Multiple sequence alignment - TraesCS5B01G203200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G203200 chr5B 100.000 5879 0 0 1 5879 369611447 369617325 0.000000e+00 10857.0
1 TraesCS5B01G203200 chr5D 91.163 5013 221 108 235 5111 319316385 319321311 0.000000e+00 6599.0
2 TraesCS5B01G203200 chr5D 96.732 612 17 1 5269 5877 319321312 319321923 0.000000e+00 1016.0
3 TraesCS5B01G203200 chr5D 91.566 166 13 1 5103 5267 461072596 461072761 1.650000e-55 228.0
4 TraesCS5B01G203200 chr5D 84.234 222 22 5 1011 1232 404751026 404750818 2.780000e-48 204.0
5 TraesCS5B01G203200 chr5A 93.979 2973 135 19 2167 5111 414779736 414776780 0.000000e+00 4458.0
6 TraesCS5B01G203200 chr5A 89.385 1545 74 36 574 2086 414781354 414779868 0.000000e+00 1862.0
7 TraesCS5B01G203200 chr5A 94.306 562 27 4 5269 5827 414776779 414776220 0.000000e+00 856.0
8 TraesCS5B01G203200 chr5A 88.281 384 30 11 235 616 414781735 414781365 4.180000e-121 446.0
9 TraesCS5B01G203200 chr5A 92.734 289 20 1 5523 5810 650684186 650684474 3.280000e-112 416.0
10 TraesCS5B01G203200 chr5A 90.286 175 16 1 5097 5271 320214234 320214407 1.650000e-55 228.0
11 TraesCS5B01G203200 chr1B 92.517 294 20 2 5518 5810 9638924 9639216 2.530000e-113 420.0
12 TraesCS5B01G203200 chr1B 90.753 292 25 1 5521 5812 13516329 13516040 7.140000e-104 388.0
13 TraesCS5B01G203200 chr1A 92.734 289 20 1 5523 5810 61026985 61026697 3.280000e-112 416.0
14 TraesCS5B01G203200 chr1A 93.125 160 11 0 5108 5267 106220715 106220556 9.850000e-58 235.0
15 TraesCS5B01G203200 chr4A 91.003 289 24 2 5523 5810 589667721 589668008 7.140000e-104 388.0
16 TraesCS5B01G203200 chr6D 85.460 337 37 6 899 1232 273187250 273186923 2.030000e-89 340.0
17 TraesCS5B01G203200 chr6D 90.857 175 15 1 5096 5270 145462635 145462462 3.540000e-57 233.0
18 TraesCS5B01G203200 chr2B 92.442 172 11 2 5101 5272 540431416 540431247 1.640000e-60 244.0
19 TraesCS5B01G203200 chr2B 97.222 36 1 0 1523 1558 791471289 791471324 1.770000e-05 62.1
20 TraesCS5B01G203200 chr3A 80.838 334 37 11 899 1232 153268556 153268250 2.740000e-58 237.0
21 TraesCS5B01G203200 chr3D 92.547 161 12 0 5107 5267 598889731 598889891 1.270000e-56 231.0
22 TraesCS5B01G203200 chr3D 88.947 190 16 4 5099 5288 128214177 128213993 4.580000e-56 230.0
23 TraesCS5B01G203200 chr7D 90.533 169 15 1 5103 5271 397554912 397555079 7.670000e-54 222.0
24 TraesCS5B01G203200 chr2D 90.741 162 15 0 5106 5267 134301651 134301490 3.570000e-52 217.0
25 TraesCS5B01G203200 chr2D 91.111 45 4 0 1523 1567 644375532 644375488 1.770000e-05 62.1
26 TraesCS5B01G203200 chr2A 91.111 45 4 0 1523 1567 769501867 769501823 1.770000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G203200 chr5B 369611447 369617325 5878 False 10857.0 10857 100.00000 1 5879 1 chr5B.!!$F1 5878
1 TraesCS5B01G203200 chr5D 319316385 319321923 5538 False 3807.5 6599 93.94750 235 5877 2 chr5D.!!$F2 5642
2 TraesCS5B01G203200 chr5A 414776220 414781735 5515 True 1905.5 4458 91.48775 235 5827 4 chr5A.!!$R1 5592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
138 139 0.030908 GCAGCTACAGTACTAGGCCG 59.969 60.000 0.00 0.0 0.00 6.13 F
218 219 0.169672 CTCTGGCGGAACAATTGCTG 59.830 55.000 5.05 0.0 0.00 4.41 F
1096 1199 0.107312 ATCAGCATCAGCACAGGACC 60.107 55.000 0.00 0.0 45.49 4.46 F
2801 3058 1.063717 CCCACATACCTGGCTGGATTT 60.064 52.381 18.12 0.0 39.71 2.17 F
3467 3724 0.035343 GGGAGGTGGCTGTACTTTCC 60.035 60.000 0.00 0.0 0.00 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1077 1177 0.107312 GGTCCTGTGCTGATGCTGAT 60.107 55.000 0.00 0.00 40.48 2.90 R
1813 1963 1.005097 AGCATGGGAAACAGCTGATCA 59.995 47.619 23.35 10.79 34.00 2.92 R
2882 3139 0.323178 ATGCAACCAGAGGCTCAAGG 60.323 55.000 18.26 19.52 0.00 3.61 R
3650 3907 0.036388 ATGTCGGGACTGCGTCATTT 60.036 50.000 10.14 0.00 33.68 2.32 R
5254 5535 0.681733 TCATATGCTCCCTCCGCTTC 59.318 55.000 0.00 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.961265 AAGAAAAACGAAGGGAAATAGTAAAAG 57.039 29.630 0.00 0.00 0.00 2.27
29 30 9.346005 AGAAAAACGAAGGGAAATAGTAAAAGA 57.654 29.630 0.00 0.00 0.00 2.52
30 31 9.608617 GAAAAACGAAGGGAAATAGTAAAAGAG 57.391 33.333 0.00 0.00 0.00 2.85
31 32 7.683437 AAACGAAGGGAAATAGTAAAAGAGG 57.317 36.000 0.00 0.00 0.00 3.69
32 33 5.742063 ACGAAGGGAAATAGTAAAAGAGGG 58.258 41.667 0.00 0.00 0.00 4.30
33 34 5.486419 ACGAAGGGAAATAGTAAAAGAGGGA 59.514 40.000 0.00 0.00 0.00 4.20
34 35 6.013119 ACGAAGGGAAATAGTAAAAGAGGGAA 60.013 38.462 0.00 0.00 0.00 3.97
35 36 6.882678 CGAAGGGAAATAGTAAAAGAGGGAAA 59.117 38.462 0.00 0.00 0.00 3.13
36 37 7.556635 CGAAGGGAAATAGTAAAAGAGGGAAAT 59.443 37.037 0.00 0.00 0.00 2.17
37 38 8.595362 AAGGGAAATAGTAAAAGAGGGAAATG 57.405 34.615 0.00 0.00 0.00 2.32
38 39 7.939781 AGGGAAATAGTAAAAGAGGGAAATGA 58.060 34.615 0.00 0.00 0.00 2.57
39 40 8.398743 AGGGAAATAGTAAAAGAGGGAAATGAA 58.601 33.333 0.00 0.00 0.00 2.57
40 41 9.031537 GGGAAATAGTAAAAGAGGGAAATGAAA 57.968 33.333 0.00 0.00 0.00 2.69
48 49 9.990360 GTAAAAGAGGGAAATGAAATAAAACCA 57.010 29.630 0.00 0.00 0.00 3.67
53 54 9.547279 AGAGGGAAATGAAATAAAACCATTAGT 57.453 29.630 0.00 0.00 31.07 2.24
76 77 8.937634 AGTAGAAATCCAATGAAAATTGATGC 57.062 30.769 0.05 0.00 33.55 3.91
77 78 8.533657 AGTAGAAATCCAATGAAAATTGATGCA 58.466 29.630 0.00 0.00 33.55 3.96
78 79 9.153721 GTAGAAATCCAATGAAAATTGATGCAA 57.846 29.630 0.00 0.00 33.55 4.08
79 80 8.263940 AGAAATCCAATGAAAATTGATGCAAG 57.736 30.769 0.00 0.00 33.55 4.01
80 81 6.431198 AATCCAATGAAAATTGATGCAAGC 57.569 33.333 0.00 0.00 33.55 4.01
81 82 4.895961 TCCAATGAAAATTGATGCAAGCA 58.104 34.783 0.00 0.00 33.55 3.91
82 83 4.932799 TCCAATGAAAATTGATGCAAGCAG 59.067 37.500 0.00 0.00 28.24 4.24
83 84 4.693566 CCAATGAAAATTGATGCAAGCAGT 59.306 37.500 0.00 0.00 28.24 4.40
84 85 5.390461 CCAATGAAAATTGATGCAAGCAGTG 60.390 40.000 0.00 0.00 28.24 3.66
85 86 4.587584 TGAAAATTGATGCAAGCAGTGA 57.412 36.364 0.00 0.00 28.24 3.41
86 87 4.300803 TGAAAATTGATGCAAGCAGTGAC 58.699 39.130 0.00 0.00 28.24 3.67
87 88 4.038282 TGAAAATTGATGCAAGCAGTGACT 59.962 37.500 0.00 0.00 28.24 3.41
88 89 3.570926 AATTGATGCAAGCAGTGACTG 57.429 42.857 8.52 8.52 28.24 3.51
89 90 2.259266 TTGATGCAAGCAGTGACTGA 57.741 45.000 18.18 0.00 28.24 3.41
90 91 2.484742 TGATGCAAGCAGTGACTGAT 57.515 45.000 18.18 7.30 32.44 2.90
91 92 3.615224 TGATGCAAGCAGTGACTGATA 57.385 42.857 18.18 0.00 32.44 2.15
92 93 3.941573 TGATGCAAGCAGTGACTGATAA 58.058 40.909 18.18 0.00 32.44 1.75
93 94 4.325972 TGATGCAAGCAGTGACTGATAAA 58.674 39.130 18.18 0.00 32.44 1.40
94 95 4.761227 TGATGCAAGCAGTGACTGATAAAA 59.239 37.500 18.18 0.00 32.44 1.52
95 96 5.241285 TGATGCAAGCAGTGACTGATAAAAA 59.759 36.000 18.18 0.00 32.44 1.94
125 126 2.743636 AAAACTAGCGTCTGCAGCTA 57.256 45.000 9.47 7.44 44.05 3.32
126 127 1.997669 AAACTAGCGTCTGCAGCTAC 58.002 50.000 9.47 1.58 44.05 3.58
127 128 0.888619 AACTAGCGTCTGCAGCTACA 59.111 50.000 9.47 0.00 44.05 2.74
128 129 0.453793 ACTAGCGTCTGCAGCTACAG 59.546 55.000 9.47 7.71 44.05 2.74
129 130 0.453793 CTAGCGTCTGCAGCTACAGT 59.546 55.000 13.69 0.00 44.05 3.55
130 131 1.671328 CTAGCGTCTGCAGCTACAGTA 59.329 52.381 13.69 0.00 44.05 2.74
131 132 0.171455 AGCGTCTGCAGCTACAGTAC 59.829 55.000 13.69 9.51 44.05 2.73
132 133 0.171455 GCGTCTGCAGCTACAGTACT 59.829 55.000 13.69 0.00 42.15 2.73
133 134 1.400846 GCGTCTGCAGCTACAGTACTA 59.599 52.381 13.69 0.00 42.15 1.82
134 135 2.539953 GCGTCTGCAGCTACAGTACTAG 60.540 54.545 13.69 3.78 42.15 2.57
135 136 2.032302 CGTCTGCAGCTACAGTACTAGG 59.968 54.545 13.69 0.00 38.84 3.02
136 137 2.025155 TCTGCAGCTACAGTACTAGGC 58.975 52.381 13.69 0.16 38.84 3.93
137 138 1.067821 CTGCAGCTACAGTACTAGGCC 59.932 57.143 5.73 0.00 32.78 5.19
138 139 0.030908 GCAGCTACAGTACTAGGCCG 59.969 60.000 0.00 0.00 0.00 6.13
139 140 0.669077 CAGCTACAGTACTAGGCCGG 59.331 60.000 0.00 0.00 0.00 6.13
140 141 1.108132 AGCTACAGTACTAGGCCGGC 61.108 60.000 21.18 21.18 0.00 6.13
141 142 2.039509 CTACAGTACTAGGCCGGCC 58.960 63.158 39.29 39.29 0.00 6.13
142 143 1.456331 TACAGTACTAGGCCGGCCC 60.456 63.158 41.72 25.82 36.58 5.80
143 144 3.912907 CAGTACTAGGCCGGCCCG 61.913 72.222 41.72 33.07 39.21 6.13
201 202 3.927552 GCAGTAGGCGATAAACAACTC 57.072 47.619 0.00 0.00 0.00 3.01
202 203 3.522553 GCAGTAGGCGATAAACAACTCT 58.477 45.455 0.00 0.00 0.00 3.24
203 204 3.307242 GCAGTAGGCGATAAACAACTCTG 59.693 47.826 0.00 0.00 0.00 3.35
204 205 3.865745 CAGTAGGCGATAAACAACTCTGG 59.134 47.826 0.00 0.00 0.00 3.86
205 206 1.739067 AGGCGATAAACAACTCTGGC 58.261 50.000 0.00 0.00 0.00 4.85
206 207 0.373716 GGCGATAAACAACTCTGGCG 59.626 55.000 0.00 0.00 0.00 5.69
207 208 0.373716 GCGATAAACAACTCTGGCGG 59.626 55.000 0.00 0.00 0.00 6.13
208 209 2.004583 CGATAAACAACTCTGGCGGA 57.995 50.000 0.00 0.00 0.00 5.54
209 210 2.343101 CGATAAACAACTCTGGCGGAA 58.657 47.619 0.00 0.00 0.00 4.30
210 211 2.093783 CGATAAACAACTCTGGCGGAAC 59.906 50.000 0.00 0.00 0.00 3.62
211 212 2.623878 TAAACAACTCTGGCGGAACA 57.376 45.000 0.00 0.00 0.00 3.18
212 213 1.757682 AAACAACTCTGGCGGAACAA 58.242 45.000 0.00 0.00 0.00 2.83
213 214 1.981256 AACAACTCTGGCGGAACAAT 58.019 45.000 0.00 0.00 0.00 2.71
214 215 1.981256 ACAACTCTGGCGGAACAATT 58.019 45.000 0.00 0.00 0.00 2.32
215 216 1.608590 ACAACTCTGGCGGAACAATTG 59.391 47.619 3.24 3.24 0.00 2.32
216 217 0.598065 AACTCTGGCGGAACAATTGC 59.402 50.000 5.05 0.00 0.00 3.56
217 218 0.250901 ACTCTGGCGGAACAATTGCT 60.251 50.000 5.05 0.00 0.00 3.91
218 219 0.169672 CTCTGGCGGAACAATTGCTG 59.830 55.000 5.05 0.00 0.00 4.41
219 220 1.213537 CTGGCGGAACAATTGCTGG 59.786 57.895 5.05 0.00 0.00 4.85
220 221 1.526575 CTGGCGGAACAATTGCTGGT 61.527 55.000 5.05 0.00 0.00 4.00
221 222 1.080569 GGCGGAACAATTGCTGGTG 60.081 57.895 5.05 0.00 0.00 4.17
222 223 1.734117 GCGGAACAATTGCTGGTGC 60.734 57.895 5.05 0.00 40.20 5.01
231 232 4.994471 TGCTGGTGCAGAGCGGTG 62.994 66.667 11.96 0.00 45.31 4.94
232 233 4.687215 GCTGGTGCAGAGCGGTGA 62.687 66.667 0.00 0.00 39.41 4.02
233 234 2.031012 CTGGTGCAGAGCGGTGAA 59.969 61.111 0.00 0.00 32.44 3.18
286 287 2.203294 GCTCCAACACCCAACGGT 60.203 61.111 0.00 0.00 46.31 4.83
338 352 2.743928 GCTGGACAAGACTGCGGG 60.744 66.667 0.00 0.00 0.00 6.13
419 434 3.362581 CGCGAGGAATTAAGCTGGA 57.637 52.632 0.00 0.00 0.00 3.86
423 438 3.807622 CGCGAGGAATTAAGCTGGAAATA 59.192 43.478 0.00 0.00 0.00 1.40
424 439 4.272504 CGCGAGGAATTAAGCTGGAAATAA 59.727 41.667 0.00 0.00 0.00 1.40
442 457 5.932619 AATAAGTTTCCCTATTGCCAACC 57.067 39.130 0.00 0.00 0.00 3.77
448 463 1.029947 CCCTATTGCCAACCACGACC 61.030 60.000 0.00 0.00 0.00 4.79
449 464 0.322098 CCTATTGCCAACCACGACCA 60.322 55.000 0.00 0.00 0.00 4.02
450 465 0.802494 CTATTGCCAACCACGACCAC 59.198 55.000 0.00 0.00 0.00 4.16
451 466 0.951525 TATTGCCAACCACGACCACG 60.952 55.000 0.00 0.00 45.75 4.94
452 467 2.668185 ATTGCCAACCACGACCACGA 62.668 55.000 0.00 0.00 42.66 4.35
453 468 2.358247 GCCAACCACGACCACGAT 60.358 61.111 0.00 0.00 42.66 3.73
477 494 4.436998 GTGCCCTCCGTCGTCCAG 62.437 72.222 0.00 0.00 0.00 3.86
492 509 1.216710 CCAGACGCTCCTCAAGACC 59.783 63.158 0.00 0.00 0.00 3.85
525 546 2.666190 GCCAGCAGCGAACACTCA 60.666 61.111 0.00 0.00 0.00 3.41
579 600 0.815734 TAGGCCACGAACTAGCTCAC 59.184 55.000 5.01 0.00 0.00 3.51
580 601 0.900647 AGGCCACGAACTAGCTCACT 60.901 55.000 5.01 0.00 0.00 3.41
584 605 2.329379 CCACGAACTAGCTCACTTCAC 58.671 52.381 0.00 0.00 0.00 3.18
611 632 0.249996 CCCGTCGTTAACCCTGTGTT 60.250 55.000 0.00 0.00 41.11 3.32
641 711 7.338710 TGTAACTACGACCTGGTAATACTAGT 58.661 38.462 0.00 0.00 0.00 2.57
649 719 5.269991 ACCTGGTAATACTAGTTGCTCTGA 58.730 41.667 0.00 0.00 0.00 3.27
725 795 4.082679 AGACTCTGAATCAGTCACCGTAAC 60.083 45.833 10.36 0.00 42.51 2.50
731 801 1.324383 TCAGTCACCGTAACTCTGCA 58.676 50.000 0.00 0.00 0.00 4.41
837 935 1.286501 GCCTCAATATCAACGTCGCA 58.713 50.000 0.00 0.00 0.00 5.10
844 942 0.387494 TATCAACGTCGCAGCAACGA 60.387 50.000 14.07 2.66 42.62 3.85
864 962 3.052082 CAAGGGCAGCACGTCCAG 61.052 66.667 0.00 0.00 44.49 3.86
1018 1117 3.760151 GGCATCATATAAGCAATCAGGCA 59.240 43.478 0.00 0.00 35.83 4.75
1067 1167 2.202570 CAAAGATGCAGCAGCCGC 60.203 61.111 7.13 0.00 41.13 6.53
1068 1168 2.674033 AAAGATGCAGCAGCCGCA 60.674 55.556 7.13 5.58 44.94 5.69
1069 1169 2.697761 AAAGATGCAGCAGCCGCAG 61.698 57.895 9.65 0.00 43.88 5.18
1084 1184 3.209812 CAGCCGCAGCATCAGCAT 61.210 61.111 0.00 0.00 45.49 3.79
1096 1199 0.107312 ATCAGCATCAGCACAGGACC 60.107 55.000 0.00 0.00 45.49 4.46
1132 1235 2.359404 GAGAGGGACCACCGGAGA 59.641 66.667 9.46 0.00 46.96 3.71
1173 1276 4.753662 CCACCGGACGGAGAGGGA 62.754 72.222 18.80 0.00 38.96 4.20
1201 1304 2.833582 GAGACGGCCCATCGGAGA 60.834 66.667 0.00 0.00 45.75 3.71
1649 1795 6.127647 ACGACCCGTAAGATATTTAACACTCA 60.128 38.462 0.00 0.00 38.73 3.41
1651 1797 7.437267 CGACCCGTAAGATATTTAACACTCAAT 59.563 37.037 0.00 0.00 43.02 2.57
1652 1798 8.433421 ACCCGTAAGATATTTAACACTCAATG 57.567 34.615 0.00 0.00 43.02 2.82
1653 1799 7.497909 ACCCGTAAGATATTTAACACTCAATGG 59.502 37.037 0.00 0.00 43.02 3.16
1654 1800 7.497909 CCCGTAAGATATTTAACACTCAATGGT 59.502 37.037 0.00 0.00 43.02 3.55
1655 1801 8.889717 CCGTAAGATATTTAACACTCAATGGTT 58.110 33.333 0.00 0.00 43.02 3.67
1677 1824 9.716531 TGGTTAATAATGTTGCATTTTCATTCA 57.283 25.926 9.16 1.35 34.35 2.57
1684 1831 7.972832 ATGTTGCATTTTCATTCATTCAAGT 57.027 28.000 0.00 0.00 0.00 3.16
1686 1833 8.296799 TGTTGCATTTTCATTCATTCAAGTAC 57.703 30.769 0.00 0.00 0.00 2.73
1689 1836 7.092079 TGCATTTTCATTCATTCAAGTACCAG 58.908 34.615 0.00 0.00 0.00 4.00
1690 1837 6.035327 GCATTTTCATTCATTCAAGTACCAGC 59.965 38.462 0.00 0.00 0.00 4.85
1691 1838 6.899393 TTTTCATTCATTCAAGTACCAGCT 57.101 33.333 0.00 0.00 0.00 4.24
1692 1839 7.994425 TTTTCATTCATTCAAGTACCAGCTA 57.006 32.000 0.00 0.00 0.00 3.32
1693 1840 7.615582 TTTCATTCATTCAAGTACCAGCTAG 57.384 36.000 0.00 0.00 0.00 3.42
1694 1841 5.674525 TCATTCATTCAAGTACCAGCTAGG 58.325 41.667 0.00 0.00 45.67 3.02
1709 1856 4.878397 CCAGCTAGGTTGATTACAAGAAGG 59.122 45.833 0.00 0.00 36.64 3.46
1710 1857 4.878397 CAGCTAGGTTGATTACAAGAAGGG 59.122 45.833 0.00 0.00 36.64 3.95
1711 1858 4.080299 AGCTAGGTTGATTACAAGAAGGGG 60.080 45.833 0.00 0.00 36.64 4.79
1712 1859 3.739401 AGGTTGATTACAAGAAGGGGG 57.261 47.619 0.00 0.00 36.64 5.40
1737 1887 2.844122 AAGAACAAACGGTGCAGTTC 57.156 45.000 6.22 6.22 40.37 3.01
1813 1963 4.471904 TTCCTCTTACGTGATGCAAGAT 57.528 40.909 0.00 0.00 0.00 2.40
1991 2141 6.716628 ACTCAAGCATTCCTAAATGAGTCAAA 59.283 34.615 0.00 0.00 42.70 2.69
2035 2185 1.338973 CACTGCTTTGCCACATTCTGT 59.661 47.619 0.00 0.00 0.00 3.41
2082 2233 6.010850 TCACTGGTGAGAATACTAGTTCAGT 58.989 40.000 0.00 0.59 39.92 3.41
2109 2261 7.827236 ACTTAAAGACATCATGTTTCCCGATTA 59.173 33.333 0.00 0.00 0.00 1.75
2110 2262 8.746052 TTAAAGACATCATGTTTCCCGATTAT 57.254 30.769 0.00 0.00 0.00 1.28
2112 2264 8.746052 AAAGACATCATGTTTCCCGATTATTA 57.254 30.769 0.00 0.00 0.00 0.98
2113 2265 8.924511 AAGACATCATGTTTCCCGATTATTAT 57.075 30.769 0.00 0.00 0.00 1.28
2120 2272 9.964303 TCATGTTTCCCGATTATTATTTTGATG 57.036 29.630 0.00 0.00 0.00 3.07
2162 2387 3.114606 TGATCCAATGCCCTCTCACTTA 58.885 45.455 0.00 0.00 0.00 2.24
2165 2390 2.642311 TCCAATGCCCTCTCACTTAACA 59.358 45.455 0.00 0.00 0.00 2.41
2174 2399 5.648092 GCCCTCTCACTTAACACAAATATGT 59.352 40.000 0.00 0.00 41.61 2.29
2196 2421 5.012664 TGTGACACAACTGGACCAATAGTAT 59.987 40.000 5.62 0.00 0.00 2.12
2200 2425 5.043903 CACAACTGGACCAATAGTATCGAG 58.956 45.833 0.00 0.00 0.00 4.04
2229 2479 2.143925 ACCGAACTAAGCTGAAGCAAC 58.856 47.619 4.90 0.00 45.16 4.17
2230 2480 2.143122 CCGAACTAAGCTGAAGCAACA 58.857 47.619 4.90 0.00 45.16 3.33
2231 2481 2.744202 CCGAACTAAGCTGAAGCAACAT 59.256 45.455 4.90 0.00 45.16 2.71
2285 2535 5.371115 ACACCGGAACTACATGAAAAATG 57.629 39.130 9.46 0.00 0.00 2.32
2411 2661 2.355837 GAACGCCGCAGAGTGTCA 60.356 61.111 0.00 0.00 0.00 3.58
2468 2718 1.325355 TTCTCGACGAACCAACCTCT 58.675 50.000 0.00 0.00 0.00 3.69
2490 2740 1.107114 CCTCGACTCCACTAGTGCAT 58.893 55.000 17.86 4.41 39.07 3.96
2519 2769 5.014123 TGTGGTGGAGAAAGTGAAGGATATT 59.986 40.000 0.00 0.00 0.00 1.28
2522 2772 4.336713 GTGGAGAAAGTGAAGGATATTGCC 59.663 45.833 0.00 0.00 0.00 4.52
2524 2774 4.949856 GGAGAAAGTGAAGGATATTGCCAA 59.050 41.667 0.00 0.00 0.00 4.52
2552 2802 2.838386 GCATTGTGCTCATGACGATT 57.162 45.000 0.00 0.00 40.96 3.34
2612 2862 5.359009 CAGAATTGTCATCCTTGCAAGGTAT 59.641 40.000 37.97 27.69 46.54 2.73
2613 2863 6.543465 CAGAATTGTCATCCTTGCAAGGTATA 59.457 38.462 37.97 23.94 46.54 1.47
2633 2886 9.574516 AGGTATACCATTTTATTCAATCTGGTC 57.425 33.333 23.87 0.00 38.02 4.02
2664 2918 5.161358 GCCTGTTAATAACTTCCTTTGTGC 58.839 41.667 4.67 0.00 0.00 4.57
2722 2979 8.740906 TGCACTATGCTATATACTCTTCTAACC 58.259 37.037 2.02 0.00 45.31 2.85
2768 3025 4.461081 GGACGACTGATCTATCTAGGCAAT 59.539 45.833 0.00 0.00 0.00 3.56
2792 3049 1.351017 ACCACACTTCCCACATACCTG 59.649 52.381 0.00 0.00 0.00 4.00
2801 3058 1.063717 CCCACATACCTGGCTGGATTT 60.064 52.381 18.12 0.00 39.71 2.17
2879 3136 5.407407 AGGAGTACGATGAATCAACACTT 57.593 39.130 0.00 0.00 0.00 3.16
2882 3139 3.684788 AGTACGATGAATCAACACTTGGC 59.315 43.478 0.00 0.00 0.00 4.52
2927 3184 2.649129 GGATGGCAGCAAACCCACC 61.649 63.158 4.64 0.00 33.17 4.61
2975 3232 1.992557 ACACCAAGGACACCATACCAT 59.007 47.619 0.00 0.00 0.00 3.55
3206 3463 4.392940 ACAAAGATTTCTCAGTCTGGGTG 58.607 43.478 0.00 0.00 0.00 4.61
3362 3619 1.972872 AACCAGTGTTCAAGCCAGAG 58.027 50.000 0.00 0.00 0.00 3.35
3385 3642 2.031624 GCCAGACTATGAGGAGCAGGA 61.032 57.143 0.00 0.00 0.00 3.86
3467 3724 0.035343 GGGAGGTGGCTGTACTTTCC 60.035 60.000 0.00 0.00 0.00 3.13
3497 3754 0.179225 CACTTAATGTCGTGCGCACC 60.179 55.000 33.23 21.18 0.00 5.01
3593 3850 2.807967 CAGCGGTTCTGATTTCTTGACA 59.192 45.455 0.00 0.00 45.72 3.58
3635 3892 2.283145 ACATCTTTGCAGTCTGCCTT 57.717 45.000 21.99 0.00 44.23 4.35
3650 3907 2.301296 CTGCCTTGTCTTCTTCTCCTCA 59.699 50.000 0.00 0.00 0.00 3.86
3656 3913 5.411053 CCTTGTCTTCTTCTCCTCAAATGAC 59.589 44.000 0.00 0.00 0.00 3.06
3764 4021 3.107601 CTCCCTCATTGTCTACCTTCCA 58.892 50.000 0.00 0.00 0.00 3.53
3947 4204 2.942879 GCCGTCGTGATTGCAACA 59.057 55.556 0.00 0.00 0.00 3.33
4101 4358 0.523072 CCATTGCTACACTGGCACAC 59.477 55.000 0.00 0.00 39.55 3.82
4142 4399 4.383226 GGACCTCTGGGAGAAATCAAGTAC 60.383 50.000 0.00 0.00 36.25 2.73
4343 4600 8.729805 AGAATGAGAGGAAGTAAATAGCTTTG 57.270 34.615 0.00 0.00 0.00 2.77
4375 4632 7.577303 AGGCATACCAAATATGTATCCCATAG 58.423 38.462 0.00 0.00 42.52 2.23
4376 4633 7.184570 AGGCATACCAAATATGTATCCCATAGT 59.815 37.037 0.00 0.00 42.52 2.12
4377 4634 8.491134 GGCATACCAAATATGTATCCCATAGTA 58.509 37.037 0.00 0.00 42.52 1.82
4414 4671 9.671279 TGCATTTGTTATCTTTCTCATTCTCTA 57.329 29.630 0.00 0.00 0.00 2.43
4535 4792 9.143631 CCAACATCATTCTTTCTTATTTTGACC 57.856 33.333 0.00 0.00 0.00 4.02
4707 4969 8.760569 CAAAACAAAGGTGTGGAATATTGTTAC 58.239 33.333 0.00 0.00 39.34 2.50
4728 4993 8.185505 TGTTACCAAATGTATTTATTTCTCCGC 58.814 33.333 0.00 0.00 0.00 5.54
4758 5023 8.850452 GTTTACAAAAGCTACTGCATCAATTAC 58.150 33.333 0.00 0.00 42.74 1.89
4798 5063 4.735578 GCAAACTATGATGGCATCAACAGG 60.736 45.833 31.81 22.16 43.50 4.00
4810 5075 4.497006 GGCATCAACAGGAAATCAGATTCG 60.497 45.833 0.00 0.00 0.00 3.34
5030 5305 9.743057 CTTTCAACATGTAGATTCCTAGAGTAG 57.257 37.037 0.00 0.00 0.00 2.57
5031 5306 8.824756 TTCAACATGTAGATTCCTAGAGTAGT 57.175 34.615 0.00 0.00 0.00 2.73
5116 5397 8.465273 AAAGCACATAAATTAATACTCCCTCC 57.535 34.615 0.00 0.00 0.00 4.30
5117 5398 6.231211 AGCACATAAATTAATACTCCCTCCG 58.769 40.000 0.00 0.00 0.00 4.63
5118 5399 5.995897 GCACATAAATTAATACTCCCTCCGT 59.004 40.000 0.00 0.00 0.00 4.69
5119 5400 6.485648 GCACATAAATTAATACTCCCTCCGTT 59.514 38.462 0.00 0.00 0.00 4.44
5120 5401 7.307811 GCACATAAATTAATACTCCCTCCGTTC 60.308 40.741 0.00 0.00 0.00 3.95
5121 5402 7.172703 CACATAAATTAATACTCCCTCCGTTCC 59.827 40.741 0.00 0.00 0.00 3.62
5122 5403 5.970501 AAATTAATACTCCCTCCGTTCCT 57.029 39.130 0.00 0.00 0.00 3.36
5123 5404 8.591072 CATAAATTAATACTCCCTCCGTTCCTA 58.409 37.037 0.00 0.00 0.00 2.94
5124 5405 7.441903 AAATTAATACTCCCTCCGTTCCTAA 57.558 36.000 0.00 0.00 0.00 2.69
5125 5406 7.441903 AATTAATACTCCCTCCGTTCCTAAA 57.558 36.000 0.00 0.00 0.00 1.85
5126 5407 7.628501 ATTAATACTCCCTCCGTTCCTAAAT 57.371 36.000 0.00 0.00 0.00 1.40
5127 5408 8.731591 ATTAATACTCCCTCCGTTCCTAAATA 57.268 34.615 0.00 0.00 0.00 1.40
5128 5409 8.731591 TTAATACTCCCTCCGTTCCTAAATAT 57.268 34.615 0.00 0.00 0.00 1.28
5129 5410 9.827198 TTAATACTCCCTCCGTTCCTAAATATA 57.173 33.333 0.00 0.00 0.00 0.86
5130 5411 8.731591 AATACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
5131 5412 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
5132 5413 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
5133 5414 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
5134 5415 5.541484 TCCCTCCGTTCCTAAATATAAGTCC 59.459 44.000 0.00 0.00 0.00 3.85
5135 5416 5.543020 CCCTCCGTTCCTAAATATAAGTCCT 59.457 44.000 0.00 0.00 0.00 3.85
5136 5417 6.042897 CCCTCCGTTCCTAAATATAAGTCCTT 59.957 42.308 0.00 0.00 0.00 3.36
5137 5418 7.419865 CCCTCCGTTCCTAAATATAAGTCCTTT 60.420 40.741 0.00 0.00 0.00 3.11
5138 5419 7.991460 CCTCCGTTCCTAAATATAAGTCCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
5153 5434 9.765795 ATAAGTCCTTTTAGAGATTCCAATACG 57.234 33.333 0.00 0.00 0.00 3.06
5154 5435 6.583562 AGTCCTTTTAGAGATTCCAATACGG 58.416 40.000 0.00 0.00 0.00 4.02
5155 5436 6.156429 AGTCCTTTTAGAGATTCCAATACGGT 59.844 38.462 0.00 0.00 35.57 4.83
5156 5437 6.479331 GTCCTTTTAGAGATTCCAATACGGTC 59.521 42.308 0.00 0.00 35.57 4.79
5157 5438 6.383147 TCCTTTTAGAGATTCCAATACGGTCT 59.617 38.462 0.00 0.00 35.57 3.85
5158 5439 7.562454 TCCTTTTAGAGATTCCAATACGGTCTA 59.438 37.037 0.00 0.00 35.57 2.59
5159 5440 7.652507 CCTTTTAGAGATTCCAATACGGTCTAC 59.347 40.741 0.00 0.00 35.57 2.59
5160 5441 7.649533 TTTAGAGATTCCAATACGGTCTACA 57.350 36.000 0.00 0.00 35.57 2.74
5161 5442 7.834881 TTAGAGATTCCAATACGGTCTACAT 57.165 36.000 0.00 0.00 35.57 2.29
5162 5443 8.929260 TTAGAGATTCCAATACGGTCTACATA 57.071 34.615 0.00 0.00 35.57 2.29
5163 5444 7.216973 AGAGATTCCAATACGGTCTACATAC 57.783 40.000 0.00 0.00 35.57 2.39
5164 5445 6.010294 AGATTCCAATACGGTCTACATACG 57.990 41.667 0.00 0.00 35.57 3.06
5165 5446 4.572985 TTCCAATACGGTCTACATACGG 57.427 45.455 0.00 0.00 35.57 4.02
5166 5447 3.819368 TCCAATACGGTCTACATACGGA 58.181 45.455 0.00 0.00 35.57 4.69
5167 5448 3.817084 TCCAATACGGTCTACATACGGAG 59.183 47.826 0.00 0.00 35.57 4.63
5168 5449 3.562505 CAATACGGTCTACATACGGAGC 58.437 50.000 0.00 0.00 0.00 4.70
5169 5450 2.330440 TACGGTCTACATACGGAGCA 57.670 50.000 0.00 0.00 0.00 4.26
5170 5451 1.466856 ACGGTCTACATACGGAGCAA 58.533 50.000 0.00 0.00 0.00 3.91
5171 5452 1.820519 ACGGTCTACATACGGAGCAAA 59.179 47.619 0.00 0.00 0.00 3.68
5172 5453 2.231964 ACGGTCTACATACGGAGCAAAA 59.768 45.455 0.00 0.00 0.00 2.44
5173 5454 3.118884 ACGGTCTACATACGGAGCAAAAT 60.119 43.478 0.00 0.00 0.00 1.82
5174 5455 3.245284 CGGTCTACATACGGAGCAAAATG 59.755 47.826 0.00 0.00 0.00 2.32
5175 5456 4.439057 GGTCTACATACGGAGCAAAATGA 58.561 43.478 0.00 0.00 0.00 2.57
5176 5457 4.508124 GGTCTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
5177 5458 5.109903 GTCTACATACGGAGCAAAATGAGT 58.890 41.667 0.00 0.00 0.00 3.41
5178 5459 5.005779 GTCTACATACGGAGCAAAATGAGTG 59.994 44.000 0.00 0.00 0.00 3.51
5179 5460 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
5180 5461 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
5181 5462 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
5182 5463 6.112734 ACATACGGAGCAAAATGAGTGAATA 58.887 36.000 0.00 0.00 0.00 1.75
5183 5464 6.767902 ACATACGGAGCAAAATGAGTGAATAT 59.232 34.615 0.00 0.00 0.00 1.28
5184 5465 7.931407 ACATACGGAGCAAAATGAGTGAATATA 59.069 33.333 0.00 0.00 0.00 0.86
5185 5466 6.604735 ACGGAGCAAAATGAGTGAATATAC 57.395 37.500 0.00 0.00 0.00 1.47
5186 5467 6.112734 ACGGAGCAAAATGAGTGAATATACA 58.887 36.000 0.00 0.00 0.00 2.29
5187 5468 6.037172 ACGGAGCAAAATGAGTGAATATACAC 59.963 38.462 0.00 0.00 40.60 2.90
5226 5507 2.372264 ACATCCGTATGTAGTCCGTGT 58.628 47.619 0.00 0.00 44.66 4.49
5227 5508 2.756760 ACATCCGTATGTAGTCCGTGTT 59.243 45.455 0.00 0.00 44.66 3.32
5228 5509 2.925578 TCCGTATGTAGTCCGTGTTG 57.074 50.000 0.00 0.00 0.00 3.33
5229 5510 2.435422 TCCGTATGTAGTCCGTGTTGA 58.565 47.619 0.00 0.00 0.00 3.18
5230 5511 2.819019 TCCGTATGTAGTCCGTGTTGAA 59.181 45.455 0.00 0.00 0.00 2.69
5231 5512 3.255395 TCCGTATGTAGTCCGTGTTGAAA 59.745 43.478 0.00 0.00 0.00 2.69
5232 5513 4.082081 TCCGTATGTAGTCCGTGTTGAAAT 60.082 41.667 0.00 0.00 0.00 2.17
5233 5514 4.266976 CCGTATGTAGTCCGTGTTGAAATC 59.733 45.833 0.00 0.00 0.00 2.17
5234 5515 5.100259 CGTATGTAGTCCGTGTTGAAATCT 58.900 41.667 0.00 0.00 0.00 2.40
5235 5516 5.229469 CGTATGTAGTCCGTGTTGAAATCTC 59.771 44.000 0.00 0.00 0.00 2.75
5236 5517 4.866508 TGTAGTCCGTGTTGAAATCTCT 57.133 40.909 0.00 0.00 0.00 3.10
5237 5518 5.970317 TGTAGTCCGTGTTGAAATCTCTA 57.030 39.130 0.00 0.00 0.00 2.43
5238 5519 6.335471 TGTAGTCCGTGTTGAAATCTCTAA 57.665 37.500 0.00 0.00 0.00 2.10
5239 5520 6.751157 TGTAGTCCGTGTTGAAATCTCTAAA 58.249 36.000 0.00 0.00 0.00 1.85
5240 5521 7.211573 TGTAGTCCGTGTTGAAATCTCTAAAA 58.788 34.615 0.00 0.00 0.00 1.52
5241 5522 6.787085 AGTCCGTGTTGAAATCTCTAAAAG 57.213 37.500 0.00 0.00 0.00 2.27
5242 5523 5.701290 AGTCCGTGTTGAAATCTCTAAAAGG 59.299 40.000 0.00 0.00 0.00 3.11
5243 5524 5.469084 GTCCGTGTTGAAATCTCTAAAAGGT 59.531 40.000 0.00 0.00 0.00 3.50
5244 5525 5.699458 TCCGTGTTGAAATCTCTAAAAGGTC 59.301 40.000 0.00 0.00 0.00 3.85
5245 5526 5.701290 CCGTGTTGAAATCTCTAAAAGGTCT 59.299 40.000 0.00 0.00 0.00 3.85
5246 5527 6.204882 CCGTGTTGAAATCTCTAAAAGGTCTT 59.795 38.462 0.00 0.00 0.00 3.01
5247 5528 7.386848 CCGTGTTGAAATCTCTAAAAGGTCTTA 59.613 37.037 0.00 0.00 0.00 2.10
5248 5529 8.936864 CGTGTTGAAATCTCTAAAAGGTCTTAT 58.063 33.333 0.00 0.00 0.00 1.73
5260 5541 9.760077 TCTAAAAGGTCTTATATTTAGAAGCGG 57.240 33.333 4.78 0.00 39.89 5.52
5261 5542 9.760077 CTAAAAGGTCTTATATTTAGAAGCGGA 57.240 33.333 0.00 0.00 37.48 5.54
5262 5543 8.664211 AAAAGGTCTTATATTTAGAAGCGGAG 57.336 34.615 0.00 0.00 0.00 4.63
5263 5544 6.347859 AGGTCTTATATTTAGAAGCGGAGG 57.652 41.667 0.00 0.00 0.00 4.30
5264 5545 5.246429 AGGTCTTATATTTAGAAGCGGAGGG 59.754 44.000 0.00 0.00 0.00 4.30
5265 5546 5.245526 GGTCTTATATTTAGAAGCGGAGGGA 59.754 44.000 0.00 0.00 0.00 4.20
5266 5547 6.391537 GTCTTATATTTAGAAGCGGAGGGAG 58.608 44.000 0.00 0.00 0.00 4.30
5267 5548 3.686916 ATATTTAGAAGCGGAGGGAGC 57.313 47.619 0.00 0.00 0.00 4.70
5295 5576 7.439157 TGAAAATACAGAGACAACCAGAATG 57.561 36.000 0.00 0.00 0.00 2.67
5313 5594 4.225942 AGAATGTCCACACATGTAGGTCAT 59.774 41.667 17.51 17.51 42.89 3.06
5353 5637 6.199908 CGCTCATTTAAGAGTTGAGTCCATAG 59.800 42.308 0.00 0.00 39.24 2.23
5385 5671 7.225784 ACATAGGAGTAACATGATAGCTCAG 57.774 40.000 0.00 0.00 34.12 3.35
5392 5678 7.764443 GGAGTAACATGATAGCTCAGTGTTTAA 59.236 37.037 0.00 0.00 36.01 1.52
5405 5691 3.126514 CAGTGTTTAAGAGAGCCATGCTG 59.873 47.826 0.00 0.00 39.88 4.41
5877 6163 8.458573 AAAATATGGGTAATGTTATTCAGCGA 57.541 30.769 0.00 0.00 0.00 4.93
5878 6164 8.458573 AAATATGGGTAATGTTATTCAGCGAA 57.541 30.769 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.961265 CTTTTACTATTTCCCTTCGTTTTTCTT 57.039 29.630 0.00 0.00 0.00 2.52
3 4 9.346005 TCTTTTACTATTTCCCTTCGTTTTTCT 57.654 29.630 0.00 0.00 0.00 2.52
4 5 9.608617 CTCTTTTACTATTTCCCTTCGTTTTTC 57.391 33.333 0.00 0.00 0.00 2.29
5 6 8.573885 CCTCTTTTACTATTTCCCTTCGTTTTT 58.426 33.333 0.00 0.00 0.00 1.94
6 7 7.176165 CCCTCTTTTACTATTTCCCTTCGTTTT 59.824 37.037 0.00 0.00 0.00 2.43
7 8 6.657966 CCCTCTTTTACTATTTCCCTTCGTTT 59.342 38.462 0.00 0.00 0.00 3.60
8 9 6.013119 TCCCTCTTTTACTATTTCCCTTCGTT 60.013 38.462 0.00 0.00 0.00 3.85
9 10 5.486419 TCCCTCTTTTACTATTTCCCTTCGT 59.514 40.000 0.00 0.00 0.00 3.85
10 11 5.985911 TCCCTCTTTTACTATTTCCCTTCG 58.014 41.667 0.00 0.00 0.00 3.79
11 12 8.687242 CATTTCCCTCTTTTACTATTTCCCTTC 58.313 37.037 0.00 0.00 0.00 3.46
12 13 8.398743 TCATTTCCCTCTTTTACTATTTCCCTT 58.601 33.333 0.00 0.00 0.00 3.95
13 14 7.939781 TCATTTCCCTCTTTTACTATTTCCCT 58.060 34.615 0.00 0.00 0.00 4.20
14 15 8.589701 TTCATTTCCCTCTTTTACTATTTCCC 57.410 34.615 0.00 0.00 0.00 3.97
22 23 9.990360 TGGTTTTATTTCATTTCCCTCTTTTAC 57.010 29.630 0.00 0.00 0.00 2.01
27 28 9.547279 ACTAATGGTTTTATTTCATTTCCCTCT 57.453 29.630 0.00 0.00 33.72 3.69
51 52 8.533657 TGCATCAATTTTCATTGGATTTCTACT 58.466 29.630 0.00 0.00 40.41 2.57
52 53 8.706492 TGCATCAATTTTCATTGGATTTCTAC 57.294 30.769 0.00 0.00 40.41 2.59
53 54 9.373603 CTTGCATCAATTTTCATTGGATTTCTA 57.626 29.630 0.00 0.00 40.41 2.10
54 55 7.148306 GCTTGCATCAATTTTCATTGGATTTCT 60.148 33.333 0.00 0.00 40.41 2.52
55 56 6.964934 GCTTGCATCAATTTTCATTGGATTTC 59.035 34.615 0.00 0.00 40.41 2.17
56 57 6.431543 TGCTTGCATCAATTTTCATTGGATTT 59.568 30.769 0.00 0.00 40.41 2.17
57 58 5.941058 TGCTTGCATCAATTTTCATTGGATT 59.059 32.000 0.00 0.00 40.41 3.01
58 59 5.492895 TGCTTGCATCAATTTTCATTGGAT 58.507 33.333 0.00 0.00 40.41 3.41
59 60 4.895961 TGCTTGCATCAATTTTCATTGGA 58.104 34.783 0.00 0.00 40.41 3.53
60 61 4.693566 ACTGCTTGCATCAATTTTCATTGG 59.306 37.500 0.00 0.00 40.41 3.16
61 62 5.407084 TCACTGCTTGCATCAATTTTCATTG 59.593 36.000 0.00 0.00 41.25 2.82
62 63 5.407387 GTCACTGCTTGCATCAATTTTCATT 59.593 36.000 0.00 0.00 0.00 2.57
63 64 4.927425 GTCACTGCTTGCATCAATTTTCAT 59.073 37.500 0.00 0.00 0.00 2.57
64 65 4.038282 AGTCACTGCTTGCATCAATTTTCA 59.962 37.500 0.00 0.00 0.00 2.69
65 66 4.384846 CAGTCACTGCTTGCATCAATTTTC 59.615 41.667 0.00 0.00 0.00 2.29
66 67 4.038282 TCAGTCACTGCTTGCATCAATTTT 59.962 37.500 0.00 0.00 0.00 1.82
67 68 3.570975 TCAGTCACTGCTTGCATCAATTT 59.429 39.130 0.00 0.00 0.00 1.82
68 69 3.151554 TCAGTCACTGCTTGCATCAATT 58.848 40.909 0.00 0.00 0.00 2.32
69 70 2.786777 TCAGTCACTGCTTGCATCAAT 58.213 42.857 0.00 0.00 0.00 2.57
70 71 2.259266 TCAGTCACTGCTTGCATCAA 57.741 45.000 0.00 0.00 0.00 2.57
71 72 2.484742 ATCAGTCACTGCTTGCATCA 57.515 45.000 0.00 0.00 0.00 3.07
72 73 4.952262 TTTATCAGTCACTGCTTGCATC 57.048 40.909 0.00 0.00 0.00 3.91
73 74 5.710513 TTTTTATCAGTCACTGCTTGCAT 57.289 34.783 0.00 0.00 0.00 3.96
105 106 1.884235 AGCTGCAGACGCTAGTTTTT 58.116 45.000 20.43 0.00 39.64 1.94
106 107 2.288825 TGTAGCTGCAGACGCTAGTTTT 60.289 45.455 20.43 0.00 40.35 2.43
107 108 1.272490 TGTAGCTGCAGACGCTAGTTT 59.728 47.619 20.43 0.00 40.35 2.66
108 109 0.888619 TGTAGCTGCAGACGCTAGTT 59.111 50.000 20.43 0.00 40.35 2.24
109 110 0.453793 CTGTAGCTGCAGACGCTAGT 59.546 55.000 25.86 0.00 40.35 2.57
110 111 0.453793 ACTGTAGCTGCAGACGCTAG 59.546 55.000 34.60 10.84 40.35 3.42
111 112 1.400846 GTACTGTAGCTGCAGACGCTA 59.599 52.381 34.60 15.96 39.62 4.26
112 113 0.171455 GTACTGTAGCTGCAGACGCT 59.829 55.000 34.60 16.96 39.62 5.07
113 114 0.171455 AGTACTGTAGCTGCAGACGC 59.829 55.000 34.60 22.60 39.62 5.19
114 115 2.032302 CCTAGTACTGTAGCTGCAGACG 59.968 54.545 34.60 17.56 39.62 4.18
115 116 2.223618 GCCTAGTACTGTAGCTGCAGAC 60.224 54.545 34.60 25.78 39.62 3.51
116 117 2.025155 GCCTAGTACTGTAGCTGCAGA 58.975 52.381 34.60 17.36 39.62 4.26
117 118 1.067821 GGCCTAGTACTGTAGCTGCAG 59.932 57.143 27.78 27.78 41.92 4.41
118 119 1.112113 GGCCTAGTACTGTAGCTGCA 58.888 55.000 5.39 3.90 0.00 4.41
119 120 0.030908 CGGCCTAGTACTGTAGCTGC 59.969 60.000 5.39 0.00 0.00 5.25
120 121 0.669077 CCGGCCTAGTACTGTAGCTG 59.331 60.000 5.39 10.20 0.00 4.24
121 122 1.108132 GCCGGCCTAGTACTGTAGCT 61.108 60.000 18.11 0.00 0.00 3.32
122 123 1.363080 GCCGGCCTAGTACTGTAGC 59.637 63.158 18.11 5.36 0.00 3.58
123 124 1.461911 GGGCCGGCCTAGTACTGTAG 61.462 65.000 42.70 0.00 36.10 2.74
124 125 1.456331 GGGCCGGCCTAGTACTGTA 60.456 63.158 42.70 0.00 36.10 2.74
125 126 2.762875 GGGCCGGCCTAGTACTGT 60.763 66.667 42.70 0.00 36.10 3.55
126 127 3.912907 CGGGCCGGCCTAGTACTG 61.913 72.222 42.70 18.80 36.10 2.74
175 176 0.108567 TTATCGCCTACTGCAACGCA 60.109 50.000 0.00 0.00 41.33 5.24
176 177 1.003851 TTTATCGCCTACTGCAACGC 58.996 50.000 0.00 0.00 41.33 4.84
177 178 1.996898 TGTTTATCGCCTACTGCAACG 59.003 47.619 0.00 0.00 41.33 4.10
178 179 3.435671 AGTTGTTTATCGCCTACTGCAAC 59.564 43.478 0.00 0.00 41.33 4.17
179 180 3.670625 AGTTGTTTATCGCCTACTGCAA 58.329 40.909 0.00 0.00 41.33 4.08
180 181 3.056107 AGAGTTGTTTATCGCCTACTGCA 60.056 43.478 0.00 0.00 41.33 4.41
181 182 3.307242 CAGAGTTGTTTATCGCCTACTGC 59.693 47.826 0.00 0.00 0.00 4.40
182 183 3.865745 CCAGAGTTGTTTATCGCCTACTG 59.134 47.826 0.00 0.00 0.00 2.74
183 184 3.679083 GCCAGAGTTGTTTATCGCCTACT 60.679 47.826 0.00 0.00 0.00 2.57
184 185 2.608090 GCCAGAGTTGTTTATCGCCTAC 59.392 50.000 0.00 0.00 0.00 3.18
185 186 2.737359 CGCCAGAGTTGTTTATCGCCTA 60.737 50.000 0.00 0.00 0.00 3.93
186 187 1.739067 GCCAGAGTTGTTTATCGCCT 58.261 50.000 0.00 0.00 0.00 5.52
187 188 0.373716 CGCCAGAGTTGTTTATCGCC 59.626 55.000 0.00 0.00 0.00 5.54
188 189 0.373716 CCGCCAGAGTTGTTTATCGC 59.626 55.000 0.00 0.00 0.00 4.58
189 190 2.004583 TCCGCCAGAGTTGTTTATCG 57.995 50.000 0.00 0.00 0.00 2.92
190 191 3.071479 TGTTCCGCCAGAGTTGTTTATC 58.929 45.455 0.00 0.00 0.00 1.75
191 192 3.134574 TGTTCCGCCAGAGTTGTTTAT 57.865 42.857 0.00 0.00 0.00 1.40
192 193 2.623878 TGTTCCGCCAGAGTTGTTTA 57.376 45.000 0.00 0.00 0.00 2.01
193 194 1.757682 TTGTTCCGCCAGAGTTGTTT 58.242 45.000 0.00 0.00 0.00 2.83
194 195 1.981256 ATTGTTCCGCCAGAGTTGTT 58.019 45.000 0.00 0.00 0.00 2.83
195 196 1.608590 CAATTGTTCCGCCAGAGTTGT 59.391 47.619 0.00 0.00 0.00 3.32
196 197 1.666888 GCAATTGTTCCGCCAGAGTTG 60.667 52.381 7.40 0.00 0.00 3.16
197 198 0.598065 GCAATTGTTCCGCCAGAGTT 59.402 50.000 7.40 0.00 0.00 3.01
198 199 0.250901 AGCAATTGTTCCGCCAGAGT 60.251 50.000 7.40 0.00 0.00 3.24
199 200 0.169672 CAGCAATTGTTCCGCCAGAG 59.830 55.000 7.40 0.00 0.00 3.35
200 201 1.243342 CCAGCAATTGTTCCGCCAGA 61.243 55.000 7.40 0.00 0.00 3.86
201 202 1.213537 CCAGCAATTGTTCCGCCAG 59.786 57.895 7.40 0.00 0.00 4.85
202 203 1.530419 ACCAGCAATTGTTCCGCCA 60.530 52.632 7.40 0.00 0.00 5.69
203 204 1.080569 CACCAGCAATTGTTCCGCC 60.081 57.895 7.40 0.00 0.00 6.13
204 205 1.734117 GCACCAGCAATTGTTCCGC 60.734 57.895 7.40 0.00 41.58 5.54
205 206 4.557942 GCACCAGCAATTGTTCCG 57.442 55.556 7.40 0.00 41.58 4.30
215 216 4.687215 TCACCGCTCTGCACCAGC 62.687 66.667 3.16 3.16 42.57 4.85
216 217 2.031012 TTCACCGCTCTGCACCAG 59.969 61.111 0.00 0.00 0.00 4.00
217 218 2.280797 GTTCACCGCTCTGCACCA 60.281 61.111 0.00 0.00 0.00 4.17
218 219 2.029844 GAGTTCACCGCTCTGCACC 61.030 63.158 0.00 0.00 0.00 5.01
219 220 0.601311 AAGAGTTCACCGCTCTGCAC 60.601 55.000 0.00 0.00 41.96 4.57
220 221 0.601046 CAAGAGTTCACCGCTCTGCA 60.601 55.000 0.00 0.00 41.96 4.41
221 222 1.294659 CCAAGAGTTCACCGCTCTGC 61.295 60.000 0.00 0.00 41.96 4.26
222 223 1.294659 GCCAAGAGTTCACCGCTCTG 61.295 60.000 0.00 0.00 41.96 3.35
223 224 1.004440 GCCAAGAGTTCACCGCTCT 60.004 57.895 0.00 0.00 44.40 4.09
224 225 0.674895 ATGCCAAGAGTTCACCGCTC 60.675 55.000 0.00 0.00 0.00 5.03
225 226 0.957395 CATGCCAAGAGTTCACCGCT 60.957 55.000 0.00 0.00 0.00 5.52
226 227 1.503542 CATGCCAAGAGTTCACCGC 59.496 57.895 0.00 0.00 0.00 5.68
227 228 1.236616 TGCATGCCAAGAGTTCACCG 61.237 55.000 16.68 0.00 0.00 4.94
228 229 1.180029 ATGCATGCCAAGAGTTCACC 58.820 50.000 16.68 0.00 0.00 4.02
229 230 2.223433 GCTATGCATGCCAAGAGTTCAC 60.223 50.000 16.68 0.00 0.00 3.18
230 231 2.019249 GCTATGCATGCCAAGAGTTCA 58.981 47.619 16.68 0.00 0.00 3.18
231 232 1.003116 CGCTATGCATGCCAAGAGTTC 60.003 52.381 16.68 0.00 0.00 3.01
232 233 1.019673 CGCTATGCATGCCAAGAGTT 58.980 50.000 16.68 0.00 0.00 3.01
233 234 0.816825 CCGCTATGCATGCCAAGAGT 60.817 55.000 16.68 0.00 0.00 3.24
296 297 2.752238 CTCTCGCAGGAGGGACGT 60.752 66.667 0.00 0.00 44.00 4.34
366 381 2.044123 ACCTTCATCTGCGGGAAATC 57.956 50.000 0.00 0.00 0.00 2.17
367 382 2.094675 CAACCTTCATCTGCGGGAAAT 58.905 47.619 0.00 0.00 0.00 2.17
368 383 1.202879 ACAACCTTCATCTGCGGGAAA 60.203 47.619 0.00 0.00 0.00 3.13
419 434 5.782845 TGGTTGGCAATAGGGAAACTTATTT 59.217 36.000 1.92 0.00 40.28 1.40
423 438 2.897326 GTGGTTGGCAATAGGGAAACTT 59.103 45.455 1.92 0.00 0.00 2.66
424 439 2.525368 GTGGTTGGCAATAGGGAAACT 58.475 47.619 1.92 0.00 0.00 2.66
442 457 2.144069 CGTCGTCATCGTGGTCGTG 61.144 63.158 0.00 0.00 38.33 4.35
449 464 3.338126 GAGGGCACGTCGTCATCGT 62.338 63.158 0.00 0.00 42.33 3.73
450 465 2.579787 GAGGGCACGTCGTCATCG 60.580 66.667 0.00 0.00 32.16 3.84
451 466 2.202756 GGAGGGCACGTCGTCATC 60.203 66.667 0.00 0.00 45.18 2.92
452 467 4.129737 CGGAGGGCACGTCGTCAT 62.130 66.667 0.00 0.00 45.18 3.06
476 493 1.228894 TGGGTCTTGAGGAGCGTCT 60.229 57.895 0.00 0.00 42.80 4.18
477 494 1.216710 CTGGGTCTTGAGGAGCGTC 59.783 63.158 0.00 0.00 42.80 5.19
492 509 1.298157 TGGCATTCGTTCGAAGCTGG 61.298 55.000 19.55 9.90 0.00 4.85
517 538 0.390340 TGATCTGCCGCTGAGTGTTC 60.390 55.000 6.12 0.00 0.00 3.18
525 546 1.253593 TGTGACTCTGATCTGCCGCT 61.254 55.000 0.00 0.00 0.00 5.52
579 600 1.269998 ACGACGGGAAGAGAAGTGAAG 59.730 52.381 0.00 0.00 0.00 3.02
580 601 1.325355 ACGACGGGAAGAGAAGTGAA 58.675 50.000 0.00 0.00 0.00 3.18
584 605 2.603953 GGTTAACGACGGGAAGAGAAG 58.396 52.381 0.00 0.00 0.00 2.85
611 632 9.273016 GTATTACCAGGTCGTAGTTACATAGTA 57.727 37.037 0.00 0.00 0.00 1.82
641 711 2.493675 AGAATACAGAGCGTCAGAGCAA 59.506 45.455 0.00 0.00 40.15 3.91
649 719 1.135083 CCAACGGAGAATACAGAGCGT 60.135 52.381 0.00 0.00 0.00 5.07
704 774 3.827302 AGTTACGGTGACTGATTCAGAGT 59.173 43.478 20.33 12.70 33.71 3.24
719 789 0.389948 GGACTGGTGCAGAGTTACGG 60.390 60.000 0.00 0.00 35.18 4.02
725 795 0.954449 CAGCTTGGACTGGTGCAGAG 60.954 60.000 0.00 0.00 35.18 3.35
731 801 2.282040 GCTGCAGCTTGGACTGGT 60.282 61.111 31.33 0.00 38.16 4.00
749 819 3.449746 AATGGTTACCTTTGCTGGCTA 57.550 42.857 2.07 0.00 0.00 3.93
815 913 1.258982 CGACGTTGATATTGAGGCAGC 59.741 52.381 0.00 0.00 0.00 5.25
854 952 3.807631 TTTCGCAGCTGGACGTGCT 62.808 57.895 17.12 0.00 42.06 4.40
855 953 3.345808 TTTCGCAGCTGGACGTGC 61.346 61.111 17.12 0.00 36.27 5.34
860 958 1.600636 CCTTGGTTTCGCAGCTGGA 60.601 57.895 17.12 8.36 0.00 3.86
1067 1167 3.182472 GATGCTGATGCTGCGGCTG 62.182 63.158 20.27 7.50 40.79 4.85
1068 1168 2.900838 GATGCTGATGCTGCGGCT 60.901 61.111 20.27 3.90 40.79 5.52
1069 1169 3.182472 CTGATGCTGATGCTGCGGC 62.182 63.158 11.65 11.65 40.48 6.53
1070 1170 3.023118 CTGATGCTGATGCTGCGG 58.977 61.111 0.00 0.00 40.48 5.69
1071 1171 2.328289 GCTGATGCTGATGCTGCG 59.672 61.111 0.00 0.00 40.48 5.18
1072 1172 1.064296 GTGCTGATGCTGATGCTGC 59.936 57.895 0.00 0.00 40.48 5.25
1073 1173 0.378610 CTGTGCTGATGCTGATGCTG 59.621 55.000 0.00 0.00 40.48 4.41
1074 1174 0.748367 CCTGTGCTGATGCTGATGCT 60.748 55.000 0.00 0.00 40.48 3.79
1075 1175 0.746923 TCCTGTGCTGATGCTGATGC 60.747 55.000 0.00 0.00 40.48 3.91
1076 1176 1.015109 GTCCTGTGCTGATGCTGATG 58.985 55.000 0.00 0.00 40.48 3.07
1077 1177 0.107312 GGTCCTGTGCTGATGCTGAT 60.107 55.000 0.00 0.00 40.48 2.90
1078 1178 1.297689 GGTCCTGTGCTGATGCTGA 59.702 57.895 0.00 0.00 40.48 4.26
1079 1179 2.104859 CGGTCCTGTGCTGATGCTG 61.105 63.158 0.00 0.00 40.48 4.41
1080 1180 2.267006 CGGTCCTGTGCTGATGCT 59.733 61.111 0.00 0.00 40.48 3.79
1084 1184 3.321648 ATGGCGGTCCTGTGCTGA 61.322 61.111 0.00 0.00 0.00 4.26
1282 1424 4.728110 TTCCTCTCCGTCCGGCGA 62.728 66.667 17.96 0.00 44.77 5.54
1516 1661 3.461773 CCGAGGATGGCGGTGACT 61.462 66.667 0.00 0.00 43.66 3.41
1651 1797 9.716531 TGAATGAAAATGCAACATTATTAACCA 57.283 25.926 0.00 0.00 34.94 3.67
1658 1804 9.491675 ACTTGAATGAATGAAAATGCAACATTA 57.508 25.926 0.00 0.00 34.94 1.90
1659 1805 8.385898 ACTTGAATGAATGAAAATGCAACATT 57.614 26.923 10.09 10.09 37.03 2.71
1686 1833 4.878397 CCTTCTTGTAATCAACCTAGCTGG 59.122 45.833 0.00 0.00 42.93 4.85
1689 1836 4.200092 CCCCTTCTTGTAATCAACCTAGC 58.800 47.826 0.00 0.00 0.00 3.42
1690 1837 4.781934 CCCCCTTCTTGTAATCAACCTAG 58.218 47.826 0.00 0.00 0.00 3.02
1691 1838 4.855298 CCCCCTTCTTGTAATCAACCTA 57.145 45.455 0.00 0.00 0.00 3.08
1692 1839 3.739401 CCCCCTTCTTGTAATCAACCT 57.261 47.619 0.00 0.00 0.00 3.50
1709 1856 1.611977 CCGTTTGTTCTTTCTTCCCCC 59.388 52.381 0.00 0.00 0.00 5.40
1710 1857 2.034179 CACCGTTTGTTCTTTCTTCCCC 59.966 50.000 0.00 0.00 0.00 4.81
1711 1858 2.543031 GCACCGTTTGTTCTTTCTTCCC 60.543 50.000 0.00 0.00 0.00 3.97
1712 1859 2.098443 TGCACCGTTTGTTCTTTCTTCC 59.902 45.455 0.00 0.00 0.00 3.46
1713 1860 3.181500 ACTGCACCGTTTGTTCTTTCTTC 60.181 43.478 0.00 0.00 0.00 2.87
1714 1861 2.752903 ACTGCACCGTTTGTTCTTTCTT 59.247 40.909 0.00 0.00 0.00 2.52
1715 1862 2.365582 ACTGCACCGTTTGTTCTTTCT 58.634 42.857 0.00 0.00 0.00 2.52
1716 1863 2.844122 ACTGCACCGTTTGTTCTTTC 57.156 45.000 0.00 0.00 0.00 2.62
1737 1887 7.672983 TCAAGTTTCAGTTTAGAGCATAAGG 57.327 36.000 0.00 0.00 0.00 2.69
1813 1963 1.005097 AGCATGGGAAACAGCTGATCA 59.995 47.619 23.35 10.79 34.00 2.92
2035 2185 9.056005 GTGATGCTTATGTGATCAATTAAGGTA 57.944 33.333 19.75 7.65 0.00 3.08
2082 2233 6.703319 TCGGGAAACATGATGTCTTTAAGTA 58.297 36.000 0.00 0.00 0.00 2.24
2090 2242 9.965824 AAAATAATAATCGGGAAACATGATGTC 57.034 29.630 0.00 0.00 0.00 3.06
2109 2261 8.851541 ACTGCAATGGAAAACATCAAAATAAT 57.148 26.923 0.00 0.00 39.40 1.28
2110 2262 9.421806 CTACTGCAATGGAAAACATCAAAATAA 57.578 29.630 0.00 0.00 39.40 1.40
2112 2264 7.669427 TCTACTGCAATGGAAAACATCAAAAT 58.331 30.769 0.00 0.00 39.40 1.82
2113 2265 7.048629 TCTACTGCAATGGAAAACATCAAAA 57.951 32.000 0.00 0.00 39.40 2.44
2119 2271 5.534278 TCACAATCTACTGCAATGGAAAACA 59.466 36.000 0.00 0.00 0.00 2.83
2120 2272 6.012658 TCACAATCTACTGCAATGGAAAAC 57.987 37.500 0.00 0.00 0.00 2.43
2130 2355 3.004106 GGCATTGGATCACAATCTACTGC 59.996 47.826 6.48 5.81 46.67 4.40
2132 2357 3.461085 AGGGCATTGGATCACAATCTACT 59.539 43.478 6.48 3.61 46.67 2.57
2165 2390 4.518970 GGTCCAGTTGTGTCACATATTTGT 59.481 41.667 6.48 0.00 36.15 2.83
2174 2399 5.623596 CGATACTATTGGTCCAGTTGTGTCA 60.624 44.000 19.34 1.06 0.00 3.58
2178 2403 4.099573 CCTCGATACTATTGGTCCAGTTGT 59.900 45.833 6.69 6.69 0.00 3.32
2200 2425 1.062148 GCTTAGTTCGGTTGCGATTCC 59.938 52.381 0.00 0.00 0.00 3.01
2250 2500 6.342338 AGTTCCGGTGTACCAGATATTATC 57.658 41.667 0.00 0.00 35.14 1.75
2263 2513 4.217550 CCATTTTTCATGTAGTTCCGGTGT 59.782 41.667 0.00 0.00 0.00 4.16
2285 2535 1.269448 TGAACAATTTTCTCAGGCGCC 59.731 47.619 21.89 21.89 0.00 6.53
2411 2661 1.210234 TGGATGATGTCTGTGCCGATT 59.790 47.619 0.00 0.00 0.00 3.34
2468 2718 0.965866 CACTAGTGGAGTCGAGGCCA 60.966 60.000 15.49 2.16 35.64 5.36
2490 2740 3.035363 TCACTTTCTCCACCACACTGTA 58.965 45.455 0.00 0.00 0.00 2.74
2519 2769 1.259609 CAATGCTTCCTCCTTTGGCA 58.740 50.000 0.00 0.00 37.32 4.92
2522 2772 2.358939 GCACAATGCTTCCTCCTTTG 57.641 50.000 0.00 0.00 40.96 2.77
2549 2799 6.956202 ATCCTGAAAGATGGTTGATGAATC 57.044 37.500 0.00 0.00 34.07 2.52
2552 2802 6.156775 TCTGTATCCTGAAAGATGGTTGATGA 59.843 38.462 0.00 0.00 34.07 2.92
2612 2862 9.396022 GAGAAGACCAGATTGAATAAAATGGTA 57.604 33.333 4.47 0.00 38.24 3.25
2613 2863 7.890127 TGAGAAGACCAGATTGAATAAAATGGT 59.110 33.333 4.20 4.20 39.82 3.55
2633 2886 5.586643 GGAAGTTATTAACAGGCCTGAGAAG 59.413 44.000 39.19 13.14 0.00 2.85
2664 2918 8.966868 ACTGGAATGTAATTAACCATTAACAGG 58.033 33.333 21.51 12.68 38.79 4.00
2722 2979 8.624776 GTCCTCTGGATAAAATTATTGGAACTG 58.375 37.037 0.00 0.00 32.73 3.16
2768 3025 0.850100 ATGTGGGAAGTGTGGTTGGA 59.150 50.000 0.00 0.00 0.00 3.53
2792 3049 3.140814 GGTCGGCCAAATCCAGCC 61.141 66.667 0.00 0.00 46.17 4.85
2882 3139 0.323178 ATGCAACCAGAGGCTCAAGG 60.323 55.000 18.26 19.52 0.00 3.61
2927 3184 2.155194 CGGAGTCTTCGCAGCTTCG 61.155 63.158 0.00 0.00 0.00 3.79
2975 3232 2.325484 TGCCTGAACTGGACTGACTTA 58.675 47.619 2.01 0.00 0.00 2.24
3206 3463 0.036765 TCCCTGCGACACCATTGTAC 60.037 55.000 0.00 0.00 35.47 2.90
3362 3619 0.678950 GCTCCTCATAGTCTGGCTCC 59.321 60.000 0.00 0.00 0.00 4.70
3385 3642 5.549347 CATCTAGTGGCTCAATATCAAGCT 58.451 41.667 8.66 0.00 38.58 3.74
3482 3739 2.435234 GGGGTGCGCACGACATTA 60.435 61.111 32.35 0.00 0.00 1.90
3588 3845 2.083774 GAGGATGCGGTTGATTGTCAA 58.916 47.619 0.00 0.00 33.32 3.18
3593 3850 2.496899 AGTTGAGGATGCGGTTGATT 57.503 45.000 0.00 0.00 0.00 2.57
3635 3892 4.560128 CGTCATTTGAGGAGAAGAAGACA 58.440 43.478 0.00 0.00 32.08 3.41
3650 3907 0.036388 ATGTCGGGACTGCGTCATTT 60.036 50.000 10.14 0.00 33.68 2.32
3656 3913 1.154205 GGATGAATGTCGGGACTGCG 61.154 60.000 0.00 0.00 0.00 5.18
3764 4021 1.152881 GCCCTGGATGGCGAAGAAT 60.153 57.895 0.00 0.00 42.54 2.40
3836 4093 4.620803 GCAAAGAGGACGATCCAGAAGTAA 60.621 45.833 6.78 0.00 39.61 2.24
3947 4204 0.681733 TGAGGAAGAAGAGCGCTGTT 59.318 50.000 21.01 21.01 0.00 3.16
4142 4399 2.422479 CAGTTGATCATGAAGGCCACTG 59.578 50.000 5.01 6.47 0.00 3.66
4343 4600 2.678471 ATTTGGTATGCCTTTGCTGC 57.322 45.000 0.16 0.00 38.71 5.25
4375 4632 8.454106 AGATAACAAATGCACACAAAGAGATAC 58.546 33.333 0.00 0.00 0.00 2.24
4376 4633 8.565896 AGATAACAAATGCACACAAAGAGATA 57.434 30.769 0.00 0.00 0.00 1.98
4377 4634 7.458409 AGATAACAAATGCACACAAAGAGAT 57.542 32.000 0.00 0.00 0.00 2.75
4414 4671 7.341256 AGGAGATAACAAATGCATTCTGTCAAT 59.659 33.333 13.38 14.40 0.00 2.57
4535 4792 2.301346 GGGGCACATCTACCTGAATTG 58.699 52.381 0.00 0.00 0.00 2.32
4564 4821 0.725784 CAACGAAATGCTGCACGGTC 60.726 55.000 3.57 1.50 0.00 4.79
4655 4917 9.190858 GCAAGTTATTCATTGTAAAATGTGTGA 57.809 29.630 5.52 0.00 0.00 3.58
4680 4942 5.757808 ACAATATTCCACACCTTTGTTTTGC 59.242 36.000 0.00 0.00 31.66 3.68
4707 4969 8.567948 ACATAGCGGAGAAATAAATACATTTGG 58.432 33.333 0.00 0.00 0.00 3.28
4728 4993 7.751732 TGATGCAGTAGCTTTTGTAAACATAG 58.248 34.615 0.00 0.00 42.74 2.23
4758 5023 0.888736 TGCTTGTCCGTGTCCATTGG 60.889 55.000 0.00 0.00 0.00 3.16
4798 5063 5.578727 AGACTACTTGTGCGAATCTGATTTC 59.421 40.000 4.11 1.05 0.00 2.17
4810 5075 8.703604 TTTCTCATATTGTAGACTACTTGTGC 57.296 34.615 13.67 0.00 0.00 4.57
5080 5359 7.625828 AATTTATGTGCTTTAGTAGTGGTCC 57.374 36.000 0.00 0.00 0.00 4.46
5111 5392 5.543020 AGGACTTATATTTAGGAACGGAGGG 59.457 44.000 0.00 0.00 0.00 4.30
5112 5393 6.667558 AGGACTTATATTTAGGAACGGAGG 57.332 41.667 0.00 0.00 0.00 4.30
5113 5394 8.959705 AAAAGGACTTATATTTAGGAACGGAG 57.040 34.615 0.00 0.00 0.00 4.63
5127 5408 9.765795 CGTATTGGAATCTCTAAAAGGACTTAT 57.234 33.333 0.00 0.00 0.00 1.73
5128 5409 8.202137 CCGTATTGGAATCTCTAAAAGGACTTA 58.798 37.037 0.00 0.00 42.00 2.24
5129 5410 7.048512 CCGTATTGGAATCTCTAAAAGGACTT 58.951 38.462 0.00 0.00 42.00 3.01
5130 5411 6.156429 ACCGTATTGGAATCTCTAAAAGGACT 59.844 38.462 0.00 0.00 42.00 3.85
5131 5412 6.346896 ACCGTATTGGAATCTCTAAAAGGAC 58.653 40.000 0.00 0.00 42.00 3.85
5132 5413 6.383147 AGACCGTATTGGAATCTCTAAAAGGA 59.617 38.462 0.00 0.00 42.00 3.36
5133 5414 6.583562 AGACCGTATTGGAATCTCTAAAAGG 58.416 40.000 0.00 0.00 42.00 3.11
5134 5415 8.195436 TGTAGACCGTATTGGAATCTCTAAAAG 58.805 37.037 0.00 0.00 42.00 2.27
5135 5416 8.070034 TGTAGACCGTATTGGAATCTCTAAAA 57.930 34.615 0.00 0.00 42.00 1.52
5136 5417 7.649533 TGTAGACCGTATTGGAATCTCTAAA 57.350 36.000 0.00 0.00 42.00 1.85
5137 5418 7.834881 ATGTAGACCGTATTGGAATCTCTAA 57.165 36.000 0.00 0.00 42.00 2.10
5138 5419 7.118825 CGTATGTAGACCGTATTGGAATCTCTA 59.881 40.741 0.00 0.00 42.00 2.43
5139 5420 6.072618 CGTATGTAGACCGTATTGGAATCTCT 60.073 42.308 0.00 0.00 42.00 3.10
5140 5421 6.084925 CGTATGTAGACCGTATTGGAATCTC 58.915 44.000 0.00 0.00 42.00 2.75
5141 5422 5.048224 CCGTATGTAGACCGTATTGGAATCT 60.048 44.000 0.00 0.00 42.00 2.40
5142 5423 5.048504 TCCGTATGTAGACCGTATTGGAATC 60.049 44.000 0.00 0.00 42.00 2.52
5143 5424 4.828939 TCCGTATGTAGACCGTATTGGAAT 59.171 41.667 0.00 0.00 42.00 3.01
5144 5425 4.206375 TCCGTATGTAGACCGTATTGGAA 58.794 43.478 0.00 0.00 42.00 3.53
5145 5426 3.817084 CTCCGTATGTAGACCGTATTGGA 59.183 47.826 0.00 0.00 42.00 3.53
5146 5427 3.611057 GCTCCGTATGTAGACCGTATTGG 60.611 52.174 0.00 0.00 46.41 3.16
5147 5428 3.004002 TGCTCCGTATGTAGACCGTATTG 59.996 47.826 0.00 0.00 0.00 1.90
5148 5429 3.216800 TGCTCCGTATGTAGACCGTATT 58.783 45.455 0.00 0.00 0.00 1.89
5149 5430 2.854963 TGCTCCGTATGTAGACCGTAT 58.145 47.619 0.00 0.00 0.00 3.06
5150 5431 2.330440 TGCTCCGTATGTAGACCGTA 57.670 50.000 0.00 0.00 0.00 4.02
5151 5432 1.466856 TTGCTCCGTATGTAGACCGT 58.533 50.000 0.00 0.00 0.00 4.83
5152 5433 2.572191 TTTGCTCCGTATGTAGACCG 57.428 50.000 0.00 0.00 0.00 4.79
5153 5434 4.439057 TCATTTTGCTCCGTATGTAGACC 58.561 43.478 0.00 0.00 0.00 3.85
5154 5435 5.005779 CACTCATTTTGCTCCGTATGTAGAC 59.994 44.000 0.00 0.00 0.00 2.59
5155 5436 5.105513 TCACTCATTTTGCTCCGTATGTAGA 60.106 40.000 0.00 0.00 0.00 2.59
5156 5437 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
5157 5438 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
5158 5439 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
5159 5440 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
5160 5441 7.931407 TGTATATTCACTCATTTTGCTCCGTAT 59.069 33.333 0.00 0.00 0.00 3.06
5161 5442 7.223971 GTGTATATTCACTCATTTTGCTCCGTA 59.776 37.037 5.30 0.00 35.68 4.02
5162 5443 6.037172 GTGTATATTCACTCATTTTGCTCCGT 59.963 38.462 5.30 0.00 35.68 4.69
5163 5444 6.258727 AGTGTATATTCACTCATTTTGCTCCG 59.741 38.462 9.03 0.00 44.07 4.63
5164 5445 7.559590 AGTGTATATTCACTCATTTTGCTCC 57.440 36.000 9.03 0.00 44.07 4.70
5196 5477 9.339850 GGACTACATACGGATGTATATAGACAT 57.660 37.037 20.64 12.70 45.42 3.06
5197 5478 7.493645 CGGACTACATACGGATGTATATAGACA 59.506 40.741 20.64 2.07 45.42 3.41
5198 5479 7.493971 ACGGACTACATACGGATGTATATAGAC 59.506 40.741 20.64 10.95 45.42 2.59
5199 5480 7.493645 CACGGACTACATACGGATGTATATAGA 59.506 40.741 20.64 0.00 45.42 1.98
5200 5481 7.279536 ACACGGACTACATACGGATGTATATAG 59.720 40.741 20.64 13.28 45.42 1.31
5201 5482 7.105588 ACACGGACTACATACGGATGTATATA 58.894 38.462 20.64 0.52 45.42 0.86
5202 5483 5.942236 ACACGGACTACATACGGATGTATAT 59.058 40.000 20.64 12.15 45.42 0.86
5203 5484 5.308014 ACACGGACTACATACGGATGTATA 58.692 41.667 20.64 1.71 45.42 1.47
5204 5485 4.139786 ACACGGACTACATACGGATGTAT 58.860 43.478 20.64 11.04 45.42 2.29
5205 5486 3.544684 ACACGGACTACATACGGATGTA 58.455 45.455 19.32 19.32 44.77 2.29
5207 5488 3.113322 CAACACGGACTACATACGGATG 58.887 50.000 5.94 5.94 39.16 3.51
5208 5489 3.018856 TCAACACGGACTACATACGGAT 58.981 45.455 0.00 0.00 0.00 4.18
5209 5490 2.435422 TCAACACGGACTACATACGGA 58.565 47.619 0.00 0.00 0.00 4.69
5210 5491 2.925578 TCAACACGGACTACATACGG 57.074 50.000 0.00 0.00 0.00 4.02
5211 5492 5.100259 AGATTTCAACACGGACTACATACG 58.900 41.667 0.00 0.00 0.00 3.06
5212 5493 6.331061 AGAGATTTCAACACGGACTACATAC 58.669 40.000 0.00 0.00 0.00 2.39
5213 5494 6.525578 AGAGATTTCAACACGGACTACATA 57.474 37.500 0.00 0.00 0.00 2.29
5214 5495 5.407407 AGAGATTTCAACACGGACTACAT 57.593 39.130 0.00 0.00 0.00 2.29
5215 5496 4.866508 AGAGATTTCAACACGGACTACA 57.133 40.909 0.00 0.00 0.00 2.74
5216 5497 7.148623 CCTTTTAGAGATTTCAACACGGACTAC 60.149 40.741 0.00 0.00 0.00 2.73
5217 5498 6.872020 CCTTTTAGAGATTTCAACACGGACTA 59.128 38.462 0.00 0.00 0.00 2.59
5218 5499 5.701290 CCTTTTAGAGATTTCAACACGGACT 59.299 40.000 0.00 0.00 0.00 3.85
5219 5500 5.469084 ACCTTTTAGAGATTTCAACACGGAC 59.531 40.000 0.00 0.00 0.00 4.79
5220 5501 5.617252 ACCTTTTAGAGATTTCAACACGGA 58.383 37.500 0.00 0.00 0.00 4.69
5221 5502 5.701290 AGACCTTTTAGAGATTTCAACACGG 59.299 40.000 0.00 0.00 0.00 4.94
5222 5503 6.787085 AGACCTTTTAGAGATTTCAACACG 57.213 37.500 0.00 0.00 0.00 4.49
5234 5515 9.760077 CCGCTTCTAAATATAAGACCTTTTAGA 57.240 33.333 0.00 0.00 38.33 2.10
5235 5516 9.760077 TCCGCTTCTAAATATAAGACCTTTTAG 57.240 33.333 0.00 0.00 34.47 1.85
5236 5517 9.760077 CTCCGCTTCTAAATATAAGACCTTTTA 57.240 33.333 0.00 0.00 0.00 1.52
5237 5518 7.715686 CCTCCGCTTCTAAATATAAGACCTTTT 59.284 37.037 0.00 0.00 0.00 2.27
5238 5519 7.217906 CCTCCGCTTCTAAATATAAGACCTTT 58.782 38.462 0.00 0.00 0.00 3.11
5239 5520 6.239629 CCCTCCGCTTCTAAATATAAGACCTT 60.240 42.308 0.00 0.00 0.00 3.50
5240 5521 5.246429 CCCTCCGCTTCTAAATATAAGACCT 59.754 44.000 0.00 0.00 0.00 3.85
5241 5522 5.245526 TCCCTCCGCTTCTAAATATAAGACC 59.754 44.000 0.00 0.00 0.00 3.85
5242 5523 6.342338 TCCCTCCGCTTCTAAATATAAGAC 57.658 41.667 0.00 0.00 0.00 3.01
5243 5524 5.047235 GCTCCCTCCGCTTCTAAATATAAGA 60.047 44.000 0.00 0.00 0.00 2.10
5244 5525 5.172205 GCTCCCTCCGCTTCTAAATATAAG 58.828 45.833 0.00 0.00 0.00 1.73
5245 5526 4.591498 TGCTCCCTCCGCTTCTAAATATAA 59.409 41.667 0.00 0.00 0.00 0.98
5246 5527 4.157246 TGCTCCCTCCGCTTCTAAATATA 58.843 43.478 0.00 0.00 0.00 0.86
5247 5528 2.972713 TGCTCCCTCCGCTTCTAAATAT 59.027 45.455 0.00 0.00 0.00 1.28
5248 5529 2.394632 TGCTCCCTCCGCTTCTAAATA 58.605 47.619 0.00 0.00 0.00 1.40
5249 5530 1.204146 TGCTCCCTCCGCTTCTAAAT 58.796 50.000 0.00 0.00 0.00 1.40
5250 5531 1.204146 ATGCTCCCTCCGCTTCTAAA 58.796 50.000 0.00 0.00 0.00 1.85
5251 5532 2.082140 TATGCTCCCTCCGCTTCTAA 57.918 50.000 0.00 0.00 0.00 2.10
5252 5533 1.895798 CATATGCTCCCTCCGCTTCTA 59.104 52.381 0.00 0.00 0.00 2.10
5253 5534 0.683973 CATATGCTCCCTCCGCTTCT 59.316 55.000 0.00 0.00 0.00 2.85
5254 5535 0.681733 TCATATGCTCCCTCCGCTTC 59.318 55.000 0.00 0.00 0.00 3.86
5255 5536 1.131638 TTCATATGCTCCCTCCGCTT 58.868 50.000 0.00 0.00 0.00 4.68
5256 5537 1.131638 TTTCATATGCTCCCTCCGCT 58.868 50.000 0.00 0.00 0.00 5.52
5257 5538 1.967319 TTTTCATATGCTCCCTCCGC 58.033 50.000 0.00 0.00 0.00 5.54
5258 5539 4.641396 TGTATTTTCATATGCTCCCTCCG 58.359 43.478 0.00 0.00 0.00 4.63
5259 5540 5.869579 TCTGTATTTTCATATGCTCCCTCC 58.130 41.667 0.00 0.00 0.00 4.30
5260 5541 6.648725 GTCTCTGTATTTTCATATGCTCCCTC 59.351 42.308 0.00 0.00 0.00 4.30
5261 5542 6.100279 TGTCTCTGTATTTTCATATGCTCCCT 59.900 38.462 0.00 0.00 0.00 4.20
5262 5543 6.291377 TGTCTCTGTATTTTCATATGCTCCC 58.709 40.000 0.00 0.00 0.00 4.30
5263 5544 7.254932 GGTTGTCTCTGTATTTTCATATGCTCC 60.255 40.741 0.00 0.00 0.00 4.70
5264 5545 7.280876 TGGTTGTCTCTGTATTTTCATATGCTC 59.719 37.037 0.00 0.00 0.00 4.26
5265 5546 7.112122 TGGTTGTCTCTGTATTTTCATATGCT 58.888 34.615 0.00 0.00 0.00 3.79
5266 5547 7.280876 TCTGGTTGTCTCTGTATTTTCATATGC 59.719 37.037 0.00 0.00 0.00 3.14
5267 5548 8.722480 TCTGGTTGTCTCTGTATTTTCATATG 57.278 34.615 0.00 0.00 0.00 1.78
5313 5594 9.502145 CTTAAATGAGCGCTTATGAATAAAACA 57.498 29.630 16.16 2.22 0.00 2.83
5314 5595 9.716507 TCTTAAATGAGCGCTTATGAATAAAAC 57.283 29.630 16.16 0.00 0.00 2.43
5327 5608 3.062774 GGACTCAACTCTTAAATGAGCGC 59.937 47.826 0.00 0.00 43.41 5.92
5353 5637 7.108841 TCATGTTACTCCTATGTTGTACTCC 57.891 40.000 0.00 0.00 0.00 3.85
5385 5671 2.159462 GCAGCATGGCTCTCTTAAACAC 60.159 50.000 0.00 0.00 36.40 3.32
5405 5691 1.988467 GCCTTGAGAGAAAAATTGCGC 59.012 47.619 0.00 0.00 0.00 6.09
5783 6069 7.750229 TTTCTCTGCAAAGTGAAGTGATTAT 57.250 32.000 0.00 0.00 26.82 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.