Multiple sequence alignment - TraesCS5B01G202900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G202900 chr5B 100.000 3962 0 0 1 3962 369264932 369260971 0.000000e+00 7317.0
1 TraesCS5B01G202900 chr5B 94.253 174 10 0 3789 3962 609109338 609109165 2.350000e-67 267.0
2 TraesCS5B01G202900 chr5B 90.230 174 17 0 3789 3962 563928635 563928462 1.110000e-55 228.0
3 TraesCS5B01G202900 chr5B 87.857 140 14 3 1 140 683572264 683572128 1.140000e-35 161.0
4 TraesCS5B01G202900 chr5B 97.143 35 1 0 2613 2647 532932574 532932540 4.280000e-05 60.2
5 TraesCS5B01G202900 chr5D 92.977 3574 141 37 236 3767 319148282 319144777 0.000000e+00 5108.0
6 TraesCS5B01G202900 chr5D 89.286 140 14 1 1 140 308023860 308023722 1.460000e-39 174.0
7 TraesCS5B01G202900 chr5D 88.276 145 14 3 1 144 225746823 225746681 1.890000e-38 171.0
8 TraesCS5B01G202900 chr5D 97.143 35 1 0 2613 2647 438361886 438361852 4.280000e-05 60.2
9 TraesCS5B01G202900 chr5D 97.143 35 1 0 2613 2647 438387855 438387821 4.280000e-05 60.2
10 TraesCS5B01G202900 chr5A 90.896 3581 185 58 254 3767 415319848 415323354 0.000000e+00 4676.0
11 TraesCS5B01G202900 chr4B 97.126 174 5 0 3789 3962 46949281 46949454 1.080000e-75 294.0
12 TraesCS5B01G202900 chr2B 96.552 174 6 0 3789 3962 758601239 758601066 5.010000e-74 289.0
13 TraesCS5B01G202900 chr2B 94.253 174 10 0 3789 3962 797926277 797926450 2.350000e-67 267.0
14 TraesCS5B01G202900 chr2B 87.943 141 15 2 1 141 591637882 591638020 8.810000e-37 165.0
15 TraesCS5B01G202900 chr4A 95.977 174 7 0 3789 3962 691820154 691819981 2.330000e-72 283.0
16 TraesCS5B01G202900 chr4A 90.299 134 11 2 1 133 576036507 576036375 1.460000e-39 174.0
17 TraesCS5B01G202900 chr4A 87.234 141 16 2 1 141 715713704 715713842 4.100000e-35 159.0
18 TraesCS5B01G202900 chr7B 92.529 174 13 0 3789 3962 658463821 658463994 2.360000e-62 250.0
19 TraesCS5B01G202900 chr7B 87.302 63 6 2 2700 2761 658282025 658281964 1.980000e-08 71.3
20 TraesCS5B01G202900 chr3B 91.379 174 15 0 3789 3962 618460174 618460001 5.120000e-59 239.0
21 TraesCS5B01G202900 chr3B 90.000 180 18 0 3783 3962 790578759 790578938 2.380000e-57 233.0
22 TraesCS5B01G202900 chr3B 88.194 144 14 3 1 143 213705259 213705400 6.810000e-38 169.0
23 TraesCS5B01G202900 chr1A 88.652 141 15 1 1 141 249980487 249980626 1.890000e-38 171.0
24 TraesCS5B01G202900 chr2D 87.857 140 14 3 1 140 577457640 577457776 1.140000e-35 161.0
25 TraesCS5B01G202900 chr1D 76.585 205 36 11 2564 2762 399188677 399188479 7.000000e-18 102.0
26 TraesCS5B01G202900 chr1D 100.000 35 0 0 2613 2647 420856395 420856361 9.190000e-07 65.8
27 TraesCS5B01G202900 chr1B 88.889 72 8 0 2597 2668 535384587 535384516 5.450000e-14 89.8
28 TraesCS5B01G202900 chr1B 100.000 35 0 0 2613 2647 569561507 569561473 9.190000e-07 65.8
29 TraesCS5B01G202900 chr7D 87.302 63 6 2 2700 2761 587155997 587155936 1.980000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G202900 chr5B 369260971 369264932 3961 True 7317 7317 100.000 1 3962 1 chr5B.!!$R1 3961
1 TraesCS5B01G202900 chr5D 319144777 319148282 3505 True 5108 5108 92.977 236 3767 1 chr5D.!!$R3 3531
2 TraesCS5B01G202900 chr5A 415319848 415323354 3506 False 4676 4676 90.896 254 3767 1 chr5A.!!$F1 3513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
76 77 0.036164 TTGGCCGTGTGCATCTTAGT 59.964 50.000 0.00 0.00 43.89 2.24 F
763 790 0.178068 ACCATCTTGGCGCGTAGATT 59.822 50.000 17.23 4.89 42.67 2.40 F
960 1006 1.201647 GACGAGACCAACTCCATCGAA 59.798 52.381 0.00 0.00 42.18 3.71 F
2481 2532 1.548719 TCGTCCAACATCCTCGTCAAT 59.451 47.619 0.00 0.00 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1731 1782 0.396139 GAGGAGGCAATGGCAATGGA 60.396 55.000 10.05 0.0 43.71 3.41 R
2262 2313 0.450583 TGCTGTAGAAGTACGAGCGG 59.549 55.000 0.00 0.0 36.69 5.52 R
2871 2922 2.194212 GTCCTCTATCCTCGCGGCA 61.194 63.158 6.13 0.0 0.00 5.69 R
3767 3840 1.168714 GACATGGAGTTTGTGGAGCC 58.831 55.000 0.00 0.0 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 2.613026 TTTTTGTCTGTGCGAGAGGA 57.387 45.000 0.00 0.00 0.00 3.71
51 52 2.839486 TTTTGTCTGTGCGAGAGGAT 57.161 45.000 0.00 0.00 0.00 3.24
52 53 2.839486 TTTGTCTGTGCGAGAGGATT 57.161 45.000 0.00 0.00 0.00 3.01
53 54 2.839486 TTGTCTGTGCGAGAGGATTT 57.161 45.000 0.00 0.00 0.00 2.17
54 55 2.839486 TGTCTGTGCGAGAGGATTTT 57.161 45.000 0.00 0.00 0.00 1.82
55 56 3.953712 TGTCTGTGCGAGAGGATTTTA 57.046 42.857 0.00 0.00 0.00 1.52
56 57 4.471904 TGTCTGTGCGAGAGGATTTTAT 57.528 40.909 0.00 0.00 0.00 1.40
57 58 4.832248 TGTCTGTGCGAGAGGATTTTATT 58.168 39.130 0.00 0.00 0.00 1.40
58 59 5.245531 TGTCTGTGCGAGAGGATTTTATTT 58.754 37.500 0.00 0.00 0.00 1.40
59 60 5.122239 TGTCTGTGCGAGAGGATTTTATTTG 59.878 40.000 0.00 0.00 0.00 2.32
60 61 4.635765 TCTGTGCGAGAGGATTTTATTTGG 59.364 41.667 0.00 0.00 0.00 3.28
61 62 3.128589 TGTGCGAGAGGATTTTATTTGGC 59.871 43.478 0.00 0.00 0.00 4.52
62 63 2.687935 TGCGAGAGGATTTTATTTGGCC 59.312 45.455 0.00 0.00 0.00 5.36
63 64 2.287009 GCGAGAGGATTTTATTTGGCCG 60.287 50.000 0.00 0.00 0.00 6.13
64 65 2.943033 CGAGAGGATTTTATTTGGCCGT 59.057 45.455 0.00 0.00 0.00 5.68
65 66 3.242739 CGAGAGGATTTTATTTGGCCGTG 60.243 47.826 0.00 0.00 0.00 4.94
66 67 3.694566 GAGAGGATTTTATTTGGCCGTGT 59.305 43.478 0.00 0.00 0.00 4.49
67 68 3.443681 AGAGGATTTTATTTGGCCGTGTG 59.556 43.478 0.00 0.00 0.00 3.82
68 69 2.094234 AGGATTTTATTTGGCCGTGTGC 60.094 45.455 0.00 0.00 40.16 4.57
69 70 2.353208 GGATTTTATTTGGCCGTGTGCA 60.353 45.455 0.00 0.00 43.89 4.57
70 71 3.520569 GATTTTATTTGGCCGTGTGCAT 58.479 40.909 0.00 0.00 43.89 3.96
71 72 2.645730 TTTATTTGGCCGTGTGCATC 57.354 45.000 0.00 0.00 43.89 3.91
72 73 1.832883 TTATTTGGCCGTGTGCATCT 58.167 45.000 0.00 0.00 43.89 2.90
73 74 1.832883 TATTTGGCCGTGTGCATCTT 58.167 45.000 0.00 0.00 43.89 2.40
74 75 1.832883 ATTTGGCCGTGTGCATCTTA 58.167 45.000 0.00 0.00 43.89 2.10
75 76 1.164411 TTTGGCCGTGTGCATCTTAG 58.836 50.000 0.00 0.00 43.89 2.18
76 77 0.036164 TTGGCCGTGTGCATCTTAGT 59.964 50.000 0.00 0.00 43.89 2.24
77 78 0.036164 TGGCCGTGTGCATCTTAGTT 59.964 50.000 0.00 0.00 43.89 2.24
78 79 1.276705 TGGCCGTGTGCATCTTAGTTA 59.723 47.619 0.00 0.00 43.89 2.24
79 80 2.093181 TGGCCGTGTGCATCTTAGTTAT 60.093 45.455 0.00 0.00 43.89 1.89
80 81 2.287915 GGCCGTGTGCATCTTAGTTATG 59.712 50.000 0.00 0.00 43.89 1.90
90 91 5.188327 CATCTTAGTTATGCAGAGACCGA 57.812 43.478 0.00 0.00 0.00 4.69
91 92 4.902443 TCTTAGTTATGCAGAGACCGAG 57.098 45.455 0.00 0.00 0.00 4.63
92 93 4.270834 TCTTAGTTATGCAGAGACCGAGT 58.729 43.478 0.00 0.00 0.00 4.18
93 94 2.949451 AGTTATGCAGAGACCGAGTG 57.051 50.000 0.00 0.00 0.00 3.51
94 95 2.171840 AGTTATGCAGAGACCGAGTGT 58.828 47.619 0.00 0.00 0.00 3.55
95 96 3.353557 AGTTATGCAGAGACCGAGTGTA 58.646 45.455 0.00 0.00 0.00 2.90
96 97 3.762288 AGTTATGCAGAGACCGAGTGTAA 59.238 43.478 0.00 0.00 0.00 2.41
97 98 4.402793 AGTTATGCAGAGACCGAGTGTAAT 59.597 41.667 0.00 0.00 0.00 1.89
98 99 5.593095 AGTTATGCAGAGACCGAGTGTAATA 59.407 40.000 0.00 0.00 0.00 0.98
99 100 3.777465 TGCAGAGACCGAGTGTAATAC 57.223 47.619 0.00 0.00 0.00 1.89
100 101 3.353557 TGCAGAGACCGAGTGTAATACT 58.646 45.455 0.00 0.00 44.02 2.12
101 102 3.762288 TGCAGAGACCGAGTGTAATACTT 59.238 43.478 0.00 0.00 40.53 2.24
102 103 4.945543 TGCAGAGACCGAGTGTAATACTTA 59.054 41.667 0.00 0.00 40.53 2.24
103 104 5.416639 TGCAGAGACCGAGTGTAATACTTAA 59.583 40.000 0.00 0.00 40.53 1.85
104 105 6.071784 TGCAGAGACCGAGTGTAATACTTAAA 60.072 38.462 0.00 0.00 40.53 1.52
105 106 6.253083 GCAGAGACCGAGTGTAATACTTAAAC 59.747 42.308 0.00 0.00 40.53 2.01
106 107 6.750963 CAGAGACCGAGTGTAATACTTAAACC 59.249 42.308 0.00 0.00 40.53 3.27
107 108 6.662663 AGAGACCGAGTGTAATACTTAAACCT 59.337 38.462 0.00 0.00 40.53 3.50
108 109 7.178097 AGAGACCGAGTGTAATACTTAAACCTT 59.822 37.037 0.00 0.00 40.53 3.50
109 110 7.674120 AGACCGAGTGTAATACTTAAACCTTT 58.326 34.615 0.00 0.00 40.53 3.11
110 111 8.152898 AGACCGAGTGTAATACTTAAACCTTTT 58.847 33.333 0.00 0.00 40.53 2.27
111 112 9.423061 GACCGAGTGTAATACTTAAACCTTTTA 57.577 33.333 0.00 0.00 40.53 1.52
112 113 9.777297 ACCGAGTGTAATACTTAAACCTTTTAA 57.223 29.630 0.00 0.00 40.53 1.52
124 125 9.616634 ACTTAAACCTTTTAAGTAATAAAGCGC 57.383 29.630 18.22 0.00 41.77 5.92
125 126 8.969121 TTAAACCTTTTAAGTAATAAAGCGCC 57.031 30.769 2.29 0.00 35.03 6.53
126 127 5.571784 ACCTTTTAAGTAATAAAGCGCCC 57.428 39.130 2.29 0.00 35.03 6.13
127 128 4.400251 ACCTTTTAAGTAATAAAGCGCCCC 59.600 41.667 2.29 0.00 35.03 5.80
128 129 4.643334 CCTTTTAAGTAATAAAGCGCCCCT 59.357 41.667 2.29 0.00 35.03 4.79
129 130 5.126545 CCTTTTAAGTAATAAAGCGCCCCTT 59.873 40.000 2.29 0.00 35.03 3.95
130 131 6.350696 CCTTTTAAGTAATAAAGCGCCCCTTT 60.351 38.462 2.29 0.06 45.44 3.11
131 132 6.593268 TTTAAGTAATAAAGCGCCCCTTTT 57.407 33.333 2.29 0.00 40.85 2.27
132 133 4.713824 AAGTAATAAAGCGCCCCTTTTC 57.286 40.909 2.29 0.00 40.85 2.29
133 134 3.692690 AGTAATAAAGCGCCCCTTTTCA 58.307 40.909 2.29 0.00 40.85 2.69
134 135 4.278310 AGTAATAAAGCGCCCCTTTTCAT 58.722 39.130 2.29 0.00 40.85 2.57
135 136 5.442391 AGTAATAAAGCGCCCCTTTTCATA 58.558 37.500 2.29 0.00 40.85 2.15
136 137 5.889289 AGTAATAAAGCGCCCCTTTTCATAA 59.111 36.000 2.29 0.00 40.85 1.90
137 138 5.669164 AATAAAGCGCCCCTTTTCATAAA 57.331 34.783 2.29 0.00 40.85 1.40
138 139 5.669164 ATAAAGCGCCCCTTTTCATAAAA 57.331 34.783 2.29 0.00 40.85 1.52
139 140 4.344359 AAAGCGCCCCTTTTCATAAAAA 57.656 36.364 2.29 0.00 40.85 1.94
140 141 4.551702 AAGCGCCCCTTTTCATAAAAAT 57.448 36.364 2.29 0.00 34.00 1.82
141 142 4.551702 AGCGCCCCTTTTCATAAAAATT 57.448 36.364 2.29 0.00 34.00 1.82
142 143 5.669164 AGCGCCCCTTTTCATAAAAATTA 57.331 34.783 2.29 0.00 34.00 1.40
143 144 6.043854 AGCGCCCCTTTTCATAAAAATTAA 57.956 33.333 2.29 0.00 34.00 1.40
144 145 6.468543 AGCGCCCCTTTTCATAAAAATTAAA 58.531 32.000 2.29 0.00 34.00 1.52
145 146 6.937465 AGCGCCCCTTTTCATAAAAATTAAAA 59.063 30.769 2.29 0.00 34.00 1.52
146 147 7.609918 AGCGCCCCTTTTCATAAAAATTAAAAT 59.390 29.630 2.29 0.00 34.00 1.82
147 148 8.884726 GCGCCCCTTTTCATAAAAATTAAAATA 58.115 29.630 0.00 0.00 34.00 1.40
178 179 9.455847 GTACAGTATTTGTAGTATTTACCCTCG 57.544 37.037 0.00 0.00 42.75 4.63
179 180 8.297470 ACAGTATTTGTAGTATTTACCCTCGA 57.703 34.615 0.00 0.00 38.56 4.04
180 181 8.752187 ACAGTATTTGTAGTATTTACCCTCGAA 58.248 33.333 0.00 0.00 38.56 3.71
181 182 9.590451 CAGTATTTGTAGTATTTACCCTCGAAA 57.410 33.333 0.00 0.00 0.00 3.46
196 197 7.754851 ACCCTCGAAATAGTAAATTGTTTGT 57.245 32.000 0.00 0.00 0.00 2.83
197 198 8.851541 ACCCTCGAAATAGTAAATTGTTTGTA 57.148 30.769 0.00 0.00 0.00 2.41
198 199 8.943002 ACCCTCGAAATAGTAAATTGTTTGTAG 58.057 33.333 0.00 0.00 0.00 2.74
199 200 8.943002 CCCTCGAAATAGTAAATTGTTTGTAGT 58.057 33.333 0.00 0.00 0.00 2.73
209 210 9.908152 AGTAAATTGTTTGTAGTATTTCCTTGC 57.092 29.630 0.00 0.00 0.00 4.01
210 211 9.135843 GTAAATTGTTTGTAGTATTTCCTTGCC 57.864 33.333 0.00 0.00 0.00 4.52
211 212 7.539034 AATTGTTTGTAGTATTTCCTTGCCT 57.461 32.000 0.00 0.00 0.00 4.75
212 213 6.569179 TTGTTTGTAGTATTTCCTTGCCTC 57.431 37.500 0.00 0.00 0.00 4.70
213 214 5.876357 TGTTTGTAGTATTTCCTTGCCTCT 58.124 37.500 0.00 0.00 0.00 3.69
214 215 5.938125 TGTTTGTAGTATTTCCTTGCCTCTC 59.062 40.000 0.00 0.00 0.00 3.20
215 216 5.755409 TTGTAGTATTTCCTTGCCTCTCA 57.245 39.130 0.00 0.00 0.00 3.27
216 217 5.086104 TGTAGTATTTCCTTGCCTCTCAC 57.914 43.478 0.00 0.00 0.00 3.51
217 218 3.252974 AGTATTTCCTTGCCTCTCACG 57.747 47.619 0.00 0.00 0.00 4.35
218 219 1.666189 GTATTTCCTTGCCTCTCACGC 59.334 52.381 0.00 0.00 0.00 5.34
219 220 0.678048 ATTTCCTTGCCTCTCACGCC 60.678 55.000 0.00 0.00 0.00 5.68
220 221 2.748058 TTTCCTTGCCTCTCACGCCC 62.748 60.000 0.00 0.00 0.00 6.13
246 247 2.774007 CTCGCGAATGTCCATTGTTTC 58.226 47.619 11.33 0.00 0.00 2.78
248 249 1.467374 CGCGAATGTCCATTGTTTCCC 60.467 52.381 0.00 0.00 0.00 3.97
299 300 2.794910 CGATCGAGACGCAAATGGTAAT 59.205 45.455 10.26 0.00 0.00 1.89
302 303 5.051307 CGATCGAGACGCAAATGGTAATTTA 60.051 40.000 10.26 0.00 34.14 1.40
360 361 1.589993 CACTATCCAGCCACGCTCG 60.590 63.158 0.00 0.00 36.40 5.03
366 367 4.827087 CAGCCACGCTCGATGCCT 62.827 66.667 0.00 0.00 36.40 4.75
381 382 0.533531 TGCCTCCATGTGATGCGATC 60.534 55.000 0.00 0.00 37.42 3.69
463 466 1.209747 GGGAGACGGGTTAAGCTGATT 59.790 52.381 20.03 7.28 0.00 2.57
606 630 2.578369 GATTCGTGCAGCGTATCGT 58.422 52.632 10.61 0.00 37.57 3.73
622 646 0.250727 TCGTCCCCTTTCCTGCAAAG 60.251 55.000 0.00 0.00 41.30 2.77
655 679 1.767759 CTTCCATTCCACACATCCCC 58.232 55.000 0.00 0.00 0.00 4.81
659 683 1.063792 CCATTCCACACATCCCCATCA 60.064 52.381 0.00 0.00 0.00 3.07
660 684 2.425247 CCATTCCACACATCCCCATCAT 60.425 50.000 0.00 0.00 0.00 2.45
661 685 3.181430 CCATTCCACACATCCCCATCATA 60.181 47.826 0.00 0.00 0.00 2.15
693 720 2.358267 AGACACGGACGACTATTCCATC 59.642 50.000 0.00 0.00 31.94 3.51
694 721 1.065102 ACACGGACGACTATTCCATCG 59.935 52.381 0.00 0.00 43.97 3.84
695 722 1.332686 CACGGACGACTATTCCATCGA 59.667 52.381 0.00 0.00 40.86 3.59
696 723 2.019249 ACGGACGACTATTCCATCGAA 58.981 47.619 0.00 0.00 40.86 3.71
697 724 2.424601 ACGGACGACTATTCCATCGAAA 59.575 45.455 0.00 0.00 40.86 3.46
698 725 3.119388 ACGGACGACTATTCCATCGAAAA 60.119 43.478 0.00 0.00 40.86 2.29
699 726 3.242248 CGGACGACTATTCCATCGAAAAC 59.758 47.826 0.00 0.00 40.86 2.43
700 727 4.430908 GGACGACTATTCCATCGAAAACT 58.569 43.478 0.00 0.00 40.86 2.66
701 728 5.585390 GGACGACTATTCCATCGAAAACTA 58.415 41.667 0.00 0.00 40.86 2.24
702 729 6.214399 GGACGACTATTCCATCGAAAACTAT 58.786 40.000 0.00 0.00 40.86 2.12
703 730 6.700520 GGACGACTATTCCATCGAAAACTATT 59.299 38.462 0.00 0.00 40.86 1.73
704 731 7.096147 GGACGACTATTCCATCGAAAACTATTC 60.096 40.741 0.00 0.00 40.86 1.75
705 732 6.700520 ACGACTATTCCATCGAAAACTATTCC 59.299 38.462 0.00 0.00 40.86 3.01
706 733 6.700081 CGACTATTCCATCGAAAACTATTCCA 59.300 38.462 0.00 0.00 40.86 3.53
707 734 7.385205 CGACTATTCCATCGAAAACTATTCCAT 59.615 37.037 0.00 0.00 40.86 3.41
723 750 2.764128 ATGGCTCCCGGTCGATGT 60.764 61.111 0.00 0.00 0.00 3.06
730 757 2.646175 CCCGGTCGATGTGTGGAGT 61.646 63.158 0.00 0.00 0.00 3.85
737 764 1.142185 CGATGTGTGGAGTGCTAGCG 61.142 60.000 10.77 0.00 0.00 4.26
748 775 2.029666 GCTAGCGGCATCGACCAT 59.970 61.111 0.00 0.00 41.35 3.55
749 776 2.024319 GCTAGCGGCATCGACCATC 61.024 63.158 0.00 0.00 41.35 3.51
763 790 0.178068 ACCATCTTGGCGCGTAGATT 59.822 50.000 17.23 4.89 42.67 2.40
799 826 3.196901 CCTATAATATAGCCGCACACCCA 59.803 47.826 1.81 0.00 0.00 4.51
818 848 1.972660 ATTCCACCGAGGGCTAGCAC 61.973 60.000 18.24 14.32 38.24 4.40
847 880 9.881529 GATTAAGATTAGTAGGAGTAGTTCGTG 57.118 37.037 0.00 0.00 0.00 4.35
850 883 1.472188 AGTAGGAGTAGTTCGTGGCC 58.528 55.000 0.00 0.00 0.00 5.36
861 894 2.094854 AGTTCGTGGCCGAGTACTTAAG 60.095 50.000 0.00 0.00 45.24 1.85
960 1006 1.201647 GACGAGACCAACTCCATCGAA 59.798 52.381 0.00 0.00 42.18 3.71
1046 1097 1.913451 CTCCTGCTTCTCGTCGTCGT 61.913 60.000 1.33 0.00 38.33 4.34
1404 1455 2.357034 GACAACAAGCTCGCCGGA 60.357 61.111 5.05 0.00 0.00 5.14
1871 1922 3.683822 GTGATCTTCTTCCTGCTCTGTTG 59.316 47.826 0.00 0.00 0.00 3.33
1986 2037 1.807573 GGAGAAGAGCGGCGTGAAG 60.808 63.158 9.37 0.00 0.00 3.02
2214 2265 2.647158 GGAGAAGGAGTTCCGCGGT 61.647 63.158 27.15 5.51 42.08 5.68
2262 2313 3.050275 GACAACCTGGTGCCGCTC 61.050 66.667 0.00 0.00 0.00 5.03
2481 2532 1.548719 TCGTCCAACATCCTCGTCAAT 59.451 47.619 0.00 0.00 0.00 2.57
2903 2954 4.796231 GGACATCGTCGGCAGCGT 62.796 66.667 0.00 0.00 32.65 5.07
2955 3006 3.186047 GTGTCCGCCGACCATTCG 61.186 66.667 2.66 0.00 45.44 3.34
3004 3055 4.438744 GGTTCATTTCATTTCCGTAGCTGG 60.439 45.833 0.00 0.00 0.00 4.85
3199 3263 0.469892 AAGTTTCCCCAAGCACCCAG 60.470 55.000 0.00 0.00 0.00 4.45
3248 3312 3.152341 CCAAATGGAGACTGTTTCAGCT 58.848 45.455 0.54 0.00 37.39 4.24
3249 3313 4.326826 CCAAATGGAGACTGTTTCAGCTA 58.673 43.478 0.54 0.00 37.39 3.32
3430 3494 1.620819 AGAGAAGACGGCAATCACAGT 59.379 47.619 0.00 0.00 0.00 3.55
3569 3634 2.359214 TGACCGATGCTGTCTAGATCAC 59.641 50.000 0.00 0.00 33.83 3.06
3617 3683 2.938956 AAGTTCAGTTGACCTCCCTG 57.061 50.000 0.00 0.00 0.00 4.45
3618 3684 2.103153 AGTTCAGTTGACCTCCCTGA 57.897 50.000 0.00 0.00 33.59 3.86
3626 3692 1.390926 GACCTCCCTGACCCTGGTA 59.609 63.158 0.00 0.00 0.00 3.25
3627 3693 0.688087 GACCTCCCTGACCCTGGTAG 60.688 65.000 0.00 0.00 0.00 3.18
3628 3694 1.392534 CCTCCCTGACCCTGGTAGT 59.607 63.158 0.00 0.00 0.00 2.73
3629 3695 0.635009 CCTCCCTGACCCTGGTAGTA 59.365 60.000 0.00 0.00 0.00 1.82
3630 3696 1.688627 CCTCCCTGACCCTGGTAGTAC 60.689 61.905 0.00 0.00 0.00 2.73
3631 3697 0.337428 TCCCTGACCCTGGTAGTACC 59.663 60.000 12.80 12.80 39.22 3.34
3633 3699 1.041447 CCTGACCCTGGTAGTACCCG 61.041 65.000 16.91 10.30 37.50 5.28
3634 3700 1.000739 TGACCCTGGTAGTACCCGG 59.999 63.158 20.19 20.19 41.74 5.73
3637 3703 2.445274 CCTGGTAGTACCCGGGGG 60.445 72.222 27.92 9.91 45.95 5.40
3638 3704 2.691732 CTGGTAGTACCCGGGGGA 59.308 66.667 27.92 5.72 37.50 4.81
3639 3705 1.759692 CTGGTAGTACCCGGGGGAC 60.760 68.421 27.92 21.66 37.50 4.46
3640 3706 2.834968 GGTAGTACCCGGGGGACG 60.835 72.222 27.92 0.00 43.80 4.79
3695 3761 3.938963 TCTGAGCAACGAAAAGTTTCTGT 59.061 39.130 0.00 0.14 42.02 3.41
3750 3823 3.485216 CGTTTTGATGCTATCCAACGACC 60.485 47.826 16.74 0.00 42.72 4.79
3756 3829 0.032952 GCTATCCAACGACCGGCATA 59.967 55.000 0.00 0.00 0.00 3.14
3767 3840 3.119990 ACGACCGGCATACAAATTTTGAG 60.120 43.478 15.81 6.42 0.00 3.02
3768 3841 3.730662 CGACCGGCATACAAATTTTGAGG 60.731 47.826 15.81 10.27 0.00 3.86
3769 3842 2.094234 ACCGGCATACAAATTTTGAGGC 60.094 45.455 15.81 13.86 0.00 4.70
3770 3843 2.166254 CCGGCATACAAATTTTGAGGCT 59.834 45.455 15.81 0.00 0.00 4.58
3771 3844 3.438360 CGGCATACAAATTTTGAGGCTC 58.562 45.455 15.81 7.79 0.00 4.70
3772 3845 3.734902 CGGCATACAAATTTTGAGGCTCC 60.735 47.826 15.81 8.54 0.00 4.70
3773 3846 3.195396 GGCATACAAATTTTGAGGCTCCA 59.805 43.478 15.81 0.00 0.00 3.86
3774 3847 4.176271 GCATACAAATTTTGAGGCTCCAC 58.824 43.478 15.81 0.00 0.00 4.02
3775 3848 4.321899 GCATACAAATTTTGAGGCTCCACA 60.322 41.667 15.81 0.00 0.00 4.17
3776 3849 5.782047 CATACAAATTTTGAGGCTCCACAA 58.218 37.500 15.81 2.23 0.00 3.33
3777 3850 4.751767 ACAAATTTTGAGGCTCCACAAA 57.248 36.364 15.81 8.89 35.40 2.83
3778 3851 4.441792 ACAAATTTTGAGGCTCCACAAAC 58.558 39.130 15.81 0.00 36.54 2.93
3779 3852 4.162131 ACAAATTTTGAGGCTCCACAAACT 59.838 37.500 15.81 3.97 36.54 2.66
3780 3853 4.590850 AATTTTGAGGCTCCACAAACTC 57.409 40.909 12.86 0.00 36.54 3.01
3781 3854 1.981256 TTTGAGGCTCCACAAACTCC 58.019 50.000 12.86 0.00 33.06 3.85
3782 3855 0.843309 TTGAGGCTCCACAAACTCCA 59.157 50.000 12.86 0.00 0.00 3.86
3783 3856 1.067295 TGAGGCTCCACAAACTCCAT 58.933 50.000 12.86 0.00 0.00 3.41
3784 3857 1.271543 TGAGGCTCCACAAACTCCATG 60.272 52.381 12.86 0.00 0.00 3.66
3785 3858 0.773644 AGGCTCCACAAACTCCATGT 59.226 50.000 0.00 0.00 0.00 3.21
3786 3859 1.168714 GGCTCCACAAACTCCATGTC 58.831 55.000 0.00 0.00 0.00 3.06
3787 3860 1.168714 GCTCCACAAACTCCATGTCC 58.831 55.000 0.00 0.00 0.00 4.02
3788 3861 1.545428 GCTCCACAAACTCCATGTCCA 60.545 52.381 0.00 0.00 0.00 4.02
3789 3862 2.881403 GCTCCACAAACTCCATGTCCAT 60.881 50.000 0.00 0.00 0.00 3.41
3790 3863 2.751259 CTCCACAAACTCCATGTCCATG 59.249 50.000 0.14 0.14 38.51 3.66
3791 3864 2.374839 TCCACAAACTCCATGTCCATGA 59.625 45.455 8.82 0.00 41.20 3.07
3792 3865 2.489329 CCACAAACTCCATGTCCATGAC 59.511 50.000 8.82 0.00 41.20 3.06
3793 3866 3.148412 CACAAACTCCATGTCCATGACA 58.852 45.455 8.82 0.00 46.90 3.58
3794 3867 3.058016 CACAAACTCCATGTCCATGACAC 60.058 47.826 8.82 0.00 45.65 3.67
3795 3868 2.489329 CAAACTCCATGTCCATGACACC 59.511 50.000 8.82 0.00 45.65 4.16
3796 3869 1.361204 ACTCCATGTCCATGACACCA 58.639 50.000 8.82 0.00 45.65 4.17
3797 3870 1.918262 ACTCCATGTCCATGACACCAT 59.082 47.619 8.82 0.00 45.65 3.55
3798 3871 2.092753 ACTCCATGTCCATGACACCATC 60.093 50.000 8.82 0.00 45.65 3.51
3799 3872 2.172082 CTCCATGTCCATGACACCATCT 59.828 50.000 8.82 0.00 45.65 2.90
3800 3873 2.577563 TCCATGTCCATGACACCATCTT 59.422 45.455 8.82 0.00 45.65 2.40
3801 3874 3.010472 TCCATGTCCATGACACCATCTTT 59.990 43.478 8.82 0.00 45.65 2.52
3802 3875 3.379372 CCATGTCCATGACACCATCTTTC 59.621 47.826 8.82 0.00 45.65 2.62
3803 3876 4.267536 CATGTCCATGACACCATCTTTCT 58.732 43.478 0.87 0.00 45.65 2.52
3804 3877 3.678289 TGTCCATGACACCATCTTTCTG 58.322 45.455 0.00 0.00 37.67 3.02
3805 3878 3.327464 TGTCCATGACACCATCTTTCTGA 59.673 43.478 0.00 0.00 37.67 3.27
3806 3879 4.019051 TGTCCATGACACCATCTTTCTGAT 60.019 41.667 0.00 0.00 37.67 2.90
3807 3880 4.574013 GTCCATGACACCATCTTTCTGATC 59.426 45.833 0.00 0.00 30.58 2.92
3808 3881 4.225717 TCCATGACACCATCTTTCTGATCA 59.774 41.667 0.00 0.00 32.05 2.92
3809 3882 4.945543 CCATGACACCATCTTTCTGATCAA 59.054 41.667 0.00 0.00 32.05 2.57
3810 3883 5.416639 CCATGACACCATCTTTCTGATCAAA 59.583 40.000 0.00 0.00 32.05 2.69
3811 3884 6.404403 CCATGACACCATCTTTCTGATCAAAG 60.404 42.308 0.00 0.00 35.06 2.77
3812 3885 5.868454 TGACACCATCTTTCTGATCAAAGA 58.132 37.500 11.34 11.34 44.59 2.52
3821 3894 7.250032 TCTTTCTGATCAAAGATGAGGAAGA 57.750 36.000 11.58 11.58 37.45 2.87
3822 3895 7.683578 TCTTTCTGATCAAAGATGAGGAAGAA 58.316 34.615 12.79 3.43 37.45 2.52
3823 3896 8.159447 TCTTTCTGATCAAAGATGAGGAAGAAA 58.841 33.333 12.79 9.15 37.45 2.52
3824 3897 7.918536 TTCTGATCAAAGATGAGGAAGAAAG 57.081 36.000 0.00 0.00 39.39 2.62
3825 3898 7.013823 TCTGATCAAAGATGAGGAAGAAAGT 57.986 36.000 0.00 0.00 39.39 2.66
3826 3899 6.877855 TCTGATCAAAGATGAGGAAGAAAGTG 59.122 38.462 0.00 0.00 39.39 3.16
3827 3900 6.537355 TGATCAAAGATGAGGAAGAAAGTGT 58.463 36.000 0.00 0.00 39.39 3.55
3828 3901 6.429078 TGATCAAAGATGAGGAAGAAAGTGTG 59.571 38.462 0.00 0.00 39.39 3.82
3829 3902 5.928976 TCAAAGATGAGGAAGAAAGTGTGA 58.071 37.500 0.00 0.00 0.00 3.58
3830 3903 6.356556 TCAAAGATGAGGAAGAAAGTGTGAA 58.643 36.000 0.00 0.00 0.00 3.18
3831 3904 6.828273 TCAAAGATGAGGAAGAAAGTGTGAAA 59.172 34.615 0.00 0.00 0.00 2.69
3832 3905 7.339212 TCAAAGATGAGGAAGAAAGTGTGAAAA 59.661 33.333 0.00 0.00 0.00 2.29
3833 3906 7.645058 AAGATGAGGAAGAAAGTGTGAAAAA 57.355 32.000 0.00 0.00 0.00 1.94
3834 3907 7.032377 AGATGAGGAAGAAAGTGTGAAAAAC 57.968 36.000 0.00 0.00 0.00 2.43
3835 3908 5.576447 TGAGGAAGAAAGTGTGAAAAACC 57.424 39.130 0.00 0.00 0.00 3.27
3836 3909 5.261216 TGAGGAAGAAAGTGTGAAAAACCT 58.739 37.500 0.00 0.00 0.00 3.50
3837 3910 5.357032 TGAGGAAGAAAGTGTGAAAAACCTC 59.643 40.000 0.00 0.00 40.06 3.85
3838 3911 5.261216 AGGAAGAAAGTGTGAAAAACCTCA 58.739 37.500 0.00 0.00 0.00 3.86
3839 3912 5.714806 AGGAAGAAAGTGTGAAAAACCTCAA 59.285 36.000 0.00 0.00 0.00 3.02
3840 3913 6.210584 AGGAAGAAAGTGTGAAAAACCTCAAA 59.789 34.615 0.00 0.00 0.00 2.69
3841 3914 7.041721 GGAAGAAAGTGTGAAAAACCTCAAAT 58.958 34.615 0.00 0.00 0.00 2.32
3842 3915 7.549134 GGAAGAAAGTGTGAAAAACCTCAAATT 59.451 33.333 0.00 0.00 0.00 1.82
3843 3916 8.846943 AAGAAAGTGTGAAAAACCTCAAATTT 57.153 26.923 0.00 0.00 0.00 1.82
3844 3917 9.936759 AAGAAAGTGTGAAAAACCTCAAATTTA 57.063 25.926 0.00 0.00 0.00 1.40
3853 3926 9.250246 TGAAAAACCTCAAATTTATACTAGGGG 57.750 33.333 0.00 0.00 0.00 4.79
3854 3927 7.655521 AAAACCTCAAATTTATACTAGGGGC 57.344 36.000 0.00 0.00 0.00 5.80
3855 3928 6.592207 AACCTCAAATTTATACTAGGGGCT 57.408 37.500 0.00 0.00 0.00 5.19
3856 3929 6.592207 ACCTCAAATTTATACTAGGGGCTT 57.408 37.500 0.00 0.00 0.00 4.35
3857 3930 6.981737 ACCTCAAATTTATACTAGGGGCTTT 58.018 36.000 0.00 0.00 0.00 3.51
3858 3931 7.419203 ACCTCAAATTTATACTAGGGGCTTTT 58.581 34.615 0.00 0.00 0.00 2.27
3859 3932 7.342026 ACCTCAAATTTATACTAGGGGCTTTTG 59.658 37.037 0.00 0.00 0.00 2.44
3860 3933 7.559897 CCTCAAATTTATACTAGGGGCTTTTGA 59.440 37.037 0.00 2.36 0.00 2.69
3861 3934 8.887264 TCAAATTTATACTAGGGGCTTTTGAA 57.113 30.769 0.00 0.00 30.23 2.69
3862 3935 8.745590 TCAAATTTATACTAGGGGCTTTTGAAC 58.254 33.333 0.00 0.00 30.23 3.18
3863 3936 8.527810 CAAATTTATACTAGGGGCTTTTGAACA 58.472 33.333 0.00 0.00 0.00 3.18
3864 3937 7.881775 ATTTATACTAGGGGCTTTTGAACAG 57.118 36.000 0.00 0.00 0.00 3.16
3865 3938 6.630203 TTATACTAGGGGCTTTTGAACAGA 57.370 37.500 0.00 0.00 0.00 3.41
3866 3939 5.717119 ATACTAGGGGCTTTTGAACAGAT 57.283 39.130 0.00 0.00 0.00 2.90
3867 3940 3.690460 ACTAGGGGCTTTTGAACAGATG 58.310 45.455 0.00 0.00 0.00 2.90
3868 3941 2.683211 AGGGGCTTTTGAACAGATGT 57.317 45.000 0.00 0.00 0.00 3.06
3869 3942 2.519013 AGGGGCTTTTGAACAGATGTC 58.481 47.619 0.00 0.00 0.00 3.06
3870 3943 2.108952 AGGGGCTTTTGAACAGATGTCT 59.891 45.455 0.00 0.00 0.00 3.41
3872 3945 3.149196 GGGCTTTTGAACAGATGTCTGA 58.851 45.455 16.41 0.00 46.59 3.27
3873 3946 3.760684 GGGCTTTTGAACAGATGTCTGAT 59.239 43.478 16.41 4.74 46.59 2.90
3874 3947 4.219288 GGGCTTTTGAACAGATGTCTGATT 59.781 41.667 16.41 7.17 46.59 2.57
3875 3948 5.279156 GGGCTTTTGAACAGATGTCTGATTT 60.279 40.000 16.41 1.61 46.59 2.17
3876 3949 5.632347 GGCTTTTGAACAGATGTCTGATTTG 59.368 40.000 16.41 2.14 46.59 2.32
3877 3950 6.441274 GCTTTTGAACAGATGTCTGATTTGA 58.559 36.000 16.41 0.00 46.59 2.69
3878 3951 6.919662 GCTTTTGAACAGATGTCTGATTTGAA 59.080 34.615 16.41 0.00 46.59 2.69
3879 3952 7.436080 GCTTTTGAACAGATGTCTGATTTGAAA 59.564 33.333 16.41 5.67 46.59 2.69
3880 3953 9.304731 CTTTTGAACAGATGTCTGATTTGAAAA 57.695 29.630 16.41 11.84 46.59 2.29
3881 3954 9.820725 TTTTGAACAGATGTCTGATTTGAAAAT 57.179 25.926 16.41 0.00 46.59 1.82
3907 3980 8.854614 AAACTTTCATAAGAGTGAGCTAATGT 57.145 30.769 0.00 0.00 35.30 2.71
3908 3981 8.854614 AACTTTCATAAGAGTGAGCTAATGTT 57.145 30.769 0.00 0.00 35.30 2.71
3909 3982 8.261492 ACTTTCATAAGAGTGAGCTAATGTTG 57.739 34.615 0.00 0.00 35.30 3.33
3910 3983 7.880195 ACTTTCATAAGAGTGAGCTAATGTTGT 59.120 33.333 0.00 0.00 35.30 3.32
3911 3984 8.621532 TTTCATAAGAGTGAGCTAATGTTGTT 57.378 30.769 0.00 0.00 0.00 2.83
3912 3985 8.621532 TTCATAAGAGTGAGCTAATGTTGTTT 57.378 30.769 0.00 0.00 0.00 2.83
3913 3986 8.032952 TCATAAGAGTGAGCTAATGTTGTTTG 57.967 34.615 0.00 0.00 0.00 2.93
3914 3987 5.695851 AAGAGTGAGCTAATGTTGTTTGG 57.304 39.130 0.00 0.00 0.00 3.28
3915 3988 4.973168 AGAGTGAGCTAATGTTGTTTGGA 58.027 39.130 0.00 0.00 0.00 3.53
3916 3989 5.376625 AGAGTGAGCTAATGTTGTTTGGAA 58.623 37.500 0.00 0.00 0.00 3.53
3917 3990 5.827797 AGAGTGAGCTAATGTTGTTTGGAAA 59.172 36.000 0.00 0.00 0.00 3.13
3918 3991 6.016777 AGAGTGAGCTAATGTTGTTTGGAAAG 60.017 38.462 0.00 0.00 0.00 2.62
3919 3992 5.010012 AGTGAGCTAATGTTGTTTGGAAAGG 59.990 40.000 0.00 0.00 0.00 3.11
3920 3993 4.237724 GAGCTAATGTTGTTTGGAAAGGC 58.762 43.478 0.00 0.00 0.00 4.35
3921 3994 3.897505 AGCTAATGTTGTTTGGAAAGGCT 59.102 39.130 0.00 0.00 0.00 4.58
3922 3995 5.076873 AGCTAATGTTGTTTGGAAAGGCTA 58.923 37.500 0.00 0.00 0.00 3.93
3923 3996 5.538433 AGCTAATGTTGTTTGGAAAGGCTAA 59.462 36.000 0.00 0.00 0.00 3.09
3924 3997 6.041523 AGCTAATGTTGTTTGGAAAGGCTAAA 59.958 34.615 0.00 0.00 0.00 1.85
3925 3998 6.366061 GCTAATGTTGTTTGGAAAGGCTAAAG 59.634 38.462 0.00 0.00 0.00 1.85
3926 3999 6.478512 AATGTTGTTTGGAAAGGCTAAAGA 57.521 33.333 0.00 0.00 0.00 2.52
3927 4000 5.923733 TGTTGTTTGGAAAGGCTAAAGAA 57.076 34.783 0.00 0.00 29.75 2.52
3928 4001 6.287589 TGTTGTTTGGAAAGGCTAAAGAAA 57.712 33.333 0.00 0.00 33.24 2.52
3929 4002 6.702329 TGTTGTTTGGAAAGGCTAAAGAAAA 58.298 32.000 0.00 0.00 33.24 2.29
3930 4003 7.162082 TGTTGTTTGGAAAGGCTAAAGAAAAA 58.838 30.769 0.00 0.00 33.24 1.94
3931 4004 7.118535 TGTTGTTTGGAAAGGCTAAAGAAAAAC 59.881 33.333 0.00 0.00 33.24 2.43
3932 4005 6.702329 TGTTTGGAAAGGCTAAAGAAAAACA 58.298 32.000 8.25 8.25 33.85 2.83
3933 4006 7.162082 TGTTTGGAAAGGCTAAAGAAAAACAA 58.838 30.769 9.34 0.00 33.46 2.83
3934 4007 7.826744 TGTTTGGAAAGGCTAAAGAAAAACAAT 59.173 29.630 9.34 0.00 33.46 2.71
3935 4008 8.673711 GTTTGGAAAGGCTAAAGAAAAACAATT 58.326 29.630 0.00 0.00 0.00 2.32
3936 4009 7.784633 TGGAAAGGCTAAAGAAAAACAATTG 57.215 32.000 3.24 3.24 0.00 2.32
3937 4010 6.259829 TGGAAAGGCTAAAGAAAAACAATTGC 59.740 34.615 5.05 0.00 0.00 3.56
3938 4011 6.483307 GGAAAGGCTAAAGAAAAACAATTGCT 59.517 34.615 5.05 0.00 0.00 3.91
3939 4012 7.012327 GGAAAGGCTAAAGAAAAACAATTGCTT 59.988 33.333 5.05 0.00 0.00 3.91
3940 4013 7.864108 AAGGCTAAAGAAAAACAATTGCTTT 57.136 28.000 5.05 9.01 32.25 3.51
3941 4014 8.956533 AAGGCTAAAGAAAAACAATTGCTTTA 57.043 26.923 5.05 9.64 30.91 1.85
3942 4015 8.365399 AGGCTAAAGAAAAACAATTGCTTTAC 57.635 30.769 5.05 6.13 30.91 2.01
3943 4016 7.441157 AGGCTAAAGAAAAACAATTGCTTTACC 59.559 33.333 5.05 12.92 30.91 2.85
3944 4017 7.225734 GGCTAAAGAAAAACAATTGCTTTACCA 59.774 33.333 5.05 0.00 30.91 3.25
3945 4018 8.275632 GCTAAAGAAAAACAATTGCTTTACCAG 58.724 33.333 5.05 3.09 30.91 4.00
3946 4019 7.552458 AAAGAAAAACAATTGCTTTACCAGG 57.448 32.000 5.05 0.00 0.00 4.45
3947 4020 6.478512 AGAAAAACAATTGCTTTACCAGGA 57.521 33.333 5.05 0.00 0.00 3.86
3948 4021 6.883744 AGAAAAACAATTGCTTTACCAGGAA 58.116 32.000 5.05 0.00 37.22 3.36
3949 4022 7.334858 AGAAAAACAATTGCTTTACCAGGAAA 58.665 30.769 5.05 0.00 36.24 3.13
3950 4023 7.992608 AGAAAAACAATTGCTTTACCAGGAAAT 59.007 29.630 5.05 0.00 36.24 2.17
3951 4024 9.267084 GAAAAACAATTGCTTTACCAGGAAATA 57.733 29.630 5.05 0.00 36.24 1.40
3952 4025 8.601845 AAAACAATTGCTTTACCAGGAAATAC 57.398 30.769 5.05 0.00 36.24 1.89
3953 4026 7.539034 AACAATTGCTTTACCAGGAAATACT 57.461 32.000 5.05 0.00 36.24 2.12
3954 4027 6.924111 ACAATTGCTTTACCAGGAAATACTG 58.076 36.000 5.05 0.00 36.24 2.74
3955 4028 6.719370 ACAATTGCTTTACCAGGAAATACTGA 59.281 34.615 5.05 0.00 40.97 3.41
3956 4029 6.759497 ATTGCTTTACCAGGAAATACTGAC 57.241 37.500 0.00 0.00 40.97 3.51
3957 4030 5.499004 TGCTTTACCAGGAAATACTGACT 57.501 39.130 0.00 0.00 40.97 3.41
3958 4031 5.876357 TGCTTTACCAGGAAATACTGACTT 58.124 37.500 0.00 0.00 40.97 3.01
3959 4032 5.705441 TGCTTTACCAGGAAATACTGACTTG 59.295 40.000 0.00 0.00 40.97 3.16
3960 4033 5.392057 GCTTTACCAGGAAATACTGACTTGC 60.392 44.000 0.00 0.00 40.97 4.01
3961 4034 3.788227 ACCAGGAAATACTGACTTGCA 57.212 42.857 0.00 0.00 40.97 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.613026 TCCTCTCGCACAGACAAAAA 57.387 45.000 0.00 0.00 0.00 1.94
32 33 2.839486 ATCCTCTCGCACAGACAAAA 57.161 45.000 0.00 0.00 0.00 2.44
33 34 2.839486 AATCCTCTCGCACAGACAAA 57.161 45.000 0.00 0.00 0.00 2.83
34 35 2.839486 AAATCCTCTCGCACAGACAA 57.161 45.000 0.00 0.00 0.00 3.18
35 36 2.839486 AAAATCCTCTCGCACAGACA 57.161 45.000 0.00 0.00 0.00 3.41
36 37 5.447818 CCAAATAAAATCCTCTCGCACAGAC 60.448 44.000 0.00 0.00 0.00 3.51
37 38 4.635765 CCAAATAAAATCCTCTCGCACAGA 59.364 41.667 0.00 0.00 0.00 3.41
38 39 4.731773 GCCAAATAAAATCCTCTCGCACAG 60.732 45.833 0.00 0.00 0.00 3.66
39 40 3.128589 GCCAAATAAAATCCTCTCGCACA 59.871 43.478 0.00 0.00 0.00 4.57
40 41 3.489229 GGCCAAATAAAATCCTCTCGCAC 60.489 47.826 0.00 0.00 0.00 5.34
41 42 2.687935 GGCCAAATAAAATCCTCTCGCA 59.312 45.455 0.00 0.00 0.00 5.10
42 43 2.287009 CGGCCAAATAAAATCCTCTCGC 60.287 50.000 2.24 0.00 0.00 5.03
43 44 2.943033 ACGGCCAAATAAAATCCTCTCG 59.057 45.455 2.24 0.00 0.00 4.04
44 45 3.694566 ACACGGCCAAATAAAATCCTCTC 59.305 43.478 2.24 0.00 0.00 3.20
45 46 3.443681 CACACGGCCAAATAAAATCCTCT 59.556 43.478 2.24 0.00 0.00 3.69
46 47 3.769536 CACACGGCCAAATAAAATCCTC 58.230 45.455 2.24 0.00 0.00 3.71
47 48 2.094234 GCACACGGCCAAATAAAATCCT 60.094 45.455 2.24 0.00 36.11 3.24
48 49 2.267426 GCACACGGCCAAATAAAATCC 58.733 47.619 2.24 0.00 36.11 3.01
49 50 2.953020 TGCACACGGCCAAATAAAATC 58.047 42.857 2.24 0.00 43.89 2.17
50 51 3.195396 AGATGCACACGGCCAAATAAAAT 59.805 39.130 2.24 0.00 43.89 1.82
51 52 2.560542 AGATGCACACGGCCAAATAAAA 59.439 40.909 2.24 0.00 43.89 1.52
52 53 2.166829 AGATGCACACGGCCAAATAAA 58.833 42.857 2.24 0.00 43.89 1.40
53 54 1.832883 AGATGCACACGGCCAAATAA 58.167 45.000 2.24 0.00 43.89 1.40
54 55 1.832883 AAGATGCACACGGCCAAATA 58.167 45.000 2.24 0.00 43.89 1.40
55 56 1.745087 CTAAGATGCACACGGCCAAAT 59.255 47.619 2.24 0.00 43.89 2.32
56 57 1.164411 CTAAGATGCACACGGCCAAA 58.836 50.000 2.24 0.00 43.89 3.28
57 58 0.036164 ACTAAGATGCACACGGCCAA 59.964 50.000 2.24 0.00 43.89 4.52
58 59 0.036164 AACTAAGATGCACACGGCCA 59.964 50.000 2.24 0.00 43.89 5.36
59 60 2.018542 TAACTAAGATGCACACGGCC 57.981 50.000 0.00 0.00 43.89 6.13
60 61 3.592381 CATAACTAAGATGCACACGGC 57.408 47.619 0.00 0.00 45.13 5.68
68 69 5.188327 TCGGTCTCTGCATAACTAAGATG 57.812 43.478 0.00 0.00 0.00 2.90
69 70 4.890581 ACTCGGTCTCTGCATAACTAAGAT 59.109 41.667 0.00 0.00 0.00 2.40
70 71 4.096532 CACTCGGTCTCTGCATAACTAAGA 59.903 45.833 0.00 0.00 0.00 2.10
71 72 4.142359 ACACTCGGTCTCTGCATAACTAAG 60.142 45.833 0.00 0.00 0.00 2.18
72 73 3.762288 ACACTCGGTCTCTGCATAACTAA 59.238 43.478 0.00 0.00 0.00 2.24
73 74 3.353557 ACACTCGGTCTCTGCATAACTA 58.646 45.455 0.00 0.00 0.00 2.24
74 75 2.171840 ACACTCGGTCTCTGCATAACT 58.828 47.619 0.00 0.00 0.00 2.24
75 76 2.656560 ACACTCGGTCTCTGCATAAC 57.343 50.000 0.00 0.00 0.00 1.89
76 77 5.593095 AGTATTACACTCGGTCTCTGCATAA 59.407 40.000 0.00 0.00 28.33 1.90
77 78 5.131067 AGTATTACACTCGGTCTCTGCATA 58.869 41.667 0.00 0.00 28.33 3.14
78 79 3.954904 AGTATTACACTCGGTCTCTGCAT 59.045 43.478 0.00 0.00 28.33 3.96
79 80 3.353557 AGTATTACACTCGGTCTCTGCA 58.646 45.455 0.00 0.00 28.33 4.41
80 81 4.373348 AAGTATTACACTCGGTCTCTGC 57.627 45.455 0.00 0.00 36.04 4.26
81 82 6.750963 GGTTTAAGTATTACACTCGGTCTCTG 59.249 42.308 0.00 0.00 36.04 3.35
82 83 6.662663 AGGTTTAAGTATTACACTCGGTCTCT 59.337 38.462 0.00 0.00 36.04 3.10
83 84 6.861144 AGGTTTAAGTATTACACTCGGTCTC 58.139 40.000 0.00 0.00 36.04 3.36
84 85 6.847421 AGGTTTAAGTATTACACTCGGTCT 57.153 37.500 0.00 0.00 36.04 3.85
85 86 7.895975 AAAGGTTTAAGTATTACACTCGGTC 57.104 36.000 0.00 0.00 36.04 4.79
86 87 9.777297 TTAAAAGGTTTAAGTATTACACTCGGT 57.223 29.630 0.00 0.00 36.04 4.69
98 99 9.616634 GCGCTTTATTACTTAAAAGGTTTAAGT 57.383 29.630 22.74 22.74 44.59 2.24
99 100 9.069078 GGCGCTTTATTACTTAAAAGGTTTAAG 57.931 33.333 7.64 15.59 37.84 1.85
100 101 8.028354 GGGCGCTTTATTACTTAAAAGGTTTAA 58.972 33.333 7.64 0.00 34.07 1.52
101 102 7.362834 GGGGCGCTTTATTACTTAAAAGGTTTA 60.363 37.037 7.64 0.00 34.07 2.01
102 103 6.392354 GGGCGCTTTATTACTTAAAAGGTTT 58.608 36.000 7.64 0.00 34.07 3.27
103 104 5.105635 GGGGCGCTTTATTACTTAAAAGGTT 60.106 40.000 7.64 0.00 34.07 3.50
104 105 4.400251 GGGGCGCTTTATTACTTAAAAGGT 59.600 41.667 7.64 0.00 34.07 3.50
105 106 4.643334 AGGGGCGCTTTATTACTTAAAAGG 59.357 41.667 7.64 0.00 34.07 3.11
106 107 5.830000 AGGGGCGCTTTATTACTTAAAAG 57.170 39.130 7.64 0.00 36.09 2.27
107 108 6.593268 AAAGGGGCGCTTTATTACTTAAAA 57.407 33.333 25.79 0.00 29.52 1.52
108 109 6.208994 TGAAAAGGGGCGCTTTATTACTTAAA 59.791 34.615 26.94 3.17 0.00 1.52
109 110 5.711036 TGAAAAGGGGCGCTTTATTACTTAA 59.289 36.000 26.94 3.78 0.00 1.85
110 111 5.254901 TGAAAAGGGGCGCTTTATTACTTA 58.745 37.500 26.94 7.83 0.00 2.24
111 112 4.083565 TGAAAAGGGGCGCTTTATTACTT 58.916 39.130 26.94 12.46 0.00 2.24
112 113 3.692690 TGAAAAGGGGCGCTTTATTACT 58.307 40.909 26.94 13.15 0.00 2.24
113 114 4.649088 ATGAAAAGGGGCGCTTTATTAC 57.351 40.909 26.94 18.47 0.00 1.89
114 115 6.777213 TTTATGAAAAGGGGCGCTTTATTA 57.223 33.333 26.94 17.10 0.00 0.98
115 116 5.669164 TTTATGAAAAGGGGCGCTTTATT 57.331 34.783 26.94 14.56 0.00 1.40
116 117 5.669164 TTTTATGAAAAGGGGCGCTTTAT 57.331 34.783 26.94 20.00 0.00 1.40
117 118 5.470047 TTTTTATGAAAAGGGGCGCTTTA 57.530 34.783 26.94 14.83 31.41 1.85
118 119 4.344359 TTTTTATGAAAAGGGGCGCTTT 57.656 36.364 22.23 22.23 31.41 3.51
119 120 4.551702 ATTTTTATGAAAAGGGGCGCTT 57.448 36.364 11.46 11.46 38.09 4.68
120 121 4.551702 AATTTTTATGAAAAGGGGCGCT 57.448 36.364 7.64 0.00 38.09 5.92
121 122 6.729391 TTTAATTTTTATGAAAAGGGGCGC 57.271 33.333 0.00 0.00 38.09 6.53
152 153 9.455847 CGAGGGTAAATACTACAAATACTGTAC 57.544 37.037 0.00 0.00 39.64 2.90
153 154 9.407380 TCGAGGGTAAATACTACAAATACTGTA 57.593 33.333 0.00 0.00 39.64 2.74
154 155 8.297470 TCGAGGGTAAATACTACAAATACTGT 57.703 34.615 0.00 0.00 42.47 3.55
155 156 9.590451 TTTCGAGGGTAAATACTACAAATACTG 57.410 33.333 0.00 0.00 0.00 2.74
170 171 9.287373 ACAAACAATTTACTATTTCGAGGGTAA 57.713 29.630 0.00 0.00 0.00 2.85
171 172 8.851541 ACAAACAATTTACTATTTCGAGGGTA 57.148 30.769 0.00 0.00 0.00 3.69
172 173 7.754851 ACAAACAATTTACTATTTCGAGGGT 57.245 32.000 0.00 0.00 0.00 4.34
173 174 8.943002 ACTACAAACAATTTACTATTTCGAGGG 58.057 33.333 0.00 0.00 0.00 4.30
183 184 9.908152 GCAAGGAAATACTACAAACAATTTACT 57.092 29.630 0.00 0.00 34.65 2.24
184 185 9.135843 GGCAAGGAAATACTACAAACAATTTAC 57.864 33.333 0.00 0.00 0.00 2.01
185 186 9.084533 AGGCAAGGAAATACTACAAACAATTTA 57.915 29.630 0.00 0.00 0.00 1.40
186 187 7.962441 AGGCAAGGAAATACTACAAACAATTT 58.038 30.769 0.00 0.00 0.00 1.82
187 188 7.451566 AGAGGCAAGGAAATACTACAAACAATT 59.548 33.333 0.00 0.00 0.00 2.32
188 189 6.948309 AGAGGCAAGGAAATACTACAAACAAT 59.052 34.615 0.00 0.00 0.00 2.71
189 190 6.303839 AGAGGCAAGGAAATACTACAAACAA 58.696 36.000 0.00 0.00 0.00 2.83
190 191 5.876357 AGAGGCAAGGAAATACTACAAACA 58.124 37.500 0.00 0.00 0.00 2.83
191 192 5.938125 TGAGAGGCAAGGAAATACTACAAAC 59.062 40.000 0.00 0.00 0.00 2.93
192 193 5.938125 GTGAGAGGCAAGGAAATACTACAAA 59.062 40.000 0.00 0.00 0.00 2.83
193 194 5.488341 GTGAGAGGCAAGGAAATACTACAA 58.512 41.667 0.00 0.00 0.00 2.41
194 195 4.381612 CGTGAGAGGCAAGGAAATACTACA 60.382 45.833 0.00 0.00 0.00 2.74
195 196 4.113354 CGTGAGAGGCAAGGAAATACTAC 58.887 47.826 0.00 0.00 0.00 2.73
196 197 3.430374 GCGTGAGAGGCAAGGAAATACTA 60.430 47.826 0.00 0.00 0.00 1.82
197 198 2.678190 GCGTGAGAGGCAAGGAAATACT 60.678 50.000 0.00 0.00 0.00 2.12
198 199 1.666189 GCGTGAGAGGCAAGGAAATAC 59.334 52.381 0.00 0.00 0.00 1.89
199 200 1.406887 GGCGTGAGAGGCAAGGAAATA 60.407 52.381 0.00 0.00 36.61 1.40
200 201 0.678048 GGCGTGAGAGGCAAGGAAAT 60.678 55.000 0.00 0.00 36.61 2.17
201 202 1.302511 GGCGTGAGAGGCAAGGAAA 60.303 57.895 0.00 0.00 36.61 3.13
202 203 2.347490 GGCGTGAGAGGCAAGGAA 59.653 61.111 0.00 0.00 36.61 3.36
203 204 3.706373 GGGCGTGAGAGGCAAGGA 61.706 66.667 0.00 0.00 38.57 3.36
221 222 4.210304 GGACATTCGCGAGCGTGC 62.210 66.667 16.07 14.95 40.74 5.34
222 223 1.695893 AATGGACATTCGCGAGCGTG 61.696 55.000 16.07 15.04 40.74 5.34
223 224 1.447838 AATGGACATTCGCGAGCGT 60.448 52.632 17.24 10.85 40.74 5.07
224 225 1.011904 CAATGGACATTCGCGAGCG 60.012 57.895 9.59 11.64 41.35 5.03
225 226 0.447801 AACAATGGACATTCGCGAGC 59.552 50.000 9.59 0.00 0.00 5.03
226 227 2.476185 GGAAACAATGGACATTCGCGAG 60.476 50.000 9.59 0.27 0.00 5.03
227 228 1.466950 GGAAACAATGGACATTCGCGA 59.533 47.619 3.71 3.71 0.00 5.87
228 229 1.467374 GGGAAACAATGGACATTCGCG 60.467 52.381 0.00 0.00 0.00 5.87
229 230 1.135112 GGGGAAACAATGGACATTCGC 60.135 52.381 0.00 0.00 34.93 4.70
230 231 1.132262 CGGGGAAACAATGGACATTCG 59.868 52.381 0.00 0.00 0.00 3.34
231 232 1.135112 GCGGGGAAACAATGGACATTC 60.135 52.381 0.00 0.00 0.00 2.67
232 233 0.894835 GCGGGGAAACAATGGACATT 59.105 50.000 0.00 0.00 0.00 2.71
233 234 1.312371 CGCGGGGAAACAATGGACAT 61.312 55.000 0.00 0.00 0.00 3.06
234 235 1.969064 CGCGGGGAAACAATGGACA 60.969 57.895 0.00 0.00 0.00 4.02
283 284 5.803461 GGGTTTAAATTACCATTTGCGTCTC 59.197 40.000 0.00 0.00 37.40 3.36
284 285 5.336929 GGGGTTTAAATTACCATTTGCGTCT 60.337 40.000 8.28 0.00 37.40 4.18
299 300 4.363540 CCGGGCCGGGGGTTTAAA 62.364 66.667 37.27 0.00 44.15 1.52
366 367 0.179048 GGTGGATCGCATCACATGGA 60.179 55.000 0.00 0.00 35.74 3.41
443 446 0.831307 ATCAGCTTAACCCGTCTCCC 59.169 55.000 0.00 0.00 0.00 4.30
463 466 1.870055 GACCGCGTCCCTTGTGTCTA 61.870 60.000 4.92 0.00 0.00 2.59
606 630 0.827507 GCACTTTGCAGGAAAGGGGA 60.828 55.000 17.61 0.00 44.30 4.81
629 653 1.740025 GTGTGGAATGGAAGCTAGTGC 59.260 52.381 0.00 0.00 40.05 4.40
631 655 3.370953 GGATGTGTGGAATGGAAGCTAGT 60.371 47.826 0.00 0.00 0.00 2.57
655 679 4.564372 CGTGTCTTGGTGAGAGTTATGATG 59.436 45.833 0.00 0.00 34.31 3.07
659 683 3.056749 GTCCGTGTCTTGGTGAGAGTTAT 60.057 47.826 0.00 0.00 34.31 1.89
660 684 2.295349 GTCCGTGTCTTGGTGAGAGTTA 59.705 50.000 0.00 0.00 34.31 2.24
661 685 1.068741 GTCCGTGTCTTGGTGAGAGTT 59.931 52.381 0.00 0.00 34.31 3.01
693 720 2.618709 GGGAGCCATGGAATAGTTTTCG 59.381 50.000 18.40 0.00 0.00 3.46
694 721 2.618709 CGGGAGCCATGGAATAGTTTTC 59.381 50.000 18.40 0.00 0.00 2.29
695 722 2.654863 CGGGAGCCATGGAATAGTTTT 58.345 47.619 18.40 0.00 0.00 2.43
696 723 1.133792 CCGGGAGCCATGGAATAGTTT 60.134 52.381 18.40 0.00 0.00 2.66
697 724 0.474184 CCGGGAGCCATGGAATAGTT 59.526 55.000 18.40 0.00 0.00 2.24
698 725 0.694444 ACCGGGAGCCATGGAATAGT 60.694 55.000 18.40 0.96 0.00 2.12
699 726 0.035458 GACCGGGAGCCATGGAATAG 59.965 60.000 18.40 1.58 0.00 1.73
700 727 1.754380 CGACCGGGAGCCATGGAATA 61.754 60.000 18.40 0.00 0.00 1.75
701 728 2.919043 GACCGGGAGCCATGGAAT 59.081 61.111 18.40 1.89 0.00 3.01
702 729 3.781307 CGACCGGGAGCCATGGAA 61.781 66.667 18.40 0.00 0.00 3.53
703 730 4.770362 TCGACCGGGAGCCATGGA 62.770 66.667 18.40 0.00 0.00 3.41
704 731 3.550431 ATCGACCGGGAGCCATGG 61.550 66.667 7.63 7.63 0.00 3.66
705 732 2.280389 CATCGACCGGGAGCCATG 60.280 66.667 6.32 0.00 0.00 3.66
706 733 2.764128 ACATCGACCGGGAGCCAT 60.764 61.111 6.32 0.00 0.00 4.40
707 734 3.770040 CACATCGACCGGGAGCCA 61.770 66.667 6.32 0.00 0.00 4.75
737 764 2.537560 CGCCAAGATGGTCGATGCC 61.538 63.158 7.21 0.00 40.46 4.40
740 767 2.011741 TACGCGCCAAGATGGTCGAT 62.012 55.000 5.73 7.48 40.46 3.59
741 768 2.607668 CTACGCGCCAAGATGGTCGA 62.608 60.000 5.73 0.00 40.46 4.20
743 770 0.249489 ATCTACGCGCCAAGATGGTC 60.249 55.000 16.10 0.00 40.46 4.02
744 771 0.178068 AATCTACGCGCCAAGATGGT 59.822 50.000 17.21 3.75 40.46 3.55
746 773 0.583438 CCAATCTACGCGCCAAGATG 59.417 55.000 17.21 11.99 32.79 2.90
747 774 0.178068 ACCAATCTACGCGCCAAGAT 59.822 50.000 5.73 9.84 33.87 2.40
748 775 0.036765 AACCAATCTACGCGCCAAGA 60.037 50.000 5.73 7.54 0.00 3.02
749 776 0.802494 AAACCAATCTACGCGCCAAG 59.198 50.000 5.73 0.82 0.00 3.61
763 790 9.998106 GCTATATTATAGGAAGAAGTCAAACCA 57.002 33.333 11.72 0.00 0.00 3.67
799 826 1.689233 TGCTAGCCCTCGGTGGAAT 60.689 57.895 13.29 0.00 38.35 3.01
847 880 3.698539 ACTCCTTACTTAAGTACTCGGCC 59.301 47.826 14.96 0.00 0.00 6.13
850 883 6.654793 ACGTACTCCTTACTTAAGTACTCG 57.345 41.667 14.96 12.86 41.96 4.18
861 894 2.033662 CGCCTACGTACGTACTCCTTAC 60.034 54.545 23.60 7.54 33.53 2.34
974 1020 4.760840 GACGAGAGCTGACGCGCA 62.761 66.667 5.73 4.25 42.32 6.09
1191 1242 3.716006 CCGGTGCTGTTGTCGCAG 61.716 66.667 0.00 0.00 38.19 5.18
1652 1703 1.003718 GCTGTCCCACTAAAGGCGT 60.004 57.895 0.00 0.00 0.00 5.68
1731 1782 0.396139 GAGGAGGCAATGGCAATGGA 60.396 55.000 10.05 0.00 43.71 3.41
1871 1922 1.897398 ATTTGTCTTGCGACGACGGC 61.897 55.000 9.67 0.00 43.21 5.68
2262 2313 0.450583 TGCTGTAGAAGTACGAGCGG 59.549 55.000 0.00 0.00 36.69 5.52
2268 2319 4.017808 TCTCCTCCTTGCTGTAGAAGTAC 58.982 47.826 0.00 0.00 0.00 2.73
2871 2922 2.194212 GTCCTCTATCCTCGCGGCA 61.194 63.158 6.13 0.00 0.00 5.69
2903 2954 3.282745 GAGTCCGTCTTCCGCTGCA 62.283 63.158 0.00 0.00 34.38 4.41
2955 3006 4.281947 GGAGGCTACGGCTACGCC 62.282 72.222 0.00 0.00 46.75 5.68
3004 3055 0.383949 TGCAGCGGGAAACTGAAAAC 59.616 50.000 0.00 0.00 39.98 2.43
3042 3097 2.874014 TGAACATGTTGAGGAATGCCA 58.126 42.857 17.58 0.97 36.29 4.92
3179 3241 0.758685 TGGGTGCTTGGGGAAACTTG 60.759 55.000 0.00 0.00 0.00 3.16
3221 3285 1.985159 ACAGTCTCCATTTGGCACCTA 59.015 47.619 0.00 0.00 34.44 3.08
3248 3312 0.461339 GCTTCAATCCGGGCGACTTA 60.461 55.000 0.00 0.00 0.00 2.24
3249 3313 1.745489 GCTTCAATCCGGGCGACTT 60.745 57.895 0.00 0.00 0.00 3.01
3430 3494 1.435105 CCTCTCATCGCTTGCGAGA 59.565 57.895 21.85 16.90 39.13 4.04
3539 3604 2.100584 ACAGCATCGGTCAGAGAGAATC 59.899 50.000 0.00 0.00 0.00 2.52
3569 3634 4.595198 CATATATGCATCGAAGCCACAG 57.405 45.455 10.54 0.00 0.00 3.66
3695 3761 2.094390 GGTAGCAGTGACGTAATGGTCA 60.094 50.000 0.00 0.00 44.25 4.02
3750 3823 3.438360 GAGCCTCAAAATTTGTATGCCG 58.562 45.455 5.56 0.00 0.00 5.69
3756 3829 4.162131 AGTTTGTGGAGCCTCAAAATTTGT 59.838 37.500 15.81 0.51 39.86 2.83
3767 3840 1.168714 GACATGGAGTTTGTGGAGCC 58.831 55.000 0.00 0.00 0.00 4.70
3768 3841 1.168714 GGACATGGAGTTTGTGGAGC 58.831 55.000 0.00 0.00 0.00 4.70
3769 3842 2.566833 TGGACATGGAGTTTGTGGAG 57.433 50.000 0.00 0.00 0.00 3.86
3770 3843 2.374839 TCATGGACATGGAGTTTGTGGA 59.625 45.455 11.98 0.00 39.24 4.02
3771 3844 2.489329 GTCATGGACATGGAGTTTGTGG 59.511 50.000 11.98 0.00 39.24 4.17
3772 3845 3.058016 GTGTCATGGACATGGAGTTTGTG 60.058 47.826 11.98 0.00 44.63 3.33
3773 3846 3.149196 GTGTCATGGACATGGAGTTTGT 58.851 45.455 11.98 0.00 44.63 2.83
3774 3847 2.489329 GGTGTCATGGACATGGAGTTTG 59.511 50.000 11.98 0.00 44.63 2.93
3775 3848 2.108075 TGGTGTCATGGACATGGAGTTT 59.892 45.455 11.98 0.00 44.63 2.66
3776 3849 1.704628 TGGTGTCATGGACATGGAGTT 59.295 47.619 11.98 0.00 44.63 3.01
3777 3850 1.361204 TGGTGTCATGGACATGGAGT 58.639 50.000 11.98 0.00 44.63 3.85
3778 3851 2.172082 AGATGGTGTCATGGACATGGAG 59.828 50.000 11.98 0.00 44.63 3.86
3779 3852 2.199208 AGATGGTGTCATGGACATGGA 58.801 47.619 11.98 0.00 44.63 3.41
3780 3853 2.723322 AGATGGTGTCATGGACATGG 57.277 50.000 11.98 0.00 44.63 3.66
3781 3854 4.095932 CAGAAAGATGGTGTCATGGACATG 59.904 45.833 5.95 5.95 44.63 3.21
3782 3855 4.019051 TCAGAAAGATGGTGTCATGGACAT 60.019 41.667 2.02 0.00 44.63 3.06
3783 3856 3.327464 TCAGAAAGATGGTGTCATGGACA 59.673 43.478 0.00 0.00 40.50 4.02
3784 3857 3.942829 TCAGAAAGATGGTGTCATGGAC 58.057 45.455 0.00 0.00 32.98 4.02
3785 3858 4.225717 TGATCAGAAAGATGGTGTCATGGA 59.774 41.667 0.00 0.00 37.00 3.41
3786 3859 4.520179 TGATCAGAAAGATGGTGTCATGG 58.480 43.478 0.00 0.00 37.00 3.66
3787 3860 6.373495 TCTTTGATCAGAAAGATGGTGTCATG 59.627 38.462 5.85 0.00 37.10 3.07
3788 3861 6.479006 TCTTTGATCAGAAAGATGGTGTCAT 58.521 36.000 5.85 0.00 37.10 3.06
3789 3862 5.868454 TCTTTGATCAGAAAGATGGTGTCA 58.132 37.500 5.85 0.00 37.10 3.58
3790 3863 6.998968 ATCTTTGATCAGAAAGATGGTGTC 57.001 37.500 17.91 0.00 46.38 3.67
3797 3870 7.250032 TCTTCCTCATCTTTGATCAGAAAGA 57.750 36.000 11.34 11.34 44.17 2.52
3798 3871 7.918536 TTCTTCCTCATCTTTGATCAGAAAG 57.081 36.000 0.00 0.00 34.72 2.62
3799 3872 7.941238 ACTTTCTTCCTCATCTTTGATCAGAAA 59.059 33.333 0.00 0.00 33.90 2.52
3800 3873 7.389884 CACTTTCTTCCTCATCTTTGATCAGAA 59.610 37.037 0.00 0.00 0.00 3.02
3801 3874 6.877855 CACTTTCTTCCTCATCTTTGATCAGA 59.122 38.462 0.00 0.00 0.00 3.27
3802 3875 6.654161 ACACTTTCTTCCTCATCTTTGATCAG 59.346 38.462 0.00 0.00 0.00 2.90
3803 3876 6.429078 CACACTTTCTTCCTCATCTTTGATCA 59.571 38.462 0.00 0.00 0.00 2.92
3804 3877 6.652481 TCACACTTTCTTCCTCATCTTTGATC 59.348 38.462 0.00 0.00 0.00 2.92
3805 3878 6.537355 TCACACTTTCTTCCTCATCTTTGAT 58.463 36.000 0.00 0.00 0.00 2.57
3806 3879 5.928976 TCACACTTTCTTCCTCATCTTTGA 58.071 37.500 0.00 0.00 0.00 2.69
3807 3880 6.624352 TTCACACTTTCTTCCTCATCTTTG 57.376 37.500 0.00 0.00 0.00 2.77
3808 3881 7.645058 TTTTCACACTTTCTTCCTCATCTTT 57.355 32.000 0.00 0.00 0.00 2.52
3809 3882 7.416777 GGTTTTTCACACTTTCTTCCTCATCTT 60.417 37.037 0.00 0.00 0.00 2.40
3810 3883 6.039829 GGTTTTTCACACTTTCTTCCTCATCT 59.960 38.462 0.00 0.00 0.00 2.90
3811 3884 6.039829 AGGTTTTTCACACTTTCTTCCTCATC 59.960 38.462 0.00 0.00 0.00 2.92
3812 3885 5.893824 AGGTTTTTCACACTTTCTTCCTCAT 59.106 36.000 0.00 0.00 0.00 2.90
3813 3886 5.261216 AGGTTTTTCACACTTTCTTCCTCA 58.739 37.500 0.00 0.00 0.00 3.86
3814 3887 5.357032 TGAGGTTTTTCACACTTTCTTCCTC 59.643 40.000 0.00 0.00 38.41 3.71
3815 3888 5.261216 TGAGGTTTTTCACACTTTCTTCCT 58.739 37.500 0.00 0.00 0.00 3.36
3816 3889 5.576447 TGAGGTTTTTCACACTTTCTTCC 57.424 39.130 0.00 0.00 0.00 3.46
3817 3890 8.479313 AATTTGAGGTTTTTCACACTTTCTTC 57.521 30.769 0.00 0.00 0.00 2.87
3818 3891 8.846943 AAATTTGAGGTTTTTCACACTTTCTT 57.153 26.923 0.00 0.00 0.00 2.52
3827 3900 9.250246 CCCCTAGTATAAATTTGAGGTTTTTCA 57.750 33.333 0.00 0.00 0.00 2.69
3828 3901 8.195436 GCCCCTAGTATAAATTTGAGGTTTTTC 58.805 37.037 0.00 0.00 0.00 2.29
3829 3902 7.899172 AGCCCCTAGTATAAATTTGAGGTTTTT 59.101 33.333 0.00 0.00 0.00 1.94
3830 3903 7.419203 AGCCCCTAGTATAAATTTGAGGTTTT 58.581 34.615 0.00 0.00 0.00 2.43
3831 3904 6.981737 AGCCCCTAGTATAAATTTGAGGTTT 58.018 36.000 0.00 0.00 0.00 3.27
3832 3905 6.592207 AGCCCCTAGTATAAATTTGAGGTT 57.408 37.500 0.00 0.00 0.00 3.50
3833 3906 6.592207 AAGCCCCTAGTATAAATTTGAGGT 57.408 37.500 0.00 0.00 0.00 3.85
3834 3907 7.559897 TCAAAAGCCCCTAGTATAAATTTGAGG 59.440 37.037 0.00 0.10 32.39 3.86
3835 3908 8.519799 TCAAAAGCCCCTAGTATAAATTTGAG 57.480 34.615 0.00 0.00 32.39 3.02
3836 3909 8.745590 GTTCAAAAGCCCCTAGTATAAATTTGA 58.254 33.333 0.00 0.00 33.79 2.69
3837 3910 8.527810 TGTTCAAAAGCCCCTAGTATAAATTTG 58.472 33.333 0.00 0.00 0.00 2.32
3838 3911 8.658840 TGTTCAAAAGCCCCTAGTATAAATTT 57.341 30.769 0.00 0.00 0.00 1.82
3839 3912 8.113462 TCTGTTCAAAAGCCCCTAGTATAAATT 58.887 33.333 0.00 0.00 0.00 1.82
3840 3913 7.639378 TCTGTTCAAAAGCCCCTAGTATAAAT 58.361 34.615 0.00 0.00 0.00 1.40
3841 3914 7.023171 TCTGTTCAAAAGCCCCTAGTATAAA 57.977 36.000 0.00 0.00 0.00 1.40
3842 3915 6.630203 TCTGTTCAAAAGCCCCTAGTATAA 57.370 37.500 0.00 0.00 0.00 0.98
3843 3916 6.157994 ACATCTGTTCAAAAGCCCCTAGTATA 59.842 38.462 0.00 0.00 0.00 1.47
3844 3917 5.044846 ACATCTGTTCAAAAGCCCCTAGTAT 60.045 40.000 0.00 0.00 0.00 2.12
3845 3918 4.288626 ACATCTGTTCAAAAGCCCCTAGTA 59.711 41.667 0.00 0.00 0.00 1.82
3846 3919 3.074538 ACATCTGTTCAAAAGCCCCTAGT 59.925 43.478 0.00 0.00 0.00 2.57
3847 3920 3.690460 ACATCTGTTCAAAAGCCCCTAG 58.310 45.455 0.00 0.00 0.00 3.02
3848 3921 3.330701 AGACATCTGTTCAAAAGCCCCTA 59.669 43.478 0.00 0.00 0.00 3.53
3849 3922 2.108952 AGACATCTGTTCAAAAGCCCCT 59.891 45.455 0.00 0.00 0.00 4.79
3850 3923 2.229784 CAGACATCTGTTCAAAAGCCCC 59.770 50.000 0.40 0.00 39.09 5.80
3851 3924 3.149196 TCAGACATCTGTTCAAAAGCCC 58.851 45.455 8.70 0.00 44.12 5.19
3852 3925 5.382618 AATCAGACATCTGTTCAAAAGCC 57.617 39.130 8.70 0.00 44.12 4.35
3853 3926 6.441274 TCAAATCAGACATCTGTTCAAAAGC 58.559 36.000 8.70 0.00 44.12 3.51
3854 3927 8.861033 TTTCAAATCAGACATCTGTTCAAAAG 57.139 30.769 8.70 0.00 44.12 2.27
3855 3928 9.820725 ATTTTCAAATCAGACATCTGTTCAAAA 57.179 25.926 8.70 3.31 44.12 2.44
3881 3954 9.944376 ACATTAGCTCACTCTTATGAAAGTTTA 57.056 29.630 0.00 0.00 34.13 2.01
3882 3955 8.854614 ACATTAGCTCACTCTTATGAAAGTTT 57.145 30.769 0.00 0.00 34.13 2.66
3883 3956 8.725148 CAACATTAGCTCACTCTTATGAAAGTT 58.275 33.333 0.00 0.00 34.13 2.66
3884 3957 7.880195 ACAACATTAGCTCACTCTTATGAAAGT 59.120 33.333 0.00 0.00 34.13 2.66
3885 3958 8.261492 ACAACATTAGCTCACTCTTATGAAAG 57.739 34.615 0.00 0.00 0.00 2.62
3886 3959 8.621532 AACAACATTAGCTCACTCTTATGAAA 57.378 30.769 0.00 0.00 0.00 2.69
3887 3960 8.506437 CAAACAACATTAGCTCACTCTTATGAA 58.494 33.333 0.00 0.00 0.00 2.57
3888 3961 7.119699 CCAAACAACATTAGCTCACTCTTATGA 59.880 37.037 0.00 0.00 0.00 2.15
3889 3962 7.119699 TCCAAACAACATTAGCTCACTCTTATG 59.880 37.037 0.00 0.00 0.00 1.90
3890 3963 7.168219 TCCAAACAACATTAGCTCACTCTTAT 58.832 34.615 0.00 0.00 0.00 1.73
3891 3964 6.530120 TCCAAACAACATTAGCTCACTCTTA 58.470 36.000 0.00 0.00 0.00 2.10
3892 3965 5.376625 TCCAAACAACATTAGCTCACTCTT 58.623 37.500 0.00 0.00 0.00 2.85
3893 3966 4.973168 TCCAAACAACATTAGCTCACTCT 58.027 39.130 0.00 0.00 0.00 3.24
3894 3967 5.689383 TTCCAAACAACATTAGCTCACTC 57.311 39.130 0.00 0.00 0.00 3.51
3895 3968 5.010012 CCTTTCCAAACAACATTAGCTCACT 59.990 40.000 0.00 0.00 0.00 3.41
3896 3969 5.222631 CCTTTCCAAACAACATTAGCTCAC 58.777 41.667 0.00 0.00 0.00 3.51
3897 3970 4.261994 GCCTTTCCAAACAACATTAGCTCA 60.262 41.667 0.00 0.00 0.00 4.26
3898 3971 4.021981 AGCCTTTCCAAACAACATTAGCTC 60.022 41.667 0.00 0.00 0.00 4.09
3899 3972 3.897505 AGCCTTTCCAAACAACATTAGCT 59.102 39.130 0.00 0.00 0.00 3.32
3900 3973 4.257267 AGCCTTTCCAAACAACATTAGC 57.743 40.909 0.00 0.00 0.00 3.09
3901 3974 7.657336 TCTTTAGCCTTTCCAAACAACATTAG 58.343 34.615 0.00 0.00 0.00 1.73
3902 3975 7.589958 TCTTTAGCCTTTCCAAACAACATTA 57.410 32.000 0.00 0.00 0.00 1.90
3903 3976 6.478512 TCTTTAGCCTTTCCAAACAACATT 57.521 33.333 0.00 0.00 0.00 2.71
3904 3977 6.478512 TTCTTTAGCCTTTCCAAACAACAT 57.521 33.333 0.00 0.00 0.00 2.71
3905 3978 5.923733 TTCTTTAGCCTTTCCAAACAACA 57.076 34.783 0.00 0.00 0.00 3.33
3906 3979 7.118535 TGTTTTTCTTTAGCCTTTCCAAACAAC 59.881 33.333 0.00 0.00 30.69 3.32
3907 3980 7.162082 TGTTTTTCTTTAGCCTTTCCAAACAA 58.838 30.769 0.00 0.00 30.69 2.83
3908 3981 6.702329 TGTTTTTCTTTAGCCTTTCCAAACA 58.298 32.000 0.00 0.00 31.04 2.83
3909 3982 7.603963 TTGTTTTTCTTTAGCCTTTCCAAAC 57.396 32.000 0.00 0.00 0.00 2.93
3910 3983 8.672815 CAATTGTTTTTCTTTAGCCTTTCCAAA 58.327 29.630 0.00 0.00 0.00 3.28
3911 3984 7.201688 GCAATTGTTTTTCTTTAGCCTTTCCAA 60.202 33.333 7.40 0.00 0.00 3.53
3912 3985 6.259829 GCAATTGTTTTTCTTTAGCCTTTCCA 59.740 34.615 7.40 0.00 0.00 3.53
3913 3986 6.483307 AGCAATTGTTTTTCTTTAGCCTTTCC 59.517 34.615 7.40 0.00 0.00 3.13
3914 3987 7.482654 AGCAATTGTTTTTCTTTAGCCTTTC 57.517 32.000 7.40 0.00 0.00 2.62
3915 3988 7.864108 AAGCAATTGTTTTTCTTTAGCCTTT 57.136 28.000 7.40 0.00 0.00 3.11
3916 3989 7.864108 AAAGCAATTGTTTTTCTTTAGCCTT 57.136 28.000 13.80 0.00 0.00 4.35
3917 3990 7.441157 GGTAAAGCAATTGTTTTTCTTTAGCCT 59.559 33.333 22.81 0.42 39.68 4.58
3918 3991 7.225734 TGGTAAAGCAATTGTTTTTCTTTAGCC 59.774 33.333 22.81 18.67 42.39 3.93
3919 3992 8.137210 TGGTAAAGCAATTGTTTTTCTTTAGC 57.863 30.769 22.81 23.21 42.90 3.09
3920 3993 8.764287 CCTGGTAAAGCAATTGTTTTTCTTTAG 58.236 33.333 22.81 16.14 32.09 1.85
3921 3994 8.478877 TCCTGGTAAAGCAATTGTTTTTCTTTA 58.521 29.630 22.81 15.56 31.09 1.85
3922 3995 7.334858 TCCTGGTAAAGCAATTGTTTTTCTTT 58.665 30.769 22.81 16.43 31.09 2.52
3923 3996 6.883744 TCCTGGTAAAGCAATTGTTTTTCTT 58.116 32.000 22.81 7.41 31.09 2.52
3924 3997 6.478512 TCCTGGTAAAGCAATTGTTTTTCT 57.521 33.333 22.81 4.48 31.09 2.52
3925 3998 7.546778 TTTCCTGGTAAAGCAATTGTTTTTC 57.453 32.000 22.81 17.89 31.09 2.29
3926 3999 9.051679 GTATTTCCTGGTAAAGCAATTGTTTTT 57.948 29.630 22.81 17.09 31.09 1.94
3927 4000 8.428852 AGTATTTCCTGGTAAAGCAATTGTTTT 58.571 29.630 21.62 21.62 33.17 2.43
3928 4001 7.872483 CAGTATTTCCTGGTAAAGCAATTGTTT 59.128 33.333 7.40 4.26 0.00 2.83
3929 4002 7.232534 TCAGTATTTCCTGGTAAAGCAATTGTT 59.767 33.333 7.40 0.00 33.14 2.83
3930 4003 6.719370 TCAGTATTTCCTGGTAAAGCAATTGT 59.281 34.615 7.40 0.00 33.14 2.71
3931 4004 7.029563 GTCAGTATTTCCTGGTAAAGCAATTG 58.970 38.462 0.00 0.00 33.14 2.32
3932 4005 6.948309 AGTCAGTATTTCCTGGTAAAGCAATT 59.052 34.615 0.00 0.00 33.14 2.32
3933 4006 6.485171 AGTCAGTATTTCCTGGTAAAGCAAT 58.515 36.000 0.00 0.00 33.14 3.56
3934 4007 5.876357 AGTCAGTATTTCCTGGTAAAGCAA 58.124 37.500 0.00 0.00 33.14 3.91
3935 4008 5.499004 AGTCAGTATTTCCTGGTAAAGCA 57.501 39.130 0.00 0.00 33.14 3.91
3936 4009 5.392057 GCAAGTCAGTATTTCCTGGTAAAGC 60.392 44.000 0.00 0.00 33.14 3.51
3937 4010 5.705441 TGCAAGTCAGTATTTCCTGGTAAAG 59.295 40.000 0.00 0.00 33.14 1.85
3938 4011 5.626142 TGCAAGTCAGTATTTCCTGGTAAA 58.374 37.500 0.00 0.00 33.14 2.01
3939 4012 5.235850 TGCAAGTCAGTATTTCCTGGTAA 57.764 39.130 0.00 0.00 33.14 2.85
3940 4013 4.901197 TGCAAGTCAGTATTTCCTGGTA 57.099 40.909 0.00 0.00 33.14 3.25
3941 4014 3.788227 TGCAAGTCAGTATTTCCTGGT 57.212 42.857 0.00 0.00 33.14 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.