.89 4.73
261 262 1.382522 TTCAGGATTTCCAGCGATGC 58.617 50.000 0.00 0.00 38.89 3.91
262 263 5.756195 TTATTTCAGGATTTCCAGCGATG 57.244 39.130 0.00 0.00 38.89 3.84
263 264 6.966534 ATTTATTTCAGGATTTCCAGCGAT 57.033 33.333 0.00 0.00 38.89 4.58
264 265 6.376864 TGAATTTATTTCAGGATTTCCAGCGA 59.623 34.615 0.00 0.00 39.44 4.93
265 266 6.473455 GTGAATTTATTTCAGGATTTCCAGCG 59.527 38.462 0.00 0.00 44.89 5.18
266 267 7.761651 GTGAATTTATTTCAGGATTTCCAGC 57.238 36.000 0.00 0.00 44.89 4.85
275 276 8.471457 CGCATTTATTCGTGAATTTATTTCAGG 58.529 33.333 0.00 3.94 44.89 3.86
276 277 9.009327 ACGCATTTATTCGTGAATTTATTTCAG 57.991 29.630 0.00 0.00 44.89 3.02
277 278 8.903570 ACGCATTTATTCGTGAATTTATTTCA 57.096 26.923 0.00 0.00 42.09 2.69
289 290 1.130373 CTGGTGCACGCATTTATTCGT 59.870 47.619 11.45 0.00 39.79 3.85
290 291 1.531677 CCTGGTGCACGCATTTATTCG 60.532 52.381 11.45 0.00 0.00 3.34
291 292 1.742831 TCCTGGTGCACGCATTTATTC 59.257 47.619 11.45 0.00 0.00 1.75
292 293 1.832883 TCCTGGTGCACGCATTTATT 58.167 45.000 11.45 0.00 0.00 1.40
293 294 2.057137 ATCCTGGTGCACGCATTTAT 57.943 45.000 11.45 0.00 0.00 1.40
294 295 1.832883 AATCCTGGTGCACGCATTTA 58.167 45.000 11.45 0.00 0.00 1.40
295 296 0.968405 AAATCCTGGTGCACGCATTT 59.032 45.000 11.45 9.09 0.00 2.32
296 297 1.832883 TAAATCCTGGTGCACGCATT 58.167 45.000 11.45 3.20 0.00 3.56
297 298 1.832883 TTAAATCCTGGTGCACGCAT 58.167 45.000 11.45 0.00 0.00 4.73
298 299 1.268352 GTTTAAATCCTGGTGCACGCA 59.732 47.619 11.45 9.21 0.00 5.24
299 300 1.402325 GGTTTAAATCCTGGTGCACGC 60.402 52.381 11.45 4.50 0.00 5.34
300 301 1.201414 GGGTTTAAATCCTGGTGCACG 59.799 52.381 10.45 0.00 0.00 5.34
301 302 2.525368 AGGGTTTAAATCCTGGTGCAC 58.475 47.619 19.53 8.80 38.36 4.57
302 303 2.990740 AGGGTTTAAATCCTGGTGCA 57.009 45.000 19.53 0.00 38.36 4.57
319 320 1.700042 GGTATCTCCAGCCCACCAGG 61.700 65.000 0.00 0.00 35.73 4.45
320 321 0.982852 TGGTATCTCCAGCCCACCAG 60.983 60.000 0.00 0.00 41.93 4.00
321 322 1.082019 TGGTATCTCCAGCCCACCA 59.918 57.895 0.00 0.00 41.93 4.17
322 323 4.066614 TGGTATCTCCAGCCCACC 57.933 61.111 0.00 0.00 41.93 4.61
327 328 3.859808 GAGGGACTGTGGTATCTCCAGC 61.860 59.091 0.00 0.00 44.13 4.85
328 329 2.035632 GAGGGACTGTGGTATCTCCAG 58.964 57.143 0.00 0.00 44.13 3.86
329 330 1.646447 AGAGGGACTGTGGTATCTCCA 59.354 52.381 0.00 0.00 41.55 3.86
330 331 2.463047 AGAGGGACTGTGGTATCTCC 57.537 55.000 0.00 0.00 41.55 3.71
331 332 3.637694 GGTTAGAGGGACTGTGGTATCTC 59.362 52.174 0.00 0.00 41.55 2.75
332 333 3.012502 TGGTTAGAGGGACTGTGGTATCT 59.987 47.826 0.00 0.00 41.55 1.98
333 334 3.371965 TGGTTAGAGGGACTGTGGTATC 58.628 50.000 0.00 0.00 41.55 2.24
334 335 3.484953 TGGTTAGAGGGACTGTGGTAT 57.515 47.619 0.00 0.00 41.55 2.73
335 336 3.484953 ATGGTTAGAGGGACTGTGGTA 57.515 47.619 0.00 0.00 41.55 3.25
336 337 2.344093 ATGGTTAGAGGGACTGTGGT 57.656 50.000 0.00 0.00 41.55 4.16
337 338 2.571653 TGAATGGTTAGAGGGACTGTGG 59.428 50.000 0.00 0.00 41.55 4.17
338 339 3.981071 TGAATGGTTAGAGGGACTGTG 57.019 47.619 0.00 0.00 41.55 3.66
339 340 3.009143 GGTTGAATGGTTAGAGGGACTGT 59.991 47.826 0.00 0.00 41.55 3.55
340 341 3.009033 TGGTTGAATGGTTAGAGGGACTG 59.991 47.826 0.00 0.00 41.55 3.51
342 343 3.244770 TGTGGTTGAATGGTTAGAGGGAC 60.245 47.826 0.00 0.00 0.00 4.46
343 344 2.983192 TGTGGTTGAATGGTTAGAGGGA 59.017 45.455 0.00 0.00 0.00 4.20
344 345 3.009033 TCTGTGGTTGAATGGTTAGAGGG 59.991 47.826 0.00 0.00 0.00 4.30
345 346 4.286297 TCTGTGGTTGAATGGTTAGAGG 57.714 45.455 0.00 0.00 0.00 3.69
346 347 5.124457 CCAATCTGTGGTTGAATGGTTAGAG 59.876 44.000 0.00 0.00 43.20 2.43
347 348 5.009631 CCAATCTGTGGTTGAATGGTTAGA 58.990 41.667 0.00 0.00 43.20 2.10
348 349 5.314923 CCAATCTGTGGTTGAATGGTTAG 57.685 43.478 0.00 0.00 43.20 2.34
360 361 8.324110 ATGTCTACATAACGAACCAATCTGTGG 61.324 40.741 0.00 0.00 43.53 4.17
361 362 5.867174 TGTCTACATAACGAACCAATCTGTG 59.133 40.000 0.00 0.00 0.00 3.66
362 363 6.032956 TGTCTACATAACGAACCAATCTGT 57.967 37.500 0.00 0.00 0.00 3.41
363 364 8.818141 ATATGTCTACATAACGAACCAATCTG 57.182 34.615 6.89 0.00 41.60 2.90
364 365 9.832445 AAATATGTCTACATAACGAACCAATCT 57.168 29.630 6.89 0.00 41.60 2.40
395 396 6.073222 ACCGAACAAAATGAGTGAATCTACAC 60.073 38.462 0.00 0.00 40.60 2.90
396 397 5.995282 ACCGAACAAAATGAGTGAATCTACA 59.005 36.000 0.00 0.00 0.00 2.74
397 398 6.481954 ACCGAACAAAATGAGTGAATCTAC 57.518 37.500 0.00 0.00 0.00 2.59
398 399 6.309494 CGTACCGAACAAAATGAGTGAATCTA 59.691 38.462 0.00 0.00 0.00 1.98
399 400 5.120208 CGTACCGAACAAAATGAGTGAATCT 59.880 40.000 0.00 0.00 0.00 2.40
400 401 5.107220 ACGTACCGAACAAAATGAGTGAATC 60.107 40.000 0.00 0.00 0.00 2.52
401 402 4.753107 ACGTACCGAACAAAATGAGTGAAT 59.247 37.500 0.00 0.00 0.00 2.57
402 403 4.025563 CACGTACCGAACAAAATGAGTGAA 60.026 41.667 0.00 0.00 0.00 3.18
403 404 3.491639 CACGTACCGAACAAAATGAGTGA 59.508 43.478 0.00 0.00 0.00 3.41
404 405 3.363575 CCACGTACCGAACAAAATGAGTG 60.364 47.826 0.00 0.00 0.00 3.51
405 406 2.803956 CCACGTACCGAACAAAATGAGT 59.196 45.455 0.00 0.00 0.00 3.41
406 407 2.803956 ACCACGTACCGAACAAAATGAG 59.196 45.455 0.00 0.00 0.00 2.90
407 408 2.801679 GACCACGTACCGAACAAAATGA 59.198 45.455 0.00 0.00 0.00 2.57
408 409 2.410517 CGACCACGTACCGAACAAAATG 60.411 50.000 0.00 0.00 34.56 2.32
409 410 1.794116 CGACCACGTACCGAACAAAAT 59.206 47.619 0.00 0.00 34.56 1.82
410 411 1.207390 CGACCACGTACCGAACAAAA 58.793 50.000 0.00 0.00 34.56 2.44
411 412 2.884146 CGACCACGTACCGAACAAA 58.116 52.632 0.00 0.00 34.56 2.83
412 413 4.632037 CGACCACGTACCGAACAA 57.368 55.556 0.00 0.00 34.56 2.83
422 423 0.167470 AGTGACGACATACGACCACG 59.833 55.000 0.00 0.00 45.23 4.94
423 424 1.983605 CAAGTGACGACATACGACCAC 59.016 52.381 0.00 0.00 45.77 4.16
424 425 1.610038 ACAAGTGACGACATACGACCA 59.390 47.619 0.00 0.00 45.77 4.02
425 426 2.342910 ACAAGTGACGACATACGACC 57.657 50.000 0.00 0.00 45.77 4.79
426 427 3.302555 TCAACAAGTGACGACATACGAC 58.697 45.455 0.00 0.00 45.77 4.34
427 428 3.629438 TCAACAAGTGACGACATACGA 57.371 42.857 0.00 0.00 45.77 3.43
429 430 7.352739 AGAAATTTCAACAAGTGACGACATAC 58.647 34.615 19.99 0.00 35.39 2.39
430 431 7.490962 AGAAATTTCAACAAGTGACGACATA 57.509 32.000 19.99 0.00 35.39 2.29
431 432 6.377327 AGAAATTTCAACAAGTGACGACAT 57.623 33.333 19.99 0.00 35.39 3.06
432 433 5.811399 AGAAATTTCAACAAGTGACGACA 57.189 34.783 19.99 0.00 35.39 4.35
433 434 8.609478 TTTTAGAAATTTCAACAAGTGACGAC 57.391 30.769 19.99 0.00 35.39 4.34
434 435 9.284594 CTTTTTAGAAATTTCAACAAGTGACGA 57.715 29.630 19.99 0.00 35.39 4.20
435 436 9.284594 TCTTTTTAGAAATTTCAACAAGTGACG 57.715 29.630 19.99 0.00 35.39 4.35
455 456 9.908152 CTCGGTTTCCTAAATATTTGTCTTTTT 57.092 29.630 11.05 0.00 0.00 1.94
456 457 8.027189 GCTCGGTTTCCTAAATATTTGTCTTTT 58.973 33.333 11.05 0.00 0.00 2.27
457 458 7.535997 GCTCGGTTTCCTAAATATTTGTCTTT 58.464 34.615 11.05 0.00 0.00 2.52
458 459 6.183360 CGCTCGGTTTCCTAAATATTTGTCTT 60.183 38.462 11.05 0.00 0.00 3.01
459 460 5.293569 CGCTCGGTTTCCTAAATATTTGTCT 59.706 40.000 11.05 0.00 0.00 3.41
460 461 5.292589 TCGCTCGGTTTCCTAAATATTTGTC 59.707 40.000 11.05 0.00 0.00 3.18
461 462 5.180271 TCGCTCGGTTTCCTAAATATTTGT 58.820 37.500 11.05 0.00 0.00 2.83
462 463 5.293569 ACTCGCTCGGTTTCCTAAATATTTG 59.706 40.000 11.05 1.40 0.00 2.32
463 464 5.425630 ACTCGCTCGGTTTCCTAAATATTT 58.574 37.500 5.89 5.89 0.00 1.40
464 465 5.019785 ACTCGCTCGGTTTCCTAAATATT 57.980 39.130 0.00 0.00 0.00 1.28
465 466 4.667519 ACTCGCTCGGTTTCCTAAATAT 57.332 40.909 0.00 0.00 0.00 1.28
466 467 5.779529 ATACTCGCTCGGTTTCCTAAATA 57.220 39.130 0.00 0.00 0.00 1.40
467 468 4.667519 ATACTCGCTCGGTTTCCTAAAT 57.332 40.909 0.00 0.00 0.00 1.40
468 469 4.460948 AATACTCGCTCGGTTTCCTAAA 57.539 40.909 0.00 0.00 0.00 1.85
469 470 5.779529 ATAATACTCGCTCGGTTTCCTAA 57.220 39.130 0.00 0.00 0.00 2.69
470 471 5.779529 AATAATACTCGCTCGGTTTCCTA 57.220 39.130 0.00 0.00 0.00 2.94
471 472 4.667519 AATAATACTCGCTCGGTTTCCT 57.332 40.909 0.00 0.00 0.00 3.36
472 473 8.592998 CATATAAATAATACTCGCTCGGTTTCC 58.407 37.037 0.00 0.00 0.00 3.13
473 474 8.592998 CCATATAAATAATACTCGCTCGGTTTC 58.407 37.037 0.00 0.00 0.00 2.78
474 475 8.308931 TCCATATAAATAATACTCGCTCGGTTT 58.691 33.333 0.00 0.00 0.00 3.27
475 476 7.758528 GTCCATATAAATAATACTCGCTCGGTT 59.241 37.037 0.00 0.00 0.00 4.44
476 477 7.094075 TGTCCATATAAATAATACTCGCTCGGT 60.094 37.037 0.00 0.00 0.00 4.69
477 478 7.255569 TGTCCATATAAATAATACTCGCTCGG 58.744 38.462 0.00 0.00 0.00 4.63
478 479 7.043986 GCTGTCCATATAAATAATACTCGCTCG 60.044 40.741 0.00 0.00 0.00 5.03
479 480 7.043986 CGCTGTCCATATAAATAATACTCGCTC 60.044 40.741 0.00 0.00 0.00 5.03
480 481 6.752351 CGCTGTCCATATAAATAATACTCGCT 59.248 38.462 0.00 0.00 0.00 4.93
481 482 6.508088 GCGCTGTCCATATAAATAATACTCGC 60.508 42.308 0.00 0.00 0.00 5.03
482 483 6.291112 CGCGCTGTCCATATAAATAATACTCG 60.291 42.308 5.56 0.00 0.00 4.18
483 484 6.508088 GCGCGCTGTCCATATAAATAATACTC 60.508 42.308 26.67 0.00 0.00 2.59
484 485 5.291128 GCGCGCTGTCCATATAAATAATACT 59.709 40.000 26.67 0.00 0.00 2.12
485 486 5.490213 GCGCGCTGTCCATATAAATAATAC 58.510 41.667 26.67 0.00 0.00 1.89
490 491 1.156736 GGCGCGCTGTCCATATAAAT 58.843 50.000 32.29 0.00 0.00 1.40
534 535 1.503818 CTCGTGTTTTGTGTCCGGGG 61.504 60.000 0.00 0.00 0.00 5.73
542 543 2.203153 AGCGGCCTCGTGTTTTGT 60.203 55.556 0.00 0.00 38.89 2.83
595 596 1.710013 CTCCTGAAACGCTTTCGCTA 58.290 50.000 6.16 0.00 42.55 4.26
599 600 0.586802 AACGCTCCTGAAACGCTTTC 59.413 50.000 4.24 4.24 40.08 2.62
678 679 3.443479 AGGGCGGAGAGGGGAGAT 61.443 66.667 0.00 0.00 0.00 2.75
884 885 2.520020 AGTCACCGACGTGTGGGA 60.520 61.111 8.11 0.00 41.09 4.37
901 902 2.047655 CTAGGGTTTCCACGCGCA 60.048 61.111 5.73 0.00 40.82 6.09
907 908 2.124411 GCCTATGACCTAGGGTTTCCA 58.876 52.381 14.81 3.25 46.39 3.53
1004 1005 4.020573 AGGGGAAAATTTTCGGATTTGGAC 60.021 41.667 21.53 7.06 38.06 4.02
1285 1289 2.364970 AGAATCATCTGCGAGGAGAAGG 59.635 50.000 0.00 0.00 33.59 3.46
1462 1466 2.814336 GCCTTGAGGTAGTTGTTCTTGG 59.186 50.000 0.00 0.00 37.57 3.61
2326 2341 7.332926 CCACCATGCTATGTACTAATGAATCTC 59.667 40.741 0.00 0.00 0.00 2.75
2331 2346 4.347876 AGCCACCATGCTATGTACTAATGA 59.652 41.667 0.00 0.00 40.56 2.57
2384 2474 4.022416 CACTGGCCAGTACAAGCATTTTTA 60.022 41.667 37.27 0.00 40.20 1.52
2496 2589 7.602517 ATGCAGAAGTAGATTGACAGTTAAC 57.397 36.000 0.00 0.00 0.00 2.01
2591 2684 4.503007 CGAAGTACGAAACATGGTGGATAG 59.497 45.833 0.00 0.00 45.77 2.08
2593 2686 3.259064 CGAAGTACGAAACATGGTGGAT 58.741 45.455 0.00 0.00 45.77 3.41
2594 2687 2.036217 ACGAAGTACGAAACATGGTGGA 59.964 45.455 0.00 0.00 41.94 4.02
2595 2688 2.409975 ACGAAGTACGAAACATGGTGG 58.590 47.619 0.00 0.00 41.94 4.61
2614 2710 2.609459 CGATCAGTGCAATCCCAACTAC 59.391 50.000 0.00 0.00 0.00 2.73
2617 2713 1.453155 ACGATCAGTGCAATCCCAAC 58.547 50.000 0.00 0.00 0.00 3.77
2674 2770 5.556006 TTCACCATCAGATGCATCTATCA 57.444 39.130 28.27 15.62 34.85 2.15
2757 2853 5.448438 TCAGCAAGCAACAAAATACTAACG 58.552 37.500 0.00 0.00 0.00 3.18
2798 2894 3.392947 TCCCAAACTCATCCACAGTACAA 59.607 43.478 0.00 0.00 0.00 2.41
2799 2895 2.976185 TCCCAAACTCATCCACAGTACA 59.024 45.455 0.00 0.00 0.00 2.90
2802 2898 2.881403 GCATCCCAAACTCATCCACAGT 60.881 50.000 0.00 0.00 0.00 3.55
2807 2903 0.749454 AGCGCATCCCAAACTCATCC 60.749 55.000 11.47 0.00 0.00 3.51
2808 2904 0.659957 GAGCGCATCCCAAACTCATC 59.340 55.000 11.47 0.00 0.00 2.92
2809 2905 0.254178 AGAGCGCATCCCAAACTCAT 59.746 50.000 11.47 0.00 0.00 2.90
2810 2906 0.036732 AAGAGCGCATCCCAAACTCA 59.963 50.000 11.47 0.00 0.00 3.41
2811 2907 0.729690 GAAGAGCGCATCCCAAACTC 59.270 55.000 11.47 0.00 0.00 3.01
2812 2908 0.678048 GGAAGAGCGCATCCCAAACT 60.678 55.000 11.47 0.00 0.00 2.66
2813 2909 1.803289 GGAAGAGCGCATCCCAAAC 59.197 57.895 11.47 0.00 0.00 2.93
2814 2910 4.319133 GGAAGAGCGCATCCCAAA 57.681 55.556 11.47 0.00 0.00 3.28
2827 2932 3.149981 GTGAGAGGAAAACAAGGGGAAG 58.850 50.000 0.00 0.00 0.00 3.46
2835 2940 1.337823 GCGCCTAGTGAGAGGAAAACA 60.338 52.381 0.00 0.00 39.15 2.83
3000 3514 7.493645 CCAAATCCAAGGCAAGATAAAATCTTC 59.506 37.037 0.00 0.00 46.17 2.87
3010 3524 3.303938 TCAAACCAAATCCAAGGCAAGA 58.696 40.909 0.00 0.00 0.00 3.02
3076 3590 4.858850 TGATGATTGTGAGGGCAATAACT 58.141 39.130 0.00 0.00 38.98 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.