Multiple sequence alignment - TraesCS5B01G202300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G202300 chr5B 100.000 3669 0 0 1 3669 368506636 368502968 0.000000e+00 6776.0
1 TraesCS5B01G202300 chr5D 93.787 2189 97 21 1263 3435 318462398 318460233 0.000000e+00 3253.0
2 TraesCS5B01G202300 chr5D 92.717 865 46 11 291 1150 318463251 318462399 0.000000e+00 1232.0
3 TraesCS5B01G202300 chr5D 93.966 116 7 0 1149 1264 27461855 27461740 3.770000e-40 176.0
4 TraesCS5B01G202300 chr5A 93.110 2206 99 21 1261 3435 413051860 413049677 0.000000e+00 3182.0
5 TraesCS5B01G202300 chr5A 91.065 873 56 8 291 1151 413052723 413051861 0.000000e+00 1160.0
6 TraesCS5B01G202300 chr5A 90.762 617 48 6 537 1151 413063735 413063126 0.000000e+00 815.0
7 TraesCS5B01G202300 chr5A 93.842 341 20 1 1261 1600 413063125 413062785 2.530000e-141 512.0
8 TraesCS5B01G202300 chr7A 87.432 183 19 1 47 225 3905427 3905609 1.340000e-49 207.0
9 TraesCS5B01G202300 chr3B 85.000 180 25 2 47 225 108369225 108369047 8.090000e-42 182.0
10 TraesCS5B01G202300 chr3B 93.966 116 7 0 1149 1264 712657578 712657693 3.770000e-40 176.0
11 TraesCS5B01G202300 chr1D 92.742 124 7 2 1149 1271 136673597 136673475 1.050000e-40 178.0
12 TraesCS5B01G202300 chr1D 92.500 120 9 0 1149 1268 305479194 305479313 4.870000e-39 172.0
13 TraesCS5B01G202300 chr3D 93.966 116 7 0 1149 1264 279902210 279902325 3.770000e-40 176.0
14 TraesCS5B01G202300 chr3D 92.500 120 9 0 1149 1268 397345761 397345880 4.870000e-39 172.0
15 TraesCS5B01G202300 chr2D 93.966 116 7 0 1149 1264 451299413 451299528 3.770000e-40 176.0
16 TraesCS5B01G202300 chr2D 96.774 31 1 0 3639 3669 114546987 114546957 7.000000e-03 52.8
17 TraesCS5B01G202300 chr2A 93.966 116 7 0 1149 1264 757643585 757643700 3.770000e-40 176.0
18 TraesCS5B01G202300 chr1A 93.277 119 8 0 1148 1266 385891910 385891792 3.770000e-40 176.0
19 TraesCS5B01G202300 chr6B 83.333 108 12 5 126 227 578678757 578678864 1.080000e-15 95.3
20 TraesCS5B01G202300 chr2B 100.000 33 0 0 3637 3669 577427767 577427799 1.100000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G202300 chr5B 368502968 368506636 3668 True 6776.0 6776 100.0000 1 3669 1 chr5B.!!$R1 3668
1 TraesCS5B01G202300 chr5D 318460233 318463251 3018 True 2242.5 3253 93.2520 291 3435 2 chr5D.!!$R2 3144
2 TraesCS5B01G202300 chr5A 413049677 413052723 3046 True 2171.0 3182 92.0875 291 3435 2 chr5A.!!$R1 3144
3 TraesCS5B01G202300 chr5A 413062785 413063735 950 True 663.5 815 92.3020 537 1600 2 chr5A.!!$R2 1063

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
132 133 0.103755 TTGCTGCTCGGCTAGATCAG 59.896 55.0 0.00 8.5 43.84 2.90 F
1171 1191 0.035056 CCCTCAGTCCGGAAATGCTT 60.035 55.0 5.23 0.0 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1241 1261 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.00 44.66 2.12 R
2735 2757 0.179100 CCCTGTACAGATCACCAGCG 60.179 60.0 24.68 3.81 0.00 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.951229 AACCACCTCCAACGAGAATT 57.049 45.000 0.00 0.00 38.52 2.17
20 21 2.951229 ACCACCTCCAACGAGAATTT 57.049 45.000 0.00 0.00 38.52 1.82
21 22 3.223674 ACCACCTCCAACGAGAATTTT 57.776 42.857 0.00 0.00 38.52 1.82
22 23 2.884639 ACCACCTCCAACGAGAATTTTG 59.115 45.455 0.00 0.00 38.52 2.44
23 24 2.351738 CCACCTCCAACGAGAATTTTGC 60.352 50.000 0.00 0.00 38.52 3.68
24 25 2.293122 CACCTCCAACGAGAATTTTGCA 59.707 45.455 0.00 0.00 38.52 4.08
25 26 2.554032 ACCTCCAACGAGAATTTTGCAG 59.446 45.455 0.00 0.00 38.52 4.41
26 27 2.813754 CCTCCAACGAGAATTTTGCAGA 59.186 45.455 0.00 0.00 38.52 4.26
27 28 3.253188 CCTCCAACGAGAATTTTGCAGAA 59.747 43.478 0.00 0.00 38.52 3.02
28 29 4.470462 CTCCAACGAGAATTTTGCAGAAG 58.530 43.478 0.00 0.00 38.52 2.85
29 30 2.982470 CCAACGAGAATTTTGCAGAAGC 59.018 45.455 0.00 0.00 42.57 3.86
30 31 3.304928 CCAACGAGAATTTTGCAGAAGCT 60.305 43.478 0.00 0.00 42.74 3.74
31 32 4.083324 CCAACGAGAATTTTGCAGAAGCTA 60.083 41.667 0.00 0.00 42.74 3.32
32 33 4.670227 ACGAGAATTTTGCAGAAGCTAC 57.330 40.909 0.00 0.00 42.74 3.58
33 34 3.437049 ACGAGAATTTTGCAGAAGCTACC 59.563 43.478 0.00 0.00 42.74 3.18
34 35 3.686726 CGAGAATTTTGCAGAAGCTACCT 59.313 43.478 0.00 0.00 42.74 3.08
35 36 4.201763 CGAGAATTTTGCAGAAGCTACCTC 60.202 45.833 0.00 0.00 42.74 3.85
36 37 4.655963 AGAATTTTGCAGAAGCTACCTCA 58.344 39.130 0.00 0.00 42.74 3.86
37 38 5.259632 AGAATTTTGCAGAAGCTACCTCAT 58.740 37.500 0.00 0.00 42.74 2.90
38 39 5.713861 AGAATTTTGCAGAAGCTACCTCATT 59.286 36.000 0.00 0.00 42.74 2.57
39 40 6.886459 AGAATTTTGCAGAAGCTACCTCATTA 59.114 34.615 0.00 0.00 42.74 1.90
40 41 7.394359 AGAATTTTGCAGAAGCTACCTCATTAA 59.606 33.333 0.00 0.00 42.74 1.40
41 42 6.500684 TTTTGCAGAAGCTACCTCATTAAG 57.499 37.500 0.00 0.00 42.74 1.85
42 43 4.826274 TGCAGAAGCTACCTCATTAAGT 57.174 40.909 0.00 0.00 42.74 2.24
43 44 4.759782 TGCAGAAGCTACCTCATTAAGTC 58.240 43.478 0.00 0.00 42.74 3.01
44 45 4.467795 TGCAGAAGCTACCTCATTAAGTCT 59.532 41.667 0.00 0.00 42.74 3.24
45 46 5.046304 TGCAGAAGCTACCTCATTAAGTCTT 60.046 40.000 0.00 0.00 42.74 3.01
46 47 5.877564 GCAGAAGCTACCTCATTAAGTCTTT 59.122 40.000 0.00 0.00 37.91 2.52
47 48 6.372937 GCAGAAGCTACCTCATTAAGTCTTTT 59.627 38.462 0.00 0.00 37.91 2.27
48 49 7.094592 GCAGAAGCTACCTCATTAAGTCTTTTT 60.095 37.037 0.00 0.00 37.91 1.94
49 50 9.436957 CAGAAGCTACCTCATTAAGTCTTTTTA 57.563 33.333 0.00 0.00 0.00 1.52
50 51 9.660180 AGAAGCTACCTCATTAAGTCTTTTTAG 57.340 33.333 0.00 0.00 0.00 1.85
51 52 9.438228 GAAGCTACCTCATTAAGTCTTTTTAGT 57.562 33.333 0.00 0.00 0.00 2.24
52 53 9.794719 AAGCTACCTCATTAAGTCTTTTTAGTT 57.205 29.630 0.00 0.00 0.00 2.24
53 54 9.438228 AGCTACCTCATTAAGTCTTTTTAGTTC 57.562 33.333 0.00 0.00 0.00 3.01
54 55 9.438228 GCTACCTCATTAAGTCTTTTTAGTTCT 57.562 33.333 0.00 0.00 0.00 3.01
57 58 9.628500 ACCTCATTAAGTCTTTTTAGTTCTTGT 57.372 29.630 0.00 0.00 0.00 3.16
89 90 7.437713 TTCATGAGTCTAGGTTATCCAATGT 57.562 36.000 0.00 0.00 35.89 2.71
90 91 7.055667 TCATGAGTCTAGGTTATCCAATGTC 57.944 40.000 0.00 0.00 35.89 3.06
91 92 5.515797 TGAGTCTAGGTTATCCAATGTCG 57.484 43.478 0.00 0.00 35.89 4.35
92 93 5.198207 TGAGTCTAGGTTATCCAATGTCGA 58.802 41.667 0.00 0.00 35.89 4.20
93 94 5.655090 TGAGTCTAGGTTATCCAATGTCGAA 59.345 40.000 0.00 0.00 35.89 3.71
94 95 5.903810 AGTCTAGGTTATCCAATGTCGAAC 58.096 41.667 0.00 0.00 35.89 3.95
95 96 5.048507 GTCTAGGTTATCCAATGTCGAACC 58.951 45.833 0.00 0.00 39.93 3.62
97 98 4.138487 AGGTTATCCAATGTCGAACCTC 57.862 45.455 0.00 0.00 45.31 3.85
98 99 3.517901 AGGTTATCCAATGTCGAACCTCA 59.482 43.478 0.00 0.00 45.31 3.86
99 100 4.164221 AGGTTATCCAATGTCGAACCTCAT 59.836 41.667 0.00 0.00 45.31 2.90
100 101 5.365605 AGGTTATCCAATGTCGAACCTCATA 59.634 40.000 0.00 0.00 45.31 2.15
101 102 6.053005 GGTTATCCAATGTCGAACCTCATAA 58.947 40.000 0.00 0.00 37.23 1.90
102 103 6.540914 GGTTATCCAATGTCGAACCTCATAAA 59.459 38.462 0.00 0.00 37.23 1.40
103 104 7.407337 GTTATCCAATGTCGAACCTCATAAAC 58.593 38.462 0.00 0.00 0.00 2.01
104 105 5.160607 TCCAATGTCGAACCTCATAAACT 57.839 39.130 0.00 0.00 0.00 2.66
105 106 5.556915 TCCAATGTCGAACCTCATAAACTT 58.443 37.500 0.00 0.00 0.00 2.66
106 107 5.411361 TCCAATGTCGAACCTCATAAACTTG 59.589 40.000 0.00 0.00 0.00 3.16
107 108 4.946784 ATGTCGAACCTCATAAACTTGC 57.053 40.909 0.00 0.00 0.00 4.01
108 109 4.002906 TGTCGAACCTCATAAACTTGCT 57.997 40.909 0.00 0.00 0.00 3.91
109 110 5.142061 TGTCGAACCTCATAAACTTGCTA 57.858 39.130 0.00 0.00 0.00 3.49
110 111 5.543714 TGTCGAACCTCATAAACTTGCTAA 58.456 37.500 0.00 0.00 0.00 3.09
111 112 5.637810 TGTCGAACCTCATAAACTTGCTAAG 59.362 40.000 0.00 0.00 0.00 2.18
112 113 5.638234 GTCGAACCTCATAAACTTGCTAAGT 59.362 40.000 0.00 0.00 45.46 2.24
122 123 1.532868 ACTTGCTAAGTTTGCTGCTCG 59.467 47.619 10.60 0.00 39.04 5.03
123 124 0.874390 TTGCTAAGTTTGCTGCTCGG 59.126 50.000 10.60 0.00 0.00 4.63
124 125 1.135523 GCTAAGTTTGCTGCTCGGC 59.864 57.895 0.00 0.00 0.00 5.54
125 126 1.301677 GCTAAGTTTGCTGCTCGGCT 61.302 55.000 0.00 0.00 0.00 5.52
126 127 2.007049 GCTAAGTTTGCTGCTCGGCTA 61.007 52.381 0.00 0.00 0.00 3.93
127 128 1.929836 CTAAGTTTGCTGCTCGGCTAG 59.070 52.381 0.00 0.00 0.00 3.42
128 129 0.321671 AAGTTTGCTGCTCGGCTAGA 59.678 50.000 0.00 0.00 0.00 2.43
129 130 0.539051 AGTTTGCTGCTCGGCTAGAT 59.461 50.000 0.00 0.00 0.00 1.98
130 131 0.933796 GTTTGCTGCTCGGCTAGATC 59.066 55.000 0.00 0.00 0.00 2.75
131 132 0.536724 TTTGCTGCTCGGCTAGATCA 59.463 50.000 0.00 0.00 0.00 2.92
132 133 0.103755 TTGCTGCTCGGCTAGATCAG 59.896 55.000 0.00 8.50 43.84 2.90
133 134 1.006337 GCTGCTCGGCTAGATCAGG 60.006 63.158 12.78 0.00 41.91 3.86
134 135 1.664873 CTGCTCGGCTAGATCAGGG 59.335 63.158 0.00 0.00 38.93 4.45
135 136 1.075970 TGCTCGGCTAGATCAGGGT 60.076 57.895 0.00 0.00 0.00 4.34
136 137 1.109920 TGCTCGGCTAGATCAGGGTC 61.110 60.000 0.00 0.00 0.00 4.46
137 138 1.953017 CTCGGCTAGATCAGGGTCG 59.047 63.158 0.00 0.00 0.00 4.79
138 139 2.136196 CTCGGCTAGATCAGGGTCGC 62.136 65.000 0.00 0.00 0.00 5.19
139 140 2.737830 GGCTAGATCAGGGTCGCC 59.262 66.667 0.00 0.00 0.00 5.54
140 141 2.134287 GGCTAGATCAGGGTCGCCA 61.134 63.158 0.00 0.00 37.48 5.69
141 142 1.068250 GCTAGATCAGGGTCGCCAC 59.932 63.158 0.00 0.00 0.00 5.01
142 143 1.742768 CTAGATCAGGGTCGCCACC 59.257 63.158 0.00 0.00 42.90 4.61
143 144 0.757188 CTAGATCAGGGTCGCCACCT 60.757 60.000 0.00 0.00 43.22 4.00
156 157 4.498346 CACCTGTGGATGTGGCAA 57.502 55.556 0.00 0.00 0.00 4.52
157 158 1.959085 CACCTGTGGATGTGGCAAC 59.041 57.895 0.00 0.00 0.00 4.17
158 159 1.228552 ACCTGTGGATGTGGCAACC 60.229 57.895 0.00 0.00 0.00 3.77
159 160 1.075482 CCTGTGGATGTGGCAACCT 59.925 57.895 0.00 0.00 0.00 3.50
160 161 0.962356 CCTGTGGATGTGGCAACCTC 60.962 60.000 0.00 0.00 0.00 3.85
161 162 0.250858 CTGTGGATGTGGCAACCTCA 60.251 55.000 0.00 0.00 31.16 3.86
162 163 0.537143 TGTGGATGTGGCAACCTCAC 60.537 55.000 0.00 0.98 35.82 3.51
164 165 0.184692 TGGATGTGGCAACCTCACAA 59.815 50.000 0.00 0.00 46.41 3.33
165 166 1.203038 TGGATGTGGCAACCTCACAAT 60.203 47.619 0.00 0.00 46.41 2.71
166 167 1.474077 GGATGTGGCAACCTCACAATC 59.526 52.381 0.00 1.07 46.41 2.67
167 168 1.474077 GATGTGGCAACCTCACAATCC 59.526 52.381 0.97 0.00 46.41 3.01
168 169 0.478072 TGTGGCAACCTCACAATCCT 59.522 50.000 0.00 0.00 41.50 3.24
169 170 0.883833 GTGGCAACCTCACAATCCTG 59.116 55.000 0.00 0.00 35.39 3.86
170 171 0.895100 TGGCAACCTCACAATCCTGC 60.895 55.000 0.00 0.00 0.00 4.85
171 172 0.610232 GGCAACCTCACAATCCTGCT 60.610 55.000 0.00 0.00 0.00 4.24
172 173 0.524862 GCAACCTCACAATCCTGCTG 59.475 55.000 0.00 0.00 0.00 4.41
173 174 1.901591 CAACCTCACAATCCTGCTGT 58.098 50.000 0.00 0.00 0.00 4.40
174 175 2.875672 GCAACCTCACAATCCTGCTGTA 60.876 50.000 0.00 0.00 0.00 2.74
175 176 3.411446 CAACCTCACAATCCTGCTGTAA 58.589 45.455 0.00 0.00 0.00 2.41
176 177 4.012374 CAACCTCACAATCCTGCTGTAAT 58.988 43.478 0.00 0.00 0.00 1.89
177 178 3.878778 ACCTCACAATCCTGCTGTAATC 58.121 45.455 0.00 0.00 0.00 1.75
178 179 3.209410 CCTCACAATCCTGCTGTAATCC 58.791 50.000 0.00 0.00 0.00 3.01
179 180 3.209410 CTCACAATCCTGCTGTAATCCC 58.791 50.000 0.00 0.00 0.00 3.85
180 181 2.846206 TCACAATCCTGCTGTAATCCCT 59.154 45.455 0.00 0.00 0.00 4.20
181 182 4.037222 TCACAATCCTGCTGTAATCCCTA 58.963 43.478 0.00 0.00 0.00 3.53
182 183 4.660303 TCACAATCCTGCTGTAATCCCTAT 59.340 41.667 0.00 0.00 0.00 2.57
183 184 5.843969 TCACAATCCTGCTGTAATCCCTATA 59.156 40.000 0.00 0.00 0.00 1.31
184 185 6.328934 TCACAATCCTGCTGTAATCCCTATAA 59.671 38.462 0.00 0.00 0.00 0.98
185 186 6.998074 CACAATCCTGCTGTAATCCCTATAAA 59.002 38.462 0.00 0.00 0.00 1.40
186 187 6.998673 ACAATCCTGCTGTAATCCCTATAAAC 59.001 38.462 0.00 0.00 0.00 2.01
187 188 6.763715 ATCCTGCTGTAATCCCTATAAACA 57.236 37.500 0.00 0.00 0.00 2.83
188 189 6.763715 TCCTGCTGTAATCCCTATAAACAT 57.236 37.500 0.00 0.00 0.00 2.71
189 190 7.149202 TCCTGCTGTAATCCCTATAAACATT 57.851 36.000 0.00 0.00 0.00 2.71
190 191 7.582719 TCCTGCTGTAATCCCTATAAACATTT 58.417 34.615 0.00 0.00 0.00 2.32
191 192 7.719633 TCCTGCTGTAATCCCTATAAACATTTC 59.280 37.037 0.00 0.00 0.00 2.17
192 193 7.502226 CCTGCTGTAATCCCTATAAACATTTCA 59.498 37.037 0.00 0.00 0.00 2.69
193 194 8.995027 TGCTGTAATCCCTATAAACATTTCAT 57.005 30.769 0.00 0.00 0.00 2.57
194 195 9.420118 TGCTGTAATCCCTATAAACATTTCATT 57.580 29.630 0.00 0.00 0.00 2.57
216 217 9.905713 TCATTAGATGAATAAAGTTTAGCAGGT 57.094 29.630 1.21 0.00 36.11 4.00
221 222 9.301897 AGATGAATAAAGTTTAGCAGGTTTTCT 57.698 29.630 1.21 0.19 0.00 2.52
222 223 9.561270 GATGAATAAAGTTTAGCAGGTTTTCTC 57.439 33.333 1.21 0.00 0.00 2.87
223 224 8.458573 TGAATAAAGTTTAGCAGGTTTTCTCA 57.541 30.769 1.21 0.00 0.00 3.27
224 225 8.908903 TGAATAAAGTTTAGCAGGTTTTCTCAA 58.091 29.630 1.21 0.00 0.00 3.02
225 226 9.744468 GAATAAAGTTTAGCAGGTTTTCTCAAA 57.256 29.630 1.21 0.00 0.00 2.69
230 231 9.750125 AAGTTTAGCAGGTTTTCTCAAAATAAG 57.250 29.630 0.00 0.00 32.22 1.73
231 232 8.914011 AGTTTAGCAGGTTTTCTCAAAATAAGT 58.086 29.630 0.00 0.00 32.22 2.24
272 273 8.762481 ATTAGCTTAAAAACCCTGGTAATAGG 57.238 34.615 0.00 0.00 37.59 2.57
273 274 6.148735 AGCTTAAAAACCCTGGTAATAGGT 57.851 37.500 0.00 0.00 36.02 3.08
274 275 6.558498 AGCTTAAAAACCCTGGTAATAGGTT 58.442 36.000 0.00 0.00 45.79 3.50
314 315 3.610911 ACCCTCGGAGTCAAAATTCATC 58.389 45.455 4.02 0.00 0.00 2.92
316 317 3.873952 CCCTCGGAGTCAAAATTCATCTC 59.126 47.826 4.02 0.00 0.00 2.75
503 506 3.077556 ACAGCGGCTCCCAGTAGG 61.078 66.667 0.00 0.00 0.00 3.18
504 507 4.537433 CAGCGGCTCCCAGTAGGC 62.537 72.222 0.00 0.00 38.63 3.93
506 509 4.537433 GCGGCTCCCAGTAGGCAG 62.537 72.222 0.00 0.00 41.95 4.85
507 510 3.077556 CGGCTCCCAGTAGGCAGT 61.078 66.667 0.00 0.00 41.95 4.40
544 554 2.478890 CGACGGCGACTCCCACTAT 61.479 63.158 16.62 0.00 40.82 2.12
654 666 0.673644 CTCCGTCCACAATTTCGGCT 60.674 55.000 0.00 0.00 42.28 5.52
710 722 2.590282 GTTAGCTAAACCCCACCCAA 57.410 50.000 7.99 0.00 31.38 4.12
722 734 1.202348 CCCACCCAAGCGAGAAATTTC 59.798 52.381 10.33 10.33 0.00 2.17
777 790 3.069586 CCATCTAGATCTGCCCGTGTTTA 59.930 47.826 5.18 0.00 0.00 2.01
811 824 1.079057 GGAACCCGACCTCAGCTTC 60.079 63.158 0.00 0.00 0.00 3.86
832 847 0.732196 GCGCGTTGCAATTGGATGAA 60.732 50.000 8.43 0.00 45.45 2.57
894 913 0.618458 TTTTGAGTAGCGGGCCTGAT 59.382 50.000 18.31 13.10 0.00 2.90
895 914 0.618458 TTTGAGTAGCGGGCCTGATT 59.382 50.000 18.31 4.82 0.00 2.57
928 948 5.508567 TCCCATGTGCAGAGATAATTTTGA 58.491 37.500 0.00 0.00 0.00 2.69
995 1015 0.249657 GAGGTCCTATGCTGCCTTCG 60.250 60.000 0.00 0.00 0.00 3.79
1151 1171 4.225267 CCAAGGTACACCCTCTCAAATACT 59.775 45.833 0.00 0.00 45.47 2.12
1152 1172 5.420409 CAAGGTACACCCTCTCAAATACTC 58.580 45.833 0.00 0.00 45.47 2.59
1153 1173 4.031611 AGGTACACCCTCTCAAATACTCC 58.968 47.826 0.00 0.00 40.71 3.85
1154 1174 3.134262 GGTACACCCTCTCAAATACTCCC 59.866 52.174 0.00 0.00 0.00 4.30
1156 1176 3.108376 ACACCCTCTCAAATACTCCCTC 58.892 50.000 0.00 0.00 0.00 4.30
1157 1177 3.107601 CACCCTCTCAAATACTCCCTCA 58.892 50.000 0.00 0.00 0.00 3.86
1158 1178 3.133721 CACCCTCTCAAATACTCCCTCAG 59.866 52.174 0.00 0.00 0.00 3.35
1159 1179 3.246167 ACCCTCTCAAATACTCCCTCAGT 60.246 47.826 0.00 0.00 39.41 3.41
1160 1180 3.386402 CCCTCTCAAATACTCCCTCAGTC 59.614 52.174 0.00 0.00 36.43 3.51
1161 1181 3.386402 CCTCTCAAATACTCCCTCAGTCC 59.614 52.174 0.00 0.00 36.43 3.85
1162 1182 3.024547 TCTCAAATACTCCCTCAGTCCG 58.975 50.000 0.00 0.00 36.43 4.79
1163 1183 2.101582 CTCAAATACTCCCTCAGTCCGG 59.898 54.545 0.00 0.00 36.43 5.14
1164 1184 2.108168 CAAATACTCCCTCAGTCCGGA 58.892 52.381 0.00 0.00 36.43 5.14
1165 1185 2.500098 CAAATACTCCCTCAGTCCGGAA 59.500 50.000 5.23 0.00 36.43 4.30
1166 1186 2.544844 ATACTCCCTCAGTCCGGAAA 57.455 50.000 5.23 0.00 36.43 3.13
1167 1187 2.544844 TACTCCCTCAGTCCGGAAAT 57.455 50.000 5.23 0.00 36.43 2.17
1168 1188 0.905357 ACTCCCTCAGTCCGGAAATG 59.095 55.000 5.23 8.90 0.00 2.32
1169 1189 0.462759 CTCCCTCAGTCCGGAAATGC 60.463 60.000 5.23 0.00 0.00 3.56
1170 1190 0.909610 TCCCTCAGTCCGGAAATGCT 60.910 55.000 5.23 0.00 0.00 3.79
1171 1191 0.035056 CCCTCAGTCCGGAAATGCTT 60.035 55.000 5.23 0.00 0.00 3.91
1172 1192 1.089920 CCTCAGTCCGGAAATGCTTG 58.910 55.000 5.23 2.44 0.00 4.01
1173 1193 1.611673 CCTCAGTCCGGAAATGCTTGT 60.612 52.381 5.23 0.00 0.00 3.16
1174 1194 1.734465 CTCAGTCCGGAAATGCTTGTC 59.266 52.381 5.23 0.00 0.00 3.18
1175 1195 0.804989 CAGTCCGGAAATGCTTGTCC 59.195 55.000 5.23 0.00 0.00 4.02
1176 1196 0.693049 AGTCCGGAAATGCTTGTCCT 59.307 50.000 5.23 0.00 0.00 3.85
1177 1197 1.906574 AGTCCGGAAATGCTTGTCCTA 59.093 47.619 5.23 0.00 0.00 2.94
1178 1198 2.093447 AGTCCGGAAATGCTTGTCCTAG 60.093 50.000 5.23 0.00 0.00 3.02
1179 1199 2.093658 GTCCGGAAATGCTTGTCCTAGA 60.094 50.000 5.23 1.53 0.00 2.43
1180 1200 2.569853 TCCGGAAATGCTTGTCCTAGAA 59.430 45.455 0.00 0.00 0.00 2.10
1181 1201 3.008594 TCCGGAAATGCTTGTCCTAGAAA 59.991 43.478 0.00 0.00 0.00 2.52
1182 1202 3.947834 CCGGAAATGCTTGTCCTAGAAAT 59.052 43.478 0.00 0.00 0.00 2.17
1183 1203 4.201950 CCGGAAATGCTTGTCCTAGAAATG 60.202 45.833 0.00 0.00 0.00 2.32
1184 1204 4.635765 CGGAAATGCTTGTCCTAGAAATGA 59.364 41.667 7.20 0.00 0.00 2.57
1185 1205 5.123820 CGGAAATGCTTGTCCTAGAAATGAA 59.876 40.000 7.20 0.00 0.00 2.57
1186 1206 6.183360 CGGAAATGCTTGTCCTAGAAATGAAT 60.183 38.462 7.20 0.00 0.00 2.57
1187 1207 7.012327 CGGAAATGCTTGTCCTAGAAATGAATA 59.988 37.037 7.20 0.00 0.00 1.75
1188 1208 8.686334 GGAAATGCTTGTCCTAGAAATGAATAA 58.314 33.333 1.42 0.00 0.00 1.40
1193 1213 9.859427 TGCTTGTCCTAGAAATGAATAAAATTG 57.141 29.630 0.00 0.00 0.00 2.32
1194 1214 9.860898 GCTTGTCCTAGAAATGAATAAAATTGT 57.139 29.630 0.00 0.00 0.00 2.71
1233 1253 7.923414 AAACAAGTCTAGATACAACCATTCC 57.077 36.000 0.00 0.00 0.00 3.01
1234 1254 6.875972 ACAAGTCTAGATACAACCATTCCT 57.124 37.500 0.00 0.00 0.00 3.36
1235 1255 7.973048 ACAAGTCTAGATACAACCATTCCTA 57.027 36.000 0.00 0.00 0.00 2.94
1236 1256 8.012957 ACAAGTCTAGATACAACCATTCCTAG 57.987 38.462 0.00 0.00 0.00 3.02
1237 1257 7.070074 ACAAGTCTAGATACAACCATTCCTAGG 59.930 40.741 0.82 0.82 0.00 3.02
1238 1258 6.923670 AGTCTAGATACAACCATTCCTAGGA 58.076 40.000 7.62 7.62 0.00 2.94
1239 1259 6.778559 AGTCTAGATACAACCATTCCTAGGAC 59.221 42.308 12.22 0.00 0.00 3.85
1240 1260 6.550108 GTCTAGATACAACCATTCCTAGGACA 59.450 42.308 12.22 3.40 0.00 4.02
1241 1261 7.069578 GTCTAGATACAACCATTCCTAGGACAA 59.930 40.741 12.22 0.00 0.00 3.18
1242 1262 6.240549 AGATACAACCATTCCTAGGACAAG 57.759 41.667 12.22 5.23 0.00 3.16
1243 1263 5.726793 AGATACAACCATTCCTAGGACAAGT 59.273 40.000 12.22 5.93 0.00 3.16
1244 1264 6.901300 AGATACAACCATTCCTAGGACAAGTA 59.099 38.462 12.22 9.23 0.00 2.24
1245 1265 7.569111 AGATACAACCATTCCTAGGACAAGTAT 59.431 37.037 12.22 13.30 0.00 2.12
1246 1266 6.388619 ACAACCATTCCTAGGACAAGTATT 57.611 37.500 12.22 0.00 0.00 1.89
1247 1267 6.790319 ACAACCATTCCTAGGACAAGTATTT 58.210 36.000 12.22 0.00 0.00 1.40
1248 1268 6.884836 ACAACCATTCCTAGGACAAGTATTTC 59.115 38.462 12.22 0.00 0.00 2.17
1249 1269 6.002653 ACCATTCCTAGGACAAGTATTTCC 57.997 41.667 12.22 0.00 0.00 3.13
1250 1270 5.057149 CCATTCCTAGGACAAGTATTTCCG 58.943 45.833 12.22 0.00 36.95 4.30
1251 1271 4.748277 TTCCTAGGACAAGTATTTCCGG 57.252 45.455 12.22 0.00 36.95 5.14
1252 1272 3.985127 TCCTAGGACAAGTATTTCCGGA 58.015 45.455 7.62 0.00 36.95 5.14
1253 1273 3.703052 TCCTAGGACAAGTATTTCCGGAC 59.297 47.826 7.62 0.00 36.95 4.79
1254 1274 2.667473 AGGACAAGTATTTCCGGACG 57.333 50.000 1.83 0.00 36.95 4.79
1255 1275 1.206371 AGGACAAGTATTTCCGGACGG 59.794 52.381 1.83 3.96 36.95 4.79
1256 1276 1.205417 GGACAAGTATTTCCGGACGGA 59.795 52.381 1.83 9.76 43.52 4.69
1257 1277 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
1258 1278 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
1259 1279 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
1304 1324 1.603456 TGCTTTGATTGCCGACTCAA 58.397 45.000 0.00 0.00 0.00 3.02
1379 1400 1.098050 GGTTTCCTACAGCAGCATGG 58.902 55.000 0.00 0.00 35.86 3.66
1522 1543 4.808558 ACATGTGCATTATGTGTTGGAAC 58.191 39.130 15.99 0.00 37.38 3.62
1601 1622 1.341080 ATGCAAAGGGAAAGTGGGTG 58.659 50.000 0.00 0.00 0.00 4.61
1810 1831 1.548719 TGCGTCAGCTTACATACTGGT 59.451 47.619 0.00 0.00 45.42 4.00
2069 2091 2.695666 TGGTCTGCTAGCCTATCTGAAC 59.304 50.000 13.29 4.38 0.00 3.18
2138 2160 3.197766 TCTTGATCGGCCAGTAACATTCT 59.802 43.478 2.24 0.00 0.00 2.40
2176 2198 6.878923 TCCATGGTTTTGATGTTCTAGTACTG 59.121 38.462 12.58 0.00 0.00 2.74
2261 2283 0.542333 GGAGCCTGTAGGGAAAGGTC 59.458 60.000 0.00 0.00 35.86 3.85
2489 2511 0.888285 AAGTGACTTGCCTGCAGAGC 60.888 55.000 17.39 17.32 0.00 4.09
2531 2553 9.178758 CTCAGGTTAAGCTTTTGGATATTACTT 57.821 33.333 3.20 0.00 0.00 2.24
2687 2709 8.198109 AGATTTAGTACCTGTATACTGCACTTG 58.802 37.037 15.53 2.49 36.09 3.16
2735 2757 5.243954 GGCCCAAGAATCTATTAATGTTCCC 59.756 44.000 0.00 0.00 0.00 3.97
2743 2765 2.799126 ATTAATGTTCCCGCTGGTGA 57.201 45.000 0.00 0.00 0.00 4.02
2766 2788 2.549754 CTGTACAGGGTGAACTGCTTTG 59.450 50.000 15.49 0.00 42.21 2.77
2829 2851 0.255604 TGGTCATCCATCCATGCGTT 59.744 50.000 0.00 0.00 39.03 4.84
2840 2862 0.955178 CCATGCGTTGGTGGTTAACA 59.045 50.000 8.10 0.00 40.99 2.41
2864 2886 8.043113 ACAGTGTCAAGATGATAGCATTCTTTA 58.957 33.333 0.00 0.00 34.11 1.85
2867 2889 8.119226 GTGTCAAGATGATAGCATTCTTTACAC 58.881 37.037 21.15 21.15 38.20 2.90
2892 2914 7.681939 TGTATTACAGTTGGTTTCAGATTCC 57.318 36.000 0.00 0.00 0.00 3.01
2902 2924 1.120530 TTCAGATTCCTAGCCCCGTC 58.879 55.000 0.00 0.00 0.00 4.79
2914 2936 0.755698 GCCCCGTCTCAGACCAGATA 60.756 60.000 0.00 0.00 0.00 1.98
2918 2940 1.380524 CGTCTCAGACCAGATACGGT 58.619 55.000 0.00 0.00 43.91 4.83
2924 2946 5.764192 GTCTCAGACCAGATACGGTATTAGT 59.236 44.000 1.57 0.74 40.22 2.24
2969 2998 2.113139 CCCAGGCACGTCAAACCT 59.887 61.111 0.00 0.00 0.00 3.50
2970 2999 1.528309 CCCAGGCACGTCAAACCTT 60.528 57.895 0.00 0.00 0.00 3.50
2971 3000 1.515521 CCCAGGCACGTCAAACCTTC 61.516 60.000 0.00 0.00 0.00 3.46
2981 3010 5.449451 GCACGTCAAACCTTCCTTTTCTTTA 60.449 40.000 0.00 0.00 0.00 1.85
2995 3024 8.189119 TCCTTTTCTTTACTGTAAAATGCCAT 57.811 30.769 13.46 0.00 0.00 4.40
3005 3038 7.100458 ACTGTAAAATGCCATTATCCAGTTC 57.900 36.000 8.94 0.00 0.00 3.01
3057 3102 8.592105 AATGTTCATACAAATTGACCAAAGTG 57.408 30.769 0.00 0.00 37.91 3.16
3058 3103 7.340122 TGTTCATACAAATTGACCAAAGTGA 57.660 32.000 0.00 0.00 0.00 3.41
3059 3104 7.199766 TGTTCATACAAATTGACCAAAGTGAC 58.800 34.615 0.00 0.00 0.00 3.67
3061 3106 7.523293 TCATACAAATTGACCAAAGTGACAT 57.477 32.000 0.00 0.00 0.00 3.06
3064 3109 9.292846 CATACAAATTGACCAAAGTGACATATG 57.707 33.333 0.00 0.00 0.00 1.78
3065 3110 7.288810 ACAAATTGACCAAAGTGACATATGT 57.711 32.000 8.43 8.43 0.00 2.29
3067 3112 8.203485 ACAAATTGACCAAAGTGACATATGTTT 58.797 29.630 10.30 0.00 0.00 2.83
3069 3114 9.612066 AAATTGACCAAAGTGACATATGTTTTT 57.388 25.926 10.30 8.64 0.00 1.94
3070 3115 8.816640 ATTGACCAAAGTGACATATGTTTTTC 57.183 30.769 10.30 3.56 0.00 2.29
3071 3116 7.340122 TGACCAAAGTGACATATGTTTTTCA 57.660 32.000 10.30 5.92 0.00 2.69
3072 3117 7.424803 TGACCAAAGTGACATATGTTTTTCAG 58.575 34.615 10.30 7.74 0.00 3.02
3073 3118 7.284261 TGACCAAAGTGACATATGTTTTTCAGA 59.716 33.333 10.30 0.00 0.00 3.27
3074 3119 8.181904 ACCAAAGTGACATATGTTTTTCAGAT 57.818 30.769 10.30 0.00 0.00 2.90
3103 3148 3.499918 GTGGAACTTCTGGTTGATGTCTG 59.500 47.826 0.00 0.00 38.41 3.51
3113 3168 5.127845 TCTGGTTGATGTCTGTCTCTTATCC 59.872 44.000 0.00 0.00 0.00 2.59
3114 3169 4.777366 TGGTTGATGTCTGTCTCTTATCCA 59.223 41.667 0.00 0.00 0.00 3.41
3122 3177 6.343703 TGTCTGTCTCTTATCCATGTGATTG 58.656 40.000 2.58 0.00 34.76 2.67
3151 3206 9.499585 CAGTGTAATTGATTTATCTTTCAGCAG 57.500 33.333 0.00 0.00 0.00 4.24
3167 3222 1.204941 AGCAGCGTACTACTTCCTTGG 59.795 52.381 0.00 0.00 0.00 3.61
3174 3229 4.494855 GCGTACTACTTCCTTGGTACTACG 60.495 50.000 0.00 0.00 36.27 3.51
3210 3265 1.004628 TCAAATGGCTCAGGCTTGCTA 59.995 47.619 0.00 3.83 38.73 3.49
3214 3269 0.110295 TGGCTCAGGCTTGCTACAAA 59.890 50.000 0.00 0.00 38.73 2.83
3235 3290 1.623542 ATAGGTGGTTCGGGGCTGAC 61.624 60.000 0.00 0.00 0.00 3.51
3240 3295 0.893270 TGGTTCGGGGCTGACAAATG 60.893 55.000 0.00 0.00 0.00 2.32
3241 3296 1.595093 GGTTCGGGGCTGACAAATGG 61.595 60.000 0.00 0.00 0.00 3.16
3269 3324 3.565482 GCAGTGATGTCAGTTTTTCAGGA 59.435 43.478 0.00 0.00 0.00 3.86
3291 3346 8.031277 CAGGAAAAAGGATGAAAAGAACATAGG 58.969 37.037 0.00 0.00 0.00 2.57
3292 3347 7.950124 AGGAAAAAGGATGAAAAGAACATAGGA 59.050 33.333 0.00 0.00 0.00 2.94
3306 3361 7.573968 AGAACATAGGAATAAGCATTGAACC 57.426 36.000 0.00 0.00 0.00 3.62
3325 3380 3.019564 ACCTAACCAAGCATCAATCTGC 58.980 45.455 0.00 0.00 42.62 4.26
3327 3382 3.444742 CCTAACCAAGCATCAATCTGCAA 59.555 43.478 0.00 0.00 44.77 4.08
3332 3387 3.066342 CCAAGCATCAATCTGCAACTAGG 59.934 47.826 0.00 0.00 44.77 3.02
3333 3388 3.641434 AGCATCAATCTGCAACTAGGT 57.359 42.857 0.00 0.00 44.77 3.08
3346 3401 3.954258 GCAACTAGGTAGGATTTGGCAAT 59.046 43.478 0.00 0.00 0.00 3.56
3368 3423 3.879295 TGCTTCCTTTGCATCATACTAGC 59.121 43.478 0.00 0.00 35.31 3.42
3369 3424 4.133078 GCTTCCTTTGCATCATACTAGCT 58.867 43.478 0.00 0.00 0.00 3.32
3370 3425 4.578105 GCTTCCTTTGCATCATACTAGCTT 59.422 41.667 0.00 0.00 0.00 3.74
3371 3426 5.067023 GCTTCCTTTGCATCATACTAGCTTT 59.933 40.000 0.00 0.00 0.00 3.51
3382 3437 7.519649 GCATCATACTAGCTTTGGTTCAGATTC 60.520 40.741 0.00 0.00 0.00 2.52
3390 3445 4.095632 GCTTTGGTTCAGATTCCTAGCTTC 59.904 45.833 0.00 0.00 33.10 3.86
3397 3452 4.302067 TCAGATTCCTAGCTTCTGGGATT 58.698 43.478 11.50 0.00 40.72 3.01
3407 3463 3.525199 AGCTTCTGGGATTAGTGTGGAAT 59.475 43.478 0.00 0.00 0.00 3.01
3414 3470 3.565902 GGGATTAGTGTGGAATTAGCTGC 59.434 47.826 0.00 0.00 0.00 5.25
3435 3491 3.059834 GCGTAAAATCGACGTTGAAGCTA 59.940 43.478 10.11 0.00 42.31 3.32
3436 3492 4.775083 GCGTAAAATCGACGTTGAAGCTAG 60.775 45.833 10.11 1.75 42.31 3.42
3437 3493 4.322804 CGTAAAATCGACGTTGAAGCTAGT 59.677 41.667 10.11 0.00 35.58 2.57
3438 3494 4.647291 AAAATCGACGTTGAAGCTAGTG 57.353 40.909 10.11 0.00 0.00 2.74
3439 3495 3.299340 AATCGACGTTGAAGCTAGTGT 57.701 42.857 10.11 0.00 0.00 3.55
3440 3496 4.430137 AATCGACGTTGAAGCTAGTGTA 57.570 40.909 10.11 0.00 0.00 2.90
3441 3497 3.902261 TCGACGTTGAAGCTAGTGTAA 57.098 42.857 2.05 0.00 0.00 2.41
3442 3498 4.227512 TCGACGTTGAAGCTAGTGTAAA 57.772 40.909 2.05 0.00 0.00 2.01
3443 3499 4.609947 TCGACGTTGAAGCTAGTGTAAAA 58.390 39.130 2.05 0.00 0.00 1.52
3444 3500 5.042593 TCGACGTTGAAGCTAGTGTAAAAA 58.957 37.500 2.05 0.00 0.00 1.94
3445 3501 5.693104 TCGACGTTGAAGCTAGTGTAAAAAT 59.307 36.000 2.05 0.00 0.00 1.82
3446 3502 5.783654 CGACGTTGAAGCTAGTGTAAAAATG 59.216 40.000 0.00 0.00 0.00 2.32
3447 3503 5.997385 ACGTTGAAGCTAGTGTAAAAATGG 58.003 37.500 0.00 0.00 0.00 3.16
3448 3504 5.529800 ACGTTGAAGCTAGTGTAAAAATGGT 59.470 36.000 0.00 0.00 0.00 3.55
3449 3505 6.707161 ACGTTGAAGCTAGTGTAAAAATGGTA 59.293 34.615 0.00 0.00 0.00 3.25
3450 3506 7.013529 CGTTGAAGCTAGTGTAAAAATGGTAC 58.986 38.462 0.00 0.00 0.00 3.34
3467 3523 5.621197 TGGTACAGTTTTGCATGTGTATC 57.379 39.130 0.89 2.10 0.00 2.24
3468 3524 5.066593 TGGTACAGTTTTGCATGTGTATCA 58.933 37.500 0.89 4.46 34.80 2.15
3469 3525 5.709631 TGGTACAGTTTTGCATGTGTATCAT 59.290 36.000 0.89 0.00 32.75 2.45
3470 3526 6.881602 TGGTACAGTTTTGCATGTGTATCATA 59.118 34.615 0.89 0.00 32.75 2.15
3471 3527 7.555914 TGGTACAGTTTTGCATGTGTATCATAT 59.444 33.333 0.89 0.00 32.75 1.78
3472 3528 9.051679 GGTACAGTTTTGCATGTGTATCATATA 57.948 33.333 0.89 0.00 34.67 0.86
3509 3565 8.438676 AGCTCATACAAGTATACAATTTGACC 57.561 34.615 5.50 0.00 0.00 4.02
3510 3566 8.046708 AGCTCATACAAGTATACAATTTGACCA 58.953 33.333 5.50 0.00 0.00 4.02
3511 3567 8.673711 GCTCATACAAGTATACAATTTGACCAA 58.326 33.333 5.50 0.00 0.00 3.67
3516 3572 7.657336 ACAAGTATACAATTTGACCAAAGTGG 58.343 34.615 21.65 8.80 46.80 4.00
3546 3602 9.730705 ATGATCATTTAAATATGACGTGGATCT 57.269 29.630 1.18 5.50 37.36 2.75
3547 3603 9.559732 TGATCATTTAAATATGACGTGGATCTT 57.440 29.630 15.92 0.00 37.36 2.40
3550 3606 9.613428 TCATTTAAATATGACGTGGATCTTTCT 57.387 29.630 0.00 0.00 29.82 2.52
3553 3609 9.667107 TTTAAATATGACGTGGATCTTTCTTCT 57.333 29.630 0.00 0.00 0.00 2.85
3554 3610 9.667107 TTAAATATGACGTGGATCTTTCTTCTT 57.333 29.630 0.00 0.00 0.00 2.52
3555 3611 8.567285 AAATATGACGTGGATCTTTCTTCTTT 57.433 30.769 0.00 0.00 0.00 2.52
3556 3612 5.869753 ATGACGTGGATCTTTCTTCTTTG 57.130 39.130 0.00 0.00 0.00 2.77
3557 3613 4.956085 TGACGTGGATCTTTCTTCTTTGA 58.044 39.130 0.00 0.00 0.00 2.69
3558 3614 5.364778 TGACGTGGATCTTTCTTCTTTGAA 58.635 37.500 0.00 0.00 0.00 2.69
3559 3615 5.820423 TGACGTGGATCTTTCTTCTTTGAAA 59.180 36.000 0.00 0.00 35.07 2.69
3560 3616 6.061231 ACGTGGATCTTTCTTCTTTGAAAC 57.939 37.500 0.00 0.00 33.11 2.78
3561 3617 5.008712 ACGTGGATCTTTCTTCTTTGAAACC 59.991 40.000 0.00 0.00 33.11 3.27
3562 3618 5.562890 CGTGGATCTTTCTTCTTTGAAACCC 60.563 44.000 0.00 0.00 33.11 4.11
3563 3619 4.518970 TGGATCTTTCTTCTTTGAAACCCG 59.481 41.667 0.00 0.00 33.11 5.28
3564 3620 3.982576 TCTTTCTTCTTTGAAACCCGC 57.017 42.857 0.00 0.00 33.11 6.13
3565 3621 3.283751 TCTTTCTTCTTTGAAACCCGCA 58.716 40.909 0.00 0.00 33.11 5.69
3566 3622 3.066203 TCTTTCTTCTTTGAAACCCGCAC 59.934 43.478 0.00 0.00 33.11 5.34
3567 3623 2.045561 TCTTCTTTGAAACCCGCACA 57.954 45.000 0.00 0.00 0.00 4.57
3568 3624 2.370349 TCTTCTTTGAAACCCGCACAA 58.630 42.857 0.00 0.00 0.00 3.33
3569 3625 2.755655 TCTTCTTTGAAACCCGCACAAA 59.244 40.909 0.00 0.00 33.49 2.83
3570 3626 3.193691 TCTTCTTTGAAACCCGCACAAAA 59.806 39.130 0.00 0.00 34.03 2.44
3571 3627 3.594603 TCTTTGAAACCCGCACAAAAA 57.405 38.095 0.00 0.00 34.03 1.94
3572 3628 4.130286 TCTTTGAAACCCGCACAAAAAT 57.870 36.364 0.00 0.00 34.03 1.82
3573 3629 3.868077 TCTTTGAAACCCGCACAAAAATG 59.132 39.130 0.00 0.00 34.03 2.32
3574 3630 2.231215 TGAAACCCGCACAAAAATGG 57.769 45.000 0.00 0.00 0.00 3.16
3575 3631 1.757118 TGAAACCCGCACAAAAATGGA 59.243 42.857 0.00 0.00 0.00 3.41
3576 3632 2.223923 TGAAACCCGCACAAAAATGGAG 60.224 45.455 0.00 0.00 0.00 3.86
3577 3633 0.033366 AACCCGCACAAAAATGGAGC 59.967 50.000 0.00 0.00 0.00 4.70
3578 3634 0.827507 ACCCGCACAAAAATGGAGCT 60.828 50.000 0.00 0.00 0.00 4.09
3579 3635 0.318120 CCCGCACAAAAATGGAGCTT 59.682 50.000 0.00 0.00 0.00 3.74
3580 3636 1.270252 CCCGCACAAAAATGGAGCTTT 60.270 47.619 0.00 0.00 0.00 3.51
3581 3637 2.482864 CCGCACAAAAATGGAGCTTTT 58.517 42.857 0.00 0.00 0.00 2.27
3582 3638 2.221517 CCGCACAAAAATGGAGCTTTTG 59.778 45.455 6.32 6.32 45.26 2.44
3583 3639 2.221517 CGCACAAAAATGGAGCTTTTGG 59.778 45.455 11.46 0.00 44.46 3.28
3584 3640 2.031769 GCACAAAAATGGAGCTTTTGGC 60.032 45.455 11.46 8.42 44.46 4.52
3598 3654 5.482686 GCTTTTGGCTGATGTTTTGAAAA 57.517 34.783 0.00 0.00 38.06 2.29
3599 3655 5.878133 GCTTTTGGCTGATGTTTTGAAAAA 58.122 33.333 0.00 0.00 38.06 1.94
3600 3656 5.967088 GCTTTTGGCTGATGTTTTGAAAAAG 59.033 36.000 0.00 0.00 36.77 2.27
3601 3657 6.183360 GCTTTTGGCTGATGTTTTGAAAAAGA 60.183 34.615 8.33 0.00 36.12 2.52
3602 3658 7.626028 GCTTTTGGCTGATGTTTTGAAAAAGAA 60.626 33.333 8.33 0.00 36.12 2.52
3603 3659 7.678947 TTTGGCTGATGTTTTGAAAAAGAAA 57.321 28.000 0.00 0.00 0.00 2.52
3604 3660 7.678947 TTGGCTGATGTTTTGAAAAAGAAAA 57.321 28.000 0.00 0.00 0.00 2.29
3605 3661 7.678947 TGGCTGATGTTTTGAAAAAGAAAAA 57.321 28.000 0.00 0.00 0.00 1.94
3627 3683 6.588348 AAAAACTGTAGCATTTGAAACAGC 57.412 33.333 10.75 0.00 42.44 4.40
3628 3684 3.542712 ACTGTAGCATTTGAAACAGCG 57.457 42.857 10.75 0.00 42.44 5.18
3629 3685 3.138304 ACTGTAGCATTTGAAACAGCGA 58.862 40.909 10.75 0.00 42.44 4.93
3630 3686 3.753272 ACTGTAGCATTTGAAACAGCGAT 59.247 39.130 10.75 0.00 42.44 4.58
3631 3687 4.216257 ACTGTAGCATTTGAAACAGCGATT 59.784 37.500 10.75 0.00 42.44 3.34
3632 3688 4.475028 TGTAGCATTTGAAACAGCGATTG 58.525 39.130 0.00 0.00 0.00 2.67
3633 3689 3.921119 AGCATTTGAAACAGCGATTGA 57.079 38.095 0.00 0.00 0.00 2.57
3634 3690 3.568538 AGCATTTGAAACAGCGATTGAC 58.431 40.909 0.00 0.00 0.00 3.18
3635 3691 3.254166 AGCATTTGAAACAGCGATTGACT 59.746 39.130 0.00 0.00 0.00 3.41
3636 3692 3.983344 GCATTTGAAACAGCGATTGACTT 59.017 39.130 0.00 0.00 0.00 3.01
3637 3693 4.143473 GCATTTGAAACAGCGATTGACTTG 60.143 41.667 0.00 0.00 0.00 3.16
3638 3694 4.630894 TTTGAAACAGCGATTGACTTGT 57.369 36.364 0.00 0.00 0.00 3.16
3639 3695 5.743026 TTTGAAACAGCGATTGACTTGTA 57.257 34.783 0.00 0.00 0.00 2.41
3640 3696 4.725556 TGAAACAGCGATTGACTTGTAC 57.274 40.909 0.00 0.00 0.00 2.90
3641 3697 4.377021 TGAAACAGCGATTGACTTGTACT 58.623 39.130 0.00 0.00 0.00 2.73
3642 3698 4.814234 TGAAACAGCGATTGACTTGTACTT 59.186 37.500 0.00 0.00 0.00 2.24
3643 3699 4.992381 AACAGCGATTGACTTGTACTTC 57.008 40.909 0.00 0.00 0.00 3.01
3644 3700 3.990092 ACAGCGATTGACTTGTACTTCA 58.010 40.909 0.00 0.00 0.00 3.02
3645 3701 4.569943 ACAGCGATTGACTTGTACTTCAT 58.430 39.130 0.00 0.00 0.00 2.57
3646 3702 4.627467 ACAGCGATTGACTTGTACTTCATC 59.373 41.667 0.00 0.00 0.00 2.92
3647 3703 4.033358 CAGCGATTGACTTGTACTTCATCC 59.967 45.833 0.00 0.00 0.00 3.51
3648 3704 3.000322 GCGATTGACTTGTACTTCATCCG 60.000 47.826 0.00 3.01 0.00 4.18
3649 3705 4.174009 CGATTGACTTGTACTTCATCCGT 58.826 43.478 0.00 0.00 0.00 4.69
3650 3706 4.625742 CGATTGACTTGTACTTCATCCGTT 59.374 41.667 0.00 0.00 0.00 4.44
3651 3707 5.220228 CGATTGACTTGTACTTCATCCGTTC 60.220 44.000 0.00 0.00 0.00 3.95
3652 3708 4.866508 TGACTTGTACTTCATCCGTTCT 57.133 40.909 0.00 0.00 0.00 3.01
3653 3709 5.970317 TGACTTGTACTTCATCCGTTCTA 57.030 39.130 0.00 0.00 0.00 2.10
3654 3710 6.335471 TGACTTGTACTTCATCCGTTCTAA 57.665 37.500 0.00 0.00 0.00 2.10
3655 3711 6.751157 TGACTTGTACTTCATCCGTTCTAAA 58.249 36.000 0.00 0.00 0.00 1.85
3656 3712 7.211573 TGACTTGTACTTCATCCGTTCTAAAA 58.788 34.615 0.00 0.00 0.00 1.52
3657 3713 7.876068 TGACTTGTACTTCATCCGTTCTAAAAT 59.124 33.333 0.00 0.00 0.00 1.82
3658 3714 9.362539 GACTTGTACTTCATCCGTTCTAAAATA 57.637 33.333 0.00 0.00 0.00 1.40
3659 3715 9.367444 ACTTGTACTTCATCCGTTCTAAAATAG 57.633 33.333 0.00 0.00 0.00 1.73
3660 3716 9.582431 CTTGTACTTCATCCGTTCTAAAATAGA 57.418 33.333 0.00 0.00 0.00 1.98
3662 3718 9.529325 TGTACTTCATCCGTTCTAAAATAGATG 57.471 33.333 0.00 0.00 34.22 2.90
3663 3719 9.745880 GTACTTCATCCGTTCTAAAATAGATGA 57.254 33.333 0.00 0.00 35.59 2.92
3664 3720 8.649973 ACTTCATCCGTTCTAAAATAGATGAC 57.350 34.615 0.00 0.00 36.40 3.06
3665 3721 7.711339 ACTTCATCCGTTCTAAAATAGATGACC 59.289 37.037 0.00 0.00 36.40 4.02
3666 3722 6.522054 TCATCCGTTCTAAAATAGATGACCC 58.478 40.000 0.00 0.00 33.94 4.46
3667 3723 5.943349 TCCGTTCTAAAATAGATGACCCA 57.057 39.130 0.00 0.00 34.22 4.51
3668 3724 6.302535 TCCGTTCTAAAATAGATGACCCAA 57.697 37.500 0.00 0.00 34.22 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.951229 AATTCTCGTTGGAGGTGGTT 57.049 45.000 0.00 0.00 40.85 3.67
1 2 2.884639 CAAAATTCTCGTTGGAGGTGGT 59.115 45.455 0.00 0.00 40.85 4.16
2 3 2.351738 GCAAAATTCTCGTTGGAGGTGG 60.352 50.000 0.00 0.00 40.85 4.61
3 4 2.293122 TGCAAAATTCTCGTTGGAGGTG 59.707 45.455 0.00 0.00 40.85 4.00
4 5 2.554032 CTGCAAAATTCTCGTTGGAGGT 59.446 45.455 2.17 0.00 38.95 3.85
5 6 2.813754 TCTGCAAAATTCTCGTTGGAGG 59.186 45.455 8.64 0.00 41.84 4.30
6 7 4.470462 CTTCTGCAAAATTCTCGTTGGAG 58.530 43.478 3.45 3.45 42.62 3.86
7 8 3.304659 GCTTCTGCAAAATTCTCGTTGGA 60.305 43.478 0.00 0.00 39.41 3.53
8 9 2.982470 GCTTCTGCAAAATTCTCGTTGG 59.018 45.455 0.00 0.00 39.41 3.77
9 10 3.893720 AGCTTCTGCAAAATTCTCGTTG 58.106 40.909 0.00 0.00 42.74 4.10
10 11 4.083271 GGTAGCTTCTGCAAAATTCTCGTT 60.083 41.667 0.00 0.00 42.74 3.85
11 12 3.437049 GGTAGCTTCTGCAAAATTCTCGT 59.563 43.478 0.00 0.00 42.74 4.18
12 13 3.686726 AGGTAGCTTCTGCAAAATTCTCG 59.313 43.478 0.00 0.00 42.74 4.04
13 14 4.697352 TGAGGTAGCTTCTGCAAAATTCTC 59.303 41.667 0.00 0.00 42.74 2.87
14 15 4.655963 TGAGGTAGCTTCTGCAAAATTCT 58.344 39.130 0.00 0.00 42.74 2.40
15 16 5.573337 ATGAGGTAGCTTCTGCAAAATTC 57.427 39.130 0.00 0.00 42.74 2.17
16 17 5.990120 AATGAGGTAGCTTCTGCAAAATT 57.010 34.783 0.00 0.00 42.74 1.82
17 18 6.660949 ACTTAATGAGGTAGCTTCTGCAAAAT 59.339 34.615 0.00 0.00 42.74 1.82
18 19 6.003950 ACTTAATGAGGTAGCTTCTGCAAAA 58.996 36.000 0.00 0.00 42.74 2.44
19 20 5.560724 ACTTAATGAGGTAGCTTCTGCAAA 58.439 37.500 0.00 0.00 42.74 3.68
20 21 5.046304 AGACTTAATGAGGTAGCTTCTGCAA 60.046 40.000 0.00 0.00 42.74 4.08
21 22 4.467795 AGACTTAATGAGGTAGCTTCTGCA 59.532 41.667 0.00 0.00 42.74 4.41
22 23 5.017294 AGACTTAATGAGGTAGCTTCTGC 57.983 43.478 0.00 0.00 40.05 4.26
23 24 7.913674 AAAAGACTTAATGAGGTAGCTTCTG 57.086 36.000 0.00 0.00 0.00 3.02
24 25 9.660180 CTAAAAAGACTTAATGAGGTAGCTTCT 57.340 33.333 0.00 0.00 0.00 2.85
25 26 9.438228 ACTAAAAAGACTTAATGAGGTAGCTTC 57.562 33.333 0.00 0.00 0.00 3.86
26 27 9.794719 AACTAAAAAGACTTAATGAGGTAGCTT 57.205 29.630 0.00 0.00 0.00 3.74
27 28 9.438228 GAACTAAAAAGACTTAATGAGGTAGCT 57.562 33.333 0.00 0.00 0.00 3.32
28 29 9.438228 AGAACTAAAAAGACTTAATGAGGTAGC 57.562 33.333 0.00 0.00 0.00 3.58
31 32 9.628500 ACAAGAACTAAAAAGACTTAATGAGGT 57.372 29.630 0.00 0.00 0.00 3.85
63 64 9.159254 ACATTGGATAACCTAGACTCATGAATA 57.841 33.333 0.00 0.00 37.04 1.75
64 65 8.038862 ACATTGGATAACCTAGACTCATGAAT 57.961 34.615 0.00 0.00 37.04 2.57
65 66 7.437713 ACATTGGATAACCTAGACTCATGAA 57.562 36.000 0.00 0.00 37.04 2.57
66 67 6.239036 CGACATTGGATAACCTAGACTCATGA 60.239 42.308 0.00 0.00 37.04 3.07
67 68 5.923114 CGACATTGGATAACCTAGACTCATG 59.077 44.000 0.00 0.00 37.04 3.07
68 69 5.833667 TCGACATTGGATAACCTAGACTCAT 59.166 40.000 0.00 0.00 37.04 2.90
69 70 5.198207 TCGACATTGGATAACCTAGACTCA 58.802 41.667 0.00 0.00 37.04 3.41
70 71 5.769484 TCGACATTGGATAACCTAGACTC 57.231 43.478 0.00 0.00 37.04 3.36
71 72 5.163437 GGTTCGACATTGGATAACCTAGACT 60.163 44.000 0.00 0.00 37.27 3.24
72 73 5.048507 GGTTCGACATTGGATAACCTAGAC 58.951 45.833 0.00 0.00 37.27 2.59
73 74 4.960469 AGGTTCGACATTGGATAACCTAGA 59.040 41.667 13.84 0.00 46.19 2.43
74 75 5.277857 AGGTTCGACATTGGATAACCTAG 57.722 43.478 13.84 0.00 46.19 3.02
77 78 3.869065 TGAGGTTCGACATTGGATAACC 58.131 45.455 7.75 7.75 39.92 2.85
78 79 7.280205 AGTTTATGAGGTTCGACATTGGATAAC 59.720 37.037 0.00 0.00 0.00 1.89
79 80 7.335627 AGTTTATGAGGTTCGACATTGGATAA 58.664 34.615 0.00 0.00 0.00 1.75
80 81 6.884832 AGTTTATGAGGTTCGACATTGGATA 58.115 36.000 0.00 0.00 0.00 2.59
81 82 5.745227 AGTTTATGAGGTTCGACATTGGAT 58.255 37.500 0.00 0.00 0.00 3.41
82 83 5.160607 AGTTTATGAGGTTCGACATTGGA 57.839 39.130 0.00 0.00 0.00 3.53
83 84 5.631026 CAAGTTTATGAGGTTCGACATTGG 58.369 41.667 0.00 0.00 0.00 3.16
84 85 5.088739 GCAAGTTTATGAGGTTCGACATTG 58.911 41.667 0.00 0.00 0.00 2.82
85 86 5.003804 AGCAAGTTTATGAGGTTCGACATT 58.996 37.500 0.00 0.00 0.00 2.71
86 87 4.579869 AGCAAGTTTATGAGGTTCGACAT 58.420 39.130 0.00 0.00 0.00 3.06
87 88 4.002906 AGCAAGTTTATGAGGTTCGACA 57.997 40.909 0.00 0.00 0.00 4.35
88 89 5.638234 ACTTAGCAAGTTTATGAGGTTCGAC 59.362 40.000 0.00 0.00 39.04 4.20
89 90 5.790593 ACTTAGCAAGTTTATGAGGTTCGA 58.209 37.500 0.00 0.00 39.04 3.71
102 103 1.532868 CGAGCAGCAAACTTAGCAAGT 59.467 47.619 0.00 0.00 45.46 3.16
103 104 1.135859 CCGAGCAGCAAACTTAGCAAG 60.136 52.381 0.00 0.00 0.00 4.01
104 105 0.874390 CCGAGCAGCAAACTTAGCAA 59.126 50.000 0.00 0.00 0.00 3.91
105 106 1.577328 GCCGAGCAGCAAACTTAGCA 61.577 55.000 0.00 0.00 0.00 3.49
106 107 1.135523 GCCGAGCAGCAAACTTAGC 59.864 57.895 0.00 0.00 0.00 3.09
107 108 1.929836 CTAGCCGAGCAGCAAACTTAG 59.070 52.381 0.00 0.00 34.23 2.18
108 109 1.548719 TCTAGCCGAGCAGCAAACTTA 59.451 47.619 0.00 0.00 34.23 2.24
109 110 0.321671 TCTAGCCGAGCAGCAAACTT 59.678 50.000 0.00 0.00 34.23 2.66
110 111 0.539051 ATCTAGCCGAGCAGCAAACT 59.461 50.000 0.00 0.00 34.23 2.66
111 112 0.933796 GATCTAGCCGAGCAGCAAAC 59.066 55.000 0.00 0.00 34.23 2.93
112 113 0.536724 TGATCTAGCCGAGCAGCAAA 59.463 50.000 0.00 0.00 32.10 3.68
113 114 2.201927 TGATCTAGCCGAGCAGCAA 58.798 52.632 0.00 0.00 32.10 3.91
114 115 3.939564 TGATCTAGCCGAGCAGCA 58.060 55.556 0.00 0.00 32.10 4.41
117 118 1.075970 ACCCTGATCTAGCCGAGCA 60.076 57.895 0.00 0.00 36.46 4.26
118 119 1.663173 GACCCTGATCTAGCCGAGC 59.337 63.158 0.00 0.00 0.00 5.03
119 120 1.953017 CGACCCTGATCTAGCCGAG 59.047 63.158 0.00 0.00 0.00 4.63
120 121 2.194212 GCGACCCTGATCTAGCCGA 61.194 63.158 0.00 0.00 0.00 5.54
121 122 2.336809 GCGACCCTGATCTAGCCG 59.663 66.667 0.00 0.00 0.00 5.52
122 123 2.134287 TGGCGACCCTGATCTAGCC 61.134 63.158 0.00 0.00 44.38 3.93
123 124 1.068250 GTGGCGACCCTGATCTAGC 59.932 63.158 0.00 0.00 0.00 3.42
124 125 0.757188 AGGTGGCGACCCTGATCTAG 60.757 60.000 15.08 0.00 44.40 2.43
125 126 1.043116 CAGGTGGCGACCCTGATCTA 61.043 60.000 18.16 0.00 46.03 1.98
126 127 2.039624 AGGTGGCGACCCTGATCT 59.960 61.111 15.08 0.00 44.40 2.75
127 128 2.187946 CAGGTGGCGACCCTGATC 59.812 66.667 18.16 0.00 46.03 2.92
128 129 2.607750 ACAGGTGGCGACCCTGAT 60.608 61.111 26.75 12.09 46.03 2.90
129 130 3.625897 CACAGGTGGCGACCCTGA 61.626 66.667 26.75 0.00 46.03 3.86
139 140 1.526575 GGTTGCCACATCCACAGGTG 61.527 60.000 0.00 0.00 33.89 4.00
140 141 1.228552 GGTTGCCACATCCACAGGT 60.229 57.895 0.00 0.00 0.00 4.00
141 142 0.962356 GAGGTTGCCACATCCACAGG 60.962 60.000 0.00 0.00 0.00 4.00
142 143 0.250858 TGAGGTTGCCACATCCACAG 60.251 55.000 0.00 0.00 32.39 3.66
143 144 0.537143 GTGAGGTTGCCACATCCACA 60.537 55.000 0.00 0.00 32.39 4.17
144 145 0.537143 TGTGAGGTTGCCACATCCAC 60.537 55.000 0.00 0.71 39.36 4.02
145 146 0.184692 TTGTGAGGTTGCCACATCCA 59.815 50.000 0.00 0.00 43.17 3.41
146 147 1.474077 GATTGTGAGGTTGCCACATCC 59.526 52.381 0.00 0.00 43.17 3.51
147 148 1.474077 GGATTGTGAGGTTGCCACATC 59.526 52.381 0.00 0.00 43.17 3.06
148 149 1.076024 AGGATTGTGAGGTTGCCACAT 59.924 47.619 0.00 0.00 43.17 3.21
149 150 0.478072 AGGATTGTGAGGTTGCCACA 59.522 50.000 0.00 0.00 42.16 4.17
150 151 0.883833 CAGGATTGTGAGGTTGCCAC 59.116 55.000 0.00 0.00 35.23 5.01
151 152 0.895100 GCAGGATTGTGAGGTTGCCA 60.895 55.000 0.00 0.00 0.00 4.92
152 153 0.610232 AGCAGGATTGTGAGGTTGCC 60.610 55.000 0.00 0.00 32.21 4.52
153 154 0.524862 CAGCAGGATTGTGAGGTTGC 59.475 55.000 0.00 0.00 0.00 4.17
154 155 1.901591 ACAGCAGGATTGTGAGGTTG 58.098 50.000 0.00 0.00 0.00 3.77
155 156 3.788227 TTACAGCAGGATTGTGAGGTT 57.212 42.857 0.00 0.00 0.00 3.50
156 157 3.370953 GGATTACAGCAGGATTGTGAGGT 60.371 47.826 0.00 0.00 0.00 3.85
157 158 3.209410 GGATTACAGCAGGATTGTGAGG 58.791 50.000 0.00 0.00 0.00 3.86
158 159 3.118112 AGGGATTACAGCAGGATTGTGAG 60.118 47.826 0.00 0.00 0.00 3.51
159 160 2.846206 AGGGATTACAGCAGGATTGTGA 59.154 45.455 0.00 0.00 0.00 3.58
160 161 3.287867 AGGGATTACAGCAGGATTGTG 57.712 47.619 0.00 0.00 0.00 3.33
161 162 6.763715 TTATAGGGATTACAGCAGGATTGT 57.236 37.500 0.00 0.00 0.00 2.71
162 163 6.998074 TGTTTATAGGGATTACAGCAGGATTG 59.002 38.462 0.00 0.00 0.00 2.67
163 164 7.149202 TGTTTATAGGGATTACAGCAGGATT 57.851 36.000 0.00 0.00 0.00 3.01
164 165 6.763715 TGTTTATAGGGATTACAGCAGGAT 57.236 37.500 0.00 0.00 0.00 3.24
165 166 6.763715 ATGTTTATAGGGATTACAGCAGGA 57.236 37.500 0.00 0.00 0.00 3.86
166 167 7.502226 TGAAATGTTTATAGGGATTACAGCAGG 59.498 37.037 0.00 0.00 0.00 4.85
167 168 8.450578 TGAAATGTTTATAGGGATTACAGCAG 57.549 34.615 0.00 0.00 0.00 4.24
168 169 8.995027 ATGAAATGTTTATAGGGATTACAGCA 57.005 30.769 0.00 0.00 0.00 4.41
190 191 9.905713 ACCTGCTAAACTTTATTCATCTAATGA 57.094 29.630 0.00 0.00 37.55 2.57
195 196 9.301897 AGAAAACCTGCTAAACTTTATTCATCT 57.698 29.630 0.00 0.00 0.00 2.90
196 197 9.561270 GAGAAAACCTGCTAAACTTTATTCATC 57.439 33.333 0.00 0.00 0.00 2.92
197 198 9.077885 TGAGAAAACCTGCTAAACTTTATTCAT 57.922 29.630 0.00 0.00 0.00 2.57
198 199 8.458573 TGAGAAAACCTGCTAAACTTTATTCA 57.541 30.769 0.00 0.00 0.00 2.57
199 200 9.744468 TTTGAGAAAACCTGCTAAACTTTATTC 57.256 29.630 0.00 0.00 0.00 1.75
204 205 9.750125 CTTATTTTGAGAAAACCTGCTAAACTT 57.250 29.630 0.00 0.00 32.37 2.66
205 206 8.914011 ACTTATTTTGAGAAAACCTGCTAAACT 58.086 29.630 0.00 0.00 32.37 2.66
246 247 9.197306 CCTATTACCAGGGTTTTTAAGCTAATT 57.803 33.333 0.00 0.00 31.47 1.40
247 248 8.341513 ACCTATTACCAGGGTTTTTAAGCTAAT 58.658 33.333 0.00 0.00 40.29 1.73
248 249 7.701815 ACCTATTACCAGGGTTTTTAAGCTAA 58.298 34.615 0.00 0.00 40.29 3.09
249 250 7.274772 ACCTATTACCAGGGTTTTTAAGCTA 57.725 36.000 0.00 0.00 40.29 3.32
250 251 6.148735 ACCTATTACCAGGGTTTTTAAGCT 57.851 37.500 0.00 0.00 40.29 3.74
251 252 6.845758 AACCTATTACCAGGGTTTTTAAGC 57.154 37.500 0.00 0.00 39.97 3.09
276 277 6.158344 TCCGAGGGTATATTTGGTAGGAAAAA 59.842 38.462 0.00 0.00 0.00 1.94
277 278 5.666718 TCCGAGGGTATATTTGGTAGGAAAA 59.333 40.000 0.00 0.00 0.00 2.29
278 279 5.218179 TCCGAGGGTATATTTGGTAGGAAA 58.782 41.667 0.00 0.00 0.00 3.13
279 280 4.818447 TCCGAGGGTATATTTGGTAGGAA 58.182 43.478 0.00 0.00 0.00 3.36
280 281 4.140853 ACTCCGAGGGTATATTTGGTAGGA 60.141 45.833 0.00 0.00 0.00 2.94
281 282 4.158015 ACTCCGAGGGTATATTTGGTAGG 58.842 47.826 0.00 0.00 0.00 3.18
282 283 4.831155 TGACTCCGAGGGTATATTTGGTAG 59.169 45.833 0.00 0.00 0.00 3.18
283 284 4.806892 TGACTCCGAGGGTATATTTGGTA 58.193 43.478 0.00 0.00 0.00 3.25
284 285 3.649843 TGACTCCGAGGGTATATTTGGT 58.350 45.455 0.00 0.00 0.00 3.67
285 286 4.682778 TTGACTCCGAGGGTATATTTGG 57.317 45.455 0.00 0.00 0.00 3.28
286 287 7.282224 TGAATTTTGACTCCGAGGGTATATTTG 59.718 37.037 0.00 0.00 0.00 2.32
287 288 7.343357 TGAATTTTGACTCCGAGGGTATATTT 58.657 34.615 0.00 0.00 0.00 1.40
288 289 6.895782 TGAATTTTGACTCCGAGGGTATATT 58.104 36.000 0.00 0.00 0.00 1.28
289 290 6.494666 TGAATTTTGACTCCGAGGGTATAT 57.505 37.500 0.00 0.00 0.00 0.86
293 294 3.264450 AGATGAATTTTGACTCCGAGGGT 59.736 43.478 0.00 0.00 0.00 4.34
544 554 2.604152 GTTTGTGGGTGGGGTGGA 59.396 61.111 0.00 0.00 0.00 4.02
600 612 0.389817 CGCGATGAGGTTGAAGTGGA 60.390 55.000 0.00 0.00 0.00 4.02
604 616 1.084370 GGGACGCGATGAGGTTGAAG 61.084 60.000 15.93 0.00 0.00 3.02
636 648 0.609151 TAGCCGAAATTGTGGACGGA 59.391 50.000 0.00 0.00 46.94 4.69
710 722 1.168714 GCACCCAGAAATTTCTCGCT 58.831 50.000 17.91 0.00 34.74 4.93
777 790 2.344025 GTTCCTTCCAGAACGCGTAAT 58.656 47.619 14.46 0.00 37.04 1.89
838 853 6.536941 TGATTGTGAAATATCGAAATCGTGGA 59.463 34.615 2.41 0.00 40.80 4.02
839 854 6.714492 TGATTGTGAAATATCGAAATCGTGG 58.286 36.000 2.41 0.00 40.80 4.94
995 1015 1.244019 AACACCGCCTTTCATCCTGC 61.244 55.000 0.00 0.00 0.00 4.85
1120 1140 1.555533 GGGTGTACCTTGGGAGAGAAG 59.444 57.143 0.44 0.00 35.85 2.85
1151 1171 0.909610 AGCATTTCCGGACTGAGGGA 60.910 55.000 15.73 0.00 0.00 4.20
1152 1172 0.035056 AAGCATTTCCGGACTGAGGG 60.035 55.000 15.73 0.00 0.00 4.30
1153 1173 1.089920 CAAGCATTTCCGGACTGAGG 58.910 55.000 15.73 3.52 0.00 3.86
1154 1174 1.734465 GACAAGCATTTCCGGACTGAG 59.266 52.381 15.73 7.87 0.00 3.35
1156 1176 0.804989 GGACAAGCATTTCCGGACTG 59.195 55.000 1.83 6.20 0.00 3.51
1157 1177 0.693049 AGGACAAGCATTTCCGGACT 59.307 50.000 1.83 0.00 36.95 3.85
1158 1178 2.093658 TCTAGGACAAGCATTTCCGGAC 60.094 50.000 1.83 0.00 36.95 4.79
1159 1179 2.184533 TCTAGGACAAGCATTTCCGGA 58.815 47.619 0.00 0.00 36.95 5.14
1160 1180 2.691409 TCTAGGACAAGCATTTCCGG 57.309 50.000 0.00 0.00 36.95 5.14
1161 1181 4.635765 TCATTTCTAGGACAAGCATTTCCG 59.364 41.667 0.00 0.00 36.95 4.30
1162 1182 6.515272 TTCATTTCTAGGACAAGCATTTCC 57.485 37.500 0.00 0.00 0.00 3.13
1167 1187 9.859427 CAATTTTATTCATTTCTAGGACAAGCA 57.141 29.630 0.00 0.00 0.00 3.91
1168 1188 9.860898 ACAATTTTATTCATTTCTAGGACAAGC 57.139 29.630 0.00 0.00 0.00 4.01
1207 1227 9.444600 GGAATGGTTGTATCTAGACTTGTTTTA 57.555 33.333 0.00 0.00 0.00 1.52
1208 1228 8.164070 AGGAATGGTTGTATCTAGACTTGTTTT 58.836 33.333 0.00 0.00 0.00 2.43
1209 1229 7.690256 AGGAATGGTTGTATCTAGACTTGTTT 58.310 34.615 0.00 0.00 0.00 2.83
1210 1230 7.259088 AGGAATGGTTGTATCTAGACTTGTT 57.741 36.000 0.00 0.00 0.00 2.83
1211 1231 6.875972 AGGAATGGTTGTATCTAGACTTGT 57.124 37.500 0.00 0.00 0.00 3.16
1212 1232 7.287927 TCCTAGGAATGGTTGTATCTAGACTTG 59.712 40.741 9.71 0.00 0.00 3.16
1213 1233 7.288158 GTCCTAGGAATGGTTGTATCTAGACTT 59.712 40.741 14.65 0.00 0.00 3.01
1214 1234 6.778559 GTCCTAGGAATGGTTGTATCTAGACT 59.221 42.308 14.65 0.00 0.00 3.24
1215 1235 6.550108 TGTCCTAGGAATGGTTGTATCTAGAC 59.450 42.308 14.65 0.00 0.00 2.59
1216 1236 6.679542 TGTCCTAGGAATGGTTGTATCTAGA 58.320 40.000 14.65 0.00 0.00 2.43
1217 1237 6.978674 TGTCCTAGGAATGGTTGTATCTAG 57.021 41.667 14.65 0.00 0.00 2.43
1218 1238 6.901300 ACTTGTCCTAGGAATGGTTGTATCTA 59.099 38.462 14.65 0.00 0.00 1.98
1219 1239 5.726793 ACTTGTCCTAGGAATGGTTGTATCT 59.273 40.000 14.65 0.00 0.00 1.98
1220 1240 5.990668 ACTTGTCCTAGGAATGGTTGTATC 58.009 41.667 14.65 0.00 0.00 2.24
1221 1241 7.691993 ATACTTGTCCTAGGAATGGTTGTAT 57.308 36.000 14.65 12.73 0.00 2.29
1222 1242 7.504926 AATACTTGTCCTAGGAATGGTTGTA 57.495 36.000 14.65 11.11 0.00 2.41
1223 1243 6.388619 AATACTTGTCCTAGGAATGGTTGT 57.611 37.500 14.65 9.32 0.00 3.32
1224 1244 6.318900 GGAAATACTTGTCCTAGGAATGGTTG 59.681 42.308 14.65 3.65 0.00 3.77
1225 1245 6.424032 GGAAATACTTGTCCTAGGAATGGTT 58.576 40.000 14.65 1.55 0.00 3.67
1226 1246 5.396436 CGGAAATACTTGTCCTAGGAATGGT 60.396 44.000 14.65 14.09 0.00 3.55
1227 1247 5.057149 CGGAAATACTTGTCCTAGGAATGG 58.943 45.833 14.65 8.72 0.00 3.16
1228 1248 5.057149 CCGGAAATACTTGTCCTAGGAATG 58.943 45.833 14.65 9.12 0.00 2.67
1229 1249 4.966805 TCCGGAAATACTTGTCCTAGGAAT 59.033 41.667 14.65 0.00 0.00 3.01
1230 1250 4.161001 GTCCGGAAATACTTGTCCTAGGAA 59.839 45.833 14.65 0.00 28.70 3.36
1231 1251 3.703052 GTCCGGAAATACTTGTCCTAGGA 59.297 47.826 5.23 7.62 0.00 2.94
1232 1252 3.490419 CGTCCGGAAATACTTGTCCTAGG 60.490 52.174 5.23 0.82 0.00 3.02
1233 1253 3.490419 CCGTCCGGAAATACTTGTCCTAG 60.490 52.174 5.23 0.00 37.50 3.02
1234 1254 2.428171 CCGTCCGGAAATACTTGTCCTA 59.572 50.000 5.23 0.00 37.50 2.94
1235 1255 1.206371 CCGTCCGGAAATACTTGTCCT 59.794 52.381 5.23 0.00 37.50 3.85
1236 1256 1.205417 TCCGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 42.05 4.02
1237 1257 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
1238 1258 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
1239 1259 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
1240 1260 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
1241 1261 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
1242 1262 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
1243 1263 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
1244 1264 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
1245 1265 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
1246 1266 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
1247 1267 1.856539 AACTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
1248 1268 1.379576 AACTACTCCCTCCGTCCGG 60.380 63.158 0.00 0.00 0.00 5.14
1249 1269 1.807886 CAACTACTCCCTCCGTCCG 59.192 63.158 0.00 0.00 0.00 4.79
1250 1270 0.971447 AGCAACTACTCCCTCCGTCC 60.971 60.000 0.00 0.00 0.00 4.79
1251 1271 1.760192 TAGCAACTACTCCCTCCGTC 58.240 55.000 0.00 0.00 0.00 4.79
1252 1272 2.431057 CAATAGCAACTACTCCCTCCGT 59.569 50.000 0.00 0.00 0.00 4.69
1253 1273 2.431057 ACAATAGCAACTACTCCCTCCG 59.569 50.000 0.00 0.00 0.00 4.63
1254 1274 3.798202 CACAATAGCAACTACTCCCTCC 58.202 50.000 0.00 0.00 0.00 4.30
1255 1275 3.118592 AGCACAATAGCAACTACTCCCTC 60.119 47.826 0.00 0.00 36.85 4.30
1256 1276 2.840651 AGCACAATAGCAACTACTCCCT 59.159 45.455 0.00 0.00 36.85 4.20
1257 1277 3.268023 AGCACAATAGCAACTACTCCC 57.732 47.619 0.00 0.00 36.85 4.30
1258 1278 3.804873 GCTAGCACAATAGCAACTACTCC 59.195 47.826 10.63 0.00 46.12 3.85
1304 1324 3.629087 CCAAAGGAGCATGGAGAGATTT 58.371 45.455 0.00 0.00 39.12 2.17
1379 1400 9.950496 ATACATTATCTCCAATATGTTCCAGTC 57.050 33.333 0.00 0.00 0.00 3.51
1522 1543 9.823647 TTAGGCATAAGAAAGTAATCTTCAGAG 57.176 33.333 0.00 0.00 40.13 3.35
1601 1622 1.377202 TGGCCGTTTCTCATCTGCC 60.377 57.895 0.00 0.00 39.33 4.85
1655 1676 2.791383 TTCGACAAGCCCACATTTTG 57.209 45.000 0.00 0.00 0.00 2.44
1751 1772 5.221843 ACAATACCTGCTCAACAAGTTAGGA 60.222 40.000 6.51 0.00 35.93 2.94
2069 2091 4.448537 TTGTTGTGTTCAAAGGTTCCAG 57.551 40.909 0.00 0.00 35.20 3.86
2138 2160 8.243961 TCAAAACCATGGAAATACTTCTTCAA 57.756 30.769 21.47 0.00 0.00 2.69
2176 2198 2.808543 GTTCCAGTGATGACCAGTGTTC 59.191 50.000 0.00 0.00 43.16 3.18
2182 2204 1.625315 CCTCTGTTCCAGTGATGACCA 59.375 52.381 0.00 0.00 32.61 4.02
2261 2283 0.994995 CGGTTGAGATCTGCAAGTCG 59.005 55.000 0.00 7.80 33.76 4.18
2489 2511 2.416547 CCTGAGTTCCATTTACAGCACG 59.583 50.000 0.00 0.00 0.00 5.34
2531 2553 4.248058 TCATCTCGTAGTTGTGACGTAGA 58.752 43.478 0.00 0.00 41.11 2.59
2535 2557 2.478031 CCCTCATCTCGTAGTTGTGACG 60.478 54.545 0.00 0.00 41.69 4.35
2536 2558 2.159226 CCCCTCATCTCGTAGTTGTGAC 60.159 54.545 0.00 0.00 0.00 3.67
2687 2709 3.696548 CTGGGAGAAAAATGCCCTTACTC 59.303 47.826 0.00 0.00 42.52 2.59
2735 2757 0.179100 CCCTGTACAGATCACCAGCG 60.179 60.000 24.68 3.81 0.00 5.18
2743 2765 2.260822 AGCAGTTCACCCTGTACAGAT 58.739 47.619 24.68 9.08 34.84 2.90
2766 2788 6.349033 GGATGGTTCACAAATAACACTGGTAC 60.349 42.308 0.00 0.00 0.00 3.34
2829 2851 3.916359 TCTTGACACTGTTAACCACCA 57.084 42.857 2.48 0.00 0.00 4.17
2840 2862 8.043113 TGTAAAGAATGCTATCATCTTGACACT 58.957 33.333 1.67 0.00 32.47 3.55
2874 2896 4.327680 GCTAGGAATCTGAAACCAACTGT 58.672 43.478 0.00 0.00 0.00 3.55
2876 2898 3.308473 GGGCTAGGAATCTGAAACCAACT 60.308 47.826 0.00 0.00 0.00 3.16
2877 2899 3.017442 GGGCTAGGAATCTGAAACCAAC 58.983 50.000 0.00 0.00 0.00 3.77
2880 2902 1.475213 CGGGGCTAGGAATCTGAAACC 60.475 57.143 0.00 0.00 0.00 3.27
2881 2903 1.209747 ACGGGGCTAGGAATCTGAAAC 59.790 52.381 0.00 0.00 0.00 2.78
2883 2905 1.120530 GACGGGGCTAGGAATCTGAA 58.879 55.000 0.00 0.00 0.00 3.02
2885 2907 0.676736 GAGACGGGGCTAGGAATCTG 59.323 60.000 0.00 0.00 0.00 2.90
2886 2908 0.261991 TGAGACGGGGCTAGGAATCT 59.738 55.000 0.00 0.00 0.00 2.40
2887 2909 0.676736 CTGAGACGGGGCTAGGAATC 59.323 60.000 0.00 0.00 0.00 2.52
2888 2910 0.261991 TCTGAGACGGGGCTAGGAAT 59.738 55.000 0.00 0.00 0.00 3.01
2889 2911 0.683504 GTCTGAGACGGGGCTAGGAA 60.684 60.000 0.00 0.00 0.00 3.36
2890 2912 1.076923 GTCTGAGACGGGGCTAGGA 60.077 63.158 0.00 0.00 0.00 2.94
2891 2913 2.128507 GGTCTGAGACGGGGCTAGG 61.129 68.421 6.50 0.00 32.65 3.02
2892 2914 1.379977 TGGTCTGAGACGGGGCTAG 60.380 63.158 6.50 0.00 32.65 3.42
2902 2924 6.439599 CAACTAATACCGTATCTGGTCTGAG 58.560 44.000 0.00 0.00 42.62 3.35
2936 2958 3.264450 GCCTGGGGAGCACTACATATATT 59.736 47.826 0.00 0.00 0.00 1.28
2937 2959 2.840651 GCCTGGGGAGCACTACATATAT 59.159 50.000 0.00 0.00 0.00 0.86
2938 2960 2.257207 GCCTGGGGAGCACTACATATA 58.743 52.381 0.00 0.00 0.00 0.86
2969 2998 8.012957 TGGCATTTTACAGTAAAGAAAAGGAA 57.987 30.769 5.88 0.00 0.00 3.36
2970 2999 7.589958 TGGCATTTTACAGTAAAGAAAAGGA 57.410 32.000 5.88 0.00 0.00 3.36
2971 3000 8.831715 AATGGCATTTTACAGTAAAGAAAAGG 57.168 30.769 6.96 0.00 0.00 3.11
2981 3010 6.663093 TGAACTGGATAATGGCATTTTACAGT 59.337 34.615 30.92 30.92 44.05 3.55
2995 3024 3.191162 GCTGCACATTGTGAACTGGATAA 59.809 43.478 20.77 0.00 35.23 1.75
3005 3038 6.068473 ACAGAATATATGCTGCACATTGTG 57.932 37.500 19.23 19.83 40.38 3.33
3045 3078 8.420222 TGAAAAACATATGTCACTTTGGTCAAT 58.580 29.630 9.23 0.00 0.00 2.57
3067 3112 9.231297 CCAGAAGTTCCACTTTATAATCTGAAA 57.769 33.333 0.00 0.00 38.80 2.69
3069 3114 7.918076 ACCAGAAGTTCCACTTTATAATCTGA 58.082 34.615 0.00 0.00 38.80 3.27
3070 3115 8.454106 CAACCAGAAGTTCCACTTTATAATCTG 58.546 37.037 0.00 0.00 38.80 2.90
3071 3116 8.383175 TCAACCAGAAGTTCCACTTTATAATCT 58.617 33.333 0.00 0.00 38.80 2.40
3072 3117 8.561738 TCAACCAGAAGTTCCACTTTATAATC 57.438 34.615 0.00 0.00 38.80 1.75
3073 3118 8.960591 CATCAACCAGAAGTTCCACTTTATAAT 58.039 33.333 0.00 0.00 38.80 1.28
3074 3119 7.942341 ACATCAACCAGAAGTTCCACTTTATAA 59.058 33.333 0.00 0.00 38.80 0.98
3090 3135 5.105187 TGGATAAGAGACAGACATCAACCAG 60.105 44.000 0.00 0.00 0.00 4.00
3098 3143 6.070596 ACAATCACATGGATAAGAGACAGACA 60.071 38.462 0.00 0.00 34.28 3.41
3099 3144 6.344500 ACAATCACATGGATAAGAGACAGAC 58.656 40.000 0.00 0.00 34.28 3.51
3100 3145 6.407412 GGACAATCACATGGATAAGAGACAGA 60.407 42.308 0.00 0.00 34.28 3.41
3101 3146 5.757320 GGACAATCACATGGATAAGAGACAG 59.243 44.000 0.00 0.00 34.28 3.51
3103 3148 5.674525 TGGACAATCACATGGATAAGAGAC 58.325 41.667 0.00 0.00 34.28 3.36
3113 3168 6.499234 TCAATTACACTGGACAATCACATG 57.501 37.500 0.00 0.00 0.00 3.21
3114 3169 7.707624 AATCAATTACACTGGACAATCACAT 57.292 32.000 0.00 0.00 0.00 3.21
3122 3177 9.994432 CTGAAAGATAAATCAATTACACTGGAC 57.006 33.333 0.00 0.00 34.07 4.02
3151 3206 4.914540 GTAGTACCAAGGAAGTAGTACGC 58.085 47.826 0.00 0.00 39.99 4.42
3167 3222 8.385789 TGATTATTCGAGAACAAACGTAGTAC 57.614 34.615 0.00 0.00 45.00 2.73
3174 3229 7.029563 AGCCATTTGATTATTCGAGAACAAAC 58.970 34.615 0.00 0.00 31.77 2.93
3210 3265 1.271707 CCCCGAACCACCTATGTTTGT 60.272 52.381 0.00 0.00 0.00 2.83
3214 3269 1.615424 AGCCCCGAACCACCTATGT 60.615 57.895 0.00 0.00 0.00 2.29
3235 3290 4.202070 TGACATCACTGCATATGCCATTTG 60.202 41.667 24.54 16.65 41.18 2.32
3240 3295 2.569059 ACTGACATCACTGCATATGCC 58.431 47.619 24.54 7.26 41.18 4.40
3241 3296 4.627611 AAACTGACATCACTGCATATGC 57.372 40.909 21.09 21.09 42.50 3.14
3291 3346 6.036470 GCTTGGTTAGGTTCAATGCTTATTC 58.964 40.000 0.00 0.00 0.00 1.75
3292 3347 5.480073 TGCTTGGTTAGGTTCAATGCTTATT 59.520 36.000 0.00 0.00 0.00 1.40
3306 3361 4.157289 AGTTGCAGATTGATGCTTGGTTAG 59.843 41.667 0.00 0.00 46.63 2.34
3325 3380 4.202050 GCATTGCCAAATCCTACCTAGTTG 60.202 45.833 0.00 0.00 0.00 3.16
3327 3382 3.203040 AGCATTGCCAAATCCTACCTAGT 59.797 43.478 4.70 0.00 0.00 2.57
3332 3387 3.026694 AGGAAGCATTGCCAAATCCTAC 58.973 45.455 16.69 0.00 36.97 3.18
3333 3388 3.386932 AGGAAGCATTGCCAAATCCTA 57.613 42.857 16.69 0.00 36.97 2.94
3364 3419 4.813697 GCTAGGAATCTGAACCAAAGCTAG 59.186 45.833 16.43 0.00 35.79 3.42
3365 3420 4.471386 AGCTAGGAATCTGAACCAAAGCTA 59.529 41.667 20.81 3.13 42.04 3.32
3366 3421 3.265479 AGCTAGGAATCTGAACCAAAGCT 59.735 43.478 18.62 18.62 40.42 3.74
3367 3422 3.615155 AGCTAGGAATCTGAACCAAAGC 58.385 45.455 16.18 16.18 37.56 3.51
3368 3423 5.353678 CAGAAGCTAGGAATCTGAACCAAAG 59.646 44.000 6.52 5.23 42.48 2.77
3369 3424 5.248640 CAGAAGCTAGGAATCTGAACCAAA 58.751 41.667 6.52 0.00 42.48 3.28
3370 3425 4.323792 CCAGAAGCTAGGAATCTGAACCAA 60.324 45.833 12.91 0.00 42.48 3.67
3371 3426 3.198635 CCAGAAGCTAGGAATCTGAACCA 59.801 47.826 12.91 0.00 42.48 3.67
3382 3437 3.181461 CCACACTAATCCCAGAAGCTAGG 60.181 52.174 0.00 0.00 0.00 3.02
3390 3445 4.818546 CAGCTAATTCCACACTAATCCCAG 59.181 45.833 0.00 0.00 0.00 4.45
3397 3452 4.459390 TTACGCAGCTAATTCCACACTA 57.541 40.909 0.00 0.00 0.00 2.74
3407 3463 2.598589 ACGTCGATTTTACGCAGCTAA 58.401 42.857 0.00 0.00 44.04 3.09
3414 3470 3.700130 AGCTTCAACGTCGATTTTACG 57.300 42.857 0.00 0.00 45.64 3.18
3435 3491 6.868622 TGCAAAACTGTACCATTTTTACACT 58.131 32.000 2.31 0.00 28.02 3.55
3436 3492 7.223777 ACATGCAAAACTGTACCATTTTTACAC 59.776 33.333 0.00 0.00 27.70 2.90
3437 3493 7.223582 CACATGCAAAACTGTACCATTTTTACA 59.776 33.333 0.00 4.78 28.91 2.41
3438 3494 7.223777 ACACATGCAAAACTGTACCATTTTTAC 59.776 33.333 0.00 0.31 28.02 2.01
3439 3495 7.268586 ACACATGCAAAACTGTACCATTTTTA 58.731 30.769 0.00 0.00 28.02 1.52
3440 3496 6.112058 ACACATGCAAAACTGTACCATTTTT 58.888 32.000 0.00 0.00 28.74 1.94
3441 3497 5.669477 ACACATGCAAAACTGTACCATTTT 58.331 33.333 0.00 0.00 0.00 1.82
3442 3498 5.275067 ACACATGCAAAACTGTACCATTT 57.725 34.783 0.00 0.00 0.00 2.32
3443 3499 4.935352 ACACATGCAAAACTGTACCATT 57.065 36.364 0.00 0.00 0.00 3.16
3444 3500 5.709631 TGATACACATGCAAAACTGTACCAT 59.290 36.000 0.00 0.00 0.00 3.55
3445 3501 5.066593 TGATACACATGCAAAACTGTACCA 58.933 37.500 0.00 0.00 0.00 3.25
3446 3502 5.621197 TGATACACATGCAAAACTGTACC 57.379 39.130 0.00 0.00 0.00 3.34
3483 3539 8.893727 GGTCAAATTGTATACTTGTATGAGCTT 58.106 33.333 4.17 0.00 31.95 3.74
3484 3540 8.046708 TGGTCAAATTGTATACTTGTATGAGCT 58.953 33.333 19.18 0.00 34.77 4.09
3485 3541 8.208718 TGGTCAAATTGTATACTTGTATGAGC 57.791 34.615 4.17 11.45 34.40 4.26
3490 3546 8.788806 CCACTTTGGTCAAATTGTATACTTGTA 58.211 33.333 4.17 0.00 31.51 2.41
3491 3547 7.657336 CCACTTTGGTCAAATTGTATACTTGT 58.343 34.615 4.17 0.00 31.51 3.16
3520 3576 9.730705 AGATCCACGTCATATTTAAATGATCAT 57.269 29.630 11.05 1.18 38.13 2.45
3521 3577 9.559732 AAGATCCACGTCATATTTAAATGATCA 57.440 29.630 11.05 0.00 38.13 2.92
3524 3580 9.613428 AGAAAGATCCACGTCATATTTAAATGA 57.387 29.630 11.05 0.00 33.48 2.57
3527 3583 9.667107 AGAAGAAAGATCCACGTCATATTTAAA 57.333 29.630 0.00 0.00 0.00 1.52
3528 3584 9.667107 AAGAAGAAAGATCCACGTCATATTTAA 57.333 29.630 0.00 0.00 0.00 1.52
3529 3585 9.667107 AAAGAAGAAAGATCCACGTCATATTTA 57.333 29.630 0.00 0.00 0.00 1.40
3530 3586 8.454106 CAAAGAAGAAAGATCCACGTCATATTT 58.546 33.333 0.00 0.00 0.00 1.40
3531 3587 7.824289 TCAAAGAAGAAAGATCCACGTCATATT 59.176 33.333 0.00 0.00 0.00 1.28
3532 3588 7.331026 TCAAAGAAGAAAGATCCACGTCATAT 58.669 34.615 0.00 0.00 0.00 1.78
3533 3589 6.697395 TCAAAGAAGAAAGATCCACGTCATA 58.303 36.000 0.00 0.00 0.00 2.15
3534 3590 5.551233 TCAAAGAAGAAAGATCCACGTCAT 58.449 37.500 0.00 0.00 0.00 3.06
3535 3591 4.956085 TCAAAGAAGAAAGATCCACGTCA 58.044 39.130 0.00 0.00 0.00 4.35
3536 3592 5.924475 TTCAAAGAAGAAAGATCCACGTC 57.076 39.130 0.00 0.00 0.00 4.34
3537 3593 5.008712 GGTTTCAAAGAAGAAAGATCCACGT 59.991 40.000 0.00 0.00 38.11 4.49
3538 3594 5.452777 GGTTTCAAAGAAGAAAGATCCACG 58.547 41.667 0.00 0.00 38.11 4.94
3539 3595 5.562890 CGGGTTTCAAAGAAGAAAGATCCAC 60.563 44.000 0.00 0.00 38.11 4.02
3540 3596 4.518970 CGGGTTTCAAAGAAGAAAGATCCA 59.481 41.667 0.00 0.00 38.11 3.41
3541 3597 4.616143 GCGGGTTTCAAAGAAGAAAGATCC 60.616 45.833 0.00 0.00 38.11 3.36
3542 3598 4.023193 TGCGGGTTTCAAAGAAGAAAGATC 60.023 41.667 0.00 0.00 38.11 2.75
3543 3599 3.888930 TGCGGGTTTCAAAGAAGAAAGAT 59.111 39.130 0.00 0.00 38.11 2.40
3544 3600 3.066203 GTGCGGGTTTCAAAGAAGAAAGA 59.934 43.478 0.00 0.00 38.11 2.52
3545 3601 3.181491 TGTGCGGGTTTCAAAGAAGAAAG 60.181 43.478 0.00 0.00 38.11 2.62
3546 3602 2.755655 TGTGCGGGTTTCAAAGAAGAAA 59.244 40.909 0.00 0.00 35.28 2.52
3547 3603 2.370349 TGTGCGGGTTTCAAAGAAGAA 58.630 42.857 0.00 0.00 0.00 2.52
3548 3604 2.045561 TGTGCGGGTTTCAAAGAAGA 57.954 45.000 0.00 0.00 0.00 2.87
3549 3605 2.861462 TTGTGCGGGTTTCAAAGAAG 57.139 45.000 0.00 0.00 0.00 2.85
3550 3606 3.594603 TTTTGTGCGGGTTTCAAAGAA 57.405 38.095 0.00 0.00 33.61 2.52
3551 3607 3.594603 TTTTTGTGCGGGTTTCAAAGA 57.405 38.095 0.00 0.00 33.61 2.52
3552 3608 3.002144 CCATTTTTGTGCGGGTTTCAAAG 59.998 43.478 0.00 0.00 33.61 2.77
3553 3609 2.939103 CCATTTTTGTGCGGGTTTCAAA 59.061 40.909 0.00 0.00 0.00 2.69
3554 3610 2.168521 TCCATTTTTGTGCGGGTTTCAA 59.831 40.909 0.00 0.00 0.00 2.69
3555 3611 1.757118 TCCATTTTTGTGCGGGTTTCA 59.243 42.857 0.00 0.00 0.00 2.69
3556 3612 2.403259 CTCCATTTTTGTGCGGGTTTC 58.597 47.619 0.00 0.00 0.00 2.78
3557 3613 1.540146 GCTCCATTTTTGTGCGGGTTT 60.540 47.619 0.00 0.00 0.00 3.27
3558 3614 0.033366 GCTCCATTTTTGTGCGGGTT 59.967 50.000 0.00 0.00 0.00 4.11
3559 3615 0.827507 AGCTCCATTTTTGTGCGGGT 60.828 50.000 0.00 0.00 0.00 5.28
3560 3616 0.318120 AAGCTCCATTTTTGTGCGGG 59.682 50.000 0.00 0.00 0.00 6.13
3561 3617 2.153366 AAAGCTCCATTTTTGTGCGG 57.847 45.000 0.00 0.00 0.00 5.69
3562 3618 2.221517 CCAAAAGCTCCATTTTTGTGCG 59.778 45.455 6.98 0.00 41.60 5.34
3563 3619 2.031769 GCCAAAAGCTCCATTTTTGTGC 60.032 45.455 6.98 6.39 41.60 4.57
3564 3620 3.883631 GCCAAAAGCTCCATTTTTGTG 57.116 42.857 6.98 1.31 41.60 3.33
3576 3632 5.482686 TTTTCAAAACATCAGCCAAAAGC 57.517 34.783 0.00 0.00 44.25 3.51
3577 3633 7.306205 TCTTTTTCAAAACATCAGCCAAAAG 57.694 32.000 0.00 0.00 33.27 2.27
3578 3634 7.678947 TTCTTTTTCAAAACATCAGCCAAAA 57.321 28.000 0.00 0.00 0.00 2.44
3579 3635 7.678947 TTTCTTTTTCAAAACATCAGCCAAA 57.321 28.000 0.00 0.00 0.00 3.28
3580 3636 7.678947 TTTTCTTTTTCAAAACATCAGCCAA 57.321 28.000 0.00 0.00 0.00 4.52
3581 3637 7.678947 TTTTTCTTTTTCAAAACATCAGCCA 57.321 28.000 0.00 0.00 0.00 4.75
3604 3660 5.231991 CGCTGTTTCAAATGCTACAGTTTTT 59.768 36.000 12.88 0.00 40.02 1.94
3605 3661 4.739716 CGCTGTTTCAAATGCTACAGTTTT 59.260 37.500 12.88 0.00 40.02 2.43
3606 3662 4.036262 TCGCTGTTTCAAATGCTACAGTTT 59.964 37.500 12.88 0.00 40.02 2.66
3607 3663 3.563808 TCGCTGTTTCAAATGCTACAGTT 59.436 39.130 12.88 0.00 40.02 3.16
3608 3664 3.138304 TCGCTGTTTCAAATGCTACAGT 58.862 40.909 12.88 0.00 40.02 3.55
3609 3665 3.811722 TCGCTGTTTCAAATGCTACAG 57.188 42.857 0.00 0.00 40.65 2.74
3610 3666 4.215185 TCAATCGCTGTTTCAAATGCTACA 59.785 37.500 0.00 0.00 0.00 2.74
3611 3667 4.554973 GTCAATCGCTGTTTCAAATGCTAC 59.445 41.667 0.00 0.00 0.00 3.58
3612 3668 4.455533 AGTCAATCGCTGTTTCAAATGCTA 59.544 37.500 0.00 0.00 0.00 3.49
3613 3669 3.254166 AGTCAATCGCTGTTTCAAATGCT 59.746 39.130 0.00 0.00 0.00 3.79
3614 3670 3.568538 AGTCAATCGCTGTTTCAAATGC 58.431 40.909 0.00 0.00 0.00 3.56
3615 3671 4.977963 ACAAGTCAATCGCTGTTTCAAATG 59.022 37.500 0.00 0.00 0.00 2.32
3616 3672 5.186996 ACAAGTCAATCGCTGTTTCAAAT 57.813 34.783 0.00 0.00 0.00 2.32
3617 3673 4.630894 ACAAGTCAATCGCTGTTTCAAA 57.369 36.364 0.00 0.00 0.00 2.69
3618 3674 4.814234 AGTACAAGTCAATCGCTGTTTCAA 59.186 37.500 0.00 0.00 0.00 2.69
3619 3675 4.377021 AGTACAAGTCAATCGCTGTTTCA 58.623 39.130 0.00 0.00 0.00 2.69
3620 3676 4.992381 AGTACAAGTCAATCGCTGTTTC 57.008 40.909 0.00 0.00 0.00 2.78
3621 3677 4.814234 TGAAGTACAAGTCAATCGCTGTTT 59.186 37.500 0.00 0.00 0.00 2.83
3622 3678 4.377021 TGAAGTACAAGTCAATCGCTGTT 58.623 39.130 0.00 0.00 0.00 3.16
3623 3679 3.990092 TGAAGTACAAGTCAATCGCTGT 58.010 40.909 0.00 0.00 0.00 4.40
3624 3680 4.033358 GGATGAAGTACAAGTCAATCGCTG 59.967 45.833 0.00 0.00 0.00 5.18
3625 3681 4.184629 GGATGAAGTACAAGTCAATCGCT 58.815 43.478 0.00 0.00 0.00 4.93
3626 3682 3.000322 CGGATGAAGTACAAGTCAATCGC 60.000 47.826 0.00 0.00 0.00 4.58
3627 3683 4.174009 ACGGATGAAGTACAAGTCAATCG 58.826 43.478 0.00 6.79 32.88 3.34
3628 3684 5.869888 AGAACGGATGAAGTACAAGTCAATC 59.130 40.000 0.00 0.00 0.00 2.67
3629 3685 5.794894 AGAACGGATGAAGTACAAGTCAAT 58.205 37.500 0.00 0.00 0.00 2.57
3630 3686 5.209818 AGAACGGATGAAGTACAAGTCAA 57.790 39.130 0.00 0.00 0.00 3.18
3631 3687 4.866508 AGAACGGATGAAGTACAAGTCA 57.133 40.909 0.00 0.00 0.00 3.41
3632 3688 7.647907 TTTTAGAACGGATGAAGTACAAGTC 57.352 36.000 0.00 0.00 0.00 3.01
3633 3689 9.367444 CTATTTTAGAACGGATGAAGTACAAGT 57.633 33.333 0.00 0.00 0.00 3.16
3634 3690 9.582431 TCTATTTTAGAACGGATGAAGTACAAG 57.418 33.333 0.00 0.00 0.00 3.16
3636 3692 9.529325 CATCTATTTTAGAACGGATGAAGTACA 57.471 33.333 0.00 0.00 38.50 2.90
3637 3693 9.745880 TCATCTATTTTAGAACGGATGAAGTAC 57.254 33.333 9.01 0.00 38.50 2.73
3638 3694 9.745880 GTCATCTATTTTAGAACGGATGAAGTA 57.254 33.333 11.59 0.00 37.60 2.24
3639 3695 7.711339 GGTCATCTATTTTAGAACGGATGAAGT 59.289 37.037 11.59 0.00 37.60 3.01
3640 3696 7.171678 GGGTCATCTATTTTAGAACGGATGAAG 59.828 40.741 11.59 0.00 37.60 3.02
3641 3697 6.990349 GGGTCATCTATTTTAGAACGGATGAA 59.010 38.462 11.59 0.01 37.60 2.57
3642 3698 6.099125 TGGGTCATCTATTTTAGAACGGATGA 59.901 38.462 0.00 0.00 38.50 2.92
3643 3699 6.288294 TGGGTCATCTATTTTAGAACGGATG 58.712 40.000 0.00 0.00 38.50 3.51
3644 3700 6.494666 TGGGTCATCTATTTTAGAACGGAT 57.505 37.500 0.00 0.00 38.50 4.18
3645 3701 5.943349 TGGGTCATCTATTTTAGAACGGA 57.057 39.130 0.00 0.00 38.50 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.