Multiple sequence alignment - TraesCS5B01G201200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G201200 chr5B 100.000 6032 0 0 1 6032 364121960 364127991 0.000000e+00 11140.0
1 TraesCS5B01G201200 chr5B 98.000 100 2 0 547 646 27484840 27484741 2.230000e-39 174.0
2 TraesCS5B01G201200 chr5B 93.396 106 6 1 544 648 696154632 696154527 8.090000e-34 156.0
3 TraesCS5B01G201200 chr5A 95.808 4866 151 21 645 5487 410494942 410499777 0.000000e+00 7806.0
4 TraesCS5B01G201200 chr5A 80.769 364 42 16 5691 6032 410500066 410500423 6.000000e-65 259.0
5 TraesCS5B01G201200 chr5A 88.554 166 18 1 5489 5653 410499903 410500068 3.690000e-47 200.0
6 TraesCS5B01G201200 chr5A 93.519 108 6 1 539 645 703665908 703665801 6.260000e-35 159.0
7 TraesCS5B01G201200 chr5D 93.686 3896 162 42 1578 5448 315919282 315923118 0.000000e+00 5755.0
8 TraesCS5B01G201200 chr5D 92.649 857 30 10 698 1533 315917806 315918650 0.000000e+00 1203.0
9 TraesCS5B01G201200 chr5D 79.262 569 52 26 5483 6032 315923269 315923790 2.690000e-88 337.0
10 TraesCS5B01G201200 chr7B 97.980 99 2 0 547 645 125882283 125882185 8.040000e-39 172.0
11 TraesCS5B01G201200 chr2A 95.370 108 4 1 538 645 89025119 89025013 2.890000e-38 171.0
12 TraesCS5B01G201200 chr3B 93.103 116 4 3 535 646 23170057 23170172 3.740000e-37 167.0
13 TraesCS5B01G201200 chr3B 89.610 77 8 0 1469 1545 659588167 659588091 1.380000e-16 99.0
14 TraesCS5B01G201200 chr6A 96.000 100 4 0 547 646 11136031 11135932 4.840000e-36 163.0
15 TraesCS5B01G201200 chr4A 94.286 105 6 0 547 651 718108212 718108316 1.740000e-35 161.0
16 TraesCS5B01G201200 chr4A 87.500 128 11 2 547 673 725926789 725926666 6.300000e-30 143.0
17 TraesCS5B01G201200 chr4A 93.151 73 5 0 1470 1542 718869880 718869952 2.300000e-19 108.0
18 TraesCS5B01G201200 chr4A 91.549 71 6 0 1469 1539 631960048 631960118 1.380000e-16 99.0
19 TraesCS5B01G201200 chr4A 88.312 77 8 1 1469 1545 715806658 715806583 2.320000e-14 91.6
20 TraesCS5B01G201200 chr4B 91.892 74 6 0 1472 1545 654204884 654204957 2.970000e-18 104.0
21 TraesCS5B01G201200 chr2D 90.789 76 7 0 1470 1545 446082912 446082987 1.070000e-17 102.0
22 TraesCS5B01G201200 chr6B 88.000 75 9 0 1471 1545 185669339 185669413 8.330000e-14 89.8
23 TraesCS5B01G201200 chr1B 86.842 76 10 0 1470 1545 629772992 629772917 1.080000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G201200 chr5B 364121960 364127991 6031 False 11140.000000 11140 100.000000 1 6032 1 chr5B.!!$F1 6031
1 TraesCS5B01G201200 chr5A 410494942 410500423 5481 False 2755.000000 7806 88.377000 645 6032 3 chr5A.!!$F1 5387
2 TraesCS5B01G201200 chr5D 315917806 315923790 5984 False 2431.666667 5755 88.532333 698 6032 3 chr5D.!!$F1 5334

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
205 206 0.029681 ATGAGGCCATGACCTAGGGT 60.030 55.0 14.81 0.00 41.32 4.34 F
377 378 0.036306 CACCACCAACCCTAGTCACC 59.964 60.0 0.00 0.00 0.00 4.02 F
563 564 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.0 14.79 0.04 33.41 4.30 F
1035 1048 0.602638 CCCTTGCCGCGATGCTTATA 60.603 55.0 8.23 0.00 0.00 0.98 F
2485 3099 0.592637 CAGAATTGAACGGCAGTGCA 59.407 50.0 18.61 0.00 33.08 4.57 F
3554 4171 1.246649 TGTTCGGATTTGTGCATGCT 58.753 45.0 20.33 0.00 0.00 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1545 1668 0.177373 GGTTGCTAACTACTCCCCCG 59.823 60.000 0.00 0.0 0.00 5.73 R
2172 2786 2.092323 GTACCTGATGAAAGCCCCAAC 58.908 52.381 0.00 0.0 0.00 3.77 R
2329 2943 3.259625 TGCCTGTGCACTGTATTACTGTA 59.740 43.478 19.41 0.0 44.23 2.74 R
2932 3546 4.998051 AGAAATTTGGGCTCCTGTAAAGA 58.002 39.130 0.00 0.0 0.00 2.52 R
3774 4393 1.534729 AAAGCGACCCTCCAATCAAC 58.465 50.000 0.00 0.0 0.00 3.18 R
5120 5760 0.105760 TTCCCACAGGCATTGGTGTT 60.106 50.000 3.95 0.0 33.19 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.954035 AGACCCTTAGGACCACTTCC 58.046 55.000 0.00 0.00 46.33 3.46
30 31 2.952310 GGACCACTTCCATTATCCAAGC 59.048 50.000 0.00 0.00 45.10 4.01
31 32 3.620488 GACCACTTCCATTATCCAAGCA 58.380 45.455 0.00 0.00 0.00 3.91
32 33 4.016444 GACCACTTCCATTATCCAAGCAA 58.984 43.478 0.00 0.00 0.00 3.91
33 34 4.415596 ACCACTTCCATTATCCAAGCAAA 58.584 39.130 0.00 0.00 0.00 3.68
34 35 4.837860 ACCACTTCCATTATCCAAGCAAAA 59.162 37.500 0.00 0.00 0.00 2.44
35 36 5.170748 CCACTTCCATTATCCAAGCAAAAC 58.829 41.667 0.00 0.00 0.00 2.43
36 37 5.170748 CACTTCCATTATCCAAGCAAAACC 58.829 41.667 0.00 0.00 0.00 3.27
37 38 4.837860 ACTTCCATTATCCAAGCAAAACCA 59.162 37.500 0.00 0.00 0.00 3.67
38 39 5.047092 ACTTCCATTATCCAAGCAAAACCAG 60.047 40.000 0.00 0.00 0.00 4.00
39 40 3.768757 TCCATTATCCAAGCAAAACCAGG 59.231 43.478 0.00 0.00 0.00 4.45
40 41 3.768757 CCATTATCCAAGCAAAACCAGGA 59.231 43.478 0.00 0.00 0.00 3.86
41 42 4.222588 CCATTATCCAAGCAAAACCAGGAA 59.777 41.667 0.00 0.00 31.17 3.36
42 43 4.864704 TTATCCAAGCAAAACCAGGAAC 57.135 40.909 0.00 0.00 31.17 3.62
43 44 2.151502 TCCAAGCAAAACCAGGAACA 57.848 45.000 0.00 0.00 0.00 3.18
44 45 2.461695 TCCAAGCAAAACCAGGAACAA 58.538 42.857 0.00 0.00 0.00 2.83
45 46 2.167487 TCCAAGCAAAACCAGGAACAAC 59.833 45.455 0.00 0.00 0.00 3.32
46 47 2.192624 CAAGCAAAACCAGGAACAACG 58.807 47.619 0.00 0.00 0.00 4.10
47 48 1.757682 AGCAAAACCAGGAACAACGA 58.242 45.000 0.00 0.00 0.00 3.85
48 49 2.096248 AGCAAAACCAGGAACAACGAA 58.904 42.857 0.00 0.00 0.00 3.85
49 50 2.099098 AGCAAAACCAGGAACAACGAAG 59.901 45.455 0.00 0.00 0.00 3.79
50 51 2.798145 GCAAAACCAGGAACAACGAAGG 60.798 50.000 0.00 0.00 0.00 3.46
51 52 2.685897 CAAAACCAGGAACAACGAAGGA 59.314 45.455 0.00 0.00 0.00 3.36
52 53 2.256117 AACCAGGAACAACGAAGGAG 57.744 50.000 0.00 0.00 0.00 3.69
53 54 1.420430 ACCAGGAACAACGAAGGAGA 58.580 50.000 0.00 0.00 0.00 3.71
54 55 1.766496 ACCAGGAACAACGAAGGAGAA 59.234 47.619 0.00 0.00 0.00 2.87
55 56 2.224305 ACCAGGAACAACGAAGGAGAAG 60.224 50.000 0.00 0.00 0.00 2.85
56 57 2.417719 CAGGAACAACGAAGGAGAAGG 58.582 52.381 0.00 0.00 0.00 3.46
57 58 1.157585 GGAACAACGAAGGAGAAGGC 58.842 55.000 0.00 0.00 0.00 4.35
58 59 1.542547 GGAACAACGAAGGAGAAGGCA 60.543 52.381 0.00 0.00 0.00 4.75
59 60 2.218603 GAACAACGAAGGAGAAGGCAA 58.781 47.619 0.00 0.00 0.00 4.52
60 61 1.594331 ACAACGAAGGAGAAGGCAAC 58.406 50.000 0.00 0.00 0.00 4.17
61 62 0.875059 CAACGAAGGAGAAGGCAACC 59.125 55.000 0.00 0.00 37.17 3.77
62 63 0.472471 AACGAAGGAGAAGGCAACCA 59.528 50.000 0.00 0.00 37.17 3.67
63 64 0.250338 ACGAAGGAGAAGGCAACCAC 60.250 55.000 0.00 0.00 37.17 4.16
64 65 1.291877 CGAAGGAGAAGGCAACCACG 61.292 60.000 0.00 0.00 37.17 4.94
65 66 0.034896 GAAGGAGAAGGCAACCACGA 59.965 55.000 0.00 0.00 37.17 4.35
66 67 0.250338 AAGGAGAAGGCAACCACGAC 60.250 55.000 0.00 0.00 37.17 4.34
67 68 2.027625 GGAGAAGGCAACCACGACG 61.028 63.158 0.00 0.00 37.17 5.12
68 69 2.665185 AGAAGGCAACCACGACGC 60.665 61.111 0.00 0.00 37.17 5.19
69 70 3.723348 GAAGGCAACCACGACGCC 61.723 66.667 0.00 0.00 46.62 5.68
74 75 3.345808 CAACCACGACGCCACCTG 61.346 66.667 0.00 0.00 0.00 4.00
75 76 3.857038 AACCACGACGCCACCTGT 61.857 61.111 0.00 0.00 0.00 4.00
76 77 4.602259 ACCACGACGCCACCTGTG 62.602 66.667 0.00 0.00 0.00 3.66
79 80 4.969196 ACGACGCCACCTGTGCAG 62.969 66.667 0.00 0.00 0.00 4.41
80 81 4.662961 CGACGCCACCTGTGCAGA 62.663 66.667 0.02 0.00 0.00 4.26
81 82 3.044305 GACGCCACCTGTGCAGAC 61.044 66.667 0.02 0.00 0.00 3.51
82 83 3.807631 GACGCCACCTGTGCAGACA 62.808 63.158 0.02 0.00 0.00 3.41
91 92 3.527186 GTGCAGACACGTCACTCG 58.473 61.111 0.00 0.00 46.00 4.18
101 102 4.773117 GTCACTCGTCCCCGCGTC 62.773 72.222 4.92 0.00 27.62 5.19
116 117 4.521062 GTCGCTGCTCCGGCTCAT 62.521 66.667 0.00 0.00 39.59 2.90
117 118 4.519437 TCGCTGCTCCGGCTCATG 62.519 66.667 0.00 0.00 39.59 3.07
145 146 2.265739 GCCATGAGAGCCACGACA 59.734 61.111 0.00 0.00 0.00 4.35
146 147 1.375908 GCCATGAGAGCCACGACAA 60.376 57.895 0.00 0.00 0.00 3.18
147 148 0.955428 GCCATGAGAGCCACGACAAA 60.955 55.000 0.00 0.00 0.00 2.83
148 149 0.798776 CCATGAGAGCCACGACAAAC 59.201 55.000 0.00 0.00 0.00 2.93
149 150 1.511850 CATGAGAGCCACGACAAACA 58.488 50.000 0.00 0.00 0.00 2.83
150 151 1.872952 CATGAGAGCCACGACAAACAA 59.127 47.619 0.00 0.00 0.00 2.83
151 152 1.295792 TGAGAGCCACGACAAACAAC 58.704 50.000 0.00 0.00 0.00 3.32
152 153 0.232303 GAGAGCCACGACAAACAACG 59.768 55.000 0.00 0.00 0.00 4.10
153 154 1.368850 GAGCCACGACAAACAACGC 60.369 57.895 0.00 0.00 0.00 4.84
154 155 2.353030 GCCACGACAAACAACGCC 60.353 61.111 0.00 0.00 0.00 5.68
155 156 2.830285 GCCACGACAAACAACGCCT 61.830 57.895 0.00 0.00 0.00 5.52
156 157 1.278637 CCACGACAAACAACGCCTC 59.721 57.895 0.00 0.00 0.00 4.70
157 158 1.083657 CACGACAAACAACGCCTCG 60.084 57.895 0.00 0.00 0.00 4.63
158 159 1.227031 ACGACAAACAACGCCTCGA 60.227 52.632 0.00 0.00 0.00 4.04
159 160 0.599204 ACGACAAACAACGCCTCGAT 60.599 50.000 0.00 0.00 0.00 3.59
160 161 0.093026 CGACAAACAACGCCTCGATC 59.907 55.000 0.00 0.00 0.00 3.69
161 162 0.442699 GACAAACAACGCCTCGATCC 59.557 55.000 0.00 0.00 0.00 3.36
162 163 0.953960 ACAAACAACGCCTCGATCCC 60.954 55.000 0.00 0.00 0.00 3.85
163 164 1.376812 AAACAACGCCTCGATCCCC 60.377 57.895 0.00 0.00 0.00 4.81
164 165 2.814913 AAACAACGCCTCGATCCCCC 62.815 60.000 0.00 0.00 0.00 5.40
165 166 4.891727 CAACGCCTCGATCCCCCG 62.892 72.222 0.00 0.00 0.00 5.73
183 184 3.694538 GCGGCAACCAAAGGGCAT 61.695 61.111 0.00 0.00 37.90 4.40
184 185 2.573340 CGGCAACCAAAGGGCATC 59.427 61.111 0.00 0.00 37.90 3.91
185 186 2.573340 GGCAACCAAAGGGCATCG 59.427 61.111 0.00 0.00 37.90 3.84
186 187 1.976474 GGCAACCAAAGGGCATCGA 60.976 57.895 0.00 0.00 37.90 3.59
187 188 1.322538 GGCAACCAAAGGGCATCGAT 61.323 55.000 0.00 0.00 37.90 3.59
188 189 0.179129 GCAACCAAAGGGCATCGATG 60.179 55.000 21.27 21.27 37.90 3.84
189 190 1.462616 CAACCAAAGGGCATCGATGA 58.537 50.000 29.20 0.00 37.90 2.92
190 191 1.402968 CAACCAAAGGGCATCGATGAG 59.597 52.381 29.20 3.74 37.90 2.90
191 192 0.107017 ACCAAAGGGCATCGATGAGG 60.107 55.000 29.20 19.22 37.90 3.86
192 193 1.450531 CCAAAGGGCATCGATGAGGC 61.451 60.000 29.20 14.85 38.72 4.70
197 198 4.785767 GCATCGATGAGGCCATGA 57.214 55.556 29.20 0.00 32.93 3.07
198 199 2.242113 GCATCGATGAGGCCATGAC 58.758 57.895 29.20 3.85 32.93 3.06
199 200 1.233285 GCATCGATGAGGCCATGACC 61.233 60.000 29.20 3.09 32.93 4.02
200 201 0.395686 CATCGATGAGGCCATGACCT 59.604 55.000 21.02 0.00 45.04 3.85
201 202 1.620323 CATCGATGAGGCCATGACCTA 59.380 52.381 21.02 0.00 41.32 3.08
202 203 1.332195 TCGATGAGGCCATGACCTAG 58.668 55.000 5.01 0.00 41.32 3.02
203 204 0.319728 CGATGAGGCCATGACCTAGG 59.680 60.000 7.41 7.41 41.32 3.02
204 205 0.689623 GATGAGGCCATGACCTAGGG 59.310 60.000 14.81 0.00 41.32 3.53
205 206 0.029681 ATGAGGCCATGACCTAGGGT 60.030 55.000 14.81 0.00 41.32 4.34
206 207 0.253160 TGAGGCCATGACCTAGGGTT 60.253 55.000 14.81 0.00 41.32 4.11
207 208 0.919710 GAGGCCATGACCTAGGGTTT 59.080 55.000 14.81 0.00 41.32 3.27
208 209 1.285078 GAGGCCATGACCTAGGGTTTT 59.715 52.381 14.81 0.00 41.32 2.43
209 210 1.005924 AGGCCATGACCTAGGGTTTTG 59.994 52.381 14.81 5.08 38.67 2.44
210 211 1.005450 GGCCATGACCTAGGGTTTTGA 59.995 52.381 14.81 0.00 35.25 2.69
211 212 2.556559 GGCCATGACCTAGGGTTTTGAA 60.557 50.000 14.81 0.00 35.25 2.69
212 213 3.161866 GCCATGACCTAGGGTTTTGAAA 58.838 45.455 14.81 0.00 35.25 2.69
213 214 3.193479 GCCATGACCTAGGGTTTTGAAAG 59.807 47.826 14.81 0.00 35.25 2.62
214 215 4.662278 CCATGACCTAGGGTTTTGAAAGA 58.338 43.478 14.81 0.00 35.25 2.52
215 216 5.264395 CCATGACCTAGGGTTTTGAAAGAT 58.736 41.667 14.81 0.00 35.25 2.40
216 217 5.358160 CCATGACCTAGGGTTTTGAAAGATC 59.642 44.000 14.81 0.00 35.25 2.75
217 218 5.843019 TGACCTAGGGTTTTGAAAGATCT 57.157 39.130 14.81 0.00 35.25 2.75
218 219 5.805728 TGACCTAGGGTTTTGAAAGATCTC 58.194 41.667 14.81 0.00 35.25 2.75
219 220 5.180810 ACCTAGGGTTTTGAAAGATCTCC 57.819 43.478 14.81 0.00 27.29 3.71
220 221 4.018324 ACCTAGGGTTTTGAAAGATCTCCC 60.018 45.833 14.81 5.44 27.29 4.30
221 222 4.018415 CCTAGGGTTTTGAAAGATCTCCCA 60.018 45.833 14.17 4.83 36.24 4.37
222 223 4.469469 AGGGTTTTGAAAGATCTCCCAA 57.531 40.909 14.17 10.02 36.24 4.12
223 224 4.814967 AGGGTTTTGAAAGATCTCCCAAA 58.185 39.130 14.17 14.46 36.24 3.28
224 225 5.406163 AGGGTTTTGAAAGATCTCCCAAAT 58.594 37.500 17.70 5.89 36.24 2.32
225 226 5.481824 AGGGTTTTGAAAGATCTCCCAAATC 59.518 40.000 17.70 16.49 36.24 2.17
226 227 5.337571 GGGTTTTGAAAGATCTCCCAAATCC 60.338 44.000 24.47 24.47 37.51 3.01
227 228 5.245977 GGTTTTGAAAGATCTCCCAAATCCA 59.754 40.000 25.89 12.56 37.86 3.41
228 229 6.393171 GTTTTGAAAGATCTCCCAAATCCAG 58.607 40.000 17.70 0.00 0.00 3.86
229 230 4.934797 TGAAAGATCTCCCAAATCCAGT 57.065 40.909 0.00 0.00 0.00 4.00
230 231 4.848357 TGAAAGATCTCCCAAATCCAGTC 58.152 43.478 0.00 0.00 0.00 3.51
231 232 3.550437 AAGATCTCCCAAATCCAGTCG 57.450 47.619 0.00 0.00 0.00 4.18
232 233 1.139853 AGATCTCCCAAATCCAGTCGC 59.860 52.381 0.00 0.00 0.00 5.19
233 234 0.181350 ATCTCCCAAATCCAGTCGCC 59.819 55.000 0.00 0.00 0.00 5.54
234 235 0.909610 TCTCCCAAATCCAGTCGCCT 60.910 55.000 0.00 0.00 0.00 5.52
235 236 0.462759 CTCCCAAATCCAGTCGCCTC 60.463 60.000 0.00 0.00 0.00 4.70
236 237 1.452108 CCCAAATCCAGTCGCCTCC 60.452 63.158 0.00 0.00 0.00 4.30
237 238 1.815421 CCAAATCCAGTCGCCTCCG 60.815 63.158 0.00 0.00 0.00 4.63
238 239 2.125106 AAATCCAGTCGCCTCCGC 60.125 61.111 0.00 0.00 0.00 5.54
239 240 3.682292 AAATCCAGTCGCCTCCGCC 62.682 63.158 0.00 0.00 0.00 6.13
249 250 3.933722 CCTCCGCCGCCAGATCAT 61.934 66.667 0.00 0.00 0.00 2.45
250 251 2.356793 CTCCGCCGCCAGATCATC 60.357 66.667 0.00 0.00 0.00 2.92
251 252 4.284860 TCCGCCGCCAGATCATCG 62.285 66.667 0.00 0.00 0.00 3.84
254 255 4.916293 GCCGCCAGATCATCGCCA 62.916 66.667 0.00 0.00 0.00 5.69
255 256 2.969238 CCGCCAGATCATCGCCAC 60.969 66.667 0.00 0.00 0.00 5.01
256 257 2.202919 CGCCAGATCATCGCCACA 60.203 61.111 0.00 0.00 0.00 4.17
257 258 2.242572 CGCCAGATCATCGCCACAG 61.243 63.158 0.00 0.00 0.00 3.66
258 259 1.890979 GCCAGATCATCGCCACAGG 60.891 63.158 0.00 0.00 0.00 4.00
259 260 1.227764 CCAGATCATCGCCACAGGG 60.228 63.158 0.00 0.00 37.18 4.45
260 261 1.524002 CAGATCATCGCCACAGGGT 59.476 57.895 0.00 0.00 36.17 4.34
261 262 0.752658 CAGATCATCGCCACAGGGTA 59.247 55.000 0.00 0.00 36.17 3.69
262 263 1.345741 CAGATCATCGCCACAGGGTAT 59.654 52.381 0.00 0.00 36.17 2.73
263 264 1.620819 AGATCATCGCCACAGGGTATC 59.379 52.381 0.00 0.00 36.17 2.24
264 265 1.620819 GATCATCGCCACAGGGTATCT 59.379 52.381 0.00 0.00 36.17 1.98
265 266 1.040646 TCATCGCCACAGGGTATCTC 58.959 55.000 0.00 0.00 36.17 2.75
266 267 1.043816 CATCGCCACAGGGTATCTCT 58.956 55.000 0.00 0.00 36.17 3.10
267 268 1.043816 ATCGCCACAGGGTATCTCTG 58.956 55.000 0.00 0.00 38.16 3.35
268 269 1.227380 CGCCACAGGGTATCTCTGC 60.227 63.158 0.00 0.00 35.78 4.26
269 270 1.147153 GCCACAGGGTATCTCTGCC 59.853 63.158 0.00 0.00 35.78 4.85
270 271 1.443407 CCACAGGGTATCTCTGCCG 59.557 63.158 0.00 0.00 35.78 5.69
271 272 1.227380 CACAGGGTATCTCTGCCGC 60.227 63.158 0.00 0.00 35.78 6.53
272 273 2.423446 CAGGGTATCTCTGCCGCC 59.577 66.667 0.00 0.00 0.00 6.13
273 274 2.041922 AGGGTATCTCTGCCGCCA 60.042 61.111 0.00 0.00 0.00 5.69
274 275 2.109181 GGGTATCTCTGCCGCCAC 59.891 66.667 0.00 0.00 0.00 5.01
275 276 2.109181 GGTATCTCTGCCGCCACC 59.891 66.667 0.00 0.00 0.00 4.61
276 277 2.109181 GTATCTCTGCCGCCACCC 59.891 66.667 0.00 0.00 0.00 4.61
277 278 3.161450 TATCTCTGCCGCCACCCC 61.161 66.667 0.00 0.00 0.00 4.95
309 310 4.760047 GCCCTGGTCGTCACGCAT 62.760 66.667 0.00 0.00 0.00 4.73
310 311 2.509336 CCCTGGTCGTCACGCATC 60.509 66.667 0.00 0.00 0.00 3.91
311 312 2.880879 CCTGGTCGTCACGCATCG 60.881 66.667 0.00 0.00 0.00 3.84
312 313 2.178273 CTGGTCGTCACGCATCGA 59.822 61.111 0.00 0.00 0.00 3.59
317 318 1.426621 TCGTCACGCATCGACTACC 59.573 57.895 0.00 0.00 0.00 3.18
318 319 1.933041 CGTCACGCATCGACTACCG 60.933 63.158 0.00 0.00 40.25 4.02
319 320 2.101575 TCACGCATCGACTACCGC 59.898 61.111 0.00 0.00 38.37 5.68
320 321 2.954868 CACGCATCGACTACCGCC 60.955 66.667 0.00 0.00 38.37 6.13
321 322 3.138798 ACGCATCGACTACCGCCT 61.139 61.111 0.00 0.00 38.37 5.52
322 323 2.353607 CGCATCGACTACCGCCTC 60.354 66.667 0.00 0.00 38.37 4.70
323 324 2.027751 GCATCGACTACCGCCTCC 59.972 66.667 0.00 0.00 38.37 4.30
324 325 2.331805 CATCGACTACCGCCTCCG 59.668 66.667 0.00 0.00 38.37 4.63
325 326 2.124403 ATCGACTACCGCCTCCGT 60.124 61.111 0.00 0.00 38.37 4.69
326 327 1.751927 ATCGACTACCGCCTCCGTT 60.752 57.895 0.00 0.00 38.37 4.44
327 328 2.001361 ATCGACTACCGCCTCCGTTG 62.001 60.000 0.00 0.00 38.37 4.10
328 329 2.508663 GACTACCGCCTCCGTTGC 60.509 66.667 0.00 0.00 0.00 4.17
329 330 4.078516 ACTACCGCCTCCGTTGCC 62.079 66.667 0.00 0.00 0.00 4.52
330 331 4.832608 CTACCGCCTCCGTTGCCC 62.833 72.222 0.00 0.00 0.00 5.36
357 358 4.680237 CTGCGACCGCCTCCAACA 62.680 66.667 12.08 0.00 41.09 3.33
358 359 4.980805 TGCGACCGCCTCCAACAC 62.981 66.667 12.08 0.00 41.09 3.32
359 360 4.980805 GCGACCGCCTCCAACACA 62.981 66.667 2.55 0.00 34.56 3.72
360 361 3.041940 CGACCGCCTCCAACACAC 61.042 66.667 0.00 0.00 0.00 3.82
361 362 2.668550 GACCGCCTCCAACACACC 60.669 66.667 0.00 0.00 0.00 4.16
362 363 3.469863 GACCGCCTCCAACACACCA 62.470 63.158 0.00 0.00 0.00 4.17
363 364 2.978010 CCGCCTCCAACACACCAC 60.978 66.667 0.00 0.00 0.00 4.16
364 365 2.978010 CGCCTCCAACACACCACC 60.978 66.667 0.00 0.00 0.00 4.61
365 366 2.194597 GCCTCCAACACACCACCA 59.805 61.111 0.00 0.00 0.00 4.17
366 367 1.454847 GCCTCCAACACACCACCAA 60.455 57.895 0.00 0.00 0.00 3.67
367 368 1.734388 GCCTCCAACACACCACCAAC 61.734 60.000 0.00 0.00 0.00 3.77
368 369 1.106944 CCTCCAACACACCACCAACC 61.107 60.000 0.00 0.00 0.00 3.77
369 370 1.076632 TCCAACACACCACCAACCC 60.077 57.895 0.00 0.00 0.00 4.11
370 371 1.076339 CCAACACACCACCAACCCT 60.076 57.895 0.00 0.00 0.00 4.34
371 372 0.183971 CCAACACACCACCAACCCTA 59.816 55.000 0.00 0.00 0.00 3.53
372 373 1.604604 CAACACACCACCAACCCTAG 58.395 55.000 0.00 0.00 0.00 3.02
373 374 1.133915 CAACACACCACCAACCCTAGT 60.134 52.381 0.00 0.00 0.00 2.57
374 375 0.763035 ACACACCACCAACCCTAGTC 59.237 55.000 0.00 0.00 0.00 2.59
375 376 0.762418 CACACCACCAACCCTAGTCA 59.238 55.000 0.00 0.00 0.00 3.41
376 377 0.763035 ACACCACCAACCCTAGTCAC 59.237 55.000 0.00 0.00 0.00 3.67
377 378 0.036306 CACCACCAACCCTAGTCACC 59.964 60.000 0.00 0.00 0.00 4.02
378 379 0.104620 ACCACCAACCCTAGTCACCT 60.105 55.000 0.00 0.00 0.00 4.00
379 380 1.064825 CCACCAACCCTAGTCACCTT 58.935 55.000 0.00 0.00 0.00 3.50
380 381 1.003233 CCACCAACCCTAGTCACCTTC 59.997 57.143 0.00 0.00 0.00 3.46
381 382 0.974383 ACCAACCCTAGTCACCTTCG 59.026 55.000 0.00 0.00 0.00 3.79
382 383 0.249398 CCAACCCTAGTCACCTTCGG 59.751 60.000 0.00 0.00 0.00 4.30
383 384 0.391263 CAACCCTAGTCACCTTCGGC 60.391 60.000 0.00 0.00 0.00 5.54
384 385 0.834687 AACCCTAGTCACCTTCGGCA 60.835 55.000 0.00 0.00 0.00 5.69
385 386 1.258445 ACCCTAGTCACCTTCGGCAG 61.258 60.000 0.00 0.00 0.00 4.85
386 387 1.153549 CCTAGTCACCTTCGGCAGC 60.154 63.158 0.00 0.00 0.00 5.25
387 388 1.608717 CCTAGTCACCTTCGGCAGCT 61.609 60.000 0.00 0.00 0.00 4.24
388 389 0.459237 CTAGTCACCTTCGGCAGCTG 60.459 60.000 10.11 10.11 0.00 4.24
389 390 1.888436 TAGTCACCTTCGGCAGCTGG 61.888 60.000 17.12 0.00 0.00 4.85
390 391 4.020617 TCACCTTCGGCAGCTGGG 62.021 66.667 17.12 10.20 0.00 4.45
391 392 4.335647 CACCTTCGGCAGCTGGGT 62.336 66.667 17.12 10.92 0.00 4.51
392 393 4.021925 ACCTTCGGCAGCTGGGTC 62.022 66.667 17.12 0.00 0.00 4.46
393 394 4.785453 CCTTCGGCAGCTGGGTCC 62.785 72.222 17.12 7.35 0.00 4.46
436 437 4.722700 GCAGCGAGGGCAAAGGGA 62.723 66.667 0.00 0.00 43.41 4.20
437 438 2.437359 CAGCGAGGGCAAAGGGAG 60.437 66.667 0.00 0.00 43.41 4.30
438 439 2.930562 AGCGAGGGCAAAGGGAGT 60.931 61.111 0.00 0.00 43.41 3.85
439 440 2.436824 GCGAGGGCAAAGGGAGTC 60.437 66.667 0.00 0.00 39.62 3.36
440 441 2.125512 CGAGGGCAAAGGGAGTCG 60.126 66.667 0.00 0.00 0.00 4.18
441 442 2.269241 GAGGGCAAAGGGAGTCGG 59.731 66.667 0.00 0.00 0.00 4.79
442 443 3.330720 AGGGCAAAGGGAGTCGGG 61.331 66.667 0.00 0.00 0.00 5.14
443 444 4.426313 GGGCAAAGGGAGTCGGGG 62.426 72.222 0.00 0.00 0.00 5.73
444 445 3.327404 GGCAAAGGGAGTCGGGGA 61.327 66.667 0.00 0.00 0.00 4.81
445 446 2.269241 GCAAAGGGAGTCGGGGAG 59.731 66.667 0.00 0.00 0.00 4.30
446 447 2.990479 CAAAGGGAGTCGGGGAGG 59.010 66.667 0.00 0.00 0.00 4.30
447 448 2.285442 AAAGGGAGTCGGGGAGGG 60.285 66.667 0.00 0.00 0.00 4.30
448 449 3.945064 AAAGGGAGTCGGGGAGGGG 62.945 68.421 0.00 0.00 0.00 4.79
450 451 4.862823 GGGAGTCGGGGAGGGGAG 62.863 77.778 0.00 0.00 0.00 4.30
451 452 4.862823 GGAGTCGGGGAGGGGAGG 62.863 77.778 0.00 0.00 0.00 4.30
452 453 4.862823 GAGTCGGGGAGGGGAGGG 62.863 77.778 0.00 0.00 0.00 4.30
457 458 3.780275 GGGGAGGGGAGGGCTACT 61.780 72.222 0.00 0.00 0.00 2.57
458 459 2.446802 GGGAGGGGAGGGCTACTG 60.447 72.222 0.00 0.00 0.00 2.74
459 460 2.446802 GGAGGGGAGGGCTACTGG 60.447 72.222 0.00 0.00 0.00 4.00
460 461 3.164977 GAGGGGAGGGCTACTGGC 61.165 72.222 0.00 0.00 40.90 4.85
461 462 4.024984 AGGGGAGGGCTACTGGCA 62.025 66.667 0.00 0.00 44.01 4.92
462 463 3.483869 GGGGAGGGCTACTGGCAG 61.484 72.222 14.16 14.16 44.01 4.85
463 464 4.182433 GGGAGGGCTACTGGCAGC 62.182 72.222 15.89 0.61 44.01 5.25
464 465 4.537433 GGAGGGCTACTGGCAGCG 62.537 72.222 15.89 7.25 42.76 5.18
468 469 2.279784 GGCTACTGGCAGCGCTAG 60.280 66.667 23.09 6.91 42.76 3.42
469 470 2.279784 GCTACTGGCAGCGCTAGG 60.280 66.667 15.89 0.00 41.48 3.02
470 471 2.419198 CTACTGGCAGCGCTAGGG 59.581 66.667 15.89 0.00 41.48 3.53
471 472 2.363795 TACTGGCAGCGCTAGGGT 60.364 61.111 15.89 9.62 41.48 4.34
472 473 1.961180 CTACTGGCAGCGCTAGGGTT 61.961 60.000 15.89 0.00 41.48 4.11
473 474 1.550130 TACTGGCAGCGCTAGGGTTT 61.550 55.000 15.89 0.00 41.48 3.27
474 475 2.046314 TGGCAGCGCTAGGGTTTC 60.046 61.111 10.99 0.00 0.00 2.78
475 476 3.195698 GGCAGCGCTAGGGTTTCG 61.196 66.667 10.99 0.00 0.00 3.46
487 488 4.629523 GTTTCGCCCCCGGTGTCA 62.630 66.667 0.00 0.00 34.40 3.58
488 489 4.629523 TTTCGCCCCCGGTGTCAC 62.630 66.667 0.00 0.00 34.40 3.67
533 534 2.969827 GGGGGTGCACGAAAATGG 59.030 61.111 11.45 0.00 0.00 3.16
534 535 1.906333 GGGGGTGCACGAAAATGGT 60.906 57.895 11.45 0.00 0.00 3.55
535 536 1.468506 GGGGGTGCACGAAAATGGTT 61.469 55.000 11.45 0.00 0.00 3.67
536 537 0.391228 GGGGTGCACGAAAATGGTTT 59.609 50.000 11.45 0.00 0.00 3.27
537 538 1.604438 GGGGTGCACGAAAATGGTTTC 60.604 52.381 11.45 0.00 39.90 2.78
538 539 1.339929 GGGTGCACGAAAATGGTTTCT 59.660 47.619 11.45 0.00 40.94 2.52
539 540 2.223947 GGGTGCACGAAAATGGTTTCTT 60.224 45.455 11.45 0.00 40.94 2.52
540 541 3.004944 GGGTGCACGAAAATGGTTTCTTA 59.995 43.478 11.45 0.00 40.94 2.10
541 542 4.226761 GGTGCACGAAAATGGTTTCTTAG 58.773 43.478 11.45 0.00 40.94 2.18
542 543 4.261447 GGTGCACGAAAATGGTTTCTTAGT 60.261 41.667 11.45 0.00 40.94 2.24
543 544 5.278604 GTGCACGAAAATGGTTTCTTAGTT 58.721 37.500 0.00 0.00 40.94 2.24
544 545 6.432107 GTGCACGAAAATGGTTTCTTAGTTA 58.568 36.000 0.00 0.00 40.94 2.24
545 546 6.358822 GTGCACGAAAATGGTTTCTTAGTTAC 59.641 38.462 0.00 0.00 40.94 2.50
546 547 6.261381 TGCACGAAAATGGTTTCTTAGTTACT 59.739 34.615 0.00 0.00 40.94 2.24
547 548 7.441760 TGCACGAAAATGGTTTCTTAGTTACTA 59.558 33.333 0.00 0.00 40.94 1.82
548 549 7.743400 GCACGAAAATGGTTTCTTAGTTACTAC 59.257 37.037 0.00 0.00 40.94 2.73
549 550 8.985805 CACGAAAATGGTTTCTTAGTTACTACT 58.014 33.333 0.00 0.00 40.94 2.57
550 551 9.201127 ACGAAAATGGTTTCTTAGTTACTACTC 57.799 33.333 0.00 0.00 40.94 2.59
551 552 8.654215 CGAAAATGGTTTCTTAGTTACTACTCC 58.346 37.037 0.00 0.00 40.94 3.85
552 553 8.859236 AAAATGGTTTCTTAGTTACTACTCCC 57.141 34.615 0.00 0.00 35.78 4.30
553 554 7.809880 AATGGTTTCTTAGTTACTACTCCCT 57.190 36.000 0.00 0.00 35.78 4.20
554 555 6.847421 TGGTTTCTTAGTTACTACTCCCTC 57.153 41.667 0.00 0.00 35.78 4.30
555 556 5.718607 TGGTTTCTTAGTTACTACTCCCTCC 59.281 44.000 0.00 0.00 35.78 4.30
556 557 5.163571 GGTTTCTTAGTTACTACTCCCTCCG 60.164 48.000 0.00 0.00 35.78 4.63
557 558 4.851639 TCTTAGTTACTACTCCCTCCGT 57.148 45.455 0.00 0.00 35.78 4.69
558 559 5.184892 TCTTAGTTACTACTCCCTCCGTT 57.815 43.478 0.00 0.00 35.78 4.44
559 560 5.189180 TCTTAGTTACTACTCCCTCCGTTC 58.811 45.833 0.00 0.00 35.78 3.95
560 561 2.363683 AGTTACTACTCCCTCCGTTCG 58.636 52.381 0.00 0.00 0.00 3.95
561 562 1.403323 GTTACTACTCCCTCCGTTCGG 59.597 57.143 4.74 4.74 0.00 4.30
562 563 0.911769 TACTACTCCCTCCGTTCGGA 59.088 55.000 13.34 13.34 0.00 4.55
563 564 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
564 565 1.341778 ACTACTCCCTCCGTTCGGAAT 60.342 52.381 14.79 2.09 33.41 3.01
565 566 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
566 567 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
567 568 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
568 569 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
569 570 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
570 571 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
571 572 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
572 573 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
573 574 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
574 575 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
575 576 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
576 577 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
577 578 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
578 579 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
579 580 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
580 581 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
581 582 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
582 583 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
583 584 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
584 585 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
585 586 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
586 587 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
587 588 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
588 589 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
589 590 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
590 591 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
591 592 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
592 593 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
593 594 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
594 595 6.721668 TGTCTCGGAAATGGATGTATCTAGAT 59.278 38.462 10.73 10.73 0.00 1.98
595 596 7.032580 GTCTCGGAAATGGATGTATCTAGATG 58.967 42.308 15.79 0.00 0.00 2.90
596 597 6.721668 TCTCGGAAATGGATGTATCTAGATGT 59.278 38.462 15.79 1.25 0.00 3.06
597 598 7.233553 TCTCGGAAATGGATGTATCTAGATGTT 59.766 37.037 15.79 0.00 0.00 2.71
598 599 7.378966 TCGGAAATGGATGTATCTAGATGTTC 58.621 38.462 15.79 8.79 0.00 3.18
599 600 7.233553 TCGGAAATGGATGTATCTAGATGTTCT 59.766 37.037 15.79 0.00 0.00 3.01
600 601 8.523658 CGGAAATGGATGTATCTAGATGTTCTA 58.476 37.037 15.79 7.54 0.00 2.10
601 602 9.868277 GGAAATGGATGTATCTAGATGTTCTAG 57.132 37.037 15.79 5.38 45.99 2.43
616 617 8.824159 AGATGTTCTAGATACATTCATTTCCG 57.176 34.615 16.56 0.00 36.41 4.30
617 618 8.642432 AGATGTTCTAGATACATTCATTTCCGA 58.358 33.333 16.56 0.00 36.41 4.55
618 619 8.824159 ATGTTCTAGATACATTCATTTCCGAG 57.176 34.615 12.15 0.00 32.48 4.63
619 620 8.007405 TGTTCTAGATACATTCATTTCCGAGA 57.993 34.615 0.00 0.00 0.00 4.04
620 621 7.921214 TGTTCTAGATACATTCATTTCCGAGAC 59.079 37.037 0.00 0.00 0.00 3.36
621 622 7.582667 TCTAGATACATTCATTTCCGAGACA 57.417 36.000 0.00 0.00 0.00 3.41
622 623 8.007405 TCTAGATACATTCATTTCCGAGACAA 57.993 34.615 0.00 0.00 0.00 3.18
623 624 8.138074 TCTAGATACATTCATTTCCGAGACAAG 58.862 37.037 0.00 0.00 0.00 3.16
624 625 6.644347 AGATACATTCATTTCCGAGACAAGT 58.356 36.000 0.00 0.00 0.00 3.16
625 626 7.782049 AGATACATTCATTTCCGAGACAAGTA 58.218 34.615 0.00 0.00 0.00 2.24
626 627 8.258007 AGATACATTCATTTCCGAGACAAGTAA 58.742 33.333 0.00 0.00 0.00 2.24
627 628 8.964476 ATACATTCATTTCCGAGACAAGTAAT 57.036 30.769 0.00 0.00 0.00 1.89
628 629 7.687941 ACATTCATTTCCGAGACAAGTAATT 57.312 32.000 0.00 0.00 0.00 1.40
629 630 7.752695 ACATTCATTTCCGAGACAAGTAATTC 58.247 34.615 0.00 0.00 0.00 2.17
630 631 6.737254 TTCATTTCCGAGACAAGTAATTCC 57.263 37.500 0.00 0.00 0.00 3.01
631 632 4.868171 TCATTTCCGAGACAAGTAATTCCG 59.132 41.667 0.00 0.00 0.00 4.30
632 633 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
633 634 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
634 635 4.730949 TCCGAGACAAGTAATTCCGAAT 57.269 40.909 0.00 0.00 0.00 3.34
635 636 4.430007 TCCGAGACAAGTAATTCCGAATG 58.570 43.478 0.00 0.00 0.00 2.67
636 637 3.555956 CCGAGACAAGTAATTCCGAATGG 59.444 47.826 0.00 0.00 0.00 3.16
637 638 4.430007 CGAGACAAGTAATTCCGAATGGA 58.570 43.478 0.00 0.00 44.61 3.41
646 647 3.218974 TCCGAATGGAGGGAGTACC 57.781 57.895 0.00 0.00 40.17 3.34
712 713 1.668151 GGACACGAGCCCAGTTGAC 60.668 63.158 0.00 0.00 0.00 3.18
719 720 1.528129 GAGCCCAGTTGACTTTCCAG 58.472 55.000 0.00 0.00 0.00 3.86
947 960 0.813184 CGCTCGTTACTTCCCCACTA 59.187 55.000 0.00 0.00 0.00 2.74
1035 1048 0.602638 CCCTTGCCGCGATGCTTATA 60.603 55.000 8.23 0.00 0.00 0.98
1038 1051 1.457303 CTTGCCGCGATGCTTATACTC 59.543 52.381 8.23 0.00 0.00 2.59
1281 1294 2.928361 CTCGTGCACGTGTTGGTC 59.072 61.111 35.74 0.00 40.80 4.02
1296 1309 3.749088 TGTTGGTCCGTTGATGTAATGAC 59.251 43.478 0.00 0.00 0.00 3.06
1475 1491 9.923579 CACATTGGGTGCGTAAGAGAATACTCT 62.924 44.444 0.00 0.00 46.75 3.24
1495 1519 2.678336 CTCTCCGTCCCAAAATAACTGC 59.322 50.000 0.00 0.00 0.00 4.40
1505 1529 4.514816 CCCAAAATAACTGCCTTTGGTTTG 59.485 41.667 10.89 0.00 45.06 2.93
1547 1670 5.699458 AGTTGTACTAAATCAAAGACACCGG 59.301 40.000 0.00 0.00 0.00 5.28
1566 1689 1.914108 GGGGGAGTAGTTAGCAACCTT 59.086 52.381 0.00 0.00 0.00 3.50
1599 2213 7.833786 ACAACATATCCTTTCTACGAGTGTTA 58.166 34.615 0.00 0.00 0.00 2.41
1630 2244 4.377431 CGTGCCACTTATGTGTTCTTTCTC 60.377 45.833 7.86 0.00 42.34 2.87
1877 2491 8.499162 GGAATGTATGCTGAAGTATGTGTATTC 58.501 37.037 0.00 0.00 0.00 1.75
2255 2869 5.962433 ACTGCTGTCGTAACATAGTTGTAT 58.038 37.500 0.00 0.00 34.06 2.29
2296 2910 6.605471 TCAGTCTTTCCTCTTAACAGCATA 57.395 37.500 0.00 0.00 0.00 3.14
2304 2918 8.593945 TTTCCTCTTAACAGCATATCCATTTT 57.406 30.769 0.00 0.00 0.00 1.82
2333 2947 7.525688 ACATCATTTGTCACGTCTAATACAG 57.474 36.000 0.00 0.00 30.89 2.74
2485 3099 0.592637 CAGAATTGAACGGCAGTGCA 59.407 50.000 18.61 0.00 33.08 4.57
2657 3271 8.133024 TGGAACATGTTTAGGAATAATTGCTT 57.867 30.769 13.36 0.00 31.99 3.91
3056 3670 7.327214 AGCTTTGTGAACAAATTTCTAACCAA 58.673 30.769 8.94 0.00 43.92 3.67
3204 3818 2.432628 GCCGTTGAGAGTCCACGG 60.433 66.667 17.77 17.77 45.67 4.94
3243 3860 5.523552 GTGGCTTTGCTTAATTGTGAGTTTT 59.476 36.000 0.00 0.00 0.00 2.43
3263 3880 9.827411 GAGTTTTATTTAGTTGATCAAGACCAC 57.173 33.333 8.80 0.00 0.00 4.16
3267 3884 4.866508 TTAGTTGATCAAGACCACTCGT 57.133 40.909 8.80 0.00 0.00 4.18
3275 3892 5.828328 TGATCAAGACCACTCGTATCAGTAT 59.172 40.000 0.00 0.00 0.00 2.12
3554 4171 1.246649 TGTTCGGATTTGTGCATGCT 58.753 45.000 20.33 0.00 0.00 3.79
3623 4240 1.808945 CGCTTGAGGTTTTGCATCTCT 59.191 47.619 0.00 0.00 0.00 3.10
3718 4335 3.069289 CCTGGAAGCATTTTTCTTTGGC 58.931 45.455 0.00 0.00 0.00 4.52
3774 4393 6.769608 TTCTCTAATGTATATGCAGTTGCG 57.230 37.500 0.00 0.00 45.83 4.85
3953 4577 5.466728 CCGGTATTCATGTTCCTCTATGTTG 59.533 44.000 0.00 0.00 0.00 3.33
4096 4721 1.305201 TTTTTCAGGCAGTCCGACAC 58.695 50.000 0.40 0.00 37.47 3.67
4107 4732 4.873827 GGCAGTCCGACACAATCTTAAATA 59.126 41.667 0.40 0.00 0.00 1.40
4187 4813 0.813610 CCTTTGGTGCGCCGATATGA 60.814 55.000 12.58 0.00 37.67 2.15
4201 4827 6.403636 GCGCCGATATGATTTTCCTGATATTT 60.404 38.462 0.00 0.00 0.00 1.40
4422 5048 8.366401 TCTTTCTCTCTAGCATATTCCTCATTG 58.634 37.037 0.00 0.00 0.00 2.82
4458 5084 9.132521 CAGCAATTTAAAATGTGAGGACTAAAG 57.867 33.333 5.21 0.00 0.00 1.85
4545 5171 7.443879 TCACTCATGCTATTTGTGTTTCACTAA 59.556 33.333 1.72 0.96 35.11 2.24
4569 5195 8.995027 AATATTGAAATTGGCTAGGTATGTCA 57.005 30.769 0.00 0.00 0.00 3.58
4911 5551 1.165270 GAGCGGTGTATGCAGGTTTT 58.835 50.000 0.00 0.00 33.85 2.43
4959 5599 7.960738 GCACTTTTCGCTTACAATTTCATAGTA 59.039 33.333 0.00 0.00 0.00 1.82
5013 5653 2.605601 TCTCTGAGCCCTGCTGCA 60.606 61.111 0.88 0.88 39.88 4.41
5062 5702 6.055231 TGTTGTATTAAGTTATGCGGATGC 57.945 37.500 0.00 0.00 43.20 3.91
5073 5713 1.445926 GCGGATGCGCCAAAAATGT 60.446 52.632 22.09 0.00 35.94 2.71
5107 5747 2.079925 GCCTCGATGAGTTTTTGAGCT 58.920 47.619 0.00 0.00 0.00 4.09
5120 5760 6.291377 AGTTTTTGAGCTGAGAAGTACATGA 58.709 36.000 0.00 0.00 0.00 3.07
5138 5778 0.539438 GAACACCAATGCCTGTGGGA 60.539 55.000 2.83 0.00 40.75 4.37
5140 5780 0.827507 ACACCAATGCCTGTGGGAAC 60.828 55.000 2.83 0.00 40.75 3.62
5146 5789 0.682209 ATGCCTGTGGGAACATCTGC 60.682 55.000 0.00 0.00 46.14 4.26
5147 5790 1.001641 GCCTGTGGGAACATCTGCT 60.002 57.895 0.00 0.00 46.14 4.24
5148 5791 1.310933 GCCTGTGGGAACATCTGCTG 61.311 60.000 0.00 0.00 46.14 4.41
5153 5796 0.547471 TGGGAACATCTGCTGGAGGA 60.547 55.000 0.00 0.00 33.40 3.71
5215 5861 2.223144 CACCACATACACAGTTTCACCG 59.777 50.000 0.00 0.00 0.00 4.94
5250 5896 7.979537 TCATTACGCCCATGTATACAATAGATC 59.020 37.037 10.14 0.00 0.00 2.75
5251 5897 5.738619 ACGCCCATGTATACAATAGATCA 57.261 39.130 10.14 0.00 0.00 2.92
5268 5916 5.034554 AGATCACACTGTAATTGCAAACG 57.965 39.130 1.71 0.00 0.00 3.60
5315 5963 6.900194 AGCCATTGGTGTACTGTCTAAATAT 58.100 36.000 4.26 0.00 0.00 1.28
5411 6059 3.793129 GCGGGTCTTTATGCATGAACATG 60.793 47.826 10.16 10.04 41.60 3.21
5412 6060 3.627123 CGGGTCTTTATGCATGAACATGA 59.373 43.478 17.40 0.00 41.20 3.07
5417 6065 5.457799 GTCTTTATGCATGAACATGATGTGC 59.542 40.000 17.40 0.00 41.20 4.57
5427 6075 4.157105 TGAACATGATGTGCATTCTTCCAG 59.843 41.667 1.12 0.00 29.08 3.86
5462 6110 0.801251 GCATCGATATGGCTTGAGGC 59.199 55.000 0.00 0.00 41.50 4.70
5482 6130 5.305585 AGGCCAACGTATCCTATACAAATG 58.694 41.667 5.01 0.00 0.00 2.32
5487 6135 7.604927 GCCAACGTATCCTATACAAATGGATAA 59.395 37.037 13.01 0.00 42.38 1.75
5530 6302 5.239525 GGAAAACAAATCTGCTGTGAGTAGT 59.760 40.000 0.00 0.00 0.00 2.73
5611 6383 5.399013 AGTTGGAACTTTTTCAAGAACACG 58.601 37.500 0.00 0.00 35.21 4.49
5623 6395 7.402811 TTTCAAGAACACGTAACAGACTATG 57.597 36.000 0.00 0.00 0.00 2.23
5640 6412 9.561069 ACAGACTATGTTGAAGATTACACTTTT 57.439 29.630 0.00 0.00 39.96 2.27
5700 6472 3.769739 TTTTTAGAGGTCTGCAGAGCA 57.230 42.857 38.89 21.80 44.42 4.26
5701 6473 2.751166 TTTAGAGGTCTGCAGAGCAC 57.249 50.000 38.89 33.89 44.42 4.40
5702 6474 1.930251 TTAGAGGTCTGCAGAGCACT 58.070 50.000 36.31 36.31 44.42 4.40
5703 6475 1.930251 TAGAGGTCTGCAGAGCACTT 58.070 50.000 38.23 27.40 44.42 3.16
5704 6476 0.607620 AGAGGTCTGCAGAGCACTTC 59.392 55.000 38.89 29.27 44.42 3.01
5705 6477 0.607620 GAGGTCTGCAGAGCACTTCT 59.392 55.000 38.89 23.36 44.42 2.85
5706 6478 1.001860 GAGGTCTGCAGAGCACTTCTT 59.998 52.381 38.89 22.69 44.42 2.52
5707 6479 1.419387 AGGTCTGCAGAGCACTTCTTT 59.581 47.619 38.89 19.77 44.42 2.52
5713 6487 3.808728 TGCAGAGCACTTCTTTGTAAGT 58.191 40.909 0.00 0.00 40.33 2.24
5714 6488 4.199310 TGCAGAGCACTTCTTTGTAAGTT 58.801 39.130 0.00 0.00 37.61 2.66
5720 6494 4.335594 AGCACTTCTTTGTAAGTTCCACAC 59.664 41.667 0.00 0.00 37.61 3.82
5736 6510 1.591594 CACCTCAACAGACGCACGT 60.592 57.895 0.00 0.00 0.00 4.49
5759 6540 2.669434 GGAAACACTTTATACGCGCTGA 59.331 45.455 5.73 0.00 0.00 4.26
5761 6542 4.201783 GGAAACACTTTATACGCGCTGATT 60.202 41.667 5.73 0.00 0.00 2.57
5764 6545 5.824243 ACACTTTATACGCGCTGATTATC 57.176 39.130 5.73 0.00 0.00 1.75
5765 6546 5.529791 ACACTTTATACGCGCTGATTATCT 58.470 37.500 5.73 0.00 0.00 1.98
5774 6555 1.146637 GCTGATTATCTGCCGCTGAG 58.853 55.000 12.18 0.00 35.62 3.35
5775 6556 1.793258 CTGATTATCTGCCGCTGAGG 58.207 55.000 6.12 0.00 44.97 3.86
5845 6627 5.140454 ACTCCCAGGCCAAATCATTTATAC 58.860 41.667 5.01 0.00 0.00 1.47
5900 6682 6.131544 TCTTCTACTTTGAAACAAGGTTGC 57.868 37.500 4.76 0.00 0.00 4.17
5901 6683 4.545823 TCTACTTTGAAACAAGGTTGCG 57.454 40.909 4.76 0.00 0.00 4.85
5902 6684 4.193090 TCTACTTTGAAACAAGGTTGCGA 58.807 39.130 4.76 0.00 0.00 5.10
5903 6685 3.145212 ACTTTGAAACAAGGTTGCGAC 57.855 42.857 0.00 0.00 0.00 5.19
5904 6686 2.159296 ACTTTGAAACAAGGTTGCGACC 60.159 45.455 16.08 16.08 46.92 4.79
5935 6717 3.641434 ACTAGCCTAGGTGACGAGTAA 57.359 47.619 11.31 0.00 0.00 2.24
5936 6718 3.960571 ACTAGCCTAGGTGACGAGTAAA 58.039 45.455 11.31 0.00 0.00 2.01
6009 6822 1.873863 CGTCCTACTCACTGCGACA 59.126 57.895 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.620488 TGCTTGGATAATGGAAGTGGTC 58.380 45.455 0.00 0.00 0.00 4.02
11 12 3.737559 TGCTTGGATAATGGAAGTGGT 57.262 42.857 0.00 0.00 0.00 4.16
12 13 5.170748 GTTTTGCTTGGATAATGGAAGTGG 58.829 41.667 0.00 0.00 0.00 4.00
13 14 5.170748 GGTTTTGCTTGGATAATGGAAGTG 58.829 41.667 0.00 0.00 0.00 3.16
14 15 4.837860 TGGTTTTGCTTGGATAATGGAAGT 59.162 37.500 0.00 0.00 0.00 3.01
15 16 5.404466 TGGTTTTGCTTGGATAATGGAAG 57.596 39.130 0.00 0.00 0.00 3.46
16 17 4.222588 CCTGGTTTTGCTTGGATAATGGAA 59.777 41.667 0.00 0.00 0.00 3.53
17 18 3.768757 CCTGGTTTTGCTTGGATAATGGA 59.231 43.478 0.00 0.00 0.00 3.41
18 19 3.768757 TCCTGGTTTTGCTTGGATAATGG 59.231 43.478 0.00 0.00 0.00 3.16
19 20 5.170748 GTTCCTGGTTTTGCTTGGATAATG 58.829 41.667 0.00 0.00 0.00 1.90
20 21 4.837860 TGTTCCTGGTTTTGCTTGGATAAT 59.162 37.500 0.00 0.00 0.00 1.28
21 22 4.219115 TGTTCCTGGTTTTGCTTGGATAA 58.781 39.130 0.00 0.00 0.00 1.75
22 23 3.838565 TGTTCCTGGTTTTGCTTGGATA 58.161 40.909 0.00 0.00 0.00 2.59
23 24 2.676748 TGTTCCTGGTTTTGCTTGGAT 58.323 42.857 0.00 0.00 0.00 3.41
24 25 2.151502 TGTTCCTGGTTTTGCTTGGA 57.848 45.000 0.00 0.00 0.00 3.53
25 26 2.549926 GTTGTTCCTGGTTTTGCTTGG 58.450 47.619 0.00 0.00 0.00 3.61
26 27 2.159310 TCGTTGTTCCTGGTTTTGCTTG 60.159 45.455 0.00 0.00 0.00 4.01
27 28 2.096248 TCGTTGTTCCTGGTTTTGCTT 58.904 42.857 0.00 0.00 0.00 3.91
28 29 1.757682 TCGTTGTTCCTGGTTTTGCT 58.242 45.000 0.00 0.00 0.00 3.91
29 30 2.459934 CTTCGTTGTTCCTGGTTTTGC 58.540 47.619 0.00 0.00 0.00 3.68
30 31 2.685897 TCCTTCGTTGTTCCTGGTTTTG 59.314 45.455 0.00 0.00 0.00 2.44
31 32 2.949644 CTCCTTCGTTGTTCCTGGTTTT 59.050 45.455 0.00 0.00 0.00 2.43
32 33 2.171870 TCTCCTTCGTTGTTCCTGGTTT 59.828 45.455 0.00 0.00 0.00 3.27
33 34 1.766496 TCTCCTTCGTTGTTCCTGGTT 59.234 47.619 0.00 0.00 0.00 3.67
34 35 1.420430 TCTCCTTCGTTGTTCCTGGT 58.580 50.000 0.00 0.00 0.00 4.00
35 36 2.417719 CTTCTCCTTCGTTGTTCCTGG 58.582 52.381 0.00 0.00 0.00 4.45
36 37 2.417719 CCTTCTCCTTCGTTGTTCCTG 58.582 52.381 0.00 0.00 0.00 3.86
37 38 1.270893 GCCTTCTCCTTCGTTGTTCCT 60.271 52.381 0.00 0.00 0.00 3.36
38 39 1.157585 GCCTTCTCCTTCGTTGTTCC 58.842 55.000 0.00 0.00 0.00 3.62
39 40 1.878953 TGCCTTCTCCTTCGTTGTTC 58.121 50.000 0.00 0.00 0.00 3.18
40 41 1.947456 GTTGCCTTCTCCTTCGTTGTT 59.053 47.619 0.00 0.00 0.00 2.83
41 42 1.594331 GTTGCCTTCTCCTTCGTTGT 58.406 50.000 0.00 0.00 0.00 3.32
42 43 0.875059 GGTTGCCTTCTCCTTCGTTG 59.125 55.000 0.00 0.00 0.00 4.10
43 44 0.472471 TGGTTGCCTTCTCCTTCGTT 59.528 50.000 0.00 0.00 0.00 3.85
44 45 0.250338 GTGGTTGCCTTCTCCTTCGT 60.250 55.000 0.00 0.00 0.00 3.85
45 46 1.291877 CGTGGTTGCCTTCTCCTTCG 61.292 60.000 0.00 0.00 0.00 3.79
46 47 0.034896 TCGTGGTTGCCTTCTCCTTC 59.965 55.000 0.00 0.00 0.00 3.46
47 48 0.250338 GTCGTGGTTGCCTTCTCCTT 60.250 55.000 0.00 0.00 0.00 3.36
48 49 1.371558 GTCGTGGTTGCCTTCTCCT 59.628 57.895 0.00 0.00 0.00 3.69
49 50 2.027625 CGTCGTGGTTGCCTTCTCC 61.028 63.158 0.00 0.00 0.00 3.71
50 51 2.668280 GCGTCGTGGTTGCCTTCTC 61.668 63.158 0.00 0.00 0.00 2.87
51 52 2.665185 GCGTCGTGGTTGCCTTCT 60.665 61.111 0.00 0.00 0.00 2.85
52 53 3.723348 GGCGTCGTGGTTGCCTTC 61.723 66.667 0.00 0.00 45.40 3.46
57 58 3.345808 CAGGTGGCGTCGTGGTTG 61.346 66.667 0.00 0.00 0.00 3.77
58 59 3.857038 ACAGGTGGCGTCGTGGTT 61.857 61.111 0.00 0.00 0.00 3.67
59 60 4.602259 CACAGGTGGCGTCGTGGT 62.602 66.667 0.00 0.00 0.00 4.16
62 63 4.969196 CTGCACAGGTGGCGTCGT 62.969 66.667 1.10 0.00 0.00 4.34
63 64 4.662961 TCTGCACAGGTGGCGTCG 62.663 66.667 1.10 0.00 0.00 5.12
64 65 3.044305 GTCTGCACAGGTGGCGTC 61.044 66.667 1.10 0.00 0.00 5.19
65 66 3.860605 TGTCTGCACAGGTGGCGT 61.861 61.111 1.10 0.00 0.00 5.68
66 67 3.349006 GTGTCTGCACAGGTGGCG 61.349 66.667 1.10 0.00 44.64 5.69
67 68 3.349006 CGTGTCTGCACAGGTGGC 61.349 66.667 1.10 0.00 45.50 5.01
71 72 0.941463 GAGTGACGTGTCTGCACAGG 60.941 60.000 0.00 0.00 45.50 4.00
72 73 1.271446 CGAGTGACGTGTCTGCACAG 61.271 60.000 0.00 0.00 45.50 3.66
73 74 1.299089 CGAGTGACGTGTCTGCACA 60.299 57.895 0.00 0.00 45.50 4.57
74 75 3.527186 CGAGTGACGTGTCTGCAC 58.473 61.111 0.00 0.00 41.97 4.57
99 100 4.521062 ATGAGCCGGAGCAGCGAC 62.521 66.667 5.05 0.00 43.56 5.19
100 101 4.519437 CATGAGCCGGAGCAGCGA 62.519 66.667 5.05 0.00 43.56 4.93
111 112 3.224324 CCATGGCCTGGCATGAGC 61.224 66.667 28.91 2.67 38.47 4.26
128 129 0.955428 TTTGTCGTGGCTCTCATGGC 60.955 55.000 0.00 0.00 37.50 4.40
129 130 0.798776 GTTTGTCGTGGCTCTCATGG 59.201 55.000 0.00 0.00 33.31 3.66
130 131 1.511850 TGTTTGTCGTGGCTCTCATG 58.488 50.000 0.00 0.00 0.00 3.07
131 132 1.873591 GTTGTTTGTCGTGGCTCTCAT 59.126 47.619 0.00 0.00 0.00 2.90
132 133 1.295792 GTTGTTTGTCGTGGCTCTCA 58.704 50.000 0.00 0.00 0.00 3.27
133 134 0.232303 CGTTGTTTGTCGTGGCTCTC 59.768 55.000 0.00 0.00 0.00 3.20
134 135 1.772063 GCGTTGTTTGTCGTGGCTCT 61.772 55.000 0.00 0.00 0.00 4.09
135 136 1.368850 GCGTTGTTTGTCGTGGCTC 60.369 57.895 0.00 0.00 0.00 4.70
136 137 2.713154 GCGTTGTTTGTCGTGGCT 59.287 55.556 0.00 0.00 0.00 4.75
137 138 2.353030 GGCGTTGTTTGTCGTGGC 60.353 61.111 0.00 0.00 0.00 5.01
138 139 1.278637 GAGGCGTTGTTTGTCGTGG 59.721 57.895 0.00 0.00 0.00 4.94
139 140 1.083657 CGAGGCGTTGTTTGTCGTG 60.084 57.895 0.00 0.00 0.00 4.35
140 141 0.599204 ATCGAGGCGTTGTTTGTCGT 60.599 50.000 0.00 0.00 32.49 4.34
141 142 0.093026 GATCGAGGCGTTGTTTGTCG 59.907 55.000 0.00 0.00 0.00 4.35
142 143 0.442699 GGATCGAGGCGTTGTTTGTC 59.557 55.000 0.00 0.00 0.00 3.18
143 144 0.953960 GGGATCGAGGCGTTGTTTGT 60.954 55.000 0.00 0.00 0.00 2.83
144 145 1.644786 GGGGATCGAGGCGTTGTTTG 61.645 60.000 0.00 0.00 0.00 2.93
145 146 1.376812 GGGGATCGAGGCGTTGTTT 60.377 57.895 0.00 0.00 0.00 2.83
146 147 2.267961 GGGGATCGAGGCGTTGTT 59.732 61.111 0.00 0.00 0.00 2.83
147 148 3.782443 GGGGGATCGAGGCGTTGT 61.782 66.667 0.00 0.00 0.00 3.32
148 149 4.891727 CGGGGGATCGAGGCGTTG 62.892 72.222 0.00 0.00 0.00 4.10
166 167 3.647649 GATGCCCTTTGGTTGCCGC 62.648 63.158 0.00 0.00 0.00 6.53
167 168 2.573340 GATGCCCTTTGGTTGCCG 59.427 61.111 0.00 0.00 0.00 5.69
168 169 1.322538 ATCGATGCCCTTTGGTTGCC 61.323 55.000 0.00 0.00 0.00 4.52
169 170 0.179129 CATCGATGCCCTTTGGTTGC 60.179 55.000 13.37 0.00 0.00 4.17
170 171 1.402968 CTCATCGATGCCCTTTGGTTG 59.597 52.381 20.81 0.00 0.00 3.77
171 172 1.683011 CCTCATCGATGCCCTTTGGTT 60.683 52.381 20.81 0.00 0.00 3.67
172 173 0.107017 CCTCATCGATGCCCTTTGGT 60.107 55.000 20.81 0.00 0.00 3.67
173 174 1.450531 GCCTCATCGATGCCCTTTGG 61.451 60.000 20.81 14.53 0.00 3.28
174 175 1.450531 GGCCTCATCGATGCCCTTTG 61.451 60.000 20.81 6.00 37.38 2.77
175 176 1.152881 GGCCTCATCGATGCCCTTT 60.153 57.895 20.81 0.00 37.38 3.11
176 177 1.713005 ATGGCCTCATCGATGCCCTT 61.713 55.000 20.81 14.34 41.55 3.95
177 178 2.152058 ATGGCCTCATCGATGCCCT 61.152 57.895 20.81 8.76 41.55 5.19
178 179 1.970114 CATGGCCTCATCGATGCCC 60.970 63.158 20.81 18.77 41.55 5.36
179 180 1.071987 TCATGGCCTCATCGATGCC 59.928 57.895 20.81 18.34 42.36 4.40
180 181 1.233285 GGTCATGGCCTCATCGATGC 61.233 60.000 20.81 9.11 0.00 3.91
181 182 0.395686 AGGTCATGGCCTCATCGATG 59.604 55.000 14.79 19.61 32.39 3.84
182 183 1.898472 CTAGGTCATGGCCTCATCGAT 59.102 52.381 25.34 0.00 39.94 3.59
183 184 1.332195 CTAGGTCATGGCCTCATCGA 58.668 55.000 25.34 3.39 39.94 3.59
184 185 0.319728 CCTAGGTCATGGCCTCATCG 59.680 60.000 25.34 9.91 39.94 3.84
185 186 0.689623 CCCTAGGTCATGGCCTCATC 59.310 60.000 25.34 0.00 39.94 2.92
186 187 0.029681 ACCCTAGGTCATGGCCTCAT 60.030 55.000 25.34 0.93 39.94 2.90
187 188 0.253160 AACCCTAGGTCATGGCCTCA 60.253 55.000 25.34 8.72 39.94 3.86
188 189 0.919710 AAACCCTAGGTCATGGCCTC 59.080 55.000 25.34 0.00 39.94 4.70
189 190 1.005924 CAAAACCCTAGGTCATGGCCT 59.994 52.381 24.92 24.92 42.43 5.19
190 191 1.005450 TCAAAACCCTAGGTCATGGCC 59.995 52.381 8.79 8.79 33.12 5.36
191 192 2.507407 TCAAAACCCTAGGTCATGGC 57.493 50.000 8.29 0.00 33.12 4.40
192 193 4.662278 TCTTTCAAAACCCTAGGTCATGG 58.338 43.478 8.29 0.00 33.12 3.66
193 194 6.183347 AGATCTTTCAAAACCCTAGGTCATG 58.817 40.000 8.29 1.48 33.12 3.07
194 195 6.394345 AGATCTTTCAAAACCCTAGGTCAT 57.606 37.500 8.29 0.00 33.12 3.06
195 196 5.280521 GGAGATCTTTCAAAACCCTAGGTCA 60.281 44.000 8.29 0.00 33.12 4.02
196 197 5.186942 GGAGATCTTTCAAAACCCTAGGTC 58.813 45.833 8.29 0.00 33.12 3.85
197 198 4.018324 GGGAGATCTTTCAAAACCCTAGGT 60.018 45.833 8.29 0.00 37.65 3.08
198 199 4.018415 TGGGAGATCTTTCAAAACCCTAGG 60.018 45.833 13.11 0.06 37.06 3.02
199 200 5.179452 TGGGAGATCTTTCAAAACCCTAG 57.821 43.478 13.11 0.00 37.06 3.02
200 201 5.592587 TTGGGAGATCTTTCAAAACCCTA 57.407 39.130 13.11 4.62 37.06 3.53
201 202 4.469469 TTGGGAGATCTTTCAAAACCCT 57.531 40.909 13.11 0.00 37.06 4.34
202 203 5.337571 GGATTTGGGAGATCTTTCAAAACCC 60.338 44.000 24.41 21.41 36.61 4.11
203 204 5.245977 TGGATTTGGGAGATCTTTCAAAACC 59.754 40.000 26.16 26.16 40.29 3.27
204 205 6.015095 ACTGGATTTGGGAGATCTTTCAAAAC 60.015 38.462 20.59 18.40 33.62 2.43
205 206 6.077322 ACTGGATTTGGGAGATCTTTCAAAA 58.923 36.000 20.59 12.61 33.62 2.44
206 207 5.644188 ACTGGATTTGGGAGATCTTTCAAA 58.356 37.500 19.63 19.63 34.28 2.69
207 208 5.256474 GACTGGATTTGGGAGATCTTTCAA 58.744 41.667 0.00 2.06 0.00 2.69
208 209 4.623886 CGACTGGATTTGGGAGATCTTTCA 60.624 45.833 0.00 0.00 0.00 2.69
209 210 3.873952 CGACTGGATTTGGGAGATCTTTC 59.126 47.826 0.00 0.00 0.00 2.62
210 211 3.878778 CGACTGGATTTGGGAGATCTTT 58.121 45.455 0.00 0.00 0.00 2.52
211 212 2.420687 GCGACTGGATTTGGGAGATCTT 60.421 50.000 0.00 0.00 0.00 2.40
212 213 1.139853 GCGACTGGATTTGGGAGATCT 59.860 52.381 0.00 0.00 0.00 2.75
213 214 1.587547 GCGACTGGATTTGGGAGATC 58.412 55.000 0.00 0.00 0.00 2.75
214 215 0.181350 GGCGACTGGATTTGGGAGAT 59.819 55.000 0.00 0.00 0.00 2.75
215 216 0.909610 AGGCGACTGGATTTGGGAGA 60.910 55.000 0.00 0.00 41.13 3.71
216 217 0.462759 GAGGCGACTGGATTTGGGAG 60.463 60.000 0.00 0.00 44.43 4.30
217 218 1.602237 GAGGCGACTGGATTTGGGA 59.398 57.895 0.00 0.00 44.43 4.37
218 219 1.452108 GGAGGCGACTGGATTTGGG 60.452 63.158 0.00 0.00 44.43 4.12
219 220 1.815421 CGGAGGCGACTGGATTTGG 60.815 63.158 0.00 0.00 44.43 3.28
220 221 2.464459 GCGGAGGCGACTGGATTTG 61.464 63.158 0.00 0.00 44.43 2.32
221 222 2.125106 GCGGAGGCGACTGGATTT 60.125 61.111 0.00 0.00 44.43 2.17
232 233 3.873026 GATGATCTGGCGGCGGAGG 62.873 68.421 25.66 5.72 0.00 4.30
233 234 2.356793 GATGATCTGGCGGCGGAG 60.357 66.667 25.66 8.38 0.00 4.63
234 235 4.284860 CGATGATCTGGCGGCGGA 62.285 66.667 23.98 23.98 0.00 5.54
238 239 2.969238 GTGGCGATGATCTGGCGG 60.969 66.667 0.00 0.00 0.00 6.13
239 240 2.202919 TGTGGCGATGATCTGGCG 60.203 61.111 0.00 0.00 0.00 5.69
240 241 1.890979 CCTGTGGCGATGATCTGGC 60.891 63.158 0.00 4.45 0.00 4.85
241 242 1.227764 CCCTGTGGCGATGATCTGG 60.228 63.158 0.00 0.00 0.00 3.86
242 243 0.752658 TACCCTGTGGCGATGATCTG 59.247 55.000 0.00 0.00 33.59 2.90
243 244 1.620819 GATACCCTGTGGCGATGATCT 59.379 52.381 0.00 0.00 33.59 2.75
244 245 1.620819 AGATACCCTGTGGCGATGATC 59.379 52.381 0.00 0.00 33.59 2.92
245 246 1.620819 GAGATACCCTGTGGCGATGAT 59.379 52.381 0.00 0.00 33.59 2.45
246 247 1.040646 GAGATACCCTGTGGCGATGA 58.959 55.000 0.00 0.00 33.59 2.92
247 248 1.043816 AGAGATACCCTGTGGCGATG 58.956 55.000 0.00 0.00 33.59 3.84
248 249 1.043816 CAGAGATACCCTGTGGCGAT 58.956 55.000 0.00 0.00 32.91 4.58
249 250 1.676678 GCAGAGATACCCTGTGGCGA 61.677 60.000 0.00 0.00 36.72 5.54
250 251 1.227380 GCAGAGATACCCTGTGGCG 60.227 63.158 0.00 0.00 36.72 5.69
251 252 4.865865 GCAGAGATACCCTGTGGC 57.134 61.111 0.00 0.00 36.72 5.01
252 253 1.443407 CGGCAGAGATACCCTGTGG 59.557 63.158 0.00 0.00 36.72 4.17
253 254 1.227380 GCGGCAGAGATACCCTGTG 60.227 63.158 0.00 0.00 39.03 3.66
254 255 2.435693 GGCGGCAGAGATACCCTGT 61.436 63.158 3.07 0.00 34.29 4.00
255 256 2.423446 GGCGGCAGAGATACCCTG 59.577 66.667 3.07 0.00 34.88 4.45
256 257 2.041922 TGGCGGCAGAGATACCCT 60.042 61.111 7.97 0.00 0.00 4.34
257 258 2.109181 GTGGCGGCAGAGATACCC 59.891 66.667 13.91 0.00 0.00 3.69
258 259 2.109181 GGTGGCGGCAGAGATACC 59.891 66.667 13.91 4.85 0.00 2.73
259 260 2.109181 GGGTGGCGGCAGAGATAC 59.891 66.667 13.91 0.00 0.00 2.24
260 261 3.161450 GGGGTGGCGGCAGAGATA 61.161 66.667 13.91 0.00 0.00 1.98
292 293 4.760047 ATGCGTGACGACCAGGGC 62.760 66.667 10.10 0.00 0.00 5.19
293 294 2.509336 GATGCGTGACGACCAGGG 60.509 66.667 10.10 0.00 0.00 4.45
294 295 2.880879 CGATGCGTGACGACCAGG 60.881 66.667 10.10 0.00 0.00 4.45
295 296 2.178273 TCGATGCGTGACGACCAG 59.822 61.111 10.10 0.00 33.62 4.00
299 300 1.426621 GGTAGTCGATGCGTGACGA 59.573 57.895 10.10 0.00 41.24 4.20
300 301 1.933041 CGGTAGTCGATGCGTGACG 60.933 63.158 0.00 0.00 41.24 4.35
301 302 2.222217 GCGGTAGTCGATGCGTGAC 61.222 63.158 0.00 0.00 42.43 3.67
302 303 2.101575 GCGGTAGTCGATGCGTGA 59.898 61.111 0.00 0.00 42.43 4.35
303 304 2.954868 GGCGGTAGTCGATGCGTG 60.955 66.667 0.00 0.00 42.43 5.34
304 305 3.122250 GAGGCGGTAGTCGATGCGT 62.122 63.158 0.00 0.00 42.43 5.24
305 306 2.353607 GAGGCGGTAGTCGATGCG 60.354 66.667 0.00 0.00 42.43 4.73
306 307 2.027751 GGAGGCGGTAGTCGATGC 59.972 66.667 0.00 0.00 42.43 3.91
307 308 2.001361 AACGGAGGCGGTAGTCGATG 62.001 60.000 0.00 0.00 42.43 3.84
308 309 1.751927 AACGGAGGCGGTAGTCGAT 60.752 57.895 0.00 0.00 42.43 3.59
309 310 2.360350 AACGGAGGCGGTAGTCGA 60.360 61.111 0.00 0.00 42.43 4.20
310 311 2.202570 CAACGGAGGCGGTAGTCG 60.203 66.667 0.00 0.00 42.76 4.18
311 312 2.508663 GCAACGGAGGCGGTAGTC 60.509 66.667 0.00 0.00 0.00 2.59
312 313 4.078516 GGCAACGGAGGCGGTAGT 62.079 66.667 0.00 0.00 0.00 2.73
313 314 4.832608 GGGCAACGGAGGCGGTAG 62.833 72.222 0.00 0.00 37.60 3.18
340 341 4.680237 TGTTGGAGGCGGTCGCAG 62.680 66.667 17.21 0.00 44.11 5.18
341 342 4.980805 GTGTTGGAGGCGGTCGCA 62.981 66.667 17.21 0.00 44.11 5.10
342 343 4.980805 TGTGTTGGAGGCGGTCGC 62.981 66.667 6.83 6.83 41.06 5.19
343 344 3.041940 GTGTGTTGGAGGCGGTCG 61.042 66.667 0.00 0.00 0.00 4.79
344 345 2.668550 GGTGTGTTGGAGGCGGTC 60.669 66.667 0.00 0.00 0.00 4.79
345 346 3.484806 TGGTGTGTTGGAGGCGGT 61.485 61.111 0.00 0.00 0.00 5.68
346 347 2.978010 GTGGTGTGTTGGAGGCGG 60.978 66.667 0.00 0.00 0.00 6.13
347 348 2.978010 GGTGGTGTGTTGGAGGCG 60.978 66.667 0.00 0.00 0.00 5.52
348 349 1.454847 TTGGTGGTGTGTTGGAGGC 60.455 57.895 0.00 0.00 0.00 4.70
349 350 1.106944 GGTTGGTGGTGTGTTGGAGG 61.107 60.000 0.00 0.00 0.00 4.30
350 351 1.106944 GGGTTGGTGGTGTGTTGGAG 61.107 60.000 0.00 0.00 0.00 3.86
351 352 1.076632 GGGTTGGTGGTGTGTTGGA 60.077 57.895 0.00 0.00 0.00 3.53
352 353 0.183971 TAGGGTTGGTGGTGTGTTGG 59.816 55.000 0.00 0.00 0.00 3.77
353 354 1.133915 ACTAGGGTTGGTGGTGTGTTG 60.134 52.381 0.00 0.00 0.00 3.33
354 355 1.142262 GACTAGGGTTGGTGGTGTGTT 59.858 52.381 0.00 0.00 0.00 3.32
355 356 0.763035 GACTAGGGTTGGTGGTGTGT 59.237 55.000 0.00 0.00 0.00 3.72
356 357 0.762418 TGACTAGGGTTGGTGGTGTG 59.238 55.000 0.00 0.00 0.00 3.82
357 358 0.763035 GTGACTAGGGTTGGTGGTGT 59.237 55.000 0.00 0.00 0.00 4.16
358 359 0.036306 GGTGACTAGGGTTGGTGGTG 59.964 60.000 0.00 0.00 0.00 4.17
359 360 0.104620 AGGTGACTAGGGTTGGTGGT 60.105 55.000 0.00 0.00 40.61 4.16
360 361 1.003233 GAAGGTGACTAGGGTTGGTGG 59.997 57.143 0.00 0.00 42.68 4.61
361 362 1.337823 CGAAGGTGACTAGGGTTGGTG 60.338 57.143 0.00 0.00 42.68 4.17
362 363 0.974383 CGAAGGTGACTAGGGTTGGT 59.026 55.000 0.00 0.00 42.68 3.67
363 364 3.834732 CGAAGGTGACTAGGGTTGG 57.165 57.895 0.00 0.00 42.68 3.77
419 420 4.722700 TCCCTTTGCCCTCGCTGC 62.723 66.667 0.00 0.00 35.36 5.25
420 421 2.437359 CTCCCTTTGCCCTCGCTG 60.437 66.667 0.00 0.00 35.36 5.18
421 422 2.930562 ACTCCCTTTGCCCTCGCT 60.931 61.111 0.00 0.00 35.36 4.93
422 423 2.436824 GACTCCCTTTGCCCTCGC 60.437 66.667 0.00 0.00 0.00 5.03
423 424 2.125512 CGACTCCCTTTGCCCTCG 60.126 66.667 0.00 0.00 0.00 4.63
424 425 2.269241 CCGACTCCCTTTGCCCTC 59.731 66.667 0.00 0.00 0.00 4.30
425 426 3.330720 CCCGACTCCCTTTGCCCT 61.331 66.667 0.00 0.00 0.00 5.19
426 427 4.426313 CCCCGACTCCCTTTGCCC 62.426 72.222 0.00 0.00 0.00 5.36
427 428 3.327404 TCCCCGACTCCCTTTGCC 61.327 66.667 0.00 0.00 0.00 4.52
428 429 2.269241 CTCCCCGACTCCCTTTGC 59.731 66.667 0.00 0.00 0.00 3.68
429 430 2.670148 CCCTCCCCGACTCCCTTTG 61.670 68.421 0.00 0.00 0.00 2.77
430 431 2.285442 CCCTCCCCGACTCCCTTT 60.285 66.667 0.00 0.00 0.00 3.11
431 432 4.416601 CCCCTCCCCGACTCCCTT 62.417 72.222 0.00 0.00 0.00 3.95
433 434 4.862823 CTCCCCTCCCCGACTCCC 62.863 77.778 0.00 0.00 0.00 4.30
434 435 4.862823 CCTCCCCTCCCCGACTCC 62.863 77.778 0.00 0.00 0.00 3.85
435 436 4.862823 CCCTCCCCTCCCCGACTC 62.863 77.778 0.00 0.00 0.00 3.36
440 441 3.780275 AGTAGCCCTCCCCTCCCC 61.780 72.222 0.00 0.00 0.00 4.81
441 442 2.446802 CAGTAGCCCTCCCCTCCC 60.447 72.222 0.00 0.00 0.00 4.30
442 443 2.446802 CCAGTAGCCCTCCCCTCC 60.447 72.222 0.00 0.00 0.00 4.30
443 444 3.164977 GCCAGTAGCCCTCCCCTC 61.165 72.222 0.00 0.00 34.35 4.30
444 445 4.024984 TGCCAGTAGCCCTCCCCT 62.025 66.667 0.00 0.00 42.71 4.79
445 446 3.483869 CTGCCAGTAGCCCTCCCC 61.484 72.222 0.00 0.00 42.71 4.81
446 447 4.182433 GCTGCCAGTAGCCCTCCC 62.182 72.222 0.00 0.00 42.71 4.30
447 448 4.537433 CGCTGCCAGTAGCCCTCC 62.537 72.222 1.99 0.00 42.71 4.30
450 451 3.798954 CTAGCGCTGCCAGTAGCCC 62.799 68.421 22.90 0.00 42.71 5.19
451 452 2.279784 CTAGCGCTGCCAGTAGCC 60.280 66.667 22.90 0.00 42.71 3.93
452 453 2.279784 CCTAGCGCTGCCAGTAGC 60.280 66.667 22.90 6.25 44.14 3.58
453 454 1.961180 AACCCTAGCGCTGCCAGTAG 61.961 60.000 22.90 8.05 0.00 2.57
454 455 1.550130 AAACCCTAGCGCTGCCAGTA 61.550 55.000 22.90 0.00 0.00 2.74
455 456 2.804828 GAAACCCTAGCGCTGCCAGT 62.805 60.000 22.90 9.36 0.00 4.00
456 457 2.045926 AAACCCTAGCGCTGCCAG 60.046 61.111 22.90 9.77 0.00 4.85
457 458 2.046314 GAAACCCTAGCGCTGCCA 60.046 61.111 22.90 0.00 0.00 4.92
458 459 3.195698 CGAAACCCTAGCGCTGCC 61.196 66.667 22.90 0.00 0.00 4.85
459 460 3.865830 GCGAAACCCTAGCGCTGC 61.866 66.667 22.90 8.45 46.53 5.25
470 471 4.629523 TGACACCGGGGGCGAAAC 62.630 66.667 9.50 0.00 0.00 2.78
471 472 4.629523 GTGACACCGGGGGCGAAA 62.630 66.667 9.50 0.00 0.00 3.46
516 517 1.468506 AACCATTTTCGTGCACCCCC 61.469 55.000 12.15 0.00 0.00 5.40
517 518 0.391228 AAACCATTTTCGTGCACCCC 59.609 50.000 12.15 0.00 0.00 4.95
518 519 1.339929 AGAAACCATTTTCGTGCACCC 59.660 47.619 12.15 0.00 45.15 4.61
519 520 2.793278 AGAAACCATTTTCGTGCACC 57.207 45.000 12.15 0.00 45.15 5.01
520 521 4.855531 ACTAAGAAACCATTTTCGTGCAC 58.144 39.130 6.82 6.82 45.15 4.57
521 522 5.508200 AACTAAGAAACCATTTTCGTGCA 57.492 34.783 0.00 0.00 45.15 4.57
522 523 6.665465 AGTAACTAAGAAACCATTTTCGTGC 58.335 36.000 0.00 0.00 45.15 5.34
523 524 8.985805 AGTAGTAACTAAGAAACCATTTTCGTG 58.014 33.333 0.00 0.00 39.28 4.35
524 525 9.201127 GAGTAGTAACTAAGAAACCATTTTCGT 57.799 33.333 0.00 0.00 40.25 3.85
525 526 8.654215 GGAGTAGTAACTAAGAAACCATTTTCG 58.346 37.037 0.00 0.00 40.25 3.46
526 527 8.944029 GGGAGTAGTAACTAAGAAACCATTTTC 58.056 37.037 0.00 0.00 37.78 2.29
527 528 8.666821 AGGGAGTAGTAACTAAGAAACCATTTT 58.333 33.333 0.00 0.00 35.56 1.82
528 529 8.215954 AGGGAGTAGTAACTAAGAAACCATTT 57.784 34.615 0.00 0.00 35.56 2.32
529 530 7.092979 GGAGGGAGTAGTAACTAAGAAACCATT 60.093 40.741 0.00 0.00 35.56 3.16
530 531 6.383436 GGAGGGAGTAGTAACTAAGAAACCAT 59.617 42.308 0.00 0.00 35.56 3.55
531 532 5.718607 GGAGGGAGTAGTAACTAAGAAACCA 59.281 44.000 0.00 0.00 35.56 3.67
532 533 5.163571 CGGAGGGAGTAGTAACTAAGAAACC 60.164 48.000 0.00 0.00 35.56 3.27
533 534 5.417266 ACGGAGGGAGTAGTAACTAAGAAAC 59.583 44.000 0.00 0.00 35.56 2.78
534 535 5.574188 ACGGAGGGAGTAGTAACTAAGAAA 58.426 41.667 0.00 0.00 35.56 2.52
535 536 5.184892 ACGGAGGGAGTAGTAACTAAGAA 57.815 43.478 0.00 0.00 35.56 2.52
536 537 4.851639 ACGGAGGGAGTAGTAACTAAGA 57.148 45.455 0.00 0.00 35.56 2.10
537 538 4.034975 CGAACGGAGGGAGTAGTAACTAAG 59.965 50.000 0.00 0.00 35.56 2.18
538 539 3.941483 CGAACGGAGGGAGTAGTAACTAA 59.059 47.826 0.00 0.00 35.56 2.24
539 540 3.535561 CGAACGGAGGGAGTAGTAACTA 58.464 50.000 0.00 0.00 35.56 2.24
540 541 2.363683 CGAACGGAGGGAGTAGTAACT 58.636 52.381 0.00 0.00 39.21 2.24
541 542 1.403323 CCGAACGGAGGGAGTAGTAAC 59.597 57.143 7.53 0.00 37.50 2.50
542 543 1.281867 TCCGAACGGAGGGAGTAGTAA 59.718 52.381 12.04 0.00 39.76 2.24
543 544 0.911769 TCCGAACGGAGGGAGTAGTA 59.088 55.000 12.04 0.00 39.76 1.82
544 545 0.038744 TTCCGAACGGAGGGAGTAGT 59.961 55.000 15.34 0.00 46.06 2.73
545 546 1.400737 ATTCCGAACGGAGGGAGTAG 58.599 55.000 15.34 0.00 46.06 2.57
546 547 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
547 548 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
548 549 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
549 550 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
550 551 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
551 552 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
552 553 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
553 554 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
554 555 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
555 556 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
556 557 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
557 558 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
558 559 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
559 560 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
560 561 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
561 562 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
562 563 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
563 564 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
564 565 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
565 566 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
566 567 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
567 568 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
568 569 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
569 570 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
570 571 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
571 572 6.721668 ACATCTAGATACATCCATTTCCGAGA 59.278 38.462 4.54 0.00 0.00 4.04
572 573 6.929625 ACATCTAGATACATCCATTTCCGAG 58.070 40.000 4.54 0.00 0.00 4.63
573 574 6.918067 ACATCTAGATACATCCATTTCCGA 57.082 37.500 4.54 0.00 0.00 4.55
574 575 7.382110 AGAACATCTAGATACATCCATTTCCG 58.618 38.462 4.54 0.00 0.00 4.30
590 591 9.914131 CGGAAATGAATGTATCTAGAACATCTA 57.086 33.333 16.06 10.98 36.56 1.98
591 592 8.642432 TCGGAAATGAATGTATCTAGAACATCT 58.358 33.333 16.06 9.71 36.56 2.90
592 593 8.818141 TCGGAAATGAATGTATCTAGAACATC 57.182 34.615 16.06 11.90 36.56 3.06
593 594 8.642432 TCTCGGAAATGAATGTATCTAGAACAT 58.358 33.333 12.15 12.15 39.22 2.71
594 595 7.921214 GTCTCGGAAATGAATGTATCTAGAACA 59.079 37.037 0.00 3.39 0.00 3.18
595 596 7.921214 TGTCTCGGAAATGAATGTATCTAGAAC 59.079 37.037 0.00 0.00 0.00 3.01
596 597 8.007405 TGTCTCGGAAATGAATGTATCTAGAA 57.993 34.615 0.00 0.00 0.00 2.10
597 598 7.582667 TGTCTCGGAAATGAATGTATCTAGA 57.417 36.000 0.00 0.00 0.00 2.43
598 599 7.923344 ACTTGTCTCGGAAATGAATGTATCTAG 59.077 37.037 0.00 0.00 0.00 2.43
599 600 7.782049 ACTTGTCTCGGAAATGAATGTATCTA 58.218 34.615 0.00 0.00 0.00 1.98
600 601 6.644347 ACTTGTCTCGGAAATGAATGTATCT 58.356 36.000 0.00 0.00 0.00 1.98
601 602 6.910536 ACTTGTCTCGGAAATGAATGTATC 57.089 37.500 0.00 0.00 0.00 2.24
602 603 8.964476 ATTACTTGTCTCGGAAATGAATGTAT 57.036 30.769 0.00 0.00 0.00 2.29
603 604 8.786826 AATTACTTGTCTCGGAAATGAATGTA 57.213 30.769 0.00 0.00 0.00 2.29
604 605 7.148239 GGAATTACTTGTCTCGGAAATGAATGT 60.148 37.037 0.00 0.00 0.00 2.71
605 606 7.189512 GGAATTACTTGTCTCGGAAATGAATG 58.810 38.462 0.00 0.00 0.00 2.67
606 607 6.037172 CGGAATTACTTGTCTCGGAAATGAAT 59.963 38.462 0.00 0.00 0.00 2.57
607 608 5.350365 CGGAATTACTTGTCTCGGAAATGAA 59.650 40.000 0.00 0.00 0.00 2.57
608 609 4.868171 CGGAATTACTTGTCTCGGAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
609 610 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
610 611 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
611 612 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
612 613 4.524316 TTCGGAATTACTTGTCTCGGAA 57.476 40.909 0.00 0.00 0.00 4.30
613 614 4.430007 CATTCGGAATTACTTGTCTCGGA 58.570 43.478 0.00 0.00 0.00 4.55
614 615 3.555956 CCATTCGGAATTACTTGTCTCGG 59.444 47.826 0.00 0.00 0.00 4.63
615 616 4.430007 TCCATTCGGAATTACTTGTCTCG 58.570 43.478 0.00 0.00 38.83 4.04
616 617 4.811557 CCTCCATTCGGAATTACTTGTCTC 59.188 45.833 0.00 0.00 42.21 3.36
617 618 4.384208 CCCTCCATTCGGAATTACTTGTCT 60.384 45.833 0.00 0.00 42.21 3.41
618 619 3.877508 CCCTCCATTCGGAATTACTTGTC 59.122 47.826 0.00 0.00 42.21 3.18
619 620 3.521937 TCCCTCCATTCGGAATTACTTGT 59.478 43.478 0.00 0.00 42.21 3.16
620 621 4.130118 CTCCCTCCATTCGGAATTACTTG 58.870 47.826 0.00 0.00 42.21 3.16
621 622 3.780850 ACTCCCTCCATTCGGAATTACTT 59.219 43.478 0.00 0.00 42.21 2.24
622 623 3.385115 ACTCCCTCCATTCGGAATTACT 58.615 45.455 0.00 0.00 42.21 2.24
623 624 3.840124 ACTCCCTCCATTCGGAATTAC 57.160 47.619 0.00 0.00 42.21 1.89
624 625 3.644738 GGTACTCCCTCCATTCGGAATTA 59.355 47.826 0.00 0.00 42.21 1.40
625 626 2.438392 GGTACTCCCTCCATTCGGAATT 59.562 50.000 0.00 0.00 42.21 2.17
626 627 2.047830 GGTACTCCCTCCATTCGGAAT 58.952 52.381 0.00 0.00 42.21 3.01
627 628 1.007963 AGGTACTCCCTCCATTCGGAA 59.992 52.381 0.00 0.00 40.71 4.30
628 629 0.635009 AGGTACTCCCTCCATTCGGA 59.365 55.000 0.00 0.00 40.71 4.55
629 630 3.225608 AGGTACTCCCTCCATTCGG 57.774 57.895 0.00 0.00 40.71 4.30
637 638 7.586779 TGTATATACAAGTGTGAGGTACTCCCT 60.587 40.741 13.24 0.00 43.88 4.20
638 639 6.548622 TGTATATACAAGTGTGAGGTACTCCC 59.451 42.308 13.24 0.00 43.88 4.30
639 640 7.578310 TGTATATACAAGTGTGAGGTACTCC 57.422 40.000 13.24 0.00 43.88 3.85
684 685 2.551504 GGGCTCGTGTCCCTTTTTCTTA 60.552 50.000 0.00 0.00 40.66 2.10
685 686 1.605753 GGCTCGTGTCCCTTTTTCTT 58.394 50.000 0.00 0.00 0.00 2.52
695 696 0.249911 AAGTCAACTGGGCTCGTGTC 60.250 55.000 0.00 0.00 0.00 3.67
699 700 0.250295 TGGAAAGTCAACTGGGCTCG 60.250 55.000 0.00 0.00 0.00 5.03
930 943 1.468736 GCGTAGTGGGGAAGTAACGAG 60.469 57.143 0.00 0.00 0.00 4.18
1017 1030 0.512952 GTATAAGCATCGCGGCAAGG 59.487 55.000 6.13 0.00 35.83 3.61
1281 1294 1.255342 CTCGCGTCATTACATCAACGG 59.745 52.381 5.77 0.00 35.74 4.44
1323 1336 3.740128 CTCCGAACCCCGCATCCAG 62.740 68.421 0.00 0.00 36.84 3.86
1349 1362 2.244117 CTCCATCTCCACCACCACCG 62.244 65.000 0.00 0.00 0.00 4.94
1475 1491 2.617021 GGCAGTTATTTTGGGACGGAGA 60.617 50.000 0.00 0.00 0.00 3.71
1495 1519 5.079689 ACAAAGTTGTACCAAACCAAAGG 57.920 39.130 0.00 0.00 40.16 3.11
1545 1668 0.177373 GGTTGCTAACTACTCCCCCG 59.823 60.000 0.00 0.00 0.00 5.73
1547 1670 3.134262 CCTAAGGTTGCTAACTACTCCCC 59.866 52.174 0.00 0.00 0.00 4.81
1576 1699 9.148104 GTTTAACACTCGTAGAAAGGATATGTT 57.852 33.333 0.00 0.00 35.07 2.71
1700 2314 7.066284 ACTGCATAACAACTGATTGAGATTACC 59.934 37.037 0.00 0.00 39.30 2.85
1761 2375 2.357009 GACAGCTGCACCATTTCCTATG 59.643 50.000 15.27 0.00 0.00 2.23
1831 2445 7.769970 ACATTCCAAATTCAGTGTTCACATTTT 59.230 29.630 5.74 0.00 0.00 1.82
1877 2491 6.658831 CAATGTATAGCCCATTAAACAGTCG 58.341 40.000 0.00 0.00 31.52 4.18
2172 2786 2.092323 GTACCTGATGAAAGCCCCAAC 58.908 52.381 0.00 0.00 0.00 3.77
2320 2934 6.970613 TGCACTGTATTACTGTATTAGACGTG 59.029 38.462 0.00 1.74 0.00 4.49
2329 2943 3.259625 TGCCTGTGCACTGTATTACTGTA 59.740 43.478 19.41 0.00 44.23 2.74
2853 3467 7.121315 ACCTTTGCATTGGTTCTATTCTTCTAC 59.879 37.037 5.43 0.00 31.62 2.59
2932 3546 4.998051 AGAAATTTGGGCTCCTGTAAAGA 58.002 39.130 0.00 0.00 0.00 2.52
3243 3860 6.931838 ACGAGTGGTCTTGATCAACTAAATA 58.068 36.000 3.38 0.00 0.00 1.40
3263 3880 9.943163 CTACATGATGGAATATACTGATACGAG 57.057 37.037 0.00 0.00 0.00 4.18
3275 3892 5.223655 TCTCCCAACCTACATGATGGAATA 58.776 41.667 13.89 0.00 34.82 1.75
3554 4171 8.314021 CACATCCATACCTAGATACATAAGCAA 58.686 37.037 0.00 0.00 0.00 3.91
3774 4393 1.534729 AAAGCGACCCTCCAATCAAC 58.465 50.000 0.00 0.00 0.00 3.18
4422 5048 3.591196 TTAAATTGCTGTGGACCATGC 57.409 42.857 13.50 13.50 0.00 4.06
4480 5106 8.509690 AGATTCTGATTATTTGTCACAACTGTG 58.490 33.333 3.33 3.33 46.91 3.66
4545 5171 8.220559 AGTGACATACCTAGCCAATTTCAATAT 58.779 33.333 0.00 0.00 0.00 1.28
4569 5195 5.290493 TCTGTACACATGGACAAAAGAGT 57.710 39.130 0.00 0.00 0.00 3.24
4783 5423 4.076175 AGGGGTAGACAGGACAGTATTT 57.924 45.455 0.00 0.00 0.00 1.40
4784 5424 3.778622 AGGGGTAGACAGGACAGTATT 57.221 47.619 0.00 0.00 0.00 1.89
4785 5425 6.494952 CATATAGGGGTAGACAGGACAGTAT 58.505 44.000 0.00 0.00 0.00 2.12
4786 5426 5.751128 GCATATAGGGGTAGACAGGACAGTA 60.751 48.000 0.00 0.00 0.00 2.74
4787 5427 4.742012 CATATAGGGGTAGACAGGACAGT 58.258 47.826 0.00 0.00 0.00 3.55
4911 5551 2.604686 AGCAAGGAGACTCCGCCA 60.605 61.111 15.97 0.00 42.75 5.69
4959 5599 4.099573 TCAAGAGAACGTCCTTTTGTCTCT 59.900 41.667 5.00 6.43 34.95 3.10
5013 5653 3.640029 TGTTCTACTTTCGTTCTCCAGGT 59.360 43.478 0.00 0.00 0.00 4.00
5073 5713 1.275010 TCGAGGCAGTTGAATGCTGTA 59.725 47.619 3.34 0.00 45.75 2.74
5107 5747 4.455533 GCATTGGTGTTCATGTACTTCTCA 59.544 41.667 4.01 0.00 0.00 3.27
5120 5760 0.105760 TTCCCACAGGCATTGGTGTT 60.106 50.000 3.95 0.00 33.19 3.32
5138 5778 5.150715 TCTACATATCCTCCAGCAGATGTT 58.849 41.667 0.00 0.00 0.00 2.71
5140 5780 5.722263 CTTCTACATATCCTCCAGCAGATG 58.278 45.833 0.00 0.00 0.00 2.90
5146 5789 5.336372 GCTACTGCTTCTACATATCCTCCAG 60.336 48.000 0.00 0.00 36.03 3.86
5147 5790 4.524714 GCTACTGCTTCTACATATCCTCCA 59.475 45.833 0.00 0.00 36.03 3.86
5148 5791 5.066968 GCTACTGCTTCTACATATCCTCC 57.933 47.826 0.00 0.00 36.03 4.30
5186 5832 3.181491 ACTGTGTATGTGGTGCAACAAAC 60.181 43.478 5.70 6.06 39.98 2.93
5197 5843 3.807622 AGTTCGGTGAAACTGTGTATGTG 59.192 43.478 0.00 0.00 45.64 3.21
5198 5844 4.067972 AGTTCGGTGAAACTGTGTATGT 57.932 40.909 0.00 0.00 45.64 2.29
5199 5845 4.376008 CGAAGTTCGGTGAAACTGTGTATG 60.376 45.833 17.61 0.00 45.64 2.39
5201 5847 3.117794 CGAAGTTCGGTGAAACTGTGTA 58.882 45.455 17.61 0.00 45.64 2.90
5215 5861 2.546778 TGGGCGTAATGATCGAAGTTC 58.453 47.619 0.00 0.00 0.00 3.01
5268 5916 2.221981 GCGCTATTATCAACTGAGGTGC 59.778 50.000 0.00 0.00 0.00 5.01
5315 5963 6.011981 ACAAGAATGGTATTTCCTCTACCCAA 60.012 38.462 0.00 0.00 38.29 4.12
5411 6059 4.035324 CACATCTCTGGAAGAATGCACATC 59.965 45.833 0.00 0.00 46.34 3.06
5412 6060 3.945921 CACATCTCTGGAAGAATGCACAT 59.054 43.478 0.00 0.00 46.34 3.21
5417 6065 5.970592 TGACTACACATCTCTGGAAGAATG 58.029 41.667 0.00 0.00 46.34 2.67
5427 6075 5.363979 TCGATGCTATGACTACACATCTC 57.636 43.478 0.00 0.00 35.96 2.75
5462 6110 9.496873 TTTATCCATTTGTATAGGATACGTTGG 57.503 33.333 0.00 0.00 42.45 3.77
5482 6130 6.524101 TTGCACCCAAGAAATACTTTATCC 57.476 37.500 0.00 0.00 36.61 2.59
5497 6269 3.037549 AGATTTGTTTTCCTTGCACCCA 58.962 40.909 0.00 0.00 0.00 4.51
5530 6302 2.217750 CAAGTGGATGTGAAACGGTCA 58.782 47.619 0.00 0.00 42.39 4.02
5568 6340 1.154225 CGAATCCGTGCACTTTGCC 60.154 57.895 16.19 0.40 44.23 4.52
5607 6379 6.080648 TCTTCAACATAGTCTGTTACGTGT 57.919 37.500 0.00 0.00 46.43 4.49
5611 6383 9.640963 AGTGTAATCTTCAACATAGTCTGTTAC 57.359 33.333 0.00 0.00 46.43 2.50
5646 6418 3.309388 CAGATATGCGTCCGTAGAAAGG 58.691 50.000 0.00 0.00 0.00 3.11
5647 6419 2.726760 GCAGATATGCGTCCGTAGAAAG 59.273 50.000 0.00 0.00 0.00 2.62
5655 6427 0.249615 TGCTCTGCAGATATGCGTCC 60.250 55.000 18.63 0.00 37.69 4.79
5681 6453 2.634940 AGTGCTCTGCAGACCTCTAAAA 59.365 45.455 13.74 0.00 40.08 1.52
5682 6454 2.251818 AGTGCTCTGCAGACCTCTAAA 58.748 47.619 13.74 0.00 40.08 1.85
5683 6455 1.930251 AGTGCTCTGCAGACCTCTAA 58.070 50.000 13.74 0.00 40.08 2.10
5684 6456 1.821753 GAAGTGCTCTGCAGACCTCTA 59.178 52.381 13.74 0.00 40.08 2.43
5685 6457 0.607620 GAAGTGCTCTGCAGACCTCT 59.392 55.000 13.74 10.12 40.08 3.69
5686 6458 0.607620 AGAAGTGCTCTGCAGACCTC 59.392 55.000 13.74 7.69 40.08 3.85
5687 6459 1.055040 AAGAAGTGCTCTGCAGACCT 58.945 50.000 13.74 6.14 40.08 3.85
5688 6460 1.534595 CAAAGAAGTGCTCTGCAGACC 59.465 52.381 13.74 7.29 40.08 3.85
5689 6461 2.216898 ACAAAGAAGTGCTCTGCAGAC 58.783 47.619 13.74 10.67 40.08 3.51
5690 6462 2.627515 ACAAAGAAGTGCTCTGCAGA 57.372 45.000 17.19 17.19 40.08 4.26
5691 6463 3.812053 ACTTACAAAGAAGTGCTCTGCAG 59.188 43.478 7.63 7.63 40.08 4.41
5692 6464 3.808728 ACTTACAAAGAAGTGCTCTGCA 58.191 40.909 0.00 0.00 38.25 4.41
5693 6465 4.319839 GGAACTTACAAAGAAGTGCTCTGC 60.320 45.833 0.00 0.00 39.62 4.26
5694 6466 4.816385 TGGAACTTACAAAGAAGTGCTCTG 59.184 41.667 0.00 0.00 39.62 3.35
5695 6467 4.816925 GTGGAACTTACAAAGAAGTGCTCT 59.183 41.667 0.00 0.00 39.62 4.09
5696 6468 4.574828 TGTGGAACTTACAAAGAAGTGCTC 59.425 41.667 0.00 0.00 39.62 4.26
5697 6469 4.335594 GTGTGGAACTTACAAAGAAGTGCT 59.664 41.667 0.00 0.00 39.62 4.40
5698 6470 4.497507 GGTGTGGAACTTACAAAGAAGTGC 60.498 45.833 0.00 0.00 39.62 4.40
5699 6471 4.881850 AGGTGTGGAACTTACAAAGAAGTG 59.118 41.667 0.00 0.00 39.62 3.16
5700 6472 5.112129 AGGTGTGGAACTTACAAAGAAGT 57.888 39.130 0.00 0.00 41.50 3.01
5701 6473 5.123227 TGAGGTGTGGAACTTACAAAGAAG 58.877 41.667 0.00 0.00 38.04 2.85
5702 6474 5.105567 TGAGGTGTGGAACTTACAAAGAA 57.894 39.130 0.00 0.00 38.04 2.52
5703 6475 4.764050 TGAGGTGTGGAACTTACAAAGA 57.236 40.909 0.00 0.00 38.04 2.52
5704 6476 4.638421 TGTTGAGGTGTGGAACTTACAAAG 59.362 41.667 0.00 0.00 38.04 2.77
5705 6477 4.590918 TGTTGAGGTGTGGAACTTACAAA 58.409 39.130 0.00 0.00 38.04 2.83
5706 6478 4.080807 TCTGTTGAGGTGTGGAACTTACAA 60.081 41.667 0.00 0.00 38.04 2.41
5707 6479 3.452990 TCTGTTGAGGTGTGGAACTTACA 59.547 43.478 0.00 0.00 38.04 2.41
5713 6487 0.531974 GCGTCTGTTGAGGTGTGGAA 60.532 55.000 0.00 0.00 0.00 3.53
5714 6488 1.069090 GCGTCTGTTGAGGTGTGGA 59.931 57.895 0.00 0.00 0.00 4.02
5720 6494 0.732880 CCTACGTGCGTCTGTTGAGG 60.733 60.000 0.00 0.00 0.00 3.86
5736 6510 3.861113 CAGCGCGTATAAAGTGTTTCCTA 59.139 43.478 8.43 0.00 0.00 2.94
5845 6627 9.512588 AATCTATGTATGGCCTGAATTTAGAAG 57.487 33.333 3.32 0.00 0.00 2.85
5854 6636 5.912149 AAGGAAATCTATGTATGGCCTGA 57.088 39.130 3.32 0.00 0.00 3.86
5855 6637 6.302269 AGAAAGGAAATCTATGTATGGCCTG 58.698 40.000 3.32 0.00 0.00 4.85
5908 6690 1.219724 TCACCTAGGCTAGTAAGGGGG 59.780 57.143 19.68 6.73 34.36 5.40
5909 6691 2.317973 GTCACCTAGGCTAGTAAGGGG 58.682 57.143 19.68 8.87 34.94 4.79
5910 6692 1.955080 CGTCACCTAGGCTAGTAAGGG 59.045 57.143 19.68 7.92 34.52 3.95
5912 6694 3.543665 ACTCGTCACCTAGGCTAGTAAG 58.456 50.000 19.68 7.66 0.00 2.34
5914 6696 4.760530 TTACTCGTCACCTAGGCTAGTA 57.239 45.455 19.68 6.91 0.00 1.82
5917 6699 5.927281 AAATTTACTCGTCACCTAGGCTA 57.073 39.130 9.30 0.00 0.00 3.93
5918 6700 4.820894 AAATTTACTCGTCACCTAGGCT 57.179 40.909 9.30 0.00 0.00 4.58
5935 6717 5.284079 CACACTGCACAGCTCTTAAAAATT 58.716 37.500 0.00 0.00 0.00 1.82
5936 6718 4.794003 GCACACTGCACAGCTCTTAAAAAT 60.794 41.667 0.00 0.00 44.26 1.82
5966 6779 3.925630 ATGCAGTGGGTGGAAGCGG 62.926 63.158 0.00 0.00 33.03 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.