Multiple sequence alignment - TraesCS5B01G202000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G202000 chr5B 100.000 3777 0 0 1 3777 367214288 367210512 0.000000e+00 6975
1 TraesCS5B01G202000 chr5D 93.733 2601 94 18 691 3281 317453960 317451419 0.000000e+00 3836
2 TraesCS5B01G202000 chr5D 93.291 477 20 3 3312 3777 317451439 317450964 0.000000e+00 693
3 TraesCS5B01G202000 chr5D 93.696 349 21 1 44 391 129239158 129239506 4.320000e-144 521
4 TraesCS5B01G202000 chr5D 87.363 182 17 3 515 696 317454397 317454222 1.780000e-48 204
5 TraesCS5B01G202000 chr5D 83.249 197 29 4 1658 1852 557941826 557941632 1.080000e-40 178
6 TraesCS5B01G202000 chr5D 95.161 62 3 0 2391 2452 317454401 317454462 8.630000e-17 99
7 TraesCS5B01G202000 chr5A 93.155 1344 56 16 603 1937 412105233 412103917 0.000000e+00 1940
8 TraesCS5B01G202000 chr5A 93.663 1294 51 9 1989 3276 412103917 412102649 0.000000e+00 1906
9 TraesCS5B01G202000 chr5A 93.277 476 23 7 3309 3777 412102668 412102195 0.000000e+00 693
10 TraesCS5B01G202000 chr5A 96.610 59 2 0 530 588 412105601 412105543 8.630000e-17 99
11 TraesCS5B01G202000 chrUn 94.017 351 20 1 47 397 83928759 83928410 7.180000e-147 531
12 TraesCS5B01G202000 chrUn 83.854 192 27 3 1660 1849 20367270 20367459 3.000000e-41 180
13 TraesCS5B01G202000 chr6D 93.983 349 20 1 44 391 14615817 14616165 9.290000e-146 527
14 TraesCS5B01G202000 chr6D 93.503 354 22 1 44 397 464465651 464466003 3.340000e-145 525
15 TraesCS5B01G202000 chr6D 79.621 211 41 2 2289 2498 351970262 351970053 2.350000e-32 150
16 TraesCS5B01G202000 chr7D 93.258 356 22 2 44 397 11043788 11043433 1.200000e-144 523
17 TraesCS5B01G202000 chr4D 93.714 350 20 2 47 396 47729054 47728707 1.200000e-144 523
18 TraesCS5B01G202000 chr4D 85.572 201 25 4 1654 1852 390598131 390598329 1.370000e-49 207
19 TraesCS5B01G202000 chr3A 93.466 352 21 2 47 398 716637117 716636768 4.320000e-144 521
20 TraesCS5B01G202000 chr1D 92.997 357 21 4 44 397 415984657 415985012 5.590000e-143 518
21 TraesCS5B01G202000 chr1D 85.714 154 18 4 2341 2492 282137534 282137685 3.910000e-35 159
22 TraesCS5B01G202000 chr3D 93.182 352 22 2 47 398 5040228 5039879 2.010000e-142 516
23 TraesCS5B01G202000 chr6A 85.897 234 27 6 1639 1868 491027825 491028056 1.050000e-60 244
24 TraesCS5B01G202000 chr6A 80.097 206 39 2 2289 2493 491028144 491028348 6.530000e-33 152
25 TraesCS5B01G202000 chr6B 84.898 245 30 7 1639 1879 527043547 527043788 1.360000e-59 241
26 TraesCS5B01G202000 chr4B 86.567 201 23 4 1654 1852 480590889 480591087 6.350000e-53 219
27 TraesCS5B01G202000 chr4A 86.567 201 23 4 1654 1852 72294412 72294610 6.350000e-53 219


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G202000 chr5B 367210512 367214288 3776 True 6975.000000 6975 100.000000 1 3777 1 chr5B.!!$R1 3776
1 TraesCS5B01G202000 chr5D 317450964 317454397 3433 True 1577.666667 3836 91.462333 515 3777 3 chr5D.!!$R2 3262
2 TraesCS5B01G202000 chr5A 412102195 412105601 3406 True 1159.500000 1940 94.176250 530 3777 4 chr5A.!!$R1 3247

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
292 293 0.038159 GCTTCAGTGCTGGTAGTCGT 60.038 55.0 0.00 0.00 0.00 4.34 F
311 312 0.182061 TCGCTAGGTGGTCTACGGAT 59.818 55.0 0.00 0.00 0.00 4.18 F
635 931 0.319040 CCATCGCTCCATCGATCGTT 60.319 55.0 15.94 3.47 46.22 3.85 F
2452 3032 0.314618 TCAACTACAAGTACGCGCCA 59.685 50.0 5.73 0.00 0.00 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1932 2503 0.741221 CCGAAGTAGGCCAAGCAGAC 60.741 60.000 5.01 0.00 0.0 3.51 R
2283 2863 1.675714 CCACGTAGAATCTGCAGCCAA 60.676 52.381 9.47 0.00 0.0 4.52 R
2605 3185 0.252696 AGGAGTAGGACATGTGCCCA 60.253 55.000 14.38 0.00 0.0 5.36 R
3580 4170 0.249489 CAGTTTCCTCTATCGGCCGG 60.249 60.000 27.83 9.82 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.591114 ACTAGTACAGGCTAGTAAAATCTTGA 57.409 34.615 0.00 0.00 46.84 3.02
28 29 8.688151 ACTAGTACAGGCTAGTAAAATCTTGAG 58.312 37.037 0.00 0.00 46.84 3.02
29 30 7.719871 AGTACAGGCTAGTAAAATCTTGAGA 57.280 36.000 0.00 0.00 0.00 3.27
30 31 8.312669 AGTACAGGCTAGTAAAATCTTGAGAT 57.687 34.615 0.00 0.00 36.07 2.75
31 32 8.200792 AGTACAGGCTAGTAAAATCTTGAGATG 58.799 37.037 0.00 0.00 34.49 2.90
32 33 7.187824 ACAGGCTAGTAAAATCTTGAGATGA 57.812 36.000 0.00 0.00 34.49 2.92
33 34 7.044798 ACAGGCTAGTAAAATCTTGAGATGAC 58.955 38.462 0.00 0.00 34.49 3.06
34 35 7.044181 CAGGCTAGTAAAATCTTGAGATGACA 58.956 38.462 0.00 0.00 34.49 3.58
35 36 7.714377 CAGGCTAGTAAAATCTTGAGATGACAT 59.286 37.037 0.00 0.00 34.49 3.06
36 37 8.928448 AGGCTAGTAAAATCTTGAGATGACATA 58.072 33.333 0.00 0.00 34.49 2.29
37 38 9.547753 GGCTAGTAAAATCTTGAGATGACATAA 57.452 33.333 0.00 0.00 34.49 1.90
47 48 8.737168 TCTTGAGATGACATAAATTAAGGTGG 57.263 34.615 0.00 0.00 0.00 4.61
48 49 8.548025 TCTTGAGATGACATAAATTAAGGTGGA 58.452 33.333 0.00 0.00 0.00 4.02
49 50 9.347240 CTTGAGATGACATAAATTAAGGTGGAT 57.653 33.333 0.00 0.00 0.00 3.41
50 51 8.908786 TGAGATGACATAAATTAAGGTGGATC 57.091 34.615 0.00 0.00 0.00 3.36
51 52 8.717717 TGAGATGACATAAATTAAGGTGGATCT 58.282 33.333 0.00 0.00 0.00 2.75
61 62 8.525290 AAATTAAGGTGGATCTATCTTTGGTG 57.475 34.615 10.13 0.00 0.00 4.17
62 63 4.510167 AAGGTGGATCTATCTTTGGTGG 57.490 45.455 0.00 0.00 0.00 4.61
63 64 3.736094 AGGTGGATCTATCTTTGGTGGA 58.264 45.455 0.00 0.00 0.00 4.02
64 65 4.310740 AGGTGGATCTATCTTTGGTGGAT 58.689 43.478 0.00 0.00 0.00 3.41
65 66 4.728860 AGGTGGATCTATCTTTGGTGGATT 59.271 41.667 0.00 0.00 0.00 3.01
66 67 5.194537 AGGTGGATCTATCTTTGGTGGATTT 59.805 40.000 0.00 0.00 0.00 2.17
67 68 5.300286 GGTGGATCTATCTTTGGTGGATTTG 59.700 44.000 0.00 0.00 0.00 2.32
68 69 4.889409 TGGATCTATCTTTGGTGGATTTGC 59.111 41.667 0.00 0.00 0.00 3.68
69 70 5.136105 GGATCTATCTTTGGTGGATTTGCT 58.864 41.667 0.00 0.00 0.00 3.91
70 71 5.240403 GGATCTATCTTTGGTGGATTTGCTC 59.760 44.000 0.00 0.00 0.00 4.26
71 72 4.191544 TCTATCTTTGGTGGATTTGCTCG 58.808 43.478 0.00 0.00 0.00 5.03
72 73 1.533625 TCTTTGGTGGATTTGCTCGG 58.466 50.000 0.00 0.00 0.00 4.63
73 74 1.073125 TCTTTGGTGGATTTGCTCGGA 59.927 47.619 0.00 0.00 0.00 4.55
74 75 2.094675 CTTTGGTGGATTTGCTCGGAT 58.905 47.619 0.00 0.00 0.00 4.18
75 76 1.750193 TTGGTGGATTTGCTCGGATC 58.250 50.000 0.00 0.00 0.00 3.36
76 77 0.911769 TGGTGGATTTGCTCGGATCT 59.088 50.000 0.00 0.00 0.00 2.75
77 78 1.134401 TGGTGGATTTGCTCGGATCTC 60.134 52.381 0.00 0.00 0.00 2.75
78 79 1.212616 GTGGATTTGCTCGGATCTCG 58.787 55.000 0.00 0.00 40.90 4.04
79 80 0.824109 TGGATTTGCTCGGATCTCGT 59.176 50.000 0.00 0.00 40.32 4.18
80 81 1.202417 TGGATTTGCTCGGATCTCGTC 60.202 52.381 0.00 0.00 40.32 4.20
81 82 1.124462 GATTTGCTCGGATCTCGTCG 58.876 55.000 0.00 0.00 40.32 5.12
82 83 0.456221 ATTTGCTCGGATCTCGTCGT 59.544 50.000 0.00 0.00 40.32 4.34
83 84 0.242825 TTTGCTCGGATCTCGTCGTT 59.757 50.000 0.00 0.00 40.32 3.85
84 85 0.456142 TTGCTCGGATCTCGTCGTTG 60.456 55.000 0.00 0.00 40.32 4.10
85 86 1.136984 GCTCGGATCTCGTCGTTGT 59.863 57.895 0.00 0.00 40.32 3.32
86 87 0.456312 GCTCGGATCTCGTCGTTGTT 60.456 55.000 0.00 0.00 40.32 2.83
87 88 1.536149 CTCGGATCTCGTCGTTGTTC 58.464 55.000 0.00 0.00 40.32 3.18
88 89 0.179207 TCGGATCTCGTCGTTGTTCG 60.179 55.000 0.00 0.00 40.32 3.95
89 90 0.453950 CGGATCTCGTCGTTGTTCGT 60.454 55.000 0.00 0.00 40.80 3.85
90 91 1.257539 GGATCTCGTCGTTGTTCGTC 58.742 55.000 0.00 0.00 40.80 4.20
91 92 1.135746 GGATCTCGTCGTTGTTCGTCT 60.136 52.381 0.00 0.00 40.80 4.18
92 93 2.094894 GGATCTCGTCGTTGTTCGTCTA 59.905 50.000 0.00 0.00 40.80 2.59
93 94 2.584166 TCTCGTCGTTGTTCGTCTAC 57.416 50.000 0.00 0.00 40.80 2.59
94 95 1.136529 TCTCGTCGTTGTTCGTCTACG 60.137 52.381 0.00 0.00 44.05 3.51
95 96 0.722469 TCGTCGTTGTTCGTCTACGC 60.722 55.000 0.00 6.91 42.86 4.42
96 97 0.723790 CGTCGTTGTTCGTCTACGCT 60.724 55.000 0.00 0.00 42.86 5.07
97 98 1.402511 GTCGTTGTTCGTCTACGCTT 58.597 50.000 0.00 0.00 42.86 4.68
98 99 1.121967 GTCGTTGTTCGTCTACGCTTG 59.878 52.381 0.00 0.00 42.86 4.01
99 100 1.126079 CGTTGTTCGTCTACGCTTGT 58.874 50.000 0.00 0.00 38.24 3.16
100 101 1.136992 CGTTGTTCGTCTACGCTTGTG 60.137 52.381 0.00 0.00 38.24 3.33
101 102 1.856597 GTTGTTCGTCTACGCTTGTGT 59.143 47.619 0.00 0.00 39.60 3.72
102 103 1.483316 TGTTCGTCTACGCTTGTGTG 58.517 50.000 0.00 0.00 39.60 3.82
103 104 1.202325 TGTTCGTCTACGCTTGTGTGT 60.202 47.619 0.00 0.00 40.39 3.72
104 105 1.450905 GTTCGTCTACGCTTGTGTGTC 59.549 52.381 0.00 0.00 38.05 3.67
105 106 0.949397 TCGTCTACGCTTGTGTGTCT 59.051 50.000 0.00 0.00 38.05 3.41
106 107 1.335810 TCGTCTACGCTTGTGTGTCTT 59.664 47.619 0.00 0.00 38.05 3.01
107 108 1.714460 CGTCTACGCTTGTGTGTCTTC 59.286 52.381 0.00 0.00 38.05 2.87
108 109 1.714460 GTCTACGCTTGTGTGTCTTCG 59.286 52.381 0.00 0.00 38.05 3.79
109 110 1.060713 CTACGCTTGTGTGTCTTCGG 58.939 55.000 0.00 0.00 38.05 4.30
110 111 0.319211 TACGCTTGTGTGTCTTCGGG 60.319 55.000 0.00 0.00 38.05 5.14
111 112 1.594293 CGCTTGTGTGTCTTCGGGT 60.594 57.895 0.00 0.00 0.00 5.28
112 113 1.157870 CGCTTGTGTGTCTTCGGGTT 61.158 55.000 0.00 0.00 0.00 4.11
113 114 0.307760 GCTTGTGTGTCTTCGGGTTG 59.692 55.000 0.00 0.00 0.00 3.77
114 115 1.948104 CTTGTGTGTCTTCGGGTTGA 58.052 50.000 0.00 0.00 0.00 3.18
115 116 2.285083 CTTGTGTGTCTTCGGGTTGAA 58.715 47.619 0.00 0.00 34.74 2.69
116 117 2.631160 TGTGTGTCTTCGGGTTGAAT 57.369 45.000 0.00 0.00 35.63 2.57
117 118 2.489971 TGTGTGTCTTCGGGTTGAATC 58.510 47.619 0.00 0.00 35.63 2.52
118 119 1.804748 GTGTGTCTTCGGGTTGAATCC 59.195 52.381 0.00 0.00 35.63 3.01
119 120 1.697432 TGTGTCTTCGGGTTGAATCCT 59.303 47.619 0.00 0.00 35.63 3.24
120 121 2.105821 TGTGTCTTCGGGTTGAATCCTT 59.894 45.455 0.00 0.00 35.63 3.36
121 122 2.742589 GTGTCTTCGGGTTGAATCCTTC 59.257 50.000 0.00 0.00 35.63 3.46
122 123 2.290071 TGTCTTCGGGTTGAATCCTTCC 60.290 50.000 0.00 0.00 35.63 3.46
123 124 1.982226 TCTTCGGGTTGAATCCTTCCA 59.018 47.619 0.00 0.00 35.63 3.53
124 125 2.373836 TCTTCGGGTTGAATCCTTCCAA 59.626 45.455 0.00 0.00 35.63 3.53
125 126 2.194201 TCGGGTTGAATCCTTCCAAC 57.806 50.000 0.00 0.00 41.24 3.77
131 132 3.671716 GTTGAATCCTTCCAACCTACGT 58.328 45.455 0.00 0.00 37.32 3.57
132 133 4.070009 GTTGAATCCTTCCAACCTACGTT 58.930 43.478 0.00 0.00 37.32 3.99
133 134 5.240121 GTTGAATCCTTCCAACCTACGTTA 58.760 41.667 0.00 0.00 37.32 3.18
134 135 5.687166 TGAATCCTTCCAACCTACGTTAT 57.313 39.130 0.00 0.00 0.00 1.89
135 136 6.057321 TGAATCCTTCCAACCTACGTTATT 57.943 37.500 0.00 0.00 0.00 1.40
136 137 6.478129 TGAATCCTTCCAACCTACGTTATTT 58.522 36.000 0.00 0.00 0.00 1.40
137 138 6.943718 TGAATCCTTCCAACCTACGTTATTTT 59.056 34.615 0.00 0.00 0.00 1.82
138 139 7.449086 TGAATCCTTCCAACCTACGTTATTTTT 59.551 33.333 0.00 0.00 0.00 1.94
139 140 6.806388 TCCTTCCAACCTACGTTATTTTTC 57.194 37.500 0.00 0.00 0.00 2.29
140 141 6.297582 TCCTTCCAACCTACGTTATTTTTCA 58.702 36.000 0.00 0.00 0.00 2.69
141 142 6.943718 TCCTTCCAACCTACGTTATTTTTCAT 59.056 34.615 0.00 0.00 0.00 2.57
142 143 7.120138 TCCTTCCAACCTACGTTATTTTTCATC 59.880 37.037 0.00 0.00 0.00 2.92
143 144 6.411630 TCCAACCTACGTTATTTTTCATCG 57.588 37.500 0.00 0.00 0.00 3.84
144 145 5.352016 TCCAACCTACGTTATTTTTCATCGG 59.648 40.000 0.00 0.00 0.00 4.18
145 146 4.870221 ACCTACGTTATTTTTCATCGGC 57.130 40.909 0.00 0.00 0.00 5.54
146 147 3.307782 ACCTACGTTATTTTTCATCGGCG 59.692 43.478 0.00 0.00 0.00 6.46
147 148 3.552699 CCTACGTTATTTTTCATCGGCGA 59.447 43.478 13.87 13.87 0.00 5.54
148 149 3.378959 ACGTTATTTTTCATCGGCGAC 57.621 42.857 13.76 0.00 0.00 5.19
160 161 2.572284 GGCGACGGTAGCTGTTCT 59.428 61.111 12.89 0.00 34.52 3.01
161 162 1.805945 GGCGACGGTAGCTGTTCTG 60.806 63.158 12.89 0.00 34.52 3.02
162 163 1.805945 GCGACGGTAGCTGTTCTGG 60.806 63.158 5.95 0.00 0.00 3.86
163 164 1.585006 CGACGGTAGCTGTTCTGGT 59.415 57.895 0.00 0.00 0.00 4.00
164 165 0.732880 CGACGGTAGCTGTTCTGGTG 60.733 60.000 0.00 0.00 0.00 4.17
165 166 1.004918 ACGGTAGCTGTTCTGGTGC 60.005 57.895 0.00 0.00 0.00 5.01
166 167 2.094659 CGGTAGCTGTTCTGGTGCG 61.095 63.158 0.00 0.00 0.00 5.34
167 168 2.391389 GGTAGCTGTTCTGGTGCGC 61.391 63.158 0.00 0.00 0.00 6.09
168 169 1.374758 GTAGCTGTTCTGGTGCGCT 60.375 57.895 9.73 0.00 34.88 5.92
169 170 1.374631 TAGCTGTTCTGGTGCGCTG 60.375 57.895 9.73 0.00 32.49 5.18
170 171 2.786539 TAGCTGTTCTGGTGCGCTGG 62.787 60.000 9.73 0.00 32.49 4.85
171 172 2.281070 CTGTTCTGGTGCGCTGGT 60.281 61.111 9.73 0.00 0.00 4.00
172 173 2.280797 TGTTCTGGTGCGCTGGTC 60.281 61.111 9.73 0.00 0.00 4.02
173 174 3.050275 GTTCTGGTGCGCTGGTCC 61.050 66.667 9.73 6.75 0.00 4.46
174 175 3.241530 TTCTGGTGCGCTGGTCCT 61.242 61.111 9.73 0.00 0.00 3.85
175 176 1.911269 TTCTGGTGCGCTGGTCCTA 60.911 57.895 9.73 0.00 0.00 2.94
176 177 1.264749 TTCTGGTGCGCTGGTCCTAT 61.265 55.000 9.73 0.00 0.00 2.57
177 178 1.522355 CTGGTGCGCTGGTCCTATG 60.522 63.158 9.73 0.00 0.00 2.23
178 179 2.203070 GGTGCGCTGGTCCTATGG 60.203 66.667 9.73 0.00 0.00 2.74
179 180 2.203070 GTGCGCTGGTCCTATGGG 60.203 66.667 9.73 0.00 0.00 4.00
180 181 3.479203 TGCGCTGGTCCTATGGGG 61.479 66.667 9.73 0.00 0.00 4.96
181 182 4.937431 GCGCTGGTCCTATGGGGC 62.937 72.222 0.00 0.00 36.26 5.80
189 190 2.343484 GTCCTATGGGGCCTTAACAC 57.657 55.000 0.84 0.00 34.39 3.32
190 191 0.834612 TCCTATGGGGCCTTAACACG 59.165 55.000 0.84 0.00 34.39 4.49
191 192 0.834612 CCTATGGGGCCTTAACACGA 59.165 55.000 0.84 0.00 0.00 4.35
192 193 1.474498 CCTATGGGGCCTTAACACGAC 60.474 57.143 0.84 0.00 0.00 4.34
193 194 0.176219 TATGGGGCCTTAACACGACG 59.824 55.000 0.84 0.00 0.00 5.12
194 195 1.546589 ATGGGGCCTTAACACGACGA 61.547 55.000 0.84 0.00 0.00 4.20
195 196 1.739196 GGGGCCTTAACACGACGAC 60.739 63.158 0.84 0.00 0.00 4.34
196 197 1.291272 GGGCCTTAACACGACGACT 59.709 57.895 0.84 0.00 0.00 4.18
197 198 0.320160 GGGCCTTAACACGACGACTT 60.320 55.000 0.84 0.00 0.00 3.01
198 199 1.066136 GGCCTTAACACGACGACTTC 58.934 55.000 0.00 0.00 0.00 3.01
199 200 1.066136 GCCTTAACACGACGACTTCC 58.934 55.000 0.00 0.00 0.00 3.46
200 201 1.706443 CCTTAACACGACGACTTCCC 58.294 55.000 0.00 0.00 0.00 3.97
201 202 1.334054 CTTAACACGACGACTTCCCG 58.666 55.000 0.00 0.00 0.00 5.14
202 203 0.950836 TTAACACGACGACTTCCCGA 59.049 50.000 0.00 0.00 0.00 5.14
203 204 0.238289 TAACACGACGACTTCCCGAC 59.762 55.000 0.00 0.00 0.00 4.79
204 205 1.450531 AACACGACGACTTCCCGACT 61.451 55.000 0.00 0.00 0.00 4.18
205 206 1.442184 CACGACGACTTCCCGACTG 60.442 63.158 0.00 0.00 0.00 3.51
206 207 1.895707 ACGACGACTTCCCGACTGT 60.896 57.895 0.00 0.00 0.00 3.55
207 208 1.154263 CGACGACTTCCCGACTGTC 60.154 63.158 0.00 0.00 0.00 3.51
208 209 1.575576 CGACGACTTCCCGACTGTCT 61.576 60.000 6.21 0.00 0.00 3.41
209 210 1.446907 GACGACTTCCCGACTGTCTA 58.553 55.000 6.21 0.00 0.00 2.59
210 211 1.397692 GACGACTTCCCGACTGTCTAG 59.602 57.143 6.21 0.00 0.00 2.43
211 212 1.271271 ACGACTTCCCGACTGTCTAGT 60.271 52.381 6.21 4.17 40.66 2.57
212 213 2.027745 ACGACTTCCCGACTGTCTAGTA 60.028 50.000 6.21 0.00 37.25 1.82
213 214 2.351111 CGACTTCCCGACTGTCTAGTAC 59.649 54.545 6.21 0.00 37.25 2.73
214 215 3.341823 GACTTCCCGACTGTCTAGTACA 58.658 50.000 6.21 0.00 37.25 2.90
215 216 3.755378 GACTTCCCGACTGTCTAGTACAA 59.245 47.826 6.21 0.00 37.74 2.41
216 217 4.342359 ACTTCCCGACTGTCTAGTACAAT 58.658 43.478 6.21 0.00 37.74 2.71
217 218 5.503927 ACTTCCCGACTGTCTAGTACAATA 58.496 41.667 6.21 0.00 37.74 1.90
218 219 5.948162 ACTTCCCGACTGTCTAGTACAATAA 59.052 40.000 6.21 0.00 37.74 1.40
219 220 6.095160 ACTTCCCGACTGTCTAGTACAATAAG 59.905 42.308 6.21 0.00 37.74 1.73
220 221 5.503927 TCCCGACTGTCTAGTACAATAAGT 58.496 41.667 6.21 0.00 37.74 2.24
221 222 5.948162 TCCCGACTGTCTAGTACAATAAGTT 59.052 40.000 6.21 0.00 37.74 2.66
222 223 6.034591 CCCGACTGTCTAGTACAATAAGTTG 58.965 44.000 6.21 0.00 37.74 3.16
231 232 2.561478 ACAATAAGTTGTGCCCGACT 57.439 45.000 0.00 0.00 46.43 4.18
232 233 2.423577 ACAATAAGTTGTGCCCGACTC 58.576 47.619 0.00 0.00 46.43 3.36
233 234 1.737793 CAATAAGTTGTGCCCGACTCC 59.262 52.381 0.00 0.00 34.00 3.85
234 235 0.981183 ATAAGTTGTGCCCGACTCCA 59.019 50.000 0.00 0.00 34.00 3.86
235 236 0.320374 TAAGTTGTGCCCGACTCCAG 59.680 55.000 0.00 0.00 34.00 3.86
236 237 3.050275 GTTGTGCCCGACTCCAGC 61.050 66.667 0.00 0.00 0.00 4.85
237 238 4.680237 TTGTGCCCGACTCCAGCG 62.680 66.667 0.00 0.00 0.00 5.18
239 240 4.148825 GTGCCCGACTCCAGCGAT 62.149 66.667 0.00 0.00 0.00 4.58
240 241 4.147449 TGCCCGACTCCAGCGATG 62.147 66.667 0.00 0.00 0.00 3.84
241 242 4.899239 GCCCGACTCCAGCGATGG 62.899 72.222 15.12 15.12 0.00 3.51
242 243 3.147595 CCCGACTCCAGCGATGGA 61.148 66.667 23.11 23.11 36.40 3.41
249 250 2.914908 TCCAGCGATGGAGGAATGA 58.085 52.632 20.59 0.00 33.38 2.57
250 251 1.427809 TCCAGCGATGGAGGAATGAT 58.572 50.000 20.59 0.00 33.38 2.45
251 252 1.071228 TCCAGCGATGGAGGAATGATG 59.929 52.381 20.59 0.00 33.38 3.07
252 253 1.071228 CCAGCGATGGAGGAATGATGA 59.929 52.381 16.48 0.00 0.00 2.92
253 254 2.141517 CAGCGATGGAGGAATGATGAC 58.858 52.381 0.00 0.00 0.00 3.06
254 255 1.143305 GCGATGGAGGAATGATGACG 58.857 55.000 0.00 0.00 0.00 4.35
255 256 1.788258 CGATGGAGGAATGATGACGG 58.212 55.000 0.00 0.00 0.00 4.79
256 257 1.517242 GATGGAGGAATGATGACGGC 58.483 55.000 0.00 0.00 0.00 5.68
257 258 0.250038 ATGGAGGAATGATGACGGCG 60.250 55.000 4.80 4.80 0.00 6.46
258 259 1.595382 GGAGGAATGATGACGGCGG 60.595 63.158 13.24 0.00 0.00 6.13
259 260 2.203070 AGGAATGATGACGGCGGC 60.203 61.111 13.24 9.67 0.00 6.53
260 261 3.640000 GGAATGATGACGGCGGCG 61.640 66.667 31.06 31.06 0.00 6.46
261 262 4.299316 GAATGATGACGGCGGCGC 62.299 66.667 32.57 26.17 0.00 6.53
278 279 3.780693 CGATTTCGGCTCGCTTCA 58.219 55.556 0.00 0.00 35.37 3.02
279 280 1.633171 CGATTTCGGCTCGCTTCAG 59.367 57.895 0.00 0.00 35.37 3.02
280 281 1.078759 CGATTTCGGCTCGCTTCAGT 61.079 55.000 0.00 0.00 35.37 3.41
281 282 0.371645 GATTTCGGCTCGCTTCAGTG 59.628 55.000 0.00 0.00 0.00 3.66
282 283 1.639298 ATTTCGGCTCGCTTCAGTGC 61.639 55.000 0.00 0.00 0.00 4.40
283 284 2.715532 TTTCGGCTCGCTTCAGTGCT 62.716 55.000 0.00 0.00 0.00 4.40
284 285 3.485431 CGGCTCGCTTCAGTGCTG 61.485 66.667 0.00 0.00 0.00 4.41
285 286 3.123620 GGCTCGCTTCAGTGCTGG 61.124 66.667 0.00 0.00 0.00 4.85
286 287 2.358003 GCTCGCTTCAGTGCTGGT 60.358 61.111 0.00 0.00 0.00 4.00
287 288 1.079819 GCTCGCTTCAGTGCTGGTA 60.080 57.895 0.00 0.00 0.00 3.25
288 289 1.080995 GCTCGCTTCAGTGCTGGTAG 61.081 60.000 0.00 0.00 0.00 3.18
289 290 0.244994 CTCGCTTCAGTGCTGGTAGT 59.755 55.000 0.00 0.00 0.00 2.73
290 291 0.243907 TCGCTTCAGTGCTGGTAGTC 59.756 55.000 0.00 0.00 0.00 2.59
291 292 1.073216 CGCTTCAGTGCTGGTAGTCG 61.073 60.000 0.00 3.25 0.00 4.18
292 293 0.038159 GCTTCAGTGCTGGTAGTCGT 60.038 55.000 0.00 0.00 0.00 4.34
293 294 1.983972 CTTCAGTGCTGGTAGTCGTC 58.016 55.000 0.00 0.00 0.00 4.20
294 295 0.240145 TTCAGTGCTGGTAGTCGTCG 59.760 55.000 0.00 0.00 0.00 5.12
295 296 1.801913 CAGTGCTGGTAGTCGTCGC 60.802 63.158 0.00 0.00 0.00 5.19
296 297 1.972223 AGTGCTGGTAGTCGTCGCT 60.972 57.895 0.00 0.00 0.00 4.93
297 298 0.675837 AGTGCTGGTAGTCGTCGCTA 60.676 55.000 0.00 0.00 0.00 4.26
298 299 0.248134 GTGCTGGTAGTCGTCGCTAG 60.248 60.000 0.00 0.00 0.00 3.42
299 300 1.355916 GCTGGTAGTCGTCGCTAGG 59.644 63.158 0.00 0.00 0.00 3.02
300 301 1.375098 GCTGGTAGTCGTCGCTAGGT 61.375 60.000 0.00 0.00 0.00 3.08
301 302 0.377554 CTGGTAGTCGTCGCTAGGTG 59.622 60.000 0.00 0.00 0.00 4.00
302 303 1.028330 TGGTAGTCGTCGCTAGGTGG 61.028 60.000 0.00 0.00 0.00 4.61
303 304 1.028868 GGTAGTCGTCGCTAGGTGGT 61.029 60.000 0.00 0.00 0.00 4.16
304 305 0.376502 GTAGTCGTCGCTAGGTGGTC 59.623 60.000 0.00 0.00 0.00 4.02
305 306 0.251354 TAGTCGTCGCTAGGTGGTCT 59.749 55.000 0.00 0.00 0.00 3.85
306 307 0.251354 AGTCGTCGCTAGGTGGTCTA 59.749 55.000 0.00 0.00 0.00 2.59
307 308 0.376502 GTCGTCGCTAGGTGGTCTAC 59.623 60.000 0.00 0.00 0.00 2.59
308 309 1.086067 TCGTCGCTAGGTGGTCTACG 61.086 60.000 0.00 0.00 0.00 3.51
309 310 1.726265 GTCGCTAGGTGGTCTACGG 59.274 63.158 0.00 0.00 0.00 4.02
310 311 0.745845 GTCGCTAGGTGGTCTACGGA 60.746 60.000 0.00 0.00 0.00 4.69
311 312 0.182061 TCGCTAGGTGGTCTACGGAT 59.818 55.000 0.00 0.00 0.00 4.18
312 313 0.592148 CGCTAGGTGGTCTACGGATC 59.408 60.000 0.00 0.00 0.00 3.36
313 314 1.814634 CGCTAGGTGGTCTACGGATCT 60.815 57.143 0.00 0.00 0.00 2.75
314 315 1.609555 GCTAGGTGGTCTACGGATCTG 59.390 57.143 0.00 0.00 0.00 2.90
315 316 2.231529 CTAGGTGGTCTACGGATCTGG 58.768 57.143 6.47 0.00 0.00 3.86
316 317 0.629596 AGGTGGTCTACGGATCTGGA 59.370 55.000 6.47 0.00 0.00 3.86
317 318 1.218196 AGGTGGTCTACGGATCTGGAT 59.782 52.381 6.47 0.00 0.00 3.41
318 319 1.341531 GGTGGTCTACGGATCTGGATG 59.658 57.143 6.47 0.00 0.00 3.51
319 320 2.032620 GTGGTCTACGGATCTGGATGT 58.967 52.381 6.47 0.00 0.00 3.06
320 321 3.220110 GTGGTCTACGGATCTGGATGTA 58.780 50.000 6.47 0.00 0.00 2.29
321 322 3.635373 GTGGTCTACGGATCTGGATGTAA 59.365 47.826 6.47 0.00 0.00 2.41
322 323 4.098960 GTGGTCTACGGATCTGGATGTAAA 59.901 45.833 6.47 0.00 0.00 2.01
323 324 4.899457 TGGTCTACGGATCTGGATGTAAAT 59.101 41.667 6.47 0.00 0.00 1.40
324 325 5.365605 TGGTCTACGGATCTGGATGTAAATT 59.634 40.000 6.47 0.00 0.00 1.82
325 326 6.126883 TGGTCTACGGATCTGGATGTAAATTT 60.127 38.462 6.47 0.00 0.00 1.82
326 327 6.766467 GGTCTACGGATCTGGATGTAAATTTT 59.234 38.462 6.47 0.00 0.00 1.82
327 328 7.929785 GGTCTACGGATCTGGATGTAAATTTTA 59.070 37.037 6.47 0.00 0.00 1.52
328 329 9.490379 GTCTACGGATCTGGATGTAAATTTTAT 57.510 33.333 6.47 0.00 0.00 1.40
332 333 9.408648 ACGGATCTGGATGTAAATTTTATTTCT 57.591 29.630 6.47 0.00 0.00 2.52
333 334 9.669353 CGGATCTGGATGTAAATTTTATTTCTG 57.331 33.333 0.00 0.00 0.00 3.02
334 335 9.971922 GGATCTGGATGTAAATTTTATTTCTGG 57.028 33.333 0.00 0.00 0.00 3.86
349 350 5.796350 ATTTCTGGTATTCGTTGTACTGC 57.204 39.130 0.00 0.00 0.00 4.40
350 351 3.241067 TCTGGTATTCGTTGTACTGCC 57.759 47.619 0.00 0.00 0.00 4.85
351 352 2.563620 TCTGGTATTCGTTGTACTGCCA 59.436 45.455 0.00 0.00 0.00 4.92
352 353 3.196901 TCTGGTATTCGTTGTACTGCCAT 59.803 43.478 0.00 0.00 0.00 4.40
353 354 3.266636 TGGTATTCGTTGTACTGCCATG 58.733 45.455 0.00 0.00 0.00 3.66
354 355 3.055747 TGGTATTCGTTGTACTGCCATGA 60.056 43.478 0.00 0.00 0.00 3.07
355 356 4.127171 GGTATTCGTTGTACTGCCATGAT 58.873 43.478 0.00 0.00 0.00 2.45
356 357 4.574828 GGTATTCGTTGTACTGCCATGATT 59.425 41.667 0.00 0.00 0.00 2.57
357 358 4.621068 ATTCGTTGTACTGCCATGATTG 57.379 40.909 0.00 0.00 0.00 2.67
358 359 3.326836 TCGTTGTACTGCCATGATTGA 57.673 42.857 0.00 0.00 0.00 2.57
359 360 3.669536 TCGTTGTACTGCCATGATTGAA 58.330 40.909 0.00 0.00 0.00 2.69
360 361 3.684305 TCGTTGTACTGCCATGATTGAAG 59.316 43.478 0.00 0.00 0.00 3.02
361 362 3.684305 CGTTGTACTGCCATGATTGAAGA 59.316 43.478 0.00 0.00 0.00 2.87
362 363 4.333649 CGTTGTACTGCCATGATTGAAGAT 59.666 41.667 0.00 0.00 0.00 2.40
363 364 5.575957 GTTGTACTGCCATGATTGAAGATG 58.424 41.667 0.00 0.00 0.00 2.90
364 365 5.101648 TGTACTGCCATGATTGAAGATGA 57.898 39.130 0.00 0.00 0.00 2.92
365 366 5.499313 TGTACTGCCATGATTGAAGATGAA 58.501 37.500 0.00 0.00 0.00 2.57
366 367 6.124340 TGTACTGCCATGATTGAAGATGAAT 58.876 36.000 0.00 0.00 0.00 2.57
367 368 7.281841 TGTACTGCCATGATTGAAGATGAATA 58.718 34.615 0.00 0.00 0.00 1.75
368 369 6.879276 ACTGCCATGATTGAAGATGAATAG 57.121 37.500 0.00 0.00 0.00 1.73
369 370 6.598503 ACTGCCATGATTGAAGATGAATAGA 58.401 36.000 0.00 0.00 0.00 1.98
370 371 7.232188 ACTGCCATGATTGAAGATGAATAGAT 58.768 34.615 0.00 0.00 0.00 1.98
371 372 7.724506 ACTGCCATGATTGAAGATGAATAGATT 59.275 33.333 0.00 0.00 0.00 2.40
372 373 9.227777 CTGCCATGATTGAAGATGAATAGATTA 57.772 33.333 0.00 0.00 0.00 1.75
373 374 9.227777 TGCCATGATTGAAGATGAATAGATTAG 57.772 33.333 0.00 0.00 0.00 1.73
374 375 9.445878 GCCATGATTGAAGATGAATAGATTAGA 57.554 33.333 0.00 0.00 0.00 2.10
410 411 6.869315 AAAAGAAAAAGGTGAGAGCTACTC 57.131 37.500 6.31 6.31 45.11 2.59
435 436 6.836577 AAAAAGGAAAAATCGCGATTTTGA 57.163 29.167 43.48 12.88 46.76 2.69
436 437 6.836577 AAAAGGAAAAATCGCGATTTTGAA 57.163 29.167 43.48 12.12 46.76 2.69
437 438 6.836577 AAAGGAAAAATCGCGATTTTGAAA 57.163 29.167 43.48 11.35 46.76 2.69
438 439 6.836577 AAGGAAAAATCGCGATTTTGAAAA 57.163 29.167 43.48 10.60 46.76 2.29
439 440 7.420184 AAGGAAAAATCGCGATTTTGAAAAT 57.580 28.000 43.48 32.91 46.76 1.82
440 441 6.820459 AGGAAAAATCGCGATTTTGAAAATG 58.180 32.000 43.48 0.22 46.76 2.32
441 442 6.014898 GGAAAAATCGCGATTTTGAAAATGG 58.985 36.000 43.48 8.06 46.76 3.16
442 443 6.347321 GGAAAAATCGCGATTTTGAAAATGGT 60.347 34.615 43.48 31.18 46.76 3.55
443 444 5.514059 AAATCGCGATTTTGAAAATGGTG 57.486 34.783 34.99 16.69 37.74 4.17
444 445 3.906014 TCGCGATTTTGAAAATGGTGA 57.094 38.095 20.01 20.01 0.00 4.02
445 446 4.230314 TCGCGATTTTGAAAATGGTGAA 57.770 36.364 21.11 9.25 0.00 3.18
446 447 3.978217 TCGCGATTTTGAAAATGGTGAAC 59.022 39.130 21.11 3.17 0.00 3.18
447 448 3.733224 CGCGATTTTGAAAATGGTGAACA 59.267 39.130 17.56 0.00 0.00 3.18
448 449 4.385447 CGCGATTTTGAAAATGGTGAACAT 59.615 37.500 17.56 0.00 43.07 2.71
449 450 5.570973 CGCGATTTTGAAAATGGTGAACATA 59.429 36.000 17.56 0.00 39.40 2.29
450 451 6.253298 CGCGATTTTGAAAATGGTGAACATAT 59.747 34.615 17.56 0.00 39.40 1.78
451 452 7.430793 CGCGATTTTGAAAATGGTGAACATATA 59.569 33.333 17.56 0.00 39.40 0.86
452 453 9.248291 GCGATTTTGAAAATGGTGAACATATAT 57.752 29.630 8.03 0.00 39.40 0.86
455 456 9.887629 ATTTTGAAAATGGTGAACATATATGCA 57.112 25.926 12.79 2.73 39.40 3.96
456 457 8.700722 TTTGAAAATGGTGAACATATATGCAC 57.299 30.769 12.79 12.65 39.40 4.57
457 458 7.643569 TGAAAATGGTGAACATATATGCACT 57.356 32.000 12.79 0.00 39.40 4.40
458 459 8.065473 TGAAAATGGTGAACATATATGCACTT 57.935 30.769 12.79 0.00 39.40 3.16
459 460 8.530311 TGAAAATGGTGAACATATATGCACTTT 58.470 29.630 12.79 9.73 39.40 2.66
460 461 9.369904 GAAAATGGTGAACATATATGCACTTTT 57.630 29.630 12.79 14.54 39.40 2.27
461 462 9.723601 AAAATGGTGAACATATATGCACTTTTT 57.276 25.926 12.79 16.63 39.40 1.94
485 486 7.852971 TTTTCGGGTAACAATATAGGAACTG 57.147 36.000 0.00 0.00 37.68 3.16
486 487 6.549433 TTCGGGTAACAATATAGGAACTGT 57.451 37.500 0.00 0.00 37.68 3.55
487 488 6.549433 TCGGGTAACAATATAGGAACTGTT 57.451 37.500 0.00 0.00 37.68 3.16
488 489 6.576185 TCGGGTAACAATATAGGAACTGTTC 58.424 40.000 12.05 12.05 37.68 3.18
489 490 5.461078 CGGGTAACAATATAGGAACTGTTCG 59.539 44.000 13.89 1.68 37.68 3.95
490 491 5.235831 GGGTAACAATATAGGAACTGTTCGC 59.764 44.000 13.89 7.52 37.68 4.70
491 492 6.047231 GGTAACAATATAGGAACTGTTCGCT 58.953 40.000 13.89 13.66 41.52 4.93
492 493 7.205297 GGTAACAATATAGGAACTGTTCGCTA 58.795 38.462 13.89 15.13 41.52 4.26
493 494 7.871463 GGTAACAATATAGGAACTGTTCGCTAT 59.129 37.037 23.01 23.01 41.52 2.97
494 495 9.257651 GTAACAATATAGGAACTGTTCGCTATT 57.742 33.333 23.88 17.97 41.52 1.73
496 497 9.998106 AACAATATAGGAACTGTTCGCTATTAT 57.002 29.630 23.88 15.90 41.52 1.28
497 498 9.998106 ACAATATAGGAACTGTTCGCTATTATT 57.002 29.630 23.88 19.22 41.52 1.40
507 508 9.632807 AACTGTTCGCTATTATTAAAAATTGCA 57.367 25.926 4.43 0.00 37.42 4.08
508 509 9.801873 ACTGTTCGCTATTATTAAAAATTGCAT 57.198 25.926 0.00 0.00 37.42 3.96
510 511 9.794685 TGTTCGCTATTATTAAAAATTGCATGA 57.205 25.926 0.00 0.00 37.42 3.07
588 589 3.701532 ATTTTGAAACCAGACGCGAAA 57.298 38.095 15.93 0.00 0.00 3.46
589 590 3.489180 TTTTGAAACCAGACGCGAAAA 57.511 38.095 15.93 2.36 0.00 2.29
590 591 2.748461 TTGAAACCAGACGCGAAAAG 57.252 45.000 15.93 0.47 0.00 2.27
592 593 1.595794 TGAAACCAGACGCGAAAAGTC 59.404 47.619 15.93 0.00 38.81 3.01
594 595 1.949465 AACCAGACGCGAAAAGTCTT 58.051 45.000 15.93 0.00 45.74 3.01
597 598 2.681344 ACCAGACGCGAAAAGTCTTTTT 59.319 40.909 15.93 0.00 45.74 1.94
635 931 0.319040 CCATCGCTCCATCGATCGTT 60.319 55.000 15.94 3.47 46.22 3.85
658 954 4.407945 TCTCCAAAATGCCCTAGGTAGTAC 59.592 45.833 8.29 0.00 0.00 2.73
676 972 5.038651 AGTACTACTCCTACTACCAGCAG 57.961 47.826 0.00 0.00 0.00 4.24
756 1318 2.260869 GGTGACTTGGTGTGCGCAT 61.261 57.895 15.91 0.00 0.00 4.73
854 1416 1.867233 CAAAACTGTAGCAGCTCACGT 59.133 47.619 0.00 0.00 34.37 4.49
980 1551 1.806568 CCGAGCTCAGAGTGGAGAC 59.193 63.158 15.40 0.00 37.05 3.36
1337 1908 2.416432 CGAACGGGTCCCTCCTCTC 61.416 68.421 6.29 0.00 36.25 3.20
1339 1910 2.800159 GAACGGGTCCCTCCTCTCCA 62.800 65.000 6.29 0.00 36.25 3.86
1340 1911 2.443016 CGGGTCCCTCCTCTCCAG 60.443 72.222 6.29 0.00 36.25 3.86
1341 1912 2.781406 GGGTCCCTCCTCTCCAGT 59.219 66.667 0.00 0.00 36.25 4.00
1342 1913 1.687493 GGGTCCCTCCTCTCCAGTG 60.687 68.421 0.00 0.00 36.25 3.66
1343 1914 1.079438 GGTCCCTCCTCTCCAGTGT 59.921 63.158 0.00 0.00 0.00 3.55
1344 1915 0.973496 GGTCCCTCCTCTCCAGTGTC 60.973 65.000 0.00 0.00 0.00 3.67
1345 1916 0.973496 GTCCCTCCTCTCCAGTGTCC 60.973 65.000 0.00 0.00 0.00 4.02
1346 1917 1.079256 CCCTCCTCTCCAGTGTCCA 59.921 63.158 0.00 0.00 0.00 4.02
1369 1940 0.716591 TCCTAAGGCAGAAGGAGGGA 59.283 55.000 0.00 0.00 36.97 4.20
1586 2157 0.694771 TCTCCCTGCTGTGCATCTTT 59.305 50.000 0.00 0.00 38.13 2.52
1604 2175 6.427547 GCATCTTTCCACCAAATCAATTCAAA 59.572 34.615 0.00 0.00 0.00 2.69
1616 2187 9.549509 CCAAATCAATTCAAAAACATGCTAATG 57.450 29.630 0.00 0.00 39.89 1.90
1621 2192 7.331440 TCAATTCAAAAACATGCTAATGCGAAT 59.669 29.630 0.00 0.00 43.34 3.34
1879 2450 2.343484 CATCATGTGAGGCACCATCT 57.657 50.000 0.00 0.00 32.73 2.90
1932 2503 2.167281 TCCTCTGCTTCTCTCATTTCCG 59.833 50.000 0.00 0.00 0.00 4.30
1980 2551 2.423538 GTGGAAGAAGCGCACCATAATT 59.576 45.455 11.47 0.00 34.87 1.40
1987 2558 7.918562 GGAAGAAGCGCACCATAATTAATTTAA 59.081 33.333 11.47 0.00 0.00 1.52
2053 2627 2.681778 CTCGTGGGGAGAGCCAGT 60.682 66.667 0.00 0.00 46.23 4.00
2219 2797 7.803189 ACAACGTTTCTGCACATAAAGAAATAG 59.197 33.333 0.00 2.77 42.62 1.73
2264 2844 4.635765 TGTGGTCTCTCTTTTTGTGAACTG 59.364 41.667 0.00 0.00 0.00 3.16
2265 2845 3.627577 TGGTCTCTCTTTTTGTGAACTGC 59.372 43.478 0.00 0.00 0.00 4.40
2282 2862 0.737804 TGCGCACTGACATTTGTGTT 59.262 45.000 5.66 0.00 36.63 3.32
2283 2863 1.133982 TGCGCACTGACATTTGTGTTT 59.866 42.857 5.66 0.00 36.63 2.83
2334 2914 0.326048 ATCAGGGAGGTGGTGAGGAG 60.326 60.000 0.00 0.00 0.00 3.69
2452 3032 0.314618 TCAACTACAAGTACGCGCCA 59.685 50.000 5.73 0.00 0.00 5.69
2513 3093 1.740296 GTCAACCCCATCGACCACG 60.740 63.158 0.00 0.00 41.26 4.94
2593 3173 2.182791 CAGCAGGCGTCGATGTCT 59.817 61.111 5.77 5.77 0.00 3.41
2608 3188 2.032528 TCTGCTTTCAGGCGTGGG 59.967 61.111 6.56 0.00 40.69 4.61
2841 3421 4.530857 CCGGCACCGAGGATGACC 62.531 72.222 11.42 0.00 42.83 4.02
2877 3457 4.619140 GCGAGGCGGCGTACGTAT 62.619 66.667 17.90 0.00 46.52 3.06
2984 3564 2.557805 GGTACACGACTCACGCGA 59.442 61.111 15.93 0.00 46.94 5.87
3070 3650 2.202932 CTCCTTGGACCATCCGCG 60.203 66.667 0.00 0.00 40.17 6.46
3071 3651 4.467084 TCCTTGGACCATCCGCGC 62.467 66.667 0.00 0.00 40.17 6.86
3130 3710 5.445540 CGTTAAAATTCCGACTTGCTCCTAC 60.446 44.000 0.00 0.00 0.00 3.18
3134 3714 0.331954 TCCGACTTGCTCCTACTCCT 59.668 55.000 0.00 0.00 0.00 3.69
3228 3808 0.819582 TCACGGGGGATAAAGACGAC 59.180 55.000 0.00 0.00 0.00 4.34
3229 3809 0.526954 CACGGGGGATAAAGACGACG 60.527 60.000 0.00 0.00 0.00 5.12
3230 3810 0.680921 ACGGGGGATAAAGACGACGA 60.681 55.000 0.00 0.00 0.00 4.20
3231 3811 0.457035 CGGGGGATAAAGACGACGAA 59.543 55.000 0.00 0.00 0.00 3.85
3274 3854 1.667830 CATCGGTGGAACGCACTGT 60.668 57.895 0.00 0.00 43.02 3.55
3275 3855 1.070786 ATCGGTGGAACGCACTGTT 59.929 52.632 0.00 0.00 45.61 3.16
3276 3856 0.534203 ATCGGTGGAACGCACTGTTT 60.534 50.000 0.00 0.00 42.09 2.83
3277 3857 1.010125 CGGTGGAACGCACTGTTTG 60.010 57.895 0.00 0.00 42.09 2.93
3278 3858 1.358759 GGTGGAACGCACTGTTTGG 59.641 57.895 0.00 0.00 42.09 3.28
3279 3859 1.358759 GTGGAACGCACTGTTTGGG 59.641 57.895 0.00 0.00 42.09 4.12
3280 3860 2.335011 GGAACGCACTGTTTGGGC 59.665 61.111 0.00 0.00 42.09 5.36
3285 3865 4.972591 GCACTGTTTGGGCACATC 57.027 55.556 0.00 0.00 46.29 3.06
3286 3866 1.081242 GCACTGTTTGGGCACATCG 60.081 57.895 0.00 0.00 46.29 3.84
3287 3867 1.580942 CACTGTTTGGGCACATCGG 59.419 57.895 0.00 0.00 0.00 4.18
3288 3868 1.150536 ACTGTTTGGGCACATCGGT 59.849 52.632 0.00 0.00 0.00 4.69
3290 3870 1.865788 CTGTTTGGGCACATCGGTGG 61.866 60.000 0.00 0.00 45.38 4.61
3291 3871 1.602323 GTTTGGGCACATCGGTGGA 60.602 57.895 0.00 0.00 45.38 4.02
3292 3872 1.151679 TTTGGGCACATCGGTGGAA 59.848 52.632 0.00 0.00 45.38 3.53
3293 3873 1.175983 TTTGGGCACATCGGTGGAAC 61.176 55.000 0.00 0.00 45.38 3.62
3294 3874 3.124921 GGGCACATCGGTGGAACG 61.125 66.667 0.00 0.00 45.38 3.95
3295 3875 3.799755 GGCACATCGGTGGAACGC 61.800 66.667 0.00 0.00 45.38 4.84
3296 3876 3.047280 GCACATCGGTGGAACGCA 61.047 61.111 0.00 0.00 45.38 5.24
3297 3877 2.860293 CACATCGGTGGAACGCAC 59.140 61.111 0.00 0.00 43.02 5.34
3298 3878 1.667830 CACATCGGTGGAACGCACT 60.668 57.895 0.00 0.00 43.02 4.40
3299 3879 1.667830 ACATCGGTGGAACGCACTG 60.668 57.895 0.00 0.00 43.02 3.66
3300 3880 1.667830 CATCGGTGGAACGCACTGT 60.668 57.895 0.00 0.00 43.02 3.55
3301 3881 1.070786 ATCGGTGGAACGCACTGTT 59.929 52.632 0.00 0.00 45.61 3.16
3302 3882 0.534203 ATCGGTGGAACGCACTGTTT 60.534 50.000 0.00 0.00 42.09 2.83
3303 3883 1.010125 CGGTGGAACGCACTGTTTG 60.010 57.895 0.00 0.00 42.09 2.93
3304 3884 1.358759 GGTGGAACGCACTGTTTGG 59.641 57.895 0.00 0.00 42.09 3.28
3305 3885 1.358759 GTGGAACGCACTGTTTGGG 59.641 57.895 0.00 0.00 42.09 4.12
3306 3886 2.335011 GGAACGCACTGTTTGGGC 59.665 61.111 0.00 0.00 42.09 5.36
3311 3891 4.972591 GCACTGTTTGGGCACATC 57.027 55.556 0.00 0.00 46.29 3.06
3312 3892 1.081242 GCACTGTTTGGGCACATCG 60.081 57.895 0.00 0.00 46.29 3.84
3313 3893 1.580942 CACTGTTTGGGCACATCGG 59.419 57.895 0.00 0.00 0.00 4.18
3314 3894 1.150536 ACTGTTTGGGCACATCGGT 59.849 52.632 0.00 0.00 0.00 4.69
3316 3896 1.865788 CTGTTTGGGCACATCGGTGG 61.866 60.000 0.00 0.00 45.38 4.61
3317 3897 1.602323 GTTTGGGCACATCGGTGGA 60.602 57.895 0.00 0.00 45.38 4.02
3318 3898 1.151679 TTTGGGCACATCGGTGGAA 59.848 52.632 0.00 0.00 45.38 3.53
3319 3899 1.175983 TTTGGGCACATCGGTGGAAC 61.176 55.000 0.00 0.00 45.38 3.62
3320 3900 3.124921 GGGCACATCGGTGGAACG 61.125 66.667 0.00 0.00 45.38 3.95
3321 3901 3.799755 GGCACATCGGTGGAACGC 61.800 66.667 0.00 0.00 45.38 4.84
3322 3902 3.047280 GCACATCGGTGGAACGCA 61.047 61.111 0.00 0.00 45.38 5.24
3323 3903 2.860293 CACATCGGTGGAACGCAC 59.140 61.111 0.00 0.00 43.02 5.34
3324 3904 1.667830 CACATCGGTGGAACGCACT 60.668 57.895 0.00 0.00 43.02 4.40
3325 3905 1.667830 ACATCGGTGGAACGCACTG 60.668 57.895 0.00 0.00 43.02 3.66
3326 3906 1.667830 CATCGGTGGAACGCACTGT 60.668 57.895 0.00 0.00 43.02 3.55
3528 4118 2.049063 GTGCGTGCCTCTCGTTCT 60.049 61.111 0.00 0.00 0.00 3.01
3535 4125 0.319900 TGCCTCTCGTTCTTGTCAGC 60.320 55.000 0.00 0.00 0.00 4.26
3575 4165 1.543106 GAAAGTTCGGTCGTTCGCGT 61.543 55.000 5.77 0.00 42.11 6.01
3649 4239 1.835927 GCTCCTGCCTGGACAGAACT 61.836 60.000 16.44 0.00 40.56 3.01
3681 4273 7.078851 TGTAAACGATTGCACGAACATAATTT 58.921 30.769 3.48 0.00 37.03 1.82
3692 4284 4.795970 GAACATAATTTGATCGACGGCT 57.204 40.909 0.00 0.00 0.00 5.52
3753 4348 5.957842 AAACTTGTGTGTGAGAAGAAACA 57.042 34.783 0.00 0.00 0.00 2.83
3763 4358 1.815003 GAGAAGAAACATGCTGGTGGG 59.185 52.381 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.904834 TCTCAAGATTTTACTAGCCTGTACTAG 58.095 37.037 0.00 0.00 44.38 2.57
6 7 8.198109 TCATCTCAAGATTTTACTAGCCTGTAC 58.802 37.037 0.00 0.00 31.21 2.90
7 8 8.198109 GTCATCTCAAGATTTTACTAGCCTGTA 58.802 37.037 0.00 0.00 31.21 2.74
8 9 7.044798 GTCATCTCAAGATTTTACTAGCCTGT 58.955 38.462 0.00 0.00 31.21 4.00
9 10 7.044181 TGTCATCTCAAGATTTTACTAGCCTG 58.956 38.462 0.00 0.00 31.21 4.85
10 11 7.187824 TGTCATCTCAAGATTTTACTAGCCT 57.812 36.000 0.00 0.00 31.21 4.58
11 12 9.547753 TTATGTCATCTCAAGATTTTACTAGCC 57.452 33.333 0.00 0.00 31.21 3.93
21 22 9.347240 CCACCTTAATTTATGTCATCTCAAGAT 57.653 33.333 0.00 0.00 34.56 2.40
22 23 8.548025 TCCACCTTAATTTATGTCATCTCAAGA 58.452 33.333 0.00 0.00 0.00 3.02
23 24 8.737168 TCCACCTTAATTTATGTCATCTCAAG 57.263 34.615 0.00 0.00 0.00 3.02
24 25 9.342308 GATCCACCTTAATTTATGTCATCTCAA 57.658 33.333 0.00 0.00 0.00 3.02
25 26 8.717717 AGATCCACCTTAATTTATGTCATCTCA 58.282 33.333 0.00 0.00 0.00 3.27
35 36 9.627123 CACCAAAGATAGATCCACCTTAATTTA 57.373 33.333 0.00 0.00 0.00 1.40
36 37 7.561356 CCACCAAAGATAGATCCACCTTAATTT 59.439 37.037 0.00 0.00 0.00 1.82
37 38 7.062957 CCACCAAAGATAGATCCACCTTAATT 58.937 38.462 0.00 0.00 0.00 1.40
38 39 6.389869 TCCACCAAAGATAGATCCACCTTAAT 59.610 38.462 0.00 0.00 0.00 1.40
39 40 5.729229 TCCACCAAAGATAGATCCACCTTAA 59.271 40.000 0.00 0.00 0.00 1.85
40 41 5.285401 TCCACCAAAGATAGATCCACCTTA 58.715 41.667 0.00 0.00 0.00 2.69
41 42 4.111577 TCCACCAAAGATAGATCCACCTT 58.888 43.478 0.00 0.00 0.00 3.50
42 43 3.736094 TCCACCAAAGATAGATCCACCT 58.264 45.455 0.00 0.00 0.00 4.00
43 44 4.713792 ATCCACCAAAGATAGATCCACC 57.286 45.455 0.00 0.00 0.00 4.61
44 45 5.221126 GCAAATCCACCAAAGATAGATCCAC 60.221 44.000 0.00 0.00 0.00 4.02
45 46 4.889409 GCAAATCCACCAAAGATAGATCCA 59.111 41.667 0.00 0.00 0.00 3.41
46 47 5.136105 AGCAAATCCACCAAAGATAGATCC 58.864 41.667 0.00 0.00 0.00 3.36
47 48 5.049818 CGAGCAAATCCACCAAAGATAGATC 60.050 44.000 0.00 0.00 0.00 2.75
48 49 4.818546 CGAGCAAATCCACCAAAGATAGAT 59.181 41.667 0.00 0.00 0.00 1.98
49 50 4.191544 CGAGCAAATCCACCAAAGATAGA 58.808 43.478 0.00 0.00 0.00 1.98
50 51 3.313526 CCGAGCAAATCCACCAAAGATAG 59.686 47.826 0.00 0.00 0.00 2.08
51 52 3.054728 TCCGAGCAAATCCACCAAAGATA 60.055 43.478 0.00 0.00 0.00 1.98
52 53 2.094675 CCGAGCAAATCCACCAAAGAT 58.905 47.619 0.00 0.00 0.00 2.40
53 54 1.073125 TCCGAGCAAATCCACCAAAGA 59.927 47.619 0.00 0.00 0.00 2.52
54 55 1.533625 TCCGAGCAAATCCACCAAAG 58.466 50.000 0.00 0.00 0.00 2.77
55 56 2.091541 GATCCGAGCAAATCCACCAAA 58.908 47.619 0.00 0.00 0.00 3.28
56 57 1.281867 AGATCCGAGCAAATCCACCAA 59.718 47.619 0.00 0.00 0.00 3.67
57 58 0.911769 AGATCCGAGCAAATCCACCA 59.088 50.000 0.00 0.00 0.00 4.17
58 59 1.587547 GAGATCCGAGCAAATCCACC 58.412 55.000 0.00 0.00 0.00 4.61
59 60 1.212616 CGAGATCCGAGCAAATCCAC 58.787 55.000 0.00 0.00 41.76 4.02
60 61 0.824109 ACGAGATCCGAGCAAATCCA 59.176 50.000 10.05 0.00 41.76 3.41
61 62 1.492720 GACGAGATCCGAGCAAATCC 58.507 55.000 10.05 0.00 41.76 3.01
62 63 1.124462 CGACGAGATCCGAGCAAATC 58.876 55.000 10.05 0.00 41.76 2.17
63 64 0.456221 ACGACGAGATCCGAGCAAAT 59.544 50.000 0.00 0.00 41.76 2.32
64 65 0.242825 AACGACGAGATCCGAGCAAA 59.757 50.000 0.00 0.00 41.76 3.68
65 66 0.456142 CAACGACGAGATCCGAGCAA 60.456 55.000 0.00 0.00 41.76 3.91
66 67 1.136774 CAACGACGAGATCCGAGCA 59.863 57.895 0.00 0.00 41.76 4.26
67 68 0.456312 AACAACGACGAGATCCGAGC 60.456 55.000 0.00 2.24 41.76 5.03
68 69 1.536149 GAACAACGACGAGATCCGAG 58.464 55.000 0.00 6.49 41.76 4.63
69 70 0.179207 CGAACAACGACGAGATCCGA 60.179 55.000 0.00 0.00 45.77 4.55
70 71 0.453950 ACGAACAACGACGAGATCCG 60.454 55.000 0.00 2.02 45.77 4.18
71 72 1.135746 AGACGAACAACGACGAGATCC 60.136 52.381 0.00 0.00 45.77 3.36
72 73 2.244281 AGACGAACAACGACGAGATC 57.756 50.000 0.00 0.00 45.77 2.75
73 74 2.473540 CGTAGACGAACAACGACGAGAT 60.474 50.000 0.00 0.00 45.77 2.75
74 75 1.136529 CGTAGACGAACAACGACGAGA 60.137 52.381 0.00 0.00 45.77 4.04
75 76 1.236556 CGTAGACGAACAACGACGAG 58.763 55.000 0.00 0.00 45.77 4.18
76 77 0.722469 GCGTAGACGAACAACGACGA 60.722 55.000 6.19 0.00 45.77 4.20
77 78 0.723790 AGCGTAGACGAACAACGACG 60.724 55.000 6.19 0.00 45.77 5.12
78 79 1.121967 CAAGCGTAGACGAACAACGAC 59.878 52.381 6.19 0.00 45.77 4.34
79 80 1.268692 ACAAGCGTAGACGAACAACGA 60.269 47.619 6.19 0.00 45.77 3.85
81 82 1.856597 ACACAAGCGTAGACGAACAAC 59.143 47.619 6.19 0.00 43.02 3.32
82 83 1.855978 CACACAAGCGTAGACGAACAA 59.144 47.619 6.19 0.00 43.02 2.83
83 84 1.202325 ACACACAAGCGTAGACGAACA 60.202 47.619 6.19 0.00 43.02 3.18
84 85 1.450905 GACACACAAGCGTAGACGAAC 59.549 52.381 6.19 0.00 43.02 3.95
85 86 1.335810 AGACACACAAGCGTAGACGAA 59.664 47.619 6.19 0.00 43.02 3.85
86 87 0.949397 AGACACACAAGCGTAGACGA 59.051 50.000 6.19 0.00 43.02 4.20
87 88 1.714460 GAAGACACACAAGCGTAGACG 59.286 52.381 0.00 0.00 43.27 4.18
88 89 1.714460 CGAAGACACACAAGCGTAGAC 59.286 52.381 0.00 0.00 0.00 2.59
89 90 1.335597 CCGAAGACACACAAGCGTAGA 60.336 52.381 0.00 0.00 0.00 2.59
90 91 1.060713 CCGAAGACACACAAGCGTAG 58.939 55.000 0.00 0.00 0.00 3.51
91 92 0.319211 CCCGAAGACACACAAGCGTA 60.319 55.000 0.00 0.00 0.00 4.42
92 93 1.594293 CCCGAAGACACACAAGCGT 60.594 57.895 0.00 0.00 0.00 5.07
93 94 1.157870 AACCCGAAGACACACAAGCG 61.158 55.000 0.00 0.00 0.00 4.68
94 95 0.307760 CAACCCGAAGACACACAAGC 59.692 55.000 0.00 0.00 0.00 4.01
95 96 1.948104 TCAACCCGAAGACACACAAG 58.052 50.000 0.00 0.00 0.00 3.16
96 97 2.404923 TTCAACCCGAAGACACACAA 57.595 45.000 0.00 0.00 0.00 3.33
97 98 2.489971 GATTCAACCCGAAGACACACA 58.510 47.619 0.00 0.00 36.95 3.72
98 99 1.804748 GGATTCAACCCGAAGACACAC 59.195 52.381 0.00 0.00 36.95 3.82
99 100 1.697432 AGGATTCAACCCGAAGACACA 59.303 47.619 0.00 0.00 36.95 3.72
100 101 2.474410 AGGATTCAACCCGAAGACAC 57.526 50.000 0.00 0.00 36.95 3.67
101 102 3.053831 GAAGGATTCAACCCGAAGACA 57.946 47.619 0.00 0.00 46.62 3.41
109 110 5.800882 TAACGTAGGTTGGAAGGATTCAACC 60.801 44.000 15.10 15.10 46.83 3.77
110 111 5.240121 TAACGTAGGTTGGAAGGATTCAAC 58.760 41.667 10.99 0.00 41.43 3.18
111 112 5.486735 TAACGTAGGTTGGAAGGATTCAA 57.513 39.130 10.99 0.00 41.43 2.69
112 113 5.687166 ATAACGTAGGTTGGAAGGATTCA 57.313 39.130 10.99 0.00 41.43 2.57
113 114 6.997239 AAATAACGTAGGTTGGAAGGATTC 57.003 37.500 10.99 0.00 40.01 2.52
114 115 7.449086 TGAAAAATAACGTAGGTTGGAAGGATT 59.551 33.333 10.99 0.00 36.90 3.01
115 116 6.943718 TGAAAAATAACGTAGGTTGGAAGGAT 59.056 34.615 10.99 0.00 36.90 3.24
116 117 6.297582 TGAAAAATAACGTAGGTTGGAAGGA 58.702 36.000 10.99 0.00 36.90 3.36
117 118 6.563222 TGAAAAATAACGTAGGTTGGAAGG 57.437 37.500 10.99 0.00 36.90 3.46
118 119 6.959311 CGATGAAAAATAACGTAGGTTGGAAG 59.041 38.462 10.99 0.00 36.90 3.46
119 120 6.128227 CCGATGAAAAATAACGTAGGTTGGAA 60.128 38.462 10.99 0.00 36.90 3.53
120 121 5.352016 CCGATGAAAAATAACGTAGGTTGGA 59.648 40.000 10.99 0.00 36.90 3.53
121 122 5.565695 CCGATGAAAAATAACGTAGGTTGG 58.434 41.667 10.99 0.00 36.90 3.77
122 123 5.025826 GCCGATGAAAAATAACGTAGGTTG 58.974 41.667 10.99 0.00 36.90 3.77
123 124 4.201744 CGCCGATGAAAAATAACGTAGGTT 60.202 41.667 6.03 6.03 40.20 3.50
124 125 3.307782 CGCCGATGAAAAATAACGTAGGT 59.692 43.478 0.00 0.00 0.00 3.08
125 126 3.552699 TCGCCGATGAAAAATAACGTAGG 59.447 43.478 0.00 0.00 0.00 3.18
126 127 4.502558 GTCGCCGATGAAAAATAACGTAG 58.497 43.478 0.00 0.00 0.00 3.51
127 128 3.000872 CGTCGCCGATGAAAAATAACGTA 60.001 43.478 0.00 0.00 35.63 3.57
128 129 2.222640 CGTCGCCGATGAAAAATAACGT 60.223 45.455 0.00 0.00 35.63 3.99
129 130 2.350616 CGTCGCCGATGAAAAATAACG 58.649 47.619 0.00 0.00 35.63 3.18
130 131 2.094734 ACCGTCGCCGATGAAAAATAAC 59.905 45.455 8.12 0.00 35.63 1.89
131 132 2.348660 ACCGTCGCCGATGAAAAATAA 58.651 42.857 8.12 0.00 35.63 1.40
132 133 2.012937 ACCGTCGCCGATGAAAAATA 57.987 45.000 8.12 0.00 35.63 1.40
133 134 1.931172 CTACCGTCGCCGATGAAAAAT 59.069 47.619 8.12 0.00 35.63 1.82
134 135 1.352114 CTACCGTCGCCGATGAAAAA 58.648 50.000 8.12 0.00 35.63 1.94
135 136 1.079875 GCTACCGTCGCCGATGAAAA 61.080 55.000 8.12 0.00 35.63 2.29
136 137 1.517694 GCTACCGTCGCCGATGAAA 60.518 57.895 8.12 0.00 35.63 2.69
137 138 2.103538 GCTACCGTCGCCGATGAA 59.896 61.111 8.12 0.00 35.63 2.57
138 139 2.827190 AGCTACCGTCGCCGATGA 60.827 61.111 8.12 0.00 35.63 2.92
139 140 2.655364 CAGCTACCGTCGCCGATG 60.655 66.667 0.00 0.00 35.63 3.84
140 141 2.609183 GAACAGCTACCGTCGCCGAT 62.609 60.000 0.00 0.00 35.63 4.18
141 142 3.332493 GAACAGCTACCGTCGCCGA 62.332 63.158 0.00 0.00 35.63 5.54
142 143 2.879462 GAACAGCTACCGTCGCCG 60.879 66.667 0.00 0.00 0.00 6.46
143 144 1.805945 CAGAACAGCTACCGTCGCC 60.806 63.158 0.00 0.00 0.00 5.54
144 145 1.805945 CCAGAACAGCTACCGTCGC 60.806 63.158 0.00 0.00 0.00 5.19
145 146 0.732880 CACCAGAACAGCTACCGTCG 60.733 60.000 0.00 0.00 0.00 5.12
146 147 1.014564 GCACCAGAACAGCTACCGTC 61.015 60.000 0.00 0.00 0.00 4.79
147 148 1.004918 GCACCAGAACAGCTACCGT 60.005 57.895 0.00 0.00 0.00 4.83
148 149 2.094659 CGCACCAGAACAGCTACCG 61.095 63.158 0.00 0.00 0.00 4.02
149 150 2.391389 GCGCACCAGAACAGCTACC 61.391 63.158 0.30 0.00 0.00 3.18
150 151 1.374758 AGCGCACCAGAACAGCTAC 60.375 57.895 11.47 0.00 36.28 3.58
151 152 1.374631 CAGCGCACCAGAACAGCTA 60.375 57.895 11.47 0.00 36.28 3.32
152 153 2.667536 CAGCGCACCAGAACAGCT 60.668 61.111 11.47 0.00 38.90 4.24
153 154 3.730761 CCAGCGCACCAGAACAGC 61.731 66.667 11.47 0.00 0.00 4.40
154 155 2.281070 ACCAGCGCACCAGAACAG 60.281 61.111 11.47 0.00 0.00 3.16
155 156 2.280797 GACCAGCGCACCAGAACA 60.281 61.111 11.47 0.00 0.00 3.18
156 157 2.167398 TAGGACCAGCGCACCAGAAC 62.167 60.000 11.47 0.00 0.00 3.01
157 158 1.264749 ATAGGACCAGCGCACCAGAA 61.265 55.000 11.47 0.00 0.00 3.02
158 159 1.685765 ATAGGACCAGCGCACCAGA 60.686 57.895 11.47 0.33 0.00 3.86
159 160 1.522355 CATAGGACCAGCGCACCAG 60.522 63.158 11.47 0.00 0.00 4.00
160 161 2.584064 CATAGGACCAGCGCACCA 59.416 61.111 11.47 0.00 0.00 4.17
161 162 2.203070 CCATAGGACCAGCGCACC 60.203 66.667 11.47 7.54 0.00 5.01
162 163 2.203070 CCCATAGGACCAGCGCAC 60.203 66.667 11.47 0.00 33.47 5.34
163 164 3.479203 CCCCATAGGACCAGCGCA 61.479 66.667 11.47 0.00 38.24 6.09
164 165 4.937431 GCCCCATAGGACCAGCGC 62.937 72.222 0.00 0.00 38.24 5.92
165 166 4.256180 GGCCCCATAGGACCAGCG 62.256 72.222 0.00 0.00 37.96 5.18
171 172 0.834612 CGTGTTAAGGCCCCATAGGA 59.165 55.000 0.00 0.00 38.24 2.94
172 173 0.834612 TCGTGTTAAGGCCCCATAGG 59.165 55.000 0.00 0.00 39.47 2.57
173 174 1.805120 CGTCGTGTTAAGGCCCCATAG 60.805 57.143 0.00 0.00 0.00 2.23
174 175 0.176219 CGTCGTGTTAAGGCCCCATA 59.824 55.000 0.00 0.00 0.00 2.74
175 176 1.078708 CGTCGTGTTAAGGCCCCAT 60.079 57.895 0.00 0.00 0.00 4.00
176 177 2.208619 TCGTCGTGTTAAGGCCCCA 61.209 57.895 0.00 0.00 0.00 4.96
177 178 1.739196 GTCGTCGTGTTAAGGCCCC 60.739 63.158 0.00 0.00 0.00 5.80
178 179 0.320160 AAGTCGTCGTGTTAAGGCCC 60.320 55.000 0.00 0.00 0.00 5.80
179 180 1.066136 GAAGTCGTCGTGTTAAGGCC 58.934 55.000 0.00 0.00 0.00 5.19
180 181 1.066136 GGAAGTCGTCGTGTTAAGGC 58.934 55.000 0.00 0.00 0.00 4.35
181 182 1.706443 GGGAAGTCGTCGTGTTAAGG 58.294 55.000 0.00 0.00 0.00 2.69
182 183 1.069022 TCGGGAAGTCGTCGTGTTAAG 60.069 52.381 0.00 0.00 0.00 1.85
183 184 0.950836 TCGGGAAGTCGTCGTGTTAA 59.049 50.000 0.00 0.00 0.00 2.01
184 185 0.238289 GTCGGGAAGTCGTCGTGTTA 59.762 55.000 0.00 0.00 0.00 2.41
185 186 1.008079 GTCGGGAAGTCGTCGTGTT 60.008 57.895 0.00 0.00 0.00 3.32
186 187 1.895707 AGTCGGGAAGTCGTCGTGT 60.896 57.895 0.00 0.00 0.00 4.49
187 188 1.442184 CAGTCGGGAAGTCGTCGTG 60.442 63.158 0.00 0.00 0.00 4.35
188 189 1.849976 GACAGTCGGGAAGTCGTCGT 61.850 60.000 0.00 0.00 0.00 4.34
189 190 1.154263 GACAGTCGGGAAGTCGTCG 60.154 63.158 0.00 0.00 0.00 5.12
190 191 1.397692 CTAGACAGTCGGGAAGTCGTC 59.602 57.143 0.00 0.00 37.36 4.20
191 192 1.271271 ACTAGACAGTCGGGAAGTCGT 60.271 52.381 0.00 0.00 37.36 4.34
192 193 1.451067 ACTAGACAGTCGGGAAGTCG 58.549 55.000 0.00 0.00 37.36 4.18
193 194 3.341823 TGTACTAGACAGTCGGGAAGTC 58.658 50.000 0.00 0.00 36.14 3.01
194 195 3.430042 TGTACTAGACAGTCGGGAAGT 57.570 47.619 0.00 1.07 36.14 3.01
195 196 4.985538 ATTGTACTAGACAGTCGGGAAG 57.014 45.455 0.00 0.00 39.88 3.46
196 197 5.948162 ACTTATTGTACTAGACAGTCGGGAA 59.052 40.000 0.00 0.00 39.88 3.97
197 198 5.503927 ACTTATTGTACTAGACAGTCGGGA 58.496 41.667 0.00 0.00 39.88 5.14
198 199 5.831702 ACTTATTGTACTAGACAGTCGGG 57.168 43.478 0.00 0.00 39.88 5.14
213 214 1.737793 GGAGTCGGGCACAACTTATTG 59.262 52.381 0.00 0.00 41.98 1.90
214 215 1.349688 TGGAGTCGGGCACAACTTATT 59.650 47.619 0.00 0.00 0.00 1.40
215 216 0.981183 TGGAGTCGGGCACAACTTAT 59.019 50.000 0.00 0.00 0.00 1.73
216 217 0.320374 CTGGAGTCGGGCACAACTTA 59.680 55.000 0.00 0.00 0.00 2.24
217 218 1.071471 CTGGAGTCGGGCACAACTT 59.929 57.895 0.00 0.00 0.00 2.66
218 219 2.743718 CTGGAGTCGGGCACAACT 59.256 61.111 0.00 0.00 0.00 3.16
219 220 3.050275 GCTGGAGTCGGGCACAAC 61.050 66.667 0.00 0.00 0.00 3.32
220 221 4.680237 CGCTGGAGTCGGGCACAA 62.680 66.667 6.73 0.00 0.00 3.33
222 223 4.148825 ATCGCTGGAGTCGGGCAC 62.149 66.667 6.73 0.00 0.00 5.01
223 224 4.147449 CATCGCTGGAGTCGGGCA 62.147 66.667 6.73 0.00 0.00 5.36
224 225 4.899239 CCATCGCTGGAGTCGGGC 62.899 72.222 0.00 0.00 46.37 6.13
225 226 3.147595 TCCATCGCTGGAGTCGGG 61.148 66.667 3.28 0.00 46.95 5.14
232 233 1.071228 TCATCATTCCTCCATCGCTGG 59.929 52.381 0.00 0.00 44.64 4.85
233 234 2.141517 GTCATCATTCCTCCATCGCTG 58.858 52.381 0.00 0.00 0.00 5.18
234 235 1.269988 CGTCATCATTCCTCCATCGCT 60.270 52.381 0.00 0.00 0.00 4.93
235 236 1.143305 CGTCATCATTCCTCCATCGC 58.857 55.000 0.00 0.00 0.00 4.58
236 237 1.788258 CCGTCATCATTCCTCCATCG 58.212 55.000 0.00 0.00 0.00 3.84
237 238 1.517242 GCCGTCATCATTCCTCCATC 58.483 55.000 0.00 0.00 0.00 3.51
238 239 0.250038 CGCCGTCATCATTCCTCCAT 60.250 55.000 0.00 0.00 0.00 3.41
239 240 1.143838 CGCCGTCATCATTCCTCCA 59.856 57.895 0.00 0.00 0.00 3.86
240 241 1.595382 CCGCCGTCATCATTCCTCC 60.595 63.158 0.00 0.00 0.00 4.30
241 242 2.247437 GCCGCCGTCATCATTCCTC 61.247 63.158 0.00 0.00 0.00 3.71
242 243 2.203070 GCCGCCGTCATCATTCCT 60.203 61.111 0.00 0.00 0.00 3.36
243 244 3.640000 CGCCGCCGTCATCATTCC 61.640 66.667 0.00 0.00 0.00 3.01
244 245 4.299316 GCGCCGCCGTCATCATTC 62.299 66.667 0.00 0.00 36.67 2.67
261 262 1.078759 ACTGAAGCGAGCCGAAATCG 61.079 55.000 0.00 0.00 43.00 3.34
262 263 0.371645 CACTGAAGCGAGCCGAAATC 59.628 55.000 0.00 0.00 0.00 2.17
263 264 1.639298 GCACTGAAGCGAGCCGAAAT 61.639 55.000 0.00 0.00 0.00 2.17
264 265 2.317609 GCACTGAAGCGAGCCGAAA 61.318 57.895 0.00 0.00 0.00 3.46
265 266 2.738521 GCACTGAAGCGAGCCGAA 60.739 61.111 0.00 0.00 0.00 4.30
266 267 3.684990 AGCACTGAAGCGAGCCGA 61.685 61.111 0.00 0.00 40.15 5.54
267 268 3.485431 CAGCACTGAAGCGAGCCG 61.485 66.667 0.00 0.00 40.15 5.52
268 269 2.507110 TACCAGCACTGAAGCGAGCC 62.507 60.000 0.00 0.00 40.15 4.70
269 270 1.079819 TACCAGCACTGAAGCGAGC 60.080 57.895 0.00 0.00 40.15 5.03
270 271 0.244994 ACTACCAGCACTGAAGCGAG 59.755 55.000 0.00 0.00 40.15 5.03
271 272 0.243907 GACTACCAGCACTGAAGCGA 59.756 55.000 0.00 0.00 40.15 4.93
272 273 1.073216 CGACTACCAGCACTGAAGCG 61.073 60.000 0.00 1.97 40.15 4.68
273 274 0.038159 ACGACTACCAGCACTGAAGC 60.038 55.000 0.00 0.00 0.00 3.86
274 275 1.729472 CGACGACTACCAGCACTGAAG 60.729 57.143 0.00 0.00 0.00 3.02
275 276 0.240145 CGACGACTACCAGCACTGAA 59.760 55.000 0.00 0.00 0.00 3.02
276 277 1.873863 CGACGACTACCAGCACTGA 59.126 57.895 0.00 0.00 0.00 3.41
277 278 1.801913 GCGACGACTACCAGCACTG 60.802 63.158 0.00 0.00 0.00 3.66
278 279 0.675837 TAGCGACGACTACCAGCACT 60.676 55.000 0.00 0.00 0.00 4.40
279 280 0.248134 CTAGCGACGACTACCAGCAC 60.248 60.000 0.00 0.00 0.00 4.40
280 281 1.374343 CCTAGCGACGACTACCAGCA 61.374 60.000 0.00 0.00 0.00 4.41
281 282 1.355916 CCTAGCGACGACTACCAGC 59.644 63.158 0.00 0.00 0.00 4.85
282 283 0.377554 CACCTAGCGACGACTACCAG 59.622 60.000 0.00 0.00 0.00 4.00
283 284 1.028330 CCACCTAGCGACGACTACCA 61.028 60.000 0.00 0.00 0.00 3.25
284 285 1.028868 ACCACCTAGCGACGACTACC 61.029 60.000 0.00 0.00 0.00 3.18
285 286 0.376502 GACCACCTAGCGACGACTAC 59.623 60.000 0.00 0.00 0.00 2.73
286 287 0.251354 AGACCACCTAGCGACGACTA 59.749 55.000 0.00 0.00 0.00 2.59
287 288 0.251354 TAGACCACCTAGCGACGACT 59.749 55.000 0.00 0.00 0.00 4.18
288 289 0.376502 GTAGACCACCTAGCGACGAC 59.623 60.000 0.00 0.00 0.00 4.34
289 290 1.086067 CGTAGACCACCTAGCGACGA 61.086 60.000 0.00 0.00 0.00 4.20
290 291 1.351012 CGTAGACCACCTAGCGACG 59.649 63.158 0.00 0.00 0.00 5.12
291 292 0.745845 TCCGTAGACCACCTAGCGAC 60.746 60.000 0.00 0.00 0.00 5.19
292 293 0.182061 ATCCGTAGACCACCTAGCGA 59.818 55.000 0.00 0.00 0.00 4.93
293 294 0.592148 GATCCGTAGACCACCTAGCG 59.408 60.000 0.00 0.00 0.00 4.26
294 295 1.609555 CAGATCCGTAGACCACCTAGC 59.390 57.143 0.00 0.00 0.00 3.42
295 296 2.158652 TCCAGATCCGTAGACCACCTAG 60.159 54.545 0.00 0.00 0.00 3.02
296 297 1.848388 TCCAGATCCGTAGACCACCTA 59.152 52.381 0.00 0.00 0.00 3.08
297 298 0.629596 TCCAGATCCGTAGACCACCT 59.370 55.000 0.00 0.00 0.00 4.00
298 299 1.341531 CATCCAGATCCGTAGACCACC 59.658 57.143 0.00 0.00 0.00 4.61
299 300 2.032620 ACATCCAGATCCGTAGACCAC 58.967 52.381 0.00 0.00 0.00 4.16
300 301 2.454336 ACATCCAGATCCGTAGACCA 57.546 50.000 0.00 0.00 0.00 4.02
301 302 4.931661 TTTACATCCAGATCCGTAGACC 57.068 45.455 0.00 0.00 0.00 3.85
302 303 7.787725 AAAATTTACATCCAGATCCGTAGAC 57.212 36.000 0.00 0.00 0.00 2.59
306 307 9.408648 AGAAATAAAATTTACATCCAGATCCGT 57.591 29.630 0.00 0.00 0.00 4.69
307 308 9.669353 CAGAAATAAAATTTACATCCAGATCCG 57.331 33.333 0.00 0.00 0.00 4.18
308 309 9.971922 CCAGAAATAAAATTTACATCCAGATCC 57.028 33.333 0.00 0.00 0.00 3.36
323 324 8.231837 GCAGTACAACGAATACCAGAAATAAAA 58.768 33.333 0.00 0.00 0.00 1.52
324 325 7.148373 GGCAGTACAACGAATACCAGAAATAAA 60.148 37.037 0.00 0.00 0.00 1.40
325 326 6.314400 GGCAGTACAACGAATACCAGAAATAA 59.686 38.462 0.00 0.00 0.00 1.40
326 327 5.813672 GGCAGTACAACGAATACCAGAAATA 59.186 40.000 0.00 0.00 0.00 1.40
327 328 4.634443 GGCAGTACAACGAATACCAGAAAT 59.366 41.667 0.00 0.00 0.00 2.17
328 329 3.998341 GGCAGTACAACGAATACCAGAAA 59.002 43.478 0.00 0.00 0.00 2.52
329 330 3.007074 TGGCAGTACAACGAATACCAGAA 59.993 43.478 0.00 0.00 0.00 3.02
330 331 2.563620 TGGCAGTACAACGAATACCAGA 59.436 45.455 0.00 0.00 0.00 3.86
331 332 2.967362 TGGCAGTACAACGAATACCAG 58.033 47.619 0.00 0.00 0.00 4.00
332 333 3.055747 TCATGGCAGTACAACGAATACCA 60.056 43.478 0.00 0.00 0.00 3.25
333 334 3.527533 TCATGGCAGTACAACGAATACC 58.472 45.455 0.00 0.00 0.00 2.73
334 335 5.293324 TCAATCATGGCAGTACAACGAATAC 59.707 40.000 0.00 0.00 0.00 1.89
335 336 5.423886 TCAATCATGGCAGTACAACGAATA 58.576 37.500 0.00 0.00 0.00 1.75
336 337 4.260985 TCAATCATGGCAGTACAACGAAT 58.739 39.130 0.00 0.00 0.00 3.34
337 338 3.669536 TCAATCATGGCAGTACAACGAA 58.330 40.909 0.00 0.00 0.00 3.85
338 339 3.326836 TCAATCATGGCAGTACAACGA 57.673 42.857 0.00 0.00 0.00 3.85
339 340 3.684305 TCTTCAATCATGGCAGTACAACG 59.316 43.478 0.00 0.00 0.00 4.10
340 341 5.355071 TCATCTTCAATCATGGCAGTACAAC 59.645 40.000 0.00 0.00 0.00 3.32
341 342 5.499313 TCATCTTCAATCATGGCAGTACAA 58.501 37.500 0.00 0.00 0.00 2.41
342 343 5.101648 TCATCTTCAATCATGGCAGTACA 57.898 39.130 0.00 0.00 0.00 2.90
343 344 6.630444 ATTCATCTTCAATCATGGCAGTAC 57.370 37.500 0.00 0.00 0.00 2.73
344 345 7.738847 TCTATTCATCTTCAATCATGGCAGTA 58.261 34.615 0.00 0.00 0.00 2.74
345 346 6.598503 TCTATTCATCTTCAATCATGGCAGT 58.401 36.000 0.00 0.00 0.00 4.40
346 347 7.689446 ATCTATTCATCTTCAATCATGGCAG 57.311 36.000 0.00 0.00 0.00 4.85
347 348 9.227777 CTAATCTATTCATCTTCAATCATGGCA 57.772 33.333 0.00 0.00 0.00 4.92
348 349 9.445878 TCTAATCTATTCATCTTCAATCATGGC 57.554 33.333 0.00 0.00 0.00 4.40
386 387 6.828785 TGAGTAGCTCTCACCTTTTTCTTTTT 59.171 34.615 10.62 0.00 46.77 1.94
387 388 6.357367 TGAGTAGCTCTCACCTTTTTCTTTT 58.643 36.000 10.62 0.00 46.77 2.27
388 389 5.930135 TGAGTAGCTCTCACCTTTTTCTTT 58.070 37.500 10.62 0.00 46.77 2.52
389 390 5.552870 TGAGTAGCTCTCACCTTTTTCTT 57.447 39.130 10.62 0.00 46.77 2.52
412 413 6.836577 TCAAAATCGCGATTTTTCCTTTTT 57.163 29.167 42.03 25.75 45.67 1.94
413 414 6.836577 TTCAAAATCGCGATTTTTCCTTTT 57.163 29.167 42.03 26.37 45.67 2.27
414 415 6.836577 TTTCAAAATCGCGATTTTTCCTTT 57.163 29.167 42.03 26.47 45.67 3.11
415 416 6.836577 TTTTCAAAATCGCGATTTTTCCTT 57.163 29.167 42.03 27.09 45.67 3.36
416 417 6.128580 CCATTTTCAAAATCGCGATTTTTCCT 60.129 34.615 42.03 27.41 45.67 3.36
417 418 6.014898 CCATTTTCAAAATCGCGATTTTTCC 58.985 36.000 42.03 0.00 45.67 3.13
418 419 6.516017 CACCATTTTCAAAATCGCGATTTTTC 59.484 34.615 42.03 0.00 45.67 2.29
419 420 6.201806 TCACCATTTTCAAAATCGCGATTTTT 59.798 30.769 42.03 30.20 45.67 1.94
421 422 5.226396 TCACCATTTTCAAAATCGCGATTT 58.774 33.333 34.99 34.99 42.35 2.17
422 423 4.804108 TCACCATTTTCAAAATCGCGATT 58.196 34.783 27.94 27.94 0.00 3.34
423 424 4.433186 TCACCATTTTCAAAATCGCGAT 57.567 36.364 17.62 17.62 0.00 4.58
424 425 3.906014 TCACCATTTTCAAAATCGCGA 57.094 38.095 13.09 13.09 0.00 5.87
425 426 3.733224 TGTTCACCATTTTCAAAATCGCG 59.267 39.130 0.00 0.00 0.00 5.87
426 427 5.844301 ATGTTCACCATTTTCAAAATCGC 57.156 34.783 0.00 0.00 0.00 4.58
429 430 9.887629 TGCATATATGTTCACCATTTTCAAAAT 57.112 25.926 14.14 0.00 34.86 1.82
430 431 9.149225 GTGCATATATGTTCACCATTTTCAAAA 57.851 29.630 14.14 0.00 34.86 2.44
431 432 8.530311 AGTGCATATATGTTCACCATTTTCAAA 58.470 29.630 14.14 0.00 34.86 2.69
432 433 8.065473 AGTGCATATATGTTCACCATTTTCAA 57.935 30.769 14.14 0.00 34.86 2.69
433 434 7.643569 AGTGCATATATGTTCACCATTTTCA 57.356 32.000 14.14 0.00 34.86 2.69
434 435 8.931385 AAAGTGCATATATGTTCACCATTTTC 57.069 30.769 14.14 0.00 34.86 2.29
435 436 9.723601 AAAAAGTGCATATATGTTCACCATTTT 57.276 25.926 14.14 17.27 34.86 1.82
460 461 7.884354 ACAGTTCCTATATTGTTACCCGAAAAA 59.116 33.333 0.00 0.00 0.00 1.94
461 462 7.396418 ACAGTTCCTATATTGTTACCCGAAAA 58.604 34.615 0.00 0.00 0.00 2.29
462 463 6.949715 ACAGTTCCTATATTGTTACCCGAAA 58.050 36.000 0.00 0.00 0.00 3.46
463 464 6.549433 ACAGTTCCTATATTGTTACCCGAA 57.451 37.500 0.00 0.00 0.00 4.30
464 465 6.549433 AACAGTTCCTATATTGTTACCCGA 57.451 37.500 0.00 0.00 32.41 5.14
465 466 5.461078 CGAACAGTTCCTATATTGTTACCCG 59.539 44.000 7.76 0.00 34.18 5.28
466 467 5.235831 GCGAACAGTTCCTATATTGTTACCC 59.764 44.000 7.76 0.00 34.18 3.69
467 468 6.047231 AGCGAACAGTTCCTATATTGTTACC 58.953 40.000 7.76 0.00 34.18 2.85
468 469 8.813643 ATAGCGAACAGTTCCTATATTGTTAC 57.186 34.615 16.68 0.00 34.18 2.50
470 471 9.998106 ATAATAGCGAACAGTTCCTATATTGTT 57.002 29.630 17.76 9.98 36.54 2.83
471 472 9.998106 AATAATAGCGAACAGTTCCTATATTGT 57.002 29.630 17.76 11.17 0.00 2.71
481 482 9.632807 TGCAATTTTTAATAATAGCGAACAGTT 57.367 25.926 0.00 0.00 0.00 3.16
482 483 9.801873 ATGCAATTTTTAATAATAGCGAACAGT 57.198 25.926 0.00 0.00 0.00 3.55
484 485 9.794685 TCATGCAATTTTTAATAATAGCGAACA 57.205 25.926 0.00 0.00 0.00 3.18
506 507 8.914328 TTTTTCTACATGTGTGCATATTCATG 57.086 30.769 9.11 11.08 42.00 3.07
597 598 8.077386 AGCGATGGAAGTCGTTTTTATTAAAAA 58.923 29.630 9.69 9.69 43.27 1.94
598 599 7.586747 AGCGATGGAAGTCGTTTTTATTAAAA 58.413 30.769 0.00 0.00 43.27 1.52
599 600 7.136289 AGCGATGGAAGTCGTTTTTATTAAA 57.864 32.000 0.00 0.00 43.27 1.52
600 601 6.183360 GGAGCGATGGAAGTCGTTTTTATTAA 60.183 38.462 0.00 0.00 43.27 1.40
635 931 3.460825 ACTACCTAGGGCATTTTGGAGA 58.539 45.455 14.81 0.00 0.00 3.71
735 1297 1.355210 CGCACACCAAGTCACCAAC 59.645 57.895 0.00 0.00 0.00 3.77
736 1298 2.477176 GCGCACACCAAGTCACCAA 61.477 57.895 0.30 0.00 0.00 3.67
737 1299 2.899838 GCGCACACCAAGTCACCA 60.900 61.111 0.30 0.00 0.00 4.17
738 1300 0.953471 TATGCGCACACCAAGTCACC 60.953 55.000 14.90 0.00 0.00 4.02
739 1301 0.443869 CTATGCGCACACCAAGTCAC 59.556 55.000 14.90 0.00 0.00 3.67
740 1302 0.034756 ACTATGCGCACACCAAGTCA 59.965 50.000 14.90 0.00 0.00 3.41
741 1303 1.927174 CTACTATGCGCACACCAAGTC 59.073 52.381 14.90 0.00 0.00 3.01
742 1304 1.405526 CCTACTATGCGCACACCAAGT 60.406 52.381 14.90 13.89 0.00 3.16
854 1416 1.375523 GAGCGCCTTTTTCTCGGGA 60.376 57.895 2.29 0.00 0.00 5.14
883 1445 2.741878 CGTCCAGTCTCTCTCTCTCTCC 60.742 59.091 0.00 0.00 0.00 3.71
980 1551 1.943116 CTCCACACCTCGCTCTCCAG 61.943 65.000 0.00 0.00 0.00 3.86
1015 1586 3.812019 CGACGGAGGAGGACACGG 61.812 72.222 0.00 0.00 0.00 4.94
1143 1714 1.814527 GGTGTAGCCCTCGTCGAAT 59.185 57.895 0.00 0.00 0.00 3.34
1164 1735 4.314440 TTGCCGCTGCCGAAGAGT 62.314 61.111 0.00 0.00 36.33 3.24
1267 1838 5.946389 GCATATTACGTCGAAATCGCATAAG 59.054 40.000 0.00 0.00 39.60 1.73
1337 1908 1.827969 CCTTAGGAGACTGGACACTGG 59.172 57.143 0.00 0.00 43.88 4.00
1339 1910 1.203187 TGCCTTAGGAGACTGGACACT 60.203 52.381 0.69 0.00 43.88 3.55
1340 1911 1.205893 CTGCCTTAGGAGACTGGACAC 59.794 57.143 0.69 0.00 43.88 3.67
1341 1912 1.077169 TCTGCCTTAGGAGACTGGACA 59.923 52.381 0.69 0.00 43.88 4.02
1342 1913 1.853963 TCTGCCTTAGGAGACTGGAC 58.146 55.000 0.69 0.00 43.88 4.02
1343 1914 2.461695 CTTCTGCCTTAGGAGACTGGA 58.538 52.381 0.69 0.00 43.88 3.86
1344 1915 1.484240 CCTTCTGCCTTAGGAGACTGG 59.516 57.143 0.69 3.99 43.88 4.00
1345 1916 2.461695 TCCTTCTGCCTTAGGAGACTG 58.538 52.381 0.69 0.00 43.88 3.51
1369 1940 4.486125 AGTTGGCAAAATCACAAAACCT 57.514 36.364 0.00 0.00 0.00 3.50
1410 1981 1.955080 AGAGGAAGACGAAGACACGTT 59.045 47.619 0.00 0.00 46.52 3.99
1586 2157 6.017275 GCATGTTTTTGAATTGATTTGGTGGA 60.017 34.615 0.00 0.00 0.00 4.02
1604 2175 7.320443 TCTTTAGATTCGCATTAGCATGTTT 57.680 32.000 0.00 0.00 42.27 2.83
1616 2187 5.476752 ACAAGCATCTTCTTTAGATTCGC 57.523 39.130 0.00 0.00 41.78 4.70
1621 2192 6.942532 ACACAAACAAGCATCTTCTTTAGA 57.057 33.333 0.00 0.00 37.28 2.10
1734 2305 4.947147 TTGGTCTGCACCCGCCAC 62.947 66.667 0.00 0.00 42.99 5.01
1871 2442 1.064463 TGGGGAAGAATGAGATGGTGC 60.064 52.381 0.00 0.00 0.00 5.01
1874 2445 3.752665 CAGATGGGGAAGAATGAGATGG 58.247 50.000 0.00 0.00 0.00 3.51
1879 2450 0.911769 ACGCAGATGGGGAAGAATGA 59.088 50.000 1.78 0.00 0.00 2.57
1932 2503 0.741221 CCGAAGTAGGCCAAGCAGAC 60.741 60.000 5.01 0.00 0.00 3.51
1987 2558 6.329986 TCCACACCAGGAATATCATCATAACT 59.670 38.462 0.00 0.00 33.93 2.24
2053 2627 1.757682 AACGCCAAAAAGGTCTGTGA 58.242 45.000 0.00 0.00 40.61 3.58
2194 2768 6.991485 ATTTCTTTATGTGCAGAAACGTTG 57.009 33.333 0.00 0.00 40.87 4.10
2195 2769 8.094798 TCTATTTCTTTATGTGCAGAAACGTT 57.905 30.769 0.00 0.00 40.87 3.99
2247 2827 2.032054 TGCGCAGTTCACAAAAAGAGAG 59.968 45.455 5.66 0.00 0.00 3.20
2264 2844 1.838913 AAACACAAATGTCAGTGCGC 58.161 45.000 0.00 0.00 38.45 6.09
2265 2845 2.535166 CCAAAACACAAATGTCAGTGCG 59.465 45.455 0.00 0.00 38.45 5.34
2282 2862 2.076100 CACGTAGAATCTGCAGCCAAA 58.924 47.619 9.47 0.00 0.00 3.28
2283 2863 1.675714 CCACGTAGAATCTGCAGCCAA 60.676 52.381 9.47 0.00 0.00 4.52
2419 2999 2.925706 TTGACCCTGTAGCGGCCA 60.926 61.111 2.24 0.00 0.00 5.36
2433 3013 0.314618 TGGCGCGTACTTGTAGTTGA 59.685 50.000 8.43 0.00 0.00 3.18
2462 3042 2.202453 GACGAGGTCGCCGAACTC 60.202 66.667 21.92 21.92 42.43 3.01
2580 3160 0.737715 GAAAGCAGACATCGACGCCT 60.738 55.000 0.00 0.00 0.00 5.52
2581 3161 1.014044 TGAAAGCAGACATCGACGCC 61.014 55.000 0.00 0.00 0.00 5.68
2585 3165 0.737367 CGCCTGAAAGCAGACATCGA 60.737 55.000 0.00 0.00 45.17 3.59
2593 3173 4.577677 TGCCCACGCCTGAAAGCA 62.578 61.111 0.00 0.00 0.00 3.91
2605 3185 0.252696 AGGAGTAGGACATGTGCCCA 60.253 55.000 14.38 0.00 0.00 5.36
2608 3188 2.482142 GCAGTAGGAGTAGGACATGTGC 60.482 54.545 9.70 9.70 0.00 4.57
2841 3421 2.417516 CGCCTCTGTACATCCCCG 59.582 66.667 0.00 0.00 0.00 5.73
2876 3456 1.973281 CGCAGTCACCCTGGCAAAT 60.973 57.895 0.00 0.00 41.81 2.32
2877 3457 2.594303 CGCAGTCACCCTGGCAAA 60.594 61.111 0.00 0.00 41.81 3.68
2972 3552 2.088763 CAATGCTCGCGTGAGTCGT 61.089 57.895 25.72 16.45 44.48 4.34
2984 3564 1.995626 AGGGCGGGAGTACAATGCT 60.996 57.895 0.00 0.00 0.00 3.79
3074 3654 4.802051 ATCAATGGCAGGCGCGGT 62.802 61.111 8.83 0.00 39.92 5.68
3075 3655 4.260355 CATCAATGGCAGGCGCGG 62.260 66.667 8.83 0.00 39.92 6.46
3076 3656 2.453773 GATCATCAATGGCAGGCGCG 62.454 60.000 0.00 0.00 39.92 6.86
3077 3657 1.285023 GATCATCAATGGCAGGCGC 59.715 57.895 0.00 0.00 37.44 6.53
3078 3658 1.026584 TTGATCATCAATGGCAGGCG 58.973 50.000 0.00 0.00 30.26 5.52
3079 3659 3.069016 TGAATTGATCATCAATGGCAGGC 59.931 43.478 13.83 1.20 45.57 4.85
3130 3710 1.202452 TGCATGCGACAGTGATAGGAG 60.202 52.381 14.09 0.00 0.00 3.69
3134 3714 2.314323 ACATGCATGCGACAGTGATA 57.686 45.000 26.53 0.00 0.00 2.15
3229 3809 0.927994 CGCGAGATCACGAGCTCTTC 60.928 60.000 17.02 3.61 41.38 2.87
3230 3810 1.063327 CGCGAGATCACGAGCTCTT 59.937 57.895 17.02 0.00 41.38 2.85
3231 3811 2.712539 CGCGAGATCACGAGCTCT 59.287 61.111 17.02 0.00 41.38 4.09
3250 3830 1.883275 TGCGTTCCACCGATGAAAATT 59.117 42.857 0.00 0.00 0.00 1.82
3274 3854 1.151679 TTCCACCGATGTGCCCAAA 59.848 52.632 0.00 0.00 41.35 3.28
3275 3855 1.602323 GTTCCACCGATGTGCCCAA 60.602 57.895 0.00 0.00 41.35 4.12
3276 3856 2.033448 GTTCCACCGATGTGCCCA 59.967 61.111 0.00 0.00 41.35 5.36
3277 3857 3.124921 CGTTCCACCGATGTGCCC 61.125 66.667 0.00 0.00 41.35 5.36
3278 3858 3.799755 GCGTTCCACCGATGTGCC 61.800 66.667 0.00 0.00 41.35 5.01
3279 3859 3.047280 TGCGTTCCACCGATGTGC 61.047 61.111 0.00 0.00 41.35 4.57
3280 3860 1.667830 AGTGCGTTCCACCGATGTG 60.668 57.895 0.00 0.00 45.83 3.21
3281 3861 1.667830 CAGTGCGTTCCACCGATGT 60.668 57.895 0.00 0.00 45.83 3.06
3282 3862 1.227999 AACAGTGCGTTCCACCGATG 61.228 55.000 0.00 0.00 45.83 3.84
3283 3863 0.534203 AAACAGTGCGTTCCACCGAT 60.534 50.000 0.00 0.00 45.83 4.18
3284 3864 1.153329 AAACAGTGCGTTCCACCGA 60.153 52.632 0.00 0.00 45.83 4.69
3285 3865 1.010125 CAAACAGTGCGTTCCACCG 60.010 57.895 0.00 0.00 45.83 4.94
3286 3866 1.358759 CCAAACAGTGCGTTCCACC 59.641 57.895 0.00 0.00 45.83 4.61
3287 3867 1.358759 CCCAAACAGTGCGTTCCAC 59.641 57.895 0.00 0.00 45.01 4.02
3288 3868 2.485795 GCCCAAACAGTGCGTTCCA 61.486 57.895 0.00 0.00 36.59 3.53
3289 3869 2.335011 GCCCAAACAGTGCGTTCC 59.665 61.111 0.00 0.00 36.59 3.62
3290 3870 1.299089 GTGCCCAAACAGTGCGTTC 60.299 57.895 0.00 0.00 36.59 3.95
3291 3871 1.391157 ATGTGCCCAAACAGTGCGTT 61.391 50.000 0.00 0.00 40.50 4.84
3292 3872 1.795170 GATGTGCCCAAACAGTGCGT 61.795 55.000 0.00 0.00 32.52 5.24
3293 3873 1.081242 GATGTGCCCAAACAGTGCG 60.081 57.895 0.00 0.00 32.52 5.34
3294 3874 1.081242 CGATGTGCCCAAACAGTGC 60.081 57.895 0.00 0.00 32.52 4.40
3295 3875 1.172180 ACCGATGTGCCCAAACAGTG 61.172 55.000 0.00 0.00 32.52 3.66
3296 3876 1.150536 ACCGATGTGCCCAAACAGT 59.849 52.632 0.00 0.00 32.52 3.55
3297 3877 1.580942 CACCGATGTGCCCAAACAG 59.419 57.895 0.00 0.00 35.31 3.16
3298 3878 1.900981 CCACCGATGTGCCCAAACA 60.901 57.895 0.00 0.00 41.35 2.83
3299 3879 1.175983 TTCCACCGATGTGCCCAAAC 61.176 55.000 0.00 0.00 41.35 2.93
3300 3880 1.151679 TTCCACCGATGTGCCCAAA 59.848 52.632 0.00 0.00 41.35 3.28
3301 3881 1.602323 GTTCCACCGATGTGCCCAA 60.602 57.895 0.00 0.00 41.35 4.12
3302 3882 2.033448 GTTCCACCGATGTGCCCA 59.967 61.111 0.00 0.00 41.35 5.36
3303 3883 3.124921 CGTTCCACCGATGTGCCC 61.125 66.667 0.00 0.00 41.35 5.36
3304 3884 3.799755 GCGTTCCACCGATGTGCC 61.800 66.667 0.00 0.00 41.35 5.01
3305 3885 3.047280 TGCGTTCCACCGATGTGC 61.047 61.111 0.00 0.00 41.35 4.57
3306 3886 1.667830 AGTGCGTTCCACCGATGTG 60.668 57.895 0.00 0.00 45.83 3.21
3307 3887 1.667830 CAGTGCGTTCCACCGATGT 60.668 57.895 0.00 0.00 45.83 3.06
3308 3888 1.227999 AACAGTGCGTTCCACCGATG 61.228 55.000 0.00 0.00 45.83 3.84
3309 3889 0.534203 AAACAGTGCGTTCCACCGAT 60.534 50.000 0.00 0.00 45.83 4.18
3310 3890 1.153329 AAACAGTGCGTTCCACCGA 60.153 52.632 0.00 0.00 45.83 4.69
3311 3891 1.010125 CAAACAGTGCGTTCCACCG 60.010 57.895 0.00 0.00 45.83 4.94
3312 3892 1.358759 CCAAACAGTGCGTTCCACC 59.641 57.895 0.00 0.00 45.83 4.61
3313 3893 1.358759 CCCAAACAGTGCGTTCCAC 59.641 57.895 0.00 0.00 45.01 4.02
3314 3894 2.485795 GCCCAAACAGTGCGTTCCA 61.486 57.895 0.00 0.00 36.59 3.53
3315 3895 2.335011 GCCCAAACAGTGCGTTCC 59.665 61.111 0.00 0.00 36.59 3.62
3316 3896 2.051345 CGCCCAAACAGTGCGTTC 60.051 61.111 0.00 0.00 43.12 3.95
3450 4038 2.978946 GCCCCGGAATCCCTGACAA 61.979 63.158 0.73 0.00 0.00 3.18
3520 4110 1.372997 GCGGCTGACAAGAACGAGA 60.373 57.895 0.00 0.00 0.00 4.04
3575 4165 2.912542 CTCTATCGGCCGGGAGCA 60.913 66.667 27.83 5.39 46.50 4.26
3580 4170 0.249489 CAGTTTCCTCTATCGGCCGG 60.249 60.000 27.83 9.82 0.00 6.13
3649 4239 3.305897 CGTGCAATCGTTTACATAGCAGA 59.694 43.478 0.00 0.00 0.00 4.26
3660 4252 5.694816 TCAAATTATGTTCGTGCAATCGTT 58.305 33.333 0.00 0.00 0.00 3.85
3681 4273 3.458163 GGGTCCAGCCGTCGATCA 61.458 66.667 0.00 0.00 38.44 2.92
3691 4283 4.194640 CAATCACTGATAAGTGGGTCCAG 58.805 47.826 10.50 0.00 40.03 3.86
3692 4284 3.587061 ACAATCACTGATAAGTGGGTCCA 59.413 43.478 10.50 0.00 40.03 4.02
3753 4348 3.265737 TGTTATTACTGACCCACCAGCAT 59.734 43.478 0.00 0.00 37.68 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.