Multiple sequence alignment - TraesCS5B01G203300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G203300 chr5B 100.000 3900 0 0 2664 6563 369619641 369615742 0.000000e+00 7203.0
1 TraesCS5B01G203300 chr5B 100.000 2397 0 0 1 2397 369622304 369619908 0.000000e+00 4427.0
2 TraesCS5B01G203300 chr5B 98.182 55 1 0 920 974 471407805 471407859 5.420000e-16 97.1
3 TraesCS5B01G203300 chr5D 95.406 2917 92 22 2696 5590 319324208 319321312 0.000000e+00 4606.0
4 TraesCS5B01G203300 chr5D 93.607 829 33 11 5748 6563 319321311 319320490 0.000000e+00 1219.0
5 TraesCS5B01G203300 chr5D 89.084 742 52 12 1668 2397 319324947 319324223 0.000000e+00 894.0
6 TraesCS5B01G203300 chr5D 89.067 375 29 6 1310 1673 319325477 319325104 7.760000e-124 455.0
7 TraesCS5B01G203300 chr5D 87.000 300 14 3 974 1250 319325791 319325494 1.370000e-81 315.0
8 TraesCS5B01G203300 chr5D 91.566 166 13 1 5592 5756 461072761 461072596 1.840000e-55 228.0
9 TraesCS5B01G203300 chr5D 91.111 45 2 2 4148 4192 285464066 285464024 7.110000e-05 60.2
10 TraesCS5B01G203300 chr5A 91.168 1472 90 18 2666 4111 414773622 414775079 0.000000e+00 1962.0
11 TraesCS5B01G203300 chr5A 92.619 840 34 9 5748 6563 414776780 414777615 0.000000e+00 1182.0
12 TraesCS5B01G203300 chr5A 89.517 849 45 11 974 1797 414772242 414773071 0.000000e+00 1035.0
13 TraesCS5B01G203300 chr5A 85.776 921 130 1 4 924 654175339 654174420 0.000000e+00 974.0
14 TraesCS5B01G203300 chr5A 94.306 562 27 4 5032 5590 414776220 414776779 0.000000e+00 856.0
15 TraesCS5B01G203300 chr5A 92.195 410 29 3 4116 4523 414775254 414775662 1.590000e-160 577.0
16 TraesCS5B01G203300 chr5A 92.734 289 20 1 5049 5336 650684474 650684186 3.660000e-112 416.0
17 TraesCS5B01G203300 chr5A 95.939 197 5 1 4522 4718 414775821 414776014 3.820000e-82 316.0
18 TraesCS5B01G203300 chr5A 90.286 175 16 1 5588 5762 320214407 320214234 1.840000e-55 228.0
19 TraesCS5B01G203300 chr5A 90.000 160 14 2 1910 2068 414773072 414773230 8.630000e-49 206.0
20 TraesCS5B01G203300 chr5A 96.667 90 1 2 2122 2210 414773432 414773520 1.470000e-31 148.0
21 TraesCS5B01G203300 chr1B 89.514 925 92 5 1 924 49457243 49458163 0.000000e+00 1166.0
22 TraesCS5B01G203300 chr1B 92.517 294 20 2 5049 5341 9639216 9638924 2.830000e-113 420.0
23 TraesCS5B01G203300 chr1B 90.753 292 25 1 5047 5338 13516040 13516329 7.980000e-104 388.0
24 TraesCS5B01G203300 chr7B 89.468 921 96 1 4 924 245639697 245638778 0.000000e+00 1162.0
25 TraesCS5B01G203300 chr7B 96.552 58 2 0 920 977 73180630 73180573 5.420000e-16 97.1
26 TraesCS5B01G203300 chr7B 96.552 58 2 0 920 977 594403112 594403055 5.420000e-16 97.1
27 TraesCS5B01G203300 chr7B 98.182 55 1 0 920 974 740072508 740072562 5.420000e-16 97.1
28 TraesCS5B01G203300 chr4A 89.468 921 96 1 4 924 646810617 646809698 0.000000e+00 1162.0
29 TraesCS5B01G203300 chr4A 91.003 289 24 2 5049 5336 589668008 589667721 7.980000e-104 388.0
30 TraesCS5B01G203300 chr6D 88.286 922 107 1 1 922 47049955 47050875 0.000000e+00 1103.0
31 TraesCS5B01G203300 chr6D 90.857 175 15 1 5589 5763 145462462 145462635 3.960000e-57 233.0
32 TraesCS5B01G203300 chr2B 87.863 931 109 4 1 930 109992004 109992931 0.000000e+00 1090.0
33 TraesCS5B01G203300 chr2B 92.442 172 11 2 5587 5758 540431247 540431416 1.830000e-60 244.0
34 TraesCS5B01G203300 chr2B 96.552 58 2 0 920 977 102946045 102945988 5.420000e-16 97.1
35 TraesCS5B01G203300 chr3D 87.879 924 104 5 1 924 605090982 605091897 0.000000e+00 1079.0
36 TraesCS5B01G203300 chr3D 92.547 161 12 0 5592 5752 598889891 598889731 1.420000e-56 231.0
37 TraesCS5B01G203300 chr3D 88.947 190 16 4 5571 5760 128213993 128214177 5.120000e-56 230.0
38 TraesCS5B01G203300 chr3D 97.059 34 1 0 4159 4192 80944795 80944762 2.560000e-04 58.4
39 TraesCS5B01G203300 chr7D 87.662 924 112 2 1 924 454928183 454929104 0.000000e+00 1074.0
40 TraesCS5B01G203300 chr7D 90.533 169 15 1 5588 5756 397555079 397554912 8.570000e-54 222.0
41 TraesCS5B01G203300 chr2D 86.688 924 122 1 1 924 36359935 36360857 0.000000e+00 1024.0
42 TraesCS5B01G203300 chr2D 90.741 162 15 0 5592 5753 134301490 134301651 3.990000e-52 217.0
43 TraesCS5B01G203300 chr1A 92.734 289 20 1 5049 5336 61026697 61026985 3.660000e-112 416.0
44 TraesCS5B01G203300 chr1A 93.125 160 11 0 5592 5751 106220556 106220715 1.100000e-57 235.0
45 TraesCS5B01G203300 chr7A 84.362 243 28 9 4772 5007 172416461 172416700 5.120000e-56 230.0
46 TraesCS5B01G203300 chr6B 91.667 84 6 1 3535 3618 314884780 314884862 1.500000e-21 115.0
47 TraesCS5B01G203300 chr6B 96.552 58 2 0 920 977 59675399 59675342 5.420000e-16 97.1
48 TraesCS5B01G203300 chr6B 96.552 58 2 0 920 977 454459408 454459351 5.420000e-16 97.1
49 TraesCS5B01G203300 chr3B 76.147 218 41 11 4788 4999 178479920 178480132 3.240000e-18 104.0
50 TraesCS5B01G203300 chr6A 98.182 55 1 0 920 974 605322864 605322918 5.420000e-16 97.1
51 TraesCS5B01G203300 chr4B 98.182 55 1 0 920 974 610895657 610895711 5.420000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G203300 chr5B 369615742 369622304 6562 True 5815.00 7203 100.000000 1 6563 2 chr5B.!!$R1 6562
1 TraesCS5B01G203300 chr5D 319320490 319325791 5301 True 1497.80 4606 90.832800 974 6563 5 chr5D.!!$R3 5589
2 TraesCS5B01G203300 chr5A 654174420 654175339 919 True 974.00 974 85.776000 4 924 1 chr5A.!!$R3 920
3 TraesCS5B01G203300 chr5A 414772242 414777615 5373 False 785.25 1962 92.801375 974 6563 8 chr5A.!!$F1 5589
4 TraesCS5B01G203300 chr1B 49457243 49458163 920 False 1166.00 1166 89.514000 1 924 1 chr1B.!!$F2 923
5 TraesCS5B01G203300 chr7B 245638778 245639697 919 True 1162.00 1162 89.468000 4 924 1 chr7B.!!$R2 920
6 TraesCS5B01G203300 chr4A 646809698 646810617 919 True 1162.00 1162 89.468000 4 924 1 chr4A.!!$R2 920
7 TraesCS5B01G203300 chr6D 47049955 47050875 920 False 1103.00 1103 88.286000 1 922 1 chr6D.!!$F1 921
8 TraesCS5B01G203300 chr2B 109992004 109992931 927 False 1090.00 1090 87.863000 1 930 1 chr2B.!!$F1 929
9 TraesCS5B01G203300 chr3D 605090982 605091897 915 False 1079.00 1079 87.879000 1 924 1 chr3D.!!$F2 923
10 TraesCS5B01G203300 chr7D 454928183 454929104 921 False 1074.00 1074 87.662000 1 924 1 chr7D.!!$F1 923
11 TraesCS5B01G203300 chr2D 36359935 36360857 922 False 1024.00 1024 86.688000 1 924 1 chr2D.!!$F1 923

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
701 702 0.321564 TGGTTGCCTCCGATTGTCAG 60.322 55.000 0.00 0.0 0.00 3.51 F
1226 1250 0.179108 CTGCGCTGGTACTTACCCTC 60.179 60.000 9.73 0.0 45.87 4.30 F
1296 1320 0.733729 CGACCTAGTAGTTGCGAGCT 59.266 55.000 0.00 0.0 0.00 4.09 F
1952 2155 1.224315 CATCCCCCTCATGCGTTGA 59.776 57.895 0.00 0.0 0.00 3.18 F
2917 3298 0.321298 ATTGTGTACCGCTGACACCC 60.321 55.000 9.35 0.0 45.43 4.61 F
3626 4017 0.255890 GCAGCCAGGGGTATCAAGAA 59.744 55.000 0.00 0.0 0.00 2.52 F
4802 5688 0.391528 GGGGCATGGCAATTGTGAAC 60.392 55.000 22.06 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2348 2701 0.251121 TGAACCACCACCGCATCATT 60.251 50.000 0.00 0.0 0.00 2.57 R
2860 3241 0.324645 TACCGGAACCCTACCCTCAC 60.325 60.000 9.46 0.0 0.00 3.51 R
2861 3242 0.413037 TTACCGGAACCCTACCCTCA 59.587 55.000 9.46 0.0 0.00 3.86 R
3235 3626 0.950836 TTTTCCACACCATCAGCACG 59.049 50.000 0.00 0.0 0.00 5.34 R
4411 4975 1.680522 CCTCCTCAGCATGCCTACGT 61.681 60.000 15.66 0.0 34.76 3.57 R
4949 5837 1.134729 GGGATGCATGGCAAAACGAAT 60.135 47.619 2.46 0.0 43.62 3.34 R
5687 6580 1.466856 ACGGTCTACATACGGAGCAA 58.533 50.000 0.00 0.0 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.488153 GGTTCGGATGTTTCTTTGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
41 42 7.001674 TGTTTCTTTGGAGGTTATCTAAGCAA 58.998 34.615 2.37 0.00 36.22 3.91
77 78 3.188786 GTCCGTGCTCATCGCCAC 61.189 66.667 0.00 0.00 38.05 5.01
83 84 1.020861 GTGCTCATCGCCACATGACA 61.021 55.000 0.00 0.00 38.05 3.58
115 116 2.425592 CGGGCTGTGTGGAGTTCA 59.574 61.111 0.00 0.00 0.00 3.18
121 122 2.508526 GCTGTGTGGAGTTCAGGATTT 58.491 47.619 0.00 0.00 0.00 2.17
155 156 0.465705 TGATCGAATGCACCTCCTCC 59.534 55.000 0.00 0.00 0.00 4.30
169 170 2.997315 CTCCAGGAGCGTGTGGGA 60.997 66.667 2.60 0.00 34.27 4.37
219 220 2.990066 AATAGCTACAGTGGAGCCAC 57.010 50.000 24.17 11.67 46.50 5.01
280 281 1.189989 CGTGATGAATTTGCGCTCGC 61.190 55.000 9.73 7.38 42.35 5.03
293 294 2.711311 CTCGCATCGGTGGCATTG 59.289 61.111 0.00 0.00 0.00 2.82
302 303 1.250154 CGGTGGCATTGTGGTCCATT 61.250 55.000 0.00 0.00 31.83 3.16
416 417 4.387598 GCATAGTCAAGGAGAAGATGCAT 58.612 43.478 0.00 0.00 42.22 3.96
425 426 4.008330 AGGAGAAGATGCATCAAACTGTG 58.992 43.478 27.81 0.00 0.00 3.66
458 459 1.893808 CACAGGACAGGCACACACC 60.894 63.158 0.00 0.00 0.00 4.16
487 488 3.228759 GCCACCGCCGGGATACTA 61.229 66.667 8.57 0.00 36.97 1.82
494 495 2.140717 CCGCCGGGATACTACAAAATC 58.859 52.381 2.18 0.00 34.06 2.17
500 501 5.743714 GCCGGGATACTACAAAATCCATGTA 60.744 44.000 2.18 0.00 43.01 2.29
512 513 1.182667 TCCATGTAGACGGTGGAGTG 58.817 55.000 3.27 0.00 37.12 3.51
515 516 1.066858 CATGTAGACGGTGGAGTGCTT 60.067 52.381 0.00 0.00 0.00 3.91
527 528 2.069165 GAGTGCTTGGAACCAGGGGT 62.069 60.000 5.20 0.00 37.65 4.95
530 531 2.440599 CTTGGAACCAGGGGTGGG 59.559 66.667 0.00 0.00 35.34 4.61
562 563 6.642540 GCAACGATATGTAGAGATGAACATGA 59.357 38.462 0.00 0.00 0.00 3.07
582 583 7.573710 ACATGAAAACTATATGGGTAGCTCAA 58.426 34.615 0.00 0.00 0.00 3.02
584 585 7.195374 TGAAAACTATATGGGTAGCTCAACT 57.805 36.000 0.00 0.00 0.00 3.16
609 610 4.641396 TGTCGTTCAAGGATTCACAGATT 58.359 39.130 0.00 0.00 0.00 2.40
632 633 2.529780 CAACTTTGGAAGCAATGGCA 57.470 45.000 0.00 0.00 44.61 4.92
636 637 2.369532 ACTTTGGAAGCAATGGCATGTT 59.630 40.909 0.00 0.00 44.61 2.71
644 645 0.458669 CAATGGCATGTTGAGAGGCC 59.541 55.000 0.00 0.00 46.58 5.19
667 668 1.827969 GGCTCTAGCAGAAGACCTTGA 59.172 52.381 4.07 0.00 44.36 3.02
686 687 4.751767 TGAAATCCAAAGCTTTGTGGTT 57.248 36.364 31.67 23.30 36.45 3.67
695 696 1.244019 GCTTTGTGGTTGCCTCCGAT 61.244 55.000 0.00 0.00 0.00 4.18
701 702 0.321564 TGGTTGCCTCCGATTGTCAG 60.322 55.000 0.00 0.00 0.00 3.51
716 717 1.973515 TGTCAGCAAGTGGTCTCAGAT 59.026 47.619 0.00 0.00 0.00 2.90
723 724 4.223700 AGCAAGTGGTCTCAGATATCAACA 59.776 41.667 5.32 0.00 0.00 3.33
725 726 5.007430 GCAAGTGGTCTCAGATATCAACATG 59.993 44.000 5.32 0.00 0.00 3.21
735 736 5.072736 TCAGATATCAACATGGGAGCAAGAT 59.927 40.000 5.32 0.00 0.00 2.40
748 749 4.384647 GGGAGCAAGATGAACTTATGGAGT 60.385 45.833 0.00 0.00 41.47 3.85
782 783 9.152327 AGAGAGATAAACATTAGATCATCACCA 57.848 33.333 0.00 0.00 0.00 4.17
856 857 5.237779 CACCGTCTAGCCAAGTTTTCTTTTA 59.762 40.000 0.00 0.00 38.17 1.52
862 863 6.987992 TCTAGCCAAGTTTTCTTTTACGAGAA 59.012 34.615 0.00 0.00 38.17 2.87
870 871 4.950205 TTCTTTTACGAGAAGACCAGGT 57.050 40.909 0.00 0.00 33.15 4.00
913 914 3.246301 CCCCATGACCTCAGATGTATCT 58.754 50.000 0.00 0.00 37.72 1.98
993 994 1.588667 CACTTGCACGGTTGTTGCC 60.589 57.895 0.00 0.00 0.00 4.52
1026 1027 4.180946 CGCGAGACAGAGACCCGG 62.181 72.222 0.00 0.00 0.00 5.73
1031 1032 4.459089 GACAGAGACCCGGCAGCC 62.459 72.222 0.00 0.00 0.00 4.85
1226 1250 0.179108 CTGCGCTGGTACTTACCCTC 60.179 60.000 9.73 0.00 45.87 4.30
1240 1264 1.520787 CCCTCGAATTTCCCCGTCG 60.521 63.158 0.00 0.00 36.12 5.12
1264 1288 1.978782 GCGTGCAATTTTGAGCAGTAC 59.021 47.619 0.00 0.00 42.14 2.73
1270 1294 5.569059 GTGCAATTTTGAGCAGTACATACAC 59.431 40.000 0.00 0.00 42.14 2.90
1272 1296 4.600012 ATTTTGAGCAGTACATACACGC 57.400 40.909 0.00 0.00 0.00 5.34
1286 1310 2.124983 ACGCGCTCCGACCTAGTA 60.125 61.111 5.73 0.00 41.02 1.82
1287 1311 2.178890 ACGCGCTCCGACCTAGTAG 61.179 63.158 5.73 0.00 41.02 2.57
1288 1312 2.178890 CGCGCTCCGACCTAGTAGT 61.179 63.158 5.56 0.00 40.02 2.73
1296 1320 0.733729 CGACCTAGTAGTTGCGAGCT 59.266 55.000 0.00 0.00 0.00 4.09
1300 1324 2.094130 ACCTAGTAGTTGCGAGCTTTCC 60.094 50.000 0.00 0.00 0.00 3.13
1434 1458 1.358759 GTTTATTGCGGGCCGATGG 59.641 57.895 33.44 0.00 0.00 3.51
1495 1522 3.352648 TGCAAAAATCTGGGTACTAGGC 58.647 45.455 0.00 0.00 37.60 3.93
1568 1603 1.229428 CATGGTTGAGTGAGTTGCGT 58.771 50.000 0.00 0.00 0.00 5.24
1614 1649 2.238521 GGTTCTGTTGCCCAATTCAGA 58.761 47.619 0.00 0.00 35.54 3.27
1629 1664 4.858965 ATTCAGATCCAAGCTCCTCTTT 57.141 40.909 0.00 0.00 31.27 2.52
1660 1695 5.242434 AGCAACCACTGTTCATATAAACGA 58.758 37.500 0.00 0.00 30.42 3.85
1665 1700 7.129109 ACCACTGTTCATATAAACGAAACTG 57.871 36.000 0.00 0.00 31.58 3.16
1669 1704 9.741168 CACTGTTCATATAAACGAAACTGTAAG 57.259 33.333 0.00 0.00 33.72 2.34
1723 1919 5.354234 GTGGTTGGTAATTCTGTCATCGATT 59.646 40.000 0.00 0.00 0.00 3.34
1726 1922 7.040062 TGGTTGGTAATTCTGTCATCGATTTTT 60.040 33.333 0.00 0.00 0.00 1.94
1777 1974 8.565416 CAAAACCTAATTATACGGAGAAATCCC 58.435 37.037 0.00 0.00 0.00 3.85
1797 1994 3.518590 CCCTCAGCTCAAATTGAATTGC 58.481 45.455 0.00 0.00 0.00 3.56
1809 2006 7.262772 TCAAATTGAATTGCAGGATGATTCTC 58.737 34.615 8.98 0.00 39.69 2.87
1816 2013 7.282901 TGAATTGCAGGATGATTCTCGATAAAA 59.717 33.333 8.98 0.00 39.69 1.52
1819 2016 5.049198 TGCAGGATGATTCTCGATAAAATGC 60.049 40.000 0.00 0.00 39.69 3.56
1828 2025 3.871006 TCTCGATAAAATGCTGCATTCGT 59.129 39.130 26.40 19.34 32.43 3.85
1829 2026 5.047188 TCTCGATAAAATGCTGCATTCGTA 58.953 37.500 26.40 20.66 32.43 3.43
1830 2027 5.696270 TCTCGATAAAATGCTGCATTCGTAT 59.304 36.000 26.40 23.70 32.43 3.06
1837 2034 4.185475 AATGCTGCATTCGTATGGGACAA 61.185 43.478 21.48 0.00 32.26 3.18
1854 2051 5.651139 TGGGACAACATAGAGTCACTAGTAC 59.349 44.000 0.00 0.00 38.93 2.73
1887 2084 3.257393 ACACGAGCTCACAAATCAGATC 58.743 45.455 15.40 0.00 0.00 2.75
1890 2087 5.045872 CACGAGCTCACAAATCAGATCATA 58.954 41.667 15.40 0.00 0.00 2.15
1950 2153 2.124151 GCATCCCCCTCATGCGTT 60.124 61.111 0.00 0.00 37.51 4.84
1952 2155 1.224315 CATCCCCCTCATGCGTTGA 59.776 57.895 0.00 0.00 0.00 3.18
1985 2188 2.711542 CCTATGGTATTTGGGCGATCC 58.288 52.381 0.00 0.00 0.00 3.36
2019 2222 7.628769 TGCACATCATCTACACATTTATTGT 57.371 32.000 0.00 0.00 39.91 2.71
2055 2259 8.642935 TTCAACATGGTTTATGATGGAAGTAA 57.357 30.769 0.00 0.00 39.34 2.24
2228 2581 4.882842 GGATCTCCCTCTTAATCCTGAC 57.117 50.000 0.00 0.00 35.75 3.51
2229 2582 4.488770 GGATCTCCCTCTTAATCCTGACT 58.511 47.826 0.00 0.00 35.75 3.41
2230 2583 4.526650 GGATCTCCCTCTTAATCCTGACTC 59.473 50.000 0.00 0.00 35.75 3.36
2231 2584 3.917300 TCTCCCTCTTAATCCTGACTCC 58.083 50.000 0.00 0.00 0.00 3.85
2232 2585 3.533907 TCTCCCTCTTAATCCTGACTCCT 59.466 47.826 0.00 0.00 0.00 3.69
2233 2586 3.640967 CTCCCTCTTAATCCTGACTCCTG 59.359 52.174 0.00 0.00 0.00 3.86
2234 2587 3.272285 TCCCTCTTAATCCTGACTCCTGA 59.728 47.826 0.00 0.00 0.00 3.86
2240 2593 3.971245 AATCCTGACTCCTGAGTTCAC 57.029 47.619 0.63 0.00 42.66 3.18
2266 2619 4.567116 CCATCACCAATCCATAGATCCCTG 60.567 50.000 0.00 0.00 0.00 4.45
2310 2663 3.960755 CACCTTTCTTTCAGGGGAAAAGT 59.039 43.478 0.00 0.00 42.18 2.66
2348 2701 2.630889 AGAGGTGGAAGATGGTCTGA 57.369 50.000 0.00 0.00 0.00 3.27
2350 2703 3.458831 AGAGGTGGAAGATGGTCTGAAT 58.541 45.455 0.00 0.00 0.00 2.57
2387 2740 2.417933 CAGCTGCAGTTTCTTATCGCTT 59.582 45.455 16.64 0.00 0.00 4.68
2692 3045 4.655762 CCTTATCAGGTGATCTCGTTCA 57.344 45.455 0.00 0.00 35.06 3.18
2693 3046 5.011090 CCTTATCAGGTGATCTCGTTCAA 57.989 43.478 0.00 0.00 35.06 2.69
2721 3074 4.574674 TCTTCACTTATCCTGTTGCCAT 57.425 40.909 0.00 0.00 0.00 4.40
2842 3223 6.127758 CCGATGAATTTTATTGGTCCTGTTCA 60.128 38.462 0.20 0.00 0.00 3.18
2860 3241 2.360852 CAGCCTTGCAGTGAGGGG 60.361 66.667 5.09 0.00 34.75 4.79
2861 3242 2.856000 AGCCTTGCAGTGAGGGGT 60.856 61.111 5.09 0.00 34.75 4.95
2862 3243 2.674380 GCCTTGCAGTGAGGGGTG 60.674 66.667 5.09 0.00 34.75 4.61
2863 3244 3.160585 CCTTGCAGTGAGGGGTGA 58.839 61.111 0.00 0.00 0.00 4.02
2864 3245 1.002868 CCTTGCAGTGAGGGGTGAG 60.003 63.158 0.00 0.00 0.00 3.51
2865 3246 1.002868 CTTGCAGTGAGGGGTGAGG 60.003 63.158 0.00 0.00 0.00 3.86
2866 3247 2.475371 CTTGCAGTGAGGGGTGAGGG 62.475 65.000 0.00 0.00 0.00 4.30
2871 3252 1.689582 GTGAGGGGTGAGGGTAGGG 60.690 68.421 0.00 0.00 0.00 3.53
2888 3269 4.651045 GGTAGGGTTCCGGTAATCTTTCTA 59.349 45.833 0.00 0.00 0.00 2.10
2917 3298 0.321298 ATTGTGTACCGCTGACACCC 60.321 55.000 9.35 0.00 45.43 4.61
3023 3404 5.837437 TGGTTTTGTGCGAGTTATTCAAAT 58.163 33.333 0.00 0.00 0.00 2.32
3024 3405 6.276847 TGGTTTTGTGCGAGTTATTCAAATT 58.723 32.000 0.00 0.00 0.00 1.82
3025 3406 6.758886 TGGTTTTGTGCGAGTTATTCAAATTT 59.241 30.769 0.00 0.00 0.00 1.82
3184 3575 2.106566 GATCCTCTGCAGAAGGTCAGA 58.893 52.381 18.85 9.11 37.70 3.27
3203 3594 4.274950 TCAGAATTTGGGTGAAAAGTCGTC 59.725 41.667 0.00 0.00 38.74 4.20
3220 3611 4.404073 AGTCGTCTGATTTTGATAGAGCCT 59.596 41.667 0.00 0.00 0.00 4.58
3235 3626 7.164122 TGATAGAGCCTTCAATCATATGTTCC 58.836 38.462 1.90 0.00 0.00 3.62
3380 3771 3.407698 TGATGCGCTTTCAGAAGGTAAA 58.592 40.909 9.73 0.00 33.34 2.01
3416 3807 4.692625 GTCATAGCGATGTGAGCCAATTAT 59.307 41.667 0.00 0.00 34.41 1.28
3417 3808 5.869344 GTCATAGCGATGTGAGCCAATTATA 59.131 40.000 0.00 0.00 34.41 0.98
3458 3849 1.202330 AGGAGAATGGAGGTGAGCTG 58.798 55.000 0.00 0.00 0.00 4.24
3474 3865 2.475487 GAGCTGTTGTAGTTCGGTGAAC 59.525 50.000 0.00 1.49 42.25 3.18
3626 4017 0.255890 GCAGCCAGGGGTATCAAGAA 59.744 55.000 0.00 0.00 0.00 2.52
3771 4162 2.099756 GGCAGCATTACAGGTTTGGATC 59.900 50.000 0.00 0.00 0.00 3.36
3798 4189 7.179694 CCTCATGGATAATAAATCCCATTGCTT 59.820 37.037 1.70 0.00 37.30 3.91
4036 4428 4.295199 GCCTTTTGGACCCCGGGT 62.295 66.667 21.85 9.59 44.07 5.28
4055 4447 4.384208 CGGGTTTAGTGATCCTGGATTCTT 60.384 45.833 11.17 2.13 0.00 2.52
4068 4460 5.643777 TCCTGGATTCTTGAGAAATTCGAAC 59.356 40.000 0.00 0.00 37.61 3.95
4106 4498 8.915654 GGTGTTAAAATTTGTTGAAGATAGCAG 58.084 33.333 0.00 0.00 0.00 4.24
4120 4682 9.733556 TTGAAGATAGCAGACATTACCTTTTTA 57.266 29.630 0.00 0.00 0.00 1.52
4210 4772 1.222936 CCTGAGCTCCAAATCGCCT 59.777 57.895 12.15 0.00 0.00 5.52
4802 5688 0.391528 GGGGCATGGCAATTGTGAAC 60.392 55.000 22.06 0.00 0.00 3.18
4823 5709 4.359706 ACGTTTTCTGTGGCAAATTCTTC 58.640 39.130 0.00 0.00 0.00 2.87
4824 5710 4.142271 ACGTTTTCTGTGGCAAATTCTTCA 60.142 37.500 0.00 0.00 0.00 3.02
4894 5782 2.028748 AGGATTTTGCTGCGAAATTGCT 60.029 40.909 24.52 16.80 35.36 3.91
4949 5837 3.862267 CACAGAAATTGCCGTGAAAAACA 59.138 39.130 0.00 0.00 0.00 2.83
4952 5840 5.234116 ACAGAAATTGCCGTGAAAAACATTC 59.766 36.000 0.00 0.00 0.00 2.67
4971 5859 1.886253 CGTTTTGCCATGCATCCCCA 61.886 55.000 0.00 0.00 38.76 4.96
4978 5866 2.514592 ATGCATCCCCAGCGAACG 60.515 61.111 0.00 0.00 33.85 3.95
4980 5868 2.746277 GCATCCCCAGCGAACGTT 60.746 61.111 0.00 0.00 0.00 3.99
5074 5962 7.750229 TTTCTCTGCAAAGTGAAGTGATTAT 57.250 32.000 0.00 0.00 26.82 1.28
5452 6340 1.988467 GCCTTGAGAGAAAAATTGCGC 59.012 47.619 0.00 0.00 0.00 6.09
5472 6360 2.159462 GCAGCATGGCTCTCTTAAACAC 60.159 50.000 0.00 0.00 36.40 3.32
5504 6394 7.108841 TCATGTTACTCCTATGTTGTACTCC 57.891 40.000 0.00 0.00 0.00 3.85
5530 6423 3.062774 GGACTCAACTCTTAAATGAGCGC 59.937 47.826 0.00 0.00 43.41 5.92
5543 6436 9.716507 TCTTAAATGAGCGCTTATGAATAAAAC 57.283 29.630 16.16 0.00 0.00 2.43
5544 6437 9.502145 CTTAAATGAGCGCTTATGAATAAAACA 57.498 29.630 16.16 2.22 0.00 2.83
5590 6483 8.722480 TCTGGTTGTCTCTGTATTTTCATATG 57.278 34.615 0.00 0.00 0.00 1.78
5591 6484 7.280876 TCTGGTTGTCTCTGTATTTTCATATGC 59.719 37.037 0.00 0.00 0.00 3.14
5592 6485 7.112122 TGGTTGTCTCTGTATTTTCATATGCT 58.888 34.615 0.00 0.00 0.00 3.79
5593 6486 7.280876 TGGTTGTCTCTGTATTTTCATATGCTC 59.719 37.037 0.00 0.00 0.00 4.26
5594 6487 7.254932 GGTTGTCTCTGTATTTTCATATGCTCC 60.255 40.741 0.00 0.00 0.00 4.70
5595 6488 6.291377 TGTCTCTGTATTTTCATATGCTCCC 58.709 40.000 0.00 0.00 0.00 4.30
5596 6489 6.100279 TGTCTCTGTATTTTCATATGCTCCCT 59.900 38.462 0.00 0.00 0.00 4.20
5597 6490 6.648725 GTCTCTGTATTTTCATATGCTCCCTC 59.351 42.308 0.00 0.00 0.00 4.30
5598 6491 5.869579 TCTGTATTTTCATATGCTCCCTCC 58.130 41.667 0.00 0.00 0.00 4.30
5599 6492 4.641396 TGTATTTTCATATGCTCCCTCCG 58.359 43.478 0.00 0.00 0.00 4.63
5600 6493 1.967319 TTTTCATATGCTCCCTCCGC 58.033 50.000 0.00 0.00 0.00 5.54
5601 6494 1.131638 TTTCATATGCTCCCTCCGCT 58.868 50.000 0.00 0.00 0.00 5.52
5602 6495 1.131638 TTCATATGCTCCCTCCGCTT 58.868 50.000 0.00 0.00 0.00 4.68
5603 6496 0.681733 TCATATGCTCCCTCCGCTTC 59.318 55.000 0.00 0.00 0.00 3.86
5604 6497 0.683973 CATATGCTCCCTCCGCTTCT 59.316 55.000 0.00 0.00 0.00 2.85
5605 6498 1.895798 CATATGCTCCCTCCGCTTCTA 59.104 52.381 0.00 0.00 0.00 2.10
5606 6499 2.082140 TATGCTCCCTCCGCTTCTAA 57.918 50.000 0.00 0.00 0.00 2.10
5607 6500 1.204146 ATGCTCCCTCCGCTTCTAAA 58.796 50.000 0.00 0.00 0.00 1.85
5608 6501 1.204146 TGCTCCCTCCGCTTCTAAAT 58.796 50.000 0.00 0.00 0.00 1.40
5609 6502 2.394632 TGCTCCCTCCGCTTCTAAATA 58.605 47.619 0.00 0.00 0.00 1.40
5610 6503 2.972713 TGCTCCCTCCGCTTCTAAATAT 59.027 45.455 0.00 0.00 0.00 1.28
5611 6504 4.157246 TGCTCCCTCCGCTTCTAAATATA 58.843 43.478 0.00 0.00 0.00 0.86
5612 6505 4.591498 TGCTCCCTCCGCTTCTAAATATAA 59.409 41.667 0.00 0.00 0.00 0.98
5613 6506 5.172205 GCTCCCTCCGCTTCTAAATATAAG 58.828 45.833 0.00 0.00 0.00 1.73
5614 6507 5.047235 GCTCCCTCCGCTTCTAAATATAAGA 60.047 44.000 0.00 0.00 0.00 2.10
5615 6508 6.342338 TCCCTCCGCTTCTAAATATAAGAC 57.658 41.667 0.00 0.00 0.00 3.01
5616 6509 5.245526 TCCCTCCGCTTCTAAATATAAGACC 59.754 44.000 0.00 0.00 0.00 3.85
5617 6510 5.246429 CCCTCCGCTTCTAAATATAAGACCT 59.754 44.000 0.00 0.00 0.00 3.85
5618 6511 6.239629 CCCTCCGCTTCTAAATATAAGACCTT 60.240 42.308 0.00 0.00 0.00 3.50
5619 6512 7.217906 CCTCCGCTTCTAAATATAAGACCTTT 58.782 38.462 0.00 0.00 0.00 3.11
5620 6513 7.715686 CCTCCGCTTCTAAATATAAGACCTTTT 59.284 37.037 0.00 0.00 0.00 2.27
5621 6514 9.760077 CTCCGCTTCTAAATATAAGACCTTTTA 57.240 33.333 0.00 0.00 0.00 1.52
5622 6515 9.760077 TCCGCTTCTAAATATAAGACCTTTTAG 57.240 33.333 0.00 0.00 34.47 1.85
5623 6516 9.760077 CCGCTTCTAAATATAAGACCTTTTAGA 57.240 33.333 0.00 0.00 38.33 2.10
5635 6528 6.787085 AGACCTTTTAGAGATTTCAACACG 57.213 37.500 0.00 0.00 0.00 4.49
5636 6529 5.701290 AGACCTTTTAGAGATTTCAACACGG 59.299 40.000 0.00 0.00 0.00 4.94
5637 6530 5.617252 ACCTTTTAGAGATTTCAACACGGA 58.383 37.500 0.00 0.00 0.00 4.69
5638 6531 5.469084 ACCTTTTAGAGATTTCAACACGGAC 59.531 40.000 0.00 0.00 0.00 4.79
5639 6532 5.701290 CCTTTTAGAGATTTCAACACGGACT 59.299 40.000 0.00 0.00 0.00 3.85
5640 6533 6.872020 CCTTTTAGAGATTTCAACACGGACTA 59.128 38.462 0.00 0.00 0.00 2.59
5641 6534 7.148623 CCTTTTAGAGATTTCAACACGGACTAC 60.149 40.741 0.00 0.00 0.00 2.73
5642 6535 4.866508 AGAGATTTCAACACGGACTACA 57.133 40.909 0.00 0.00 0.00 2.74
5643 6536 5.407407 AGAGATTTCAACACGGACTACAT 57.593 39.130 0.00 0.00 0.00 2.29
5644 6537 6.525578 AGAGATTTCAACACGGACTACATA 57.474 37.500 0.00 0.00 0.00 2.29
5645 6538 6.331061 AGAGATTTCAACACGGACTACATAC 58.669 40.000 0.00 0.00 0.00 2.39
5646 6539 5.100259 AGATTTCAACACGGACTACATACG 58.900 41.667 0.00 0.00 0.00 3.06
5647 6540 2.925578 TCAACACGGACTACATACGG 57.074 50.000 0.00 0.00 0.00 4.02
5648 6541 2.435422 TCAACACGGACTACATACGGA 58.565 47.619 0.00 0.00 0.00 4.69
5649 6542 3.018856 TCAACACGGACTACATACGGAT 58.981 45.455 0.00 0.00 0.00 4.18
5650 6543 3.113322 CAACACGGACTACATACGGATG 58.887 50.000 5.94 5.94 39.16 3.51
5652 6545 3.544684 ACACGGACTACATACGGATGTA 58.455 45.455 19.32 19.32 44.77 2.29
5653 6546 4.139786 ACACGGACTACATACGGATGTAT 58.860 43.478 20.64 11.04 45.42 2.29
5654 6547 5.308014 ACACGGACTACATACGGATGTATA 58.692 41.667 20.64 1.71 45.42 1.47
5655 6548 5.942236 ACACGGACTACATACGGATGTATAT 59.058 40.000 20.64 12.15 45.42 0.86
5656 6549 7.105588 ACACGGACTACATACGGATGTATATA 58.894 38.462 20.64 0.52 45.42 0.86
5657 6550 7.279536 ACACGGACTACATACGGATGTATATAG 59.720 40.741 20.64 13.28 45.42 1.31
5658 6551 7.493645 CACGGACTACATACGGATGTATATAGA 59.506 40.741 20.64 0.00 45.42 1.98
5659 6552 7.493971 ACGGACTACATACGGATGTATATAGAC 59.506 40.741 20.64 10.95 45.42 2.59
5660 6553 7.493645 CGGACTACATACGGATGTATATAGACA 59.506 40.741 20.64 2.07 45.42 3.41
5661 6554 9.339850 GGACTACATACGGATGTATATAGACAT 57.660 37.037 20.64 12.70 45.42 3.06
5693 6586 7.559590 AGTGTATATTCACTCATTTTGCTCC 57.440 36.000 9.03 0.00 44.07 4.70
5694 6587 6.258727 AGTGTATATTCACTCATTTTGCTCCG 59.741 38.462 9.03 0.00 44.07 4.63
5695 6588 6.037172 GTGTATATTCACTCATTTTGCTCCGT 59.963 38.462 5.30 0.00 35.68 4.69
5696 6589 7.223971 GTGTATATTCACTCATTTTGCTCCGTA 59.776 37.037 5.30 0.00 35.68 4.02
5697 6590 7.931407 TGTATATTCACTCATTTTGCTCCGTAT 59.069 33.333 0.00 0.00 0.00 3.06
5698 6591 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
5699 6592 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
5700 6593 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
5701 6594 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
5702 6595 5.105513 TCACTCATTTTGCTCCGTATGTAGA 60.106 40.000 0.00 0.00 0.00 2.59
5703 6596 5.005779 CACTCATTTTGCTCCGTATGTAGAC 59.994 44.000 0.00 0.00 0.00 2.59
5704 6597 4.439057 TCATTTTGCTCCGTATGTAGACC 58.561 43.478 0.00 0.00 0.00 3.85
5705 6598 2.572191 TTTGCTCCGTATGTAGACCG 57.428 50.000 0.00 0.00 0.00 4.79
5706 6599 1.466856 TTGCTCCGTATGTAGACCGT 58.533 50.000 0.00 0.00 0.00 4.83
5707 6600 2.330440 TGCTCCGTATGTAGACCGTA 57.670 50.000 0.00 0.00 0.00 4.02
5708 6601 2.854963 TGCTCCGTATGTAGACCGTAT 58.145 47.619 0.00 0.00 0.00 3.06
5709 6602 3.216800 TGCTCCGTATGTAGACCGTATT 58.783 45.455 0.00 0.00 0.00 1.89
5710 6603 3.004002 TGCTCCGTATGTAGACCGTATTG 59.996 47.826 0.00 0.00 0.00 1.90
5711 6604 3.611057 GCTCCGTATGTAGACCGTATTGG 60.611 52.174 0.00 0.00 46.41 3.16
5712 6605 3.817084 CTCCGTATGTAGACCGTATTGGA 59.183 47.826 0.00 0.00 42.00 3.53
5713 6606 4.206375 TCCGTATGTAGACCGTATTGGAA 58.794 43.478 0.00 0.00 42.00 3.53
5714 6607 4.828939 TCCGTATGTAGACCGTATTGGAAT 59.171 41.667 0.00 0.00 42.00 3.01
5715 6608 5.048504 TCCGTATGTAGACCGTATTGGAATC 60.049 44.000 0.00 0.00 42.00 2.52
5716 6609 5.048224 CCGTATGTAGACCGTATTGGAATCT 60.048 44.000 0.00 0.00 42.00 2.40
5717 6610 6.084925 CGTATGTAGACCGTATTGGAATCTC 58.915 44.000 0.00 0.00 42.00 2.75
5718 6611 6.072618 CGTATGTAGACCGTATTGGAATCTCT 60.073 42.308 0.00 0.00 42.00 3.10
5719 6612 7.118825 CGTATGTAGACCGTATTGGAATCTCTA 59.881 40.741 0.00 0.00 42.00 2.43
5720 6613 7.834881 ATGTAGACCGTATTGGAATCTCTAA 57.165 36.000 0.00 0.00 42.00 2.10
5721 6614 7.649533 TGTAGACCGTATTGGAATCTCTAAA 57.350 36.000 0.00 0.00 42.00 1.85
5722 6615 8.070034 TGTAGACCGTATTGGAATCTCTAAAA 57.930 34.615 0.00 0.00 42.00 1.52
5723 6616 8.195436 TGTAGACCGTATTGGAATCTCTAAAAG 58.805 37.037 0.00 0.00 42.00 2.27
5724 6617 6.583562 AGACCGTATTGGAATCTCTAAAAGG 58.416 40.000 0.00 0.00 42.00 3.11
5725 6618 6.383147 AGACCGTATTGGAATCTCTAAAAGGA 59.617 38.462 0.00 0.00 42.00 3.36
5726 6619 6.346896 ACCGTATTGGAATCTCTAAAAGGAC 58.653 40.000 0.00 0.00 42.00 3.85
5727 6620 6.156429 ACCGTATTGGAATCTCTAAAAGGACT 59.844 38.462 0.00 0.00 42.00 3.85
5728 6621 7.048512 CCGTATTGGAATCTCTAAAAGGACTT 58.951 38.462 0.00 0.00 42.00 3.01
5729 6622 8.202137 CCGTATTGGAATCTCTAAAAGGACTTA 58.798 37.037 0.00 0.00 42.00 2.24
5730 6623 9.765795 CGTATTGGAATCTCTAAAAGGACTTAT 57.234 33.333 0.00 0.00 0.00 1.73
5744 6637 8.959705 AAAAGGACTTATATTTAGGAACGGAG 57.040 34.615 0.00 0.00 0.00 4.63
5745 6638 6.667558 AGGACTTATATTTAGGAACGGAGG 57.332 41.667 0.00 0.00 0.00 4.30
5746 6639 5.543020 AGGACTTATATTTAGGAACGGAGGG 59.457 44.000 0.00 0.00 0.00 4.30
5777 6670 7.625828 AATTTATGTGCTTTAGTAGTGGTCC 57.374 36.000 0.00 0.00 0.00 4.46
6047 6956 8.703604 TTTCTCATATTGTAGACTACTTGTGC 57.296 34.615 13.67 0.00 0.00 4.57
6059 6968 5.578727 AGACTACTTGTGCGAATCTGATTTC 59.421 40.000 4.11 1.05 0.00 2.17
6099 7008 0.888736 TGCTTGTCCGTGTCCATTGG 60.889 55.000 0.00 0.00 0.00 3.16
6129 7038 7.751732 TGATGCAGTAGCTTTTGTAAACATAG 58.248 34.615 0.00 0.00 42.74 2.23
6150 7062 8.567948 ACATAGCGGAGAAATAAATACATTTGG 58.432 33.333 0.00 0.00 0.00 3.28
6177 7089 5.757808 ACAATATTCCACACCTTTGTTTTGC 59.242 36.000 0.00 0.00 31.66 3.68
6202 7114 9.190858 GCAAGTTATTCATTGTAAAATGTGTGA 57.809 29.630 5.52 0.00 0.00 3.58
6293 7210 0.725784 CAACGAAATGCTGCACGGTC 60.726 55.000 3.57 1.50 0.00 4.79
6322 7239 2.301346 GGGGCACATCTACCTGAATTG 58.699 52.381 0.00 0.00 0.00 2.32
6443 7360 7.341256 AGGAGATAACAAATGCATTCTGTCAAT 59.659 33.333 13.38 14.40 0.00 2.57
6480 7397 7.458409 AGATAACAAATGCACACAAAGAGAT 57.542 32.000 0.00 0.00 0.00 2.75
6481 7398 8.565896 AGATAACAAATGCACACAAAGAGATA 57.434 30.769 0.00 0.00 0.00 1.98
6482 7399 8.454106 AGATAACAAATGCACACAAAGAGATAC 58.546 33.333 0.00 0.00 0.00 2.24
6514 7431 2.678471 ATTTGGTATGCCTTTGCTGC 57.322 45.000 0.16 0.00 38.71 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 0.806102 CGTCATTGGTCGGAAGCGAT 60.806 55.000 0.00 0.00 0.00 4.58
77 78 2.125952 TGCGGCGAGTCTGTCATG 60.126 61.111 12.98 0.00 0.00 3.07
102 103 3.750130 CAGAAATCCTGAACTCCACACAG 59.250 47.826 0.00 0.00 45.78 3.66
104 105 3.077359 CCAGAAATCCTGAACTCCACAC 58.923 50.000 0.00 0.00 45.78 3.82
115 116 0.108615 CGAGTGACGCCAGAAATCCT 60.109 55.000 0.00 0.00 34.51 3.24
155 156 0.824109 TAAGATCCCACACGCTCCTG 59.176 55.000 0.00 0.00 0.00 3.86
169 170 8.991783 ATGTGTGATTTCCTCATCAATAAGAT 57.008 30.769 0.00 0.00 34.89 2.40
219 220 4.317980 CGTAAACAACCATTGCTTTGCTTG 60.318 41.667 0.00 0.00 0.00 4.01
280 281 1.656818 GGACCACAATGCCACCGATG 61.657 60.000 0.00 0.00 0.00 3.84
293 294 1.153784 CGCATGCCAAATGGACCAC 60.154 57.895 13.15 0.00 37.39 4.16
416 417 4.497291 AACACTCCTTACCACAGTTTGA 57.503 40.909 0.00 0.00 0.00 2.69
444 445 3.936203 TCGGGTGTGTGCCTGTCC 61.936 66.667 0.00 0.00 36.33 4.02
445 446 2.665185 GTCGGGTGTGTGCCTGTC 60.665 66.667 0.00 0.00 36.33 3.51
458 459 4.462280 GGTGGCTTACGGGGTCGG 62.462 72.222 0.00 0.00 41.39 4.79
487 488 3.008594 TCCACCGTCTACATGGATTTTGT 59.991 43.478 0.00 0.00 37.60 2.83
494 495 0.460284 GCACTCCACCGTCTACATGG 60.460 60.000 0.00 0.00 34.58 3.66
500 501 1.407656 TTCCAAGCACTCCACCGTCT 61.408 55.000 0.00 0.00 0.00 4.18
506 507 1.455849 CCTGGTTCCAAGCACTCCA 59.544 57.895 0.00 0.00 32.29 3.86
512 513 2.283173 CCACCCCTGGTTCCAAGC 60.283 66.667 0.00 0.00 31.02 4.01
515 516 2.856988 GACCCACCCCTGGTTCCA 60.857 66.667 0.00 0.00 35.85 3.53
530 531 0.595567 TACATATCGTTGCCGCCGAC 60.596 55.000 0.00 0.00 37.12 4.79
540 541 9.035607 GTTTTCATGTTCATCTCTACATATCGT 57.964 33.333 0.00 0.00 33.42 3.73
562 563 7.439108 AGAGTTGAGCTACCCATATAGTTTT 57.561 36.000 0.00 0.00 0.00 2.43
609 610 5.365822 GCCATTGCTTCCAAAGTTGGTGA 62.366 47.826 9.85 0.25 41.01 4.02
632 633 0.034670 GAGCCAAGGCCTCTCAACAT 60.035 55.000 5.23 0.00 43.17 2.71
636 637 1.333636 GCTAGAGCCAAGGCCTCTCA 61.334 60.000 19.24 7.14 43.17 3.27
644 645 1.830477 AGGTCTTCTGCTAGAGCCAAG 59.170 52.381 0.00 1.90 42.25 3.61
667 668 3.205338 GCAACCACAAAGCTTTGGATTT 58.795 40.909 35.65 23.73 42.34 2.17
686 687 0.674581 CTTGCTGACAATCGGAGGCA 60.675 55.000 0.00 0.00 34.61 4.75
695 696 1.762370 TCTGAGACCACTTGCTGACAA 59.238 47.619 0.00 0.00 0.00 3.18
701 702 4.507710 TGTTGATATCTGAGACCACTTGC 58.492 43.478 3.98 0.00 0.00 4.01
716 717 4.776435 TCATCTTGCTCCCATGTTGATA 57.224 40.909 0.00 0.00 0.00 2.15
723 724 4.166725 TCCATAAGTTCATCTTGCTCCCAT 59.833 41.667 0.00 0.00 37.56 4.00
725 726 4.133078 CTCCATAAGTTCATCTTGCTCCC 58.867 47.826 0.00 0.00 37.56 4.30
856 857 2.637383 GGCGACCTGGTCTTCTCGT 61.637 63.158 23.49 0.00 0.00 4.18
862 863 1.681327 ATACGTGGCGACCTGGTCT 60.681 57.895 23.49 7.22 0.00 3.85
957 958 7.708752 GTGCAAGTGCTAAGATAGTCTTATCTT 59.291 37.037 12.78 12.78 45.80 2.40
958 959 7.206687 GTGCAAGTGCTAAGATAGTCTTATCT 58.793 38.462 4.69 0.00 43.51 1.98
959 960 6.143118 CGTGCAAGTGCTAAGATAGTCTTATC 59.857 42.308 4.69 0.00 38.20 1.75
960 961 5.980116 CGTGCAAGTGCTAAGATAGTCTTAT 59.020 40.000 4.69 0.00 38.20 1.73
961 962 5.340803 CGTGCAAGTGCTAAGATAGTCTTA 58.659 41.667 4.69 0.09 42.66 2.10
962 963 4.177026 CGTGCAAGTGCTAAGATAGTCTT 58.823 43.478 4.69 0.00 42.66 3.01
963 964 3.429547 CCGTGCAAGTGCTAAGATAGTCT 60.430 47.826 4.69 0.00 42.66 3.24
964 965 2.860735 CCGTGCAAGTGCTAAGATAGTC 59.139 50.000 4.69 0.00 42.66 2.59
965 966 2.233922 ACCGTGCAAGTGCTAAGATAGT 59.766 45.455 4.69 0.00 42.66 2.12
966 967 2.893637 ACCGTGCAAGTGCTAAGATAG 58.106 47.619 4.69 0.00 42.66 2.08
967 968 3.000041 CAACCGTGCAAGTGCTAAGATA 59.000 45.455 4.69 0.00 42.66 1.98
968 969 1.806542 CAACCGTGCAAGTGCTAAGAT 59.193 47.619 4.69 0.00 42.66 2.40
969 970 1.225855 CAACCGTGCAAGTGCTAAGA 58.774 50.000 4.69 0.00 42.66 2.10
970 971 0.944386 ACAACCGTGCAAGTGCTAAG 59.056 50.000 4.69 0.00 42.66 2.18
971 972 1.064803 CAACAACCGTGCAAGTGCTAA 59.935 47.619 4.69 0.00 42.66 3.09
972 973 0.660488 CAACAACCGTGCAAGTGCTA 59.340 50.000 4.69 0.00 42.66 3.49
1026 1027 1.810030 CGTTCTTAGTCGGGGCTGC 60.810 63.158 0.00 0.00 0.00 5.25
1031 1032 2.202703 CGGCCGTTCTTAGTCGGG 60.203 66.667 19.50 1.99 45.85 5.14
1086 1087 0.909623 TGCCCTAGCTTGGTAGAACC 59.090 55.000 13.38 0.00 40.80 3.62
1226 1250 3.380671 CGTCGACGGGGAAATTCG 58.619 61.111 29.70 0.00 35.37 3.34
1240 1264 1.337110 GCTCAAAATTGCACGCCGTC 61.337 55.000 0.00 0.00 0.00 4.79
1245 1269 3.266541 TGTACTGCTCAAAATTGCACG 57.733 42.857 0.00 0.00 35.20 5.34
1264 1288 2.055310 TAGGTCGGAGCGCGTGTATG 62.055 60.000 8.43 0.00 0.00 2.39
1270 1294 1.712977 AACTACTAGGTCGGAGCGCG 61.713 60.000 0.00 0.00 0.00 6.86
1272 1296 0.248539 GCAACTACTAGGTCGGAGCG 60.249 60.000 0.96 0.00 0.00 5.03
1286 1310 1.271054 ACATCAGGAAAGCTCGCAACT 60.271 47.619 0.00 0.00 0.00 3.16
1287 1311 1.160137 ACATCAGGAAAGCTCGCAAC 58.840 50.000 0.00 0.00 0.00 4.17
1288 1312 1.896220 AACATCAGGAAAGCTCGCAA 58.104 45.000 0.00 0.00 0.00 4.85
1296 1320 3.571828 TGGCGAAATCAAACATCAGGAAA 59.428 39.130 0.00 0.00 0.00 3.13
1300 1324 2.855963 GCATGGCGAAATCAAACATCAG 59.144 45.455 0.00 0.00 0.00 2.90
1333 1357 1.081892 CTGAATCAGCAACGGGAGTG 58.918 55.000 0.00 0.00 46.69 3.51
1434 1458 3.265791 CCACAGGCAGAATGAACTACTC 58.734 50.000 0.00 0.00 39.69 2.59
1495 1522 1.406069 CCGAATCCACAACCAGGAGAG 60.406 57.143 0.00 0.00 38.83 3.20
1568 1603 3.091545 CAGAATTTTAGGAAGGCCAGCA 58.908 45.455 5.01 0.00 36.29 4.41
1614 1649 2.504996 CTCCAGAAAGAGGAGCTTGGAT 59.495 50.000 0.11 0.00 45.51 3.41
1629 1664 1.131638 ACAGTGGTTGCTTCTCCAGA 58.868 50.000 0.00 0.00 34.16 3.86
1660 1695 4.455877 GGTGCAAGTGATAGCTTACAGTTT 59.544 41.667 0.00 0.00 0.00 2.66
1665 1700 4.672801 GCTTTGGTGCAAGTGATAGCTTAC 60.673 45.833 0.00 0.00 0.00 2.34
1669 1704 1.815003 AGCTTTGGTGCAAGTGATAGC 59.185 47.619 0.00 0.00 34.99 2.97
1755 1952 6.089502 AGGGGATTTCTCCGTATAATTAGGT 58.910 40.000 0.00 0.00 43.11 3.08
1768 1965 3.356529 TTTGAGCTGAGGGGATTTCTC 57.643 47.619 0.00 0.00 0.00 2.87
1769 1966 4.021916 CAATTTGAGCTGAGGGGATTTCT 58.978 43.478 0.00 0.00 0.00 2.52
1777 1974 4.174009 CTGCAATTCAATTTGAGCTGAGG 58.826 43.478 11.81 2.93 0.00 3.86
1797 1994 6.600350 CAGCATTTTATCGAGAATCATCCTG 58.400 40.000 0.00 0.00 33.17 3.86
1809 2006 4.847757 CCATACGAATGCAGCATTTTATCG 59.152 41.667 21.73 21.12 33.90 2.92
1816 2013 1.134128 TGTCCCATACGAATGCAGCAT 60.134 47.619 0.52 0.52 0.00 3.79
1819 2016 2.355197 TGTTGTCCCATACGAATGCAG 58.645 47.619 0.00 0.00 0.00 4.41
1828 2025 6.432581 ACTAGTGACTCTATGTTGTCCCATA 58.567 40.000 0.00 0.00 32.67 2.74
1829 2026 5.273208 ACTAGTGACTCTATGTTGTCCCAT 58.727 41.667 0.00 0.00 32.67 4.00
1830 2027 4.673968 ACTAGTGACTCTATGTTGTCCCA 58.326 43.478 0.00 0.00 32.67 4.37
1837 2034 9.682465 TGAATTGTAGTACTAGTGACTCTATGT 57.318 33.333 5.39 0.00 0.00 2.29
1854 2051 5.576774 TGTGAGCTCGTGTTATGAATTGTAG 59.423 40.000 9.64 0.00 0.00 2.74
1869 2066 6.591261 CATTATGATCTGATTTGTGAGCTCG 58.409 40.000 9.64 0.00 0.00 5.03
1887 2084 7.551617 TGTTATGCTCTATCCATCTGCATTATG 59.448 37.037 4.12 0.00 43.09 1.90
1890 2087 5.872963 TGTTATGCTCTATCCATCTGCATT 58.127 37.500 4.12 0.00 43.09 3.56
1950 2153 4.460263 ACCATAGGCTGCGATATTTTTCA 58.540 39.130 0.00 0.00 0.00 2.69
1952 2155 7.370383 CAAATACCATAGGCTGCGATATTTTT 58.630 34.615 0.00 0.00 0.00 1.94
1985 2188 6.690098 GTGTAGATGATGTGCAAAATTAGCAG 59.310 38.462 5.80 0.00 43.63 4.24
2019 2222 6.573664 AAACCATGTTGAAATCGATTCTCA 57.426 33.333 11.83 13.74 38.92 3.27
2228 2581 1.625315 TGATGGTGGTGAACTCAGGAG 59.375 52.381 0.00 0.00 0.00 3.69
2229 2582 1.347707 GTGATGGTGGTGAACTCAGGA 59.652 52.381 0.00 0.00 0.00 3.86
2230 2583 1.611673 GGTGATGGTGGTGAACTCAGG 60.612 57.143 0.00 0.00 0.00 3.86
2231 2584 1.072173 TGGTGATGGTGGTGAACTCAG 59.928 52.381 0.00 0.00 0.00 3.35
2232 2585 1.135960 TGGTGATGGTGGTGAACTCA 58.864 50.000 0.00 0.00 0.00 3.41
2233 2586 2.270352 TTGGTGATGGTGGTGAACTC 57.730 50.000 0.00 0.00 0.00 3.01
2234 2587 2.555227 GGATTGGTGATGGTGGTGAACT 60.555 50.000 0.00 0.00 0.00 3.01
2240 2593 3.862877 TCTATGGATTGGTGATGGTGG 57.137 47.619 0.00 0.00 0.00 4.61
2266 2619 1.302271 GTTCGGAACCCTGGGTGAC 60.302 63.158 21.38 16.28 35.34 3.67
2276 2629 2.779506 AGAAAGGTGATGGTTCGGAAC 58.220 47.619 12.41 12.41 0.00 3.62
2279 2632 3.146066 TGAAAGAAAGGTGATGGTTCGG 58.854 45.455 0.00 0.00 0.00 4.30
2310 2663 4.326826 CTCTTACCAGTTGATTGCAGGAA 58.673 43.478 0.00 0.00 0.00 3.36
2348 2701 0.251121 TGAACCACCACCGCATCATT 60.251 50.000 0.00 0.00 0.00 2.57
2350 2703 1.302431 CTGAACCACCACCGCATCA 60.302 57.895 0.00 0.00 0.00 3.07
2674 3027 4.261614 CCGATTGAACGAGATCACCTGATA 60.262 45.833 0.00 0.00 33.20 2.15
2679 3032 2.579207 TCCGATTGAACGAGATCACC 57.421 50.000 0.00 0.00 35.09 4.02
2689 3042 6.763135 CAGGATAAGTGAAGAATCCGATTGAA 59.237 38.462 0.00 0.00 43.33 2.69
2692 3045 6.240549 ACAGGATAAGTGAAGAATCCGATT 57.759 37.500 0.00 0.00 43.33 3.34
2693 3046 5.878406 ACAGGATAAGTGAAGAATCCGAT 57.122 39.130 0.00 0.00 43.33 4.18
2721 3074 2.562738 TCGATGCTTCCTCTCACTTTGA 59.437 45.455 0.00 0.00 0.00 2.69
2787 3141 0.900647 ACAAGAGGGAGAGTGGGACG 60.901 60.000 0.00 0.00 0.00 4.79
2842 3223 2.433446 CCCTCACTGCAAGGCTGT 59.567 61.111 0.00 0.00 41.16 4.40
2860 3241 0.324645 TACCGGAACCCTACCCTCAC 60.325 60.000 9.46 0.00 0.00 3.51
2861 3242 0.413037 TTACCGGAACCCTACCCTCA 59.587 55.000 9.46 0.00 0.00 3.86
2862 3243 1.690893 GATTACCGGAACCCTACCCTC 59.309 57.143 9.46 0.00 0.00 4.30
2863 3244 1.293153 AGATTACCGGAACCCTACCCT 59.707 52.381 9.46 0.00 0.00 4.34
2864 3245 1.798626 AGATTACCGGAACCCTACCC 58.201 55.000 9.46 0.00 0.00 3.69
2865 3246 3.453717 AGAAAGATTACCGGAACCCTACC 59.546 47.826 9.46 0.00 0.00 3.18
2866 3247 4.750021 AGAAAGATTACCGGAACCCTAC 57.250 45.455 9.46 0.00 0.00 3.18
2871 3252 7.287512 AGATACCTAGAAAGATTACCGGAAC 57.712 40.000 9.46 0.00 0.00 3.62
2888 3269 3.451178 AGCGGTACACAATGAAGATACCT 59.549 43.478 0.00 0.00 34.34 3.08
2917 3298 4.096231 TGACGCCCAAATCATCAACAATAG 59.904 41.667 0.00 0.00 0.00 1.73
2982 3363 8.434392 ACAAAACCAACTAATAGGACTAACTGA 58.566 33.333 0.00 0.00 0.00 3.41
3184 3575 4.204012 TCAGACGACTTTTCACCCAAATT 58.796 39.130 0.00 0.00 0.00 1.82
3203 3594 7.563888 TGATTGAAGGCTCTATCAAAATCAG 57.436 36.000 4.36 0.00 39.75 2.90
3220 3611 4.512484 TCAGCACGGAACATATGATTGAA 58.488 39.130 10.38 0.00 0.00 2.69
3235 3626 0.950836 TTTTCCACACCATCAGCACG 59.049 50.000 0.00 0.00 0.00 5.34
3302 3693 4.450419 CGCATTTCTTCAGAGACTTCAACT 59.550 41.667 0.00 0.00 0.00 3.16
3380 3771 8.559536 CACATCGCTATGACAATAATTAAACCT 58.440 33.333 5.05 0.00 36.54 3.50
3400 3791 6.851222 AAAGACTATAATTGGCTCACATCG 57.149 37.500 0.00 0.00 0.00 3.84
3458 3849 2.546789 CCAAGGTTCACCGAACTACAAC 59.453 50.000 6.80 0.00 41.70 3.32
3474 3865 2.039084 AGGAGCACTTTCAGTACCAAGG 59.961 50.000 0.00 0.00 0.00 3.61
3771 4162 6.127253 GCAATGGGATTTATTATCCATGAGGG 60.127 42.308 6.18 0.00 39.66 4.30
3798 4189 7.512130 ACTTGATTGTGAGCATATCTATGGAA 58.488 34.615 0.00 0.00 34.32 3.53
4036 4428 6.874278 TCTCAAGAATCCAGGATCACTAAA 57.126 37.500 1.11 0.00 0.00 1.85
4055 4447 9.624697 CCTCAAAATTTATGTTCGAATTTCTCA 57.375 29.630 0.00 0.00 35.14 3.27
4106 4498 8.089597 TCCCGGAAATTTTAAAAAGGTAATGTC 58.910 33.333 0.73 0.00 0.00 3.06
4120 4682 3.019564 CTCTGCTGATCCCGGAAATTTT 58.980 45.455 0.73 0.00 0.00 1.82
4210 4772 5.482526 TGGTAGGCTATGTTAACAAGAGTGA 59.517 40.000 13.23 0.93 0.00 3.41
4411 4975 1.680522 CCTCCTCAGCATGCCTACGT 61.681 60.000 15.66 0.00 34.76 3.57
4479 5043 7.581213 ATGATAACACTTGGAAACACAAAGA 57.419 32.000 0.00 0.00 42.67 2.52
4723 5609 3.504863 TGTGTATACTTCCTTCGAACGC 58.495 45.455 4.17 0.00 0.00 4.84
4763 5649 4.438346 AGCGAACGTTTGCTGTCT 57.562 50.000 36.24 17.03 45.91 3.41
4802 5688 4.358851 TGAAGAATTTGCCACAGAAAACG 58.641 39.130 0.00 0.00 0.00 3.60
4823 5709 3.034721 ACAAATTGCCATGTGCTTCTG 57.965 42.857 7.54 3.45 42.00 3.02
4824 5710 3.069872 TGAACAAATTGCCATGTGCTTCT 59.930 39.130 7.54 0.00 42.00 2.85
4870 5756 2.704725 TTTCGCAGCAAAATCCTGTC 57.295 45.000 0.00 0.00 32.93 3.51
4894 5782 2.223249 GCAGTTCTTTCAAGCGAACACA 60.223 45.455 0.00 0.00 41.40 3.72
4949 5837 1.134729 GGGATGCATGGCAAAACGAAT 60.135 47.619 2.46 0.00 43.62 3.34
4952 5840 1.153588 GGGGATGCATGGCAAAACG 60.154 57.895 2.46 0.00 43.62 3.60
4960 5848 2.827051 CGTTCGCTGGGGATGCATG 61.827 63.158 2.46 0.00 0.00 4.06
4978 5866 5.751243 ATGGGTAATGTTATTCAGCGAAC 57.249 39.130 0.00 0.00 0.00 3.95
4980 5868 8.458573 AAAATATGGGTAATGTTATTCAGCGA 57.541 30.769 0.00 0.00 0.00 4.93
5452 6340 3.126514 CAGTGTTTAAGAGAGCCATGCTG 59.873 47.826 0.00 0.00 39.88 4.41
5465 6353 7.764443 GGAGTAACATGATAGCTCAGTGTTTAA 59.236 37.037 0.00 0.00 36.01 1.52
5472 6360 7.225784 ACATAGGAGTAACATGATAGCTCAG 57.774 40.000 0.00 0.00 34.12 3.35
5504 6394 6.199908 CGCTCATTTAAGAGTTGAGTCCATAG 59.800 42.308 0.00 0.00 39.24 2.23
5544 6437 4.225942 AGAATGTCCACACATGTAGGTCAT 59.774 41.667 17.51 17.51 42.89 3.06
5562 6455 7.439157 TGAAAATACAGAGACAACCAGAATG 57.561 36.000 0.00 0.00 0.00 2.67
5590 6483 3.686916 ATATTTAGAAGCGGAGGGAGC 57.313 47.619 0.00 0.00 0.00 4.70
5591 6484 6.391537 GTCTTATATTTAGAAGCGGAGGGAG 58.608 44.000 0.00 0.00 0.00 4.30
5592 6485 5.245526 GGTCTTATATTTAGAAGCGGAGGGA 59.754 44.000 0.00 0.00 0.00 4.20
5593 6486 5.246429 AGGTCTTATATTTAGAAGCGGAGGG 59.754 44.000 0.00 0.00 0.00 4.30
5594 6487 6.347859 AGGTCTTATATTTAGAAGCGGAGG 57.652 41.667 0.00 0.00 0.00 4.30
5595 6488 8.664211 AAAAGGTCTTATATTTAGAAGCGGAG 57.336 34.615 0.00 0.00 0.00 4.63
5596 6489 9.760077 CTAAAAGGTCTTATATTTAGAAGCGGA 57.240 33.333 0.00 0.00 37.48 5.54
5597 6490 9.760077 TCTAAAAGGTCTTATATTTAGAAGCGG 57.240 33.333 4.78 0.00 39.89 5.52
5609 6502 8.936864 CGTGTTGAAATCTCTAAAAGGTCTTAT 58.063 33.333 0.00 0.00 0.00 1.73
5610 6503 7.386848 CCGTGTTGAAATCTCTAAAAGGTCTTA 59.613 37.037 0.00 0.00 0.00 2.10
5611 6504 6.204882 CCGTGTTGAAATCTCTAAAAGGTCTT 59.795 38.462 0.00 0.00 0.00 3.01
5612 6505 5.701290 CCGTGTTGAAATCTCTAAAAGGTCT 59.299 40.000 0.00 0.00 0.00 3.85
5613 6506 5.699458 TCCGTGTTGAAATCTCTAAAAGGTC 59.301 40.000 0.00 0.00 0.00 3.85
5614 6507 5.469084 GTCCGTGTTGAAATCTCTAAAAGGT 59.531 40.000 0.00 0.00 0.00 3.50
5615 6508 5.701290 AGTCCGTGTTGAAATCTCTAAAAGG 59.299 40.000 0.00 0.00 0.00 3.11
5616 6509 6.787085 AGTCCGTGTTGAAATCTCTAAAAG 57.213 37.500 0.00 0.00 0.00 2.27
5617 6510 7.211573 TGTAGTCCGTGTTGAAATCTCTAAAA 58.788 34.615 0.00 0.00 0.00 1.52
5618 6511 6.751157 TGTAGTCCGTGTTGAAATCTCTAAA 58.249 36.000 0.00 0.00 0.00 1.85
5619 6512 6.335471 TGTAGTCCGTGTTGAAATCTCTAA 57.665 37.500 0.00 0.00 0.00 2.10
5620 6513 5.970317 TGTAGTCCGTGTTGAAATCTCTA 57.030 39.130 0.00 0.00 0.00 2.43
5621 6514 4.866508 TGTAGTCCGTGTTGAAATCTCT 57.133 40.909 0.00 0.00 0.00 3.10
5622 6515 5.229469 CGTATGTAGTCCGTGTTGAAATCTC 59.771 44.000 0.00 0.00 0.00 2.75
5623 6516 5.100259 CGTATGTAGTCCGTGTTGAAATCT 58.900 41.667 0.00 0.00 0.00 2.40
5624 6517 4.266976 CCGTATGTAGTCCGTGTTGAAATC 59.733 45.833 0.00 0.00 0.00 2.17
5625 6518 4.082081 TCCGTATGTAGTCCGTGTTGAAAT 60.082 41.667 0.00 0.00 0.00 2.17
5626 6519 3.255395 TCCGTATGTAGTCCGTGTTGAAA 59.745 43.478 0.00 0.00 0.00 2.69
5627 6520 2.819019 TCCGTATGTAGTCCGTGTTGAA 59.181 45.455 0.00 0.00 0.00 2.69
5628 6521 2.435422 TCCGTATGTAGTCCGTGTTGA 58.565 47.619 0.00 0.00 0.00 3.18
5629 6522 2.925578 TCCGTATGTAGTCCGTGTTG 57.074 50.000 0.00 0.00 0.00 3.33
5630 6523 2.756760 ACATCCGTATGTAGTCCGTGTT 59.243 45.455 0.00 0.00 44.66 3.32
5631 6524 2.372264 ACATCCGTATGTAGTCCGTGT 58.628 47.619 0.00 0.00 44.66 4.49
5670 6563 6.037172 ACGGAGCAAAATGAGTGAATATACAC 59.963 38.462 0.00 0.00 40.60 2.90
5671 6564 6.112734 ACGGAGCAAAATGAGTGAATATACA 58.887 36.000 0.00 0.00 0.00 2.29
5672 6565 6.604735 ACGGAGCAAAATGAGTGAATATAC 57.395 37.500 0.00 0.00 0.00 1.47
5673 6566 7.931407 ACATACGGAGCAAAATGAGTGAATATA 59.069 33.333 0.00 0.00 0.00 0.86
5674 6567 6.767902 ACATACGGAGCAAAATGAGTGAATAT 59.232 34.615 0.00 0.00 0.00 1.28
5675 6568 6.112734 ACATACGGAGCAAAATGAGTGAATA 58.887 36.000 0.00 0.00 0.00 1.75
5676 6569 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
5677 6570 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
5678 6571 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
5679 6572 5.005779 GTCTACATACGGAGCAAAATGAGTG 59.994 44.000 0.00 0.00 0.00 3.51
5680 6573 5.109903 GTCTACATACGGAGCAAAATGAGT 58.890 41.667 0.00 0.00 0.00 3.41
5681 6574 4.508124 GGTCTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
5682 6575 4.439057 GGTCTACATACGGAGCAAAATGA 58.561 43.478 0.00 0.00 0.00 2.57
5683 6576 3.245284 CGGTCTACATACGGAGCAAAATG 59.755 47.826 0.00 0.00 0.00 2.32
5684 6577 3.118884 ACGGTCTACATACGGAGCAAAAT 60.119 43.478 0.00 0.00 0.00 1.82
5685 6578 2.231964 ACGGTCTACATACGGAGCAAAA 59.768 45.455 0.00 0.00 0.00 2.44
5686 6579 1.820519 ACGGTCTACATACGGAGCAAA 59.179 47.619 0.00 0.00 0.00 3.68
5687 6580 1.466856 ACGGTCTACATACGGAGCAA 58.533 50.000 0.00 0.00 0.00 3.91
5688 6581 2.330440 TACGGTCTACATACGGAGCA 57.670 50.000 0.00 0.00 0.00 4.26
5689 6582 3.562505 CAATACGGTCTACATACGGAGC 58.437 50.000 0.00 0.00 0.00 4.70
5690 6583 3.817084 TCCAATACGGTCTACATACGGAG 59.183 47.826 0.00 0.00 35.57 4.63
5691 6584 3.819368 TCCAATACGGTCTACATACGGA 58.181 45.455 0.00 0.00 35.57 4.69
5692 6585 4.572985 TTCCAATACGGTCTACATACGG 57.427 45.455 0.00 0.00 35.57 4.02
5693 6586 6.010294 AGATTCCAATACGGTCTACATACG 57.990 41.667 0.00 0.00 35.57 3.06
5694 6587 7.216973 AGAGATTCCAATACGGTCTACATAC 57.783 40.000 0.00 0.00 35.57 2.39
5695 6588 8.929260 TTAGAGATTCCAATACGGTCTACATA 57.071 34.615 0.00 0.00 35.57 2.29
5696 6589 7.834881 TTAGAGATTCCAATACGGTCTACAT 57.165 36.000 0.00 0.00 35.57 2.29
5697 6590 7.649533 TTTAGAGATTCCAATACGGTCTACA 57.350 36.000 0.00 0.00 35.57 2.74
5698 6591 7.652507 CCTTTTAGAGATTCCAATACGGTCTAC 59.347 40.741 0.00 0.00 35.57 2.59
5699 6592 7.562454 TCCTTTTAGAGATTCCAATACGGTCTA 59.438 37.037 0.00 0.00 35.57 2.59
5700 6593 6.383147 TCCTTTTAGAGATTCCAATACGGTCT 59.617 38.462 0.00 0.00 35.57 3.85
5701 6594 6.479331 GTCCTTTTAGAGATTCCAATACGGTC 59.521 42.308 0.00 0.00 35.57 4.79
5702 6595 6.156429 AGTCCTTTTAGAGATTCCAATACGGT 59.844 38.462 0.00 0.00 35.57 4.83
5703 6596 6.583562 AGTCCTTTTAGAGATTCCAATACGG 58.416 40.000 0.00 0.00 0.00 4.02
5704 6597 9.765795 ATAAGTCCTTTTAGAGATTCCAATACG 57.234 33.333 0.00 0.00 0.00 3.06
5719 6612 7.991460 CCTCCGTTCCTAAATATAAGTCCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
5720 6613 7.419865 CCCTCCGTTCCTAAATATAAGTCCTTT 60.420 40.741 0.00 0.00 0.00 3.11
5721 6614 6.042897 CCCTCCGTTCCTAAATATAAGTCCTT 59.957 42.308 0.00 0.00 0.00 3.36
5722 6615 5.543020 CCCTCCGTTCCTAAATATAAGTCCT 59.457 44.000 0.00 0.00 0.00 3.85
5723 6616 5.541484 TCCCTCCGTTCCTAAATATAAGTCC 59.459 44.000 0.00 0.00 0.00 3.85
5724 6617 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
5725 6618 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
5726 6619 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
5727 6620 8.731591 AATACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
5728 6621 9.827198 TTAATACTCCCTCCGTTCCTAAATATA 57.173 33.333 0.00 0.00 0.00 0.86
5729 6622 8.731591 TTAATACTCCCTCCGTTCCTAAATAT 57.268 34.615 0.00 0.00 0.00 1.28
5730 6623 8.731591 ATTAATACTCCCTCCGTTCCTAAATA 57.268 34.615 0.00 0.00 0.00 1.40
5731 6624 7.628501 ATTAATACTCCCTCCGTTCCTAAAT 57.371 36.000 0.00 0.00 0.00 1.40
5732 6625 7.441903 AATTAATACTCCCTCCGTTCCTAAA 57.558 36.000 0.00 0.00 0.00 1.85
5733 6626 7.441903 AAATTAATACTCCCTCCGTTCCTAA 57.558 36.000 0.00 0.00 0.00 2.69
5734 6627 8.591072 CATAAATTAATACTCCCTCCGTTCCTA 58.409 37.037 0.00 0.00 0.00 2.94
5735 6628 5.970501 AAATTAATACTCCCTCCGTTCCT 57.029 39.130 0.00 0.00 0.00 3.36
5736 6629 7.172703 CACATAAATTAATACTCCCTCCGTTCC 59.827 40.741 0.00 0.00 0.00 3.62
5737 6630 7.307811 GCACATAAATTAATACTCCCTCCGTTC 60.308 40.741 0.00 0.00 0.00 3.95
5738 6631 6.485648 GCACATAAATTAATACTCCCTCCGTT 59.514 38.462 0.00 0.00 0.00 4.44
5739 6632 5.995897 GCACATAAATTAATACTCCCTCCGT 59.004 40.000 0.00 0.00 0.00 4.69
5740 6633 6.231211 AGCACATAAATTAATACTCCCTCCG 58.769 40.000 0.00 0.00 0.00 4.63
5741 6634 8.465273 AAAGCACATAAATTAATACTCCCTCC 57.535 34.615 0.00 0.00 0.00 4.30
5826 6725 8.824756 TTCAACATGTAGATTCCTAGAGTAGT 57.175 34.615 0.00 0.00 0.00 2.73
5827 6726 9.743057 CTTTCAACATGTAGATTCCTAGAGTAG 57.257 37.037 0.00 0.00 0.00 2.57
6047 6956 4.497006 GGCATCAACAGGAAATCAGATTCG 60.497 45.833 0.00 0.00 0.00 3.34
6059 6968 4.735578 GCAAACTATGATGGCATCAACAGG 60.736 45.833 31.81 22.16 43.50 4.00
6099 7008 8.850452 GTTTACAAAAGCTACTGCATCAATTAC 58.150 33.333 0.00 0.00 42.74 1.89
6129 7038 8.185505 TGTTACCAAATGTATTTATTTCTCCGC 58.814 33.333 0.00 0.00 0.00 5.54
6150 7062 8.760569 CAAAACAAAGGTGTGGAATATTGTTAC 58.239 33.333 0.00 0.00 39.34 2.50
6322 7239 9.143631 CCAACATCATTCTTTCTTATTTTGACC 57.856 33.333 0.00 0.00 0.00 4.02
6443 7360 9.671279 TGCATTTGTTATCTTTCTCATTCTCTA 57.329 29.630 0.00 0.00 0.00 2.43
6480 7397 8.491134 GGCATACCAAATATGTATCCCATAGTA 58.509 37.037 0.00 0.00 42.52 1.82
6481 7398 7.184570 AGGCATACCAAATATGTATCCCATAGT 59.815 37.037 0.00 0.00 42.52 2.12
6482 7399 7.577303 AGGCATACCAAATATGTATCCCATAG 58.423 38.462 0.00 0.00 42.52 2.23
6514 7431 8.729805 AGAATGAGAGGAAGTAAATAGCTTTG 57.270 34.615 0.00 0.00 0.00 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.