Multiple sequence alignment - TraesCS5B01G201000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G201000 chr5B 100.000 5196 0 0 1 5196 363575152 363569957 0.000000e+00 9596.0
1 TraesCS5B01G201000 chr5B 91.163 860 49 14 3452 4300 239385920 239385077 0.000000e+00 1142.0
2 TraesCS5B01G201000 chr5B 97.863 234 5 0 1 234 363590679 363590446 6.270000e-109 405.0
3 TraesCS5B01G201000 chr5A 95.754 3980 125 21 763 4707 409819143 409815173 0.000000e+00 6373.0
4 TraesCS5B01G201000 chr5A 90.789 304 24 3 262 562 409820291 409819989 2.250000e-108 403.0
5 TraesCS5B01G201000 chr5A 88.462 208 20 3 559 766 409819733 409819530 1.120000e-61 248.0
6 TraesCS5B01G201000 chr5A 88.679 106 9 1 4888 4990 409815172 409815067 5.460000e-25 126.0
7 TraesCS5B01G201000 chr5A 92.308 52 2 2 4700 4751 409815212 409815163 7.220000e-09 73.1
8 TraesCS5B01G201000 chr5D 95.313 3990 136 21 754 4707 315380996 315377022 0.000000e+00 6285.0
9 TraesCS5B01G201000 chr5D 97.009 234 7 0 1 234 197250625 197250392 1.360000e-105 394.0
10 TraesCS5B01G201000 chr5D 97.021 235 6 1 1 234 312082865 312083099 1.360000e-105 394.0
11 TraesCS5B01G201000 chr5D 93.976 166 10 0 3877 4042 172296283 172296448 8.640000e-63 252.0
12 TraesCS5B01G201000 chr5D 92.169 166 13 0 3877 4042 368502033 368501868 8.700000e-58 235.0
13 TraesCS5B01G201000 chr5D 83.212 274 23 9 4888 5139 315377021 315376749 4.050000e-56 230.0
14 TraesCS5B01G201000 chr5D 93.750 48 2 1 4704 4751 315377058 315377012 2.600000e-08 71.3
15 TraesCS5B01G201000 chr4A 92.147 1337 77 11 2976 4300 689221795 689220475 0.000000e+00 1862.0
16 TraesCS5B01G201000 chr4A 94.512 492 15 6 2501 2984 689222761 689222274 0.000000e+00 749.0
17 TraesCS5B01G201000 chr4A 93.373 166 10 1 3877 4042 95707176 95707012 1.450000e-60 244.0
18 TraesCS5B01G201000 chr6B 89.559 1293 87 23 2905 4187 629834050 629832796 0.000000e+00 1596.0
19 TraesCS5B01G201000 chr4D 81.698 754 96 23 1727 2469 486107534 486106812 1.610000e-164 590.0
20 TraesCS5B01G201000 chr4D 78.715 249 37 5 532 765 436372489 436372242 9.010000e-33 152.0
21 TraesCS5B01G201000 chr4D 81.818 99 13 3 557 654 403293898 403293804 1.550000e-10 78.7
22 TraesCS5B01G201000 chr7D 97.447 235 5 1 1 234 276822190 276822424 2.910000e-107 399.0
23 TraesCS5B01G201000 chr3D 97.436 234 6 0 1 234 551529967 551530200 2.910000e-107 399.0
24 TraesCS5B01G201000 chr3D 94.578 166 9 0 3877 4042 575152240 575152075 1.860000e-64 257.0
25 TraesCS5B01G201000 chr3D 81.481 81 15 0 653 733 418756891 418756971 3.360000e-07 67.6
26 TraesCS5B01G201000 chr3A 97.447 235 5 1 1 234 153293460 153293226 2.910000e-107 399.0
27 TraesCS5B01G201000 chr2B 97.447 235 5 1 1 234 262759601 262759835 2.910000e-107 399.0
28 TraesCS5B01G201000 chr2B 88.571 140 5 3 4749 4886 202263642 202263512 5.390000e-35 159.0
29 TraesCS5B01G201000 chr2B 92.941 85 6 0 4807 4891 550810504 550810420 1.960000e-24 124.0
30 TraesCS5B01G201000 chr2B 82.482 137 16 4 4749 4885 486115363 486115235 4.250000e-21 113.0
31 TraesCS5B01G201000 chr1B 97.436 234 6 0 1 234 530937505 530937272 2.910000e-107 399.0
32 TraesCS5B01G201000 chrUn 97.021 235 6 1 1 234 86260494 86260728 1.360000e-105 394.0
33 TraesCS5B01G201000 chr7A 76.031 509 84 29 2026 2512 217767332 217767824 4.050000e-56 230.0
34 TraesCS5B01G201000 chr2D 90.580 138 3 3 4749 4886 528591410 528591283 1.920000e-39 174.0
35 TraesCS5B01G201000 chr2D 97.500 80 2 0 4807 4886 574823628 574823549 2.520000e-28 137.0
36 TraesCS5B01G201000 chr2D 85.385 130 10 2 4757 4886 542620042 542619922 5.460000e-25 126.0
37 TraesCS5B01G201000 chr2D 83.571 140 12 6 4754 4893 564441069 564441197 2.540000e-23 121.0
38 TraesCS5B01G201000 chr4B 79.032 248 33 9 533 762 54333402 54333648 9.010000e-33 152.0
39 TraesCS5B01G201000 chr4B 84.892 139 16 4 2321 2458 357394823 357394689 9.080000e-28 135.0
40 TraesCS5B01G201000 chr4B 84.672 137 17 3 2321 2456 357293452 357293319 3.260000e-27 134.0
41 TraesCS5B01G201000 chr3B 86.331 139 14 4 2321 2458 511167332 511167466 4.190000e-31 147.0
42 TraesCS5B01G201000 chr3B 77.729 229 30 8 536 747 150857544 150857768 2.540000e-23 121.0
43 TraesCS5B01G201000 chr3B 92.771 83 5 1 4805 4886 481912952 481913034 9.140000e-23 119.0
44 TraesCS5B01G201000 chr6A 85.507 138 11 3 4749 4886 604219466 604219338 9.080000e-28 135.0
45 TraesCS5B01G201000 chr1D 77.328 247 37 5 533 762 365805622 365805866 1.520000e-25 128.0
46 TraesCS5B01G201000 chr1D 93.671 79 5 0 4807 4885 36626092 36626170 9.140000e-23 119.0
47 TraesCS5B01G201000 chr6D 95.000 80 4 0 4807 4886 464482225 464482304 5.460000e-25 126.0
48 TraesCS5B01G201000 chr7B 92.135 89 5 2 4808 4895 331594355 331594442 1.960000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G201000 chr5B 363569957 363575152 5195 True 9596.000000 9596 100.000000 1 5196 1 chr5B.!!$R2 5195
1 TraesCS5B01G201000 chr5B 239385077 239385920 843 True 1142.000000 1142 91.163000 3452 4300 1 chr5B.!!$R1 848
2 TraesCS5B01G201000 chr5A 409815067 409820291 5224 True 1444.620000 6373 91.198400 262 4990 5 chr5A.!!$R1 4728
3 TraesCS5B01G201000 chr5D 315376749 315380996 4247 True 2195.433333 6285 90.758333 754 5139 3 chr5D.!!$R3 4385
4 TraesCS5B01G201000 chr4A 689220475 689222761 2286 True 1305.500000 1862 93.329500 2501 4300 2 chr4A.!!$R2 1799
5 TraesCS5B01G201000 chr6B 629832796 629834050 1254 True 1596.000000 1596 89.559000 2905 4187 1 chr6B.!!$R1 1282
6 TraesCS5B01G201000 chr4D 486106812 486107534 722 True 590.000000 590 81.698000 1727 2469 1 chr4D.!!$R3 742

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
539 541 0.320771 AATCGGATGCGGGCATACTC 60.321 55.000 13.61 0.0 35.19 2.59 F
557 559 1.372997 CCCTCCGTCCGCGAATATG 60.373 63.158 8.23 0.0 41.33 1.78 F
1789 2446 0.473326 ATGATCCTGCCTCCTTGCTC 59.527 55.000 0.00 0.0 0.00 4.26 F
3075 4240 1.401539 GCGAATTTCACTTGACCCAGC 60.402 52.381 0.00 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1645 2301 0.856641 TGCGTTGCACTCGTAAGTTC 59.143 50.000 11.22 0.00 31.71 3.01 R
2554 3228 1.068748 TCAGTTCGTAGGTGCGAGTTC 60.069 52.381 0.00 0.00 42.10 3.01 R
3520 4691 2.414293 GCTGTCAGCTTCTGCAATTGAG 60.414 50.000 17.89 4.15 42.74 3.02 R
4933 6149 0.030101 TTGCGCTGTTACAAGGCAAC 59.970 50.000 15.51 0.64 38.55 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.792830 AAAATATAAGTGAAGCACTAGAGCAA 57.207 30.769 14.80 0.00 44.62 3.91
26 27 8.792830 AAATATAAGTGAAGCACTAGAGCAAA 57.207 30.769 14.80 0.00 44.62 3.68
27 28 8.970859 AATATAAGTGAAGCACTAGAGCAAAT 57.029 30.769 14.80 0.01 44.62 2.32
28 29 6.674694 ATAAGTGAAGCACTAGAGCAAATG 57.325 37.500 14.80 0.00 44.62 2.32
29 30 4.277515 AGTGAAGCACTAGAGCAAATGA 57.722 40.909 14.80 0.00 43.46 2.57
30 31 3.999663 AGTGAAGCACTAGAGCAAATGAC 59.000 43.478 14.80 4.80 43.46 3.06
31 32 3.748048 GTGAAGCACTAGAGCAAATGACA 59.252 43.478 14.80 2.67 36.85 3.58
32 33 4.214119 GTGAAGCACTAGAGCAAATGACAA 59.786 41.667 14.80 0.00 36.85 3.18
33 34 4.821260 TGAAGCACTAGAGCAAATGACAAA 59.179 37.500 14.80 0.00 36.85 2.83
34 35 4.756084 AGCACTAGAGCAAATGACAAAC 57.244 40.909 14.80 0.00 36.85 2.93
35 36 4.392940 AGCACTAGAGCAAATGACAAACT 58.607 39.130 14.80 0.00 36.85 2.66
36 37 5.551233 AGCACTAGAGCAAATGACAAACTA 58.449 37.500 14.80 0.00 36.85 2.24
37 38 5.409826 AGCACTAGAGCAAATGACAAACTAC 59.590 40.000 14.80 0.00 36.85 2.73
38 39 5.409826 GCACTAGAGCAAATGACAAACTACT 59.590 40.000 7.33 0.00 0.00 2.57
39 40 6.401581 GCACTAGAGCAAATGACAAACTACTC 60.402 42.308 7.33 0.00 0.00 2.59
40 41 6.091441 CACTAGAGCAAATGACAAACTACTCC 59.909 42.308 0.00 0.00 0.00 3.85
41 42 4.973168 AGAGCAAATGACAAACTACTCCA 58.027 39.130 0.00 0.00 0.00 3.86
42 43 5.376625 AGAGCAAATGACAAACTACTCCAA 58.623 37.500 0.00 0.00 0.00 3.53
43 44 5.827797 AGAGCAAATGACAAACTACTCCAAA 59.172 36.000 0.00 0.00 0.00 3.28
44 45 6.321181 AGAGCAAATGACAAACTACTCCAAAA 59.679 34.615 0.00 0.00 0.00 2.44
45 46 6.507023 AGCAAATGACAAACTACTCCAAAAG 58.493 36.000 0.00 0.00 0.00 2.27
46 47 6.321181 AGCAAATGACAAACTACTCCAAAAGA 59.679 34.615 0.00 0.00 0.00 2.52
47 48 7.014615 AGCAAATGACAAACTACTCCAAAAGAT 59.985 33.333 0.00 0.00 0.00 2.40
48 49 8.296713 GCAAATGACAAACTACTCCAAAAGATA 58.703 33.333 0.00 0.00 0.00 1.98
106 107 8.631480 TGTAACTATGTGAAGACTCTCTAACA 57.369 34.615 0.00 0.00 30.82 2.41
107 108 9.244292 TGTAACTATGTGAAGACTCTCTAACAT 57.756 33.333 6.50 6.50 37.54 2.71
148 149 9.255304 TCTTGGTATTTTATTCAAACAACAAGC 57.745 29.630 0.00 0.00 35.50 4.01
149 150 8.948631 TTGGTATTTTATTCAAACAACAAGCA 57.051 26.923 0.00 0.00 0.00 3.91
150 151 8.948631 TGGTATTTTATTCAAACAACAAGCAA 57.051 26.923 0.00 0.00 0.00 3.91
151 152 9.383519 TGGTATTTTATTCAAACAACAAGCAAA 57.616 25.926 0.00 0.00 0.00 3.68
152 153 9.862585 GGTATTTTATTCAAACAACAAGCAAAG 57.137 29.630 0.00 0.00 0.00 2.77
153 154 9.368921 GTATTTTATTCAAACAACAAGCAAAGC 57.631 29.630 0.00 0.00 0.00 3.51
154 155 6.974932 TTTATTCAAACAACAAGCAAAGCA 57.025 29.167 0.00 0.00 0.00 3.91
155 156 6.974932 TTATTCAAACAACAAGCAAAGCAA 57.025 29.167 0.00 0.00 0.00 3.91
156 157 5.876612 ATTCAAACAACAAGCAAAGCAAA 57.123 30.435 0.00 0.00 0.00 3.68
157 158 5.679734 TTCAAACAACAAGCAAAGCAAAA 57.320 30.435 0.00 0.00 0.00 2.44
158 159 5.876612 TCAAACAACAAGCAAAGCAAAAT 57.123 30.435 0.00 0.00 0.00 1.82
159 160 6.974932 TCAAACAACAAGCAAAGCAAAATA 57.025 29.167 0.00 0.00 0.00 1.40
160 161 7.369803 TCAAACAACAAGCAAAGCAAAATAA 57.630 28.000 0.00 0.00 0.00 1.40
161 162 7.810658 TCAAACAACAAGCAAAGCAAAATAAA 58.189 26.923 0.00 0.00 0.00 1.40
162 163 8.292448 TCAAACAACAAGCAAAGCAAAATAAAA 58.708 25.926 0.00 0.00 0.00 1.52
163 164 8.364482 CAAACAACAAGCAAAGCAAAATAAAAC 58.636 29.630 0.00 0.00 0.00 2.43
164 165 7.138692 ACAACAAGCAAAGCAAAATAAAACA 57.861 28.000 0.00 0.00 0.00 2.83
165 166 7.588512 ACAACAAGCAAAGCAAAATAAAACAA 58.411 26.923 0.00 0.00 0.00 2.83
166 167 8.078596 ACAACAAGCAAAGCAAAATAAAACAAA 58.921 25.926 0.00 0.00 0.00 2.83
167 168 8.909671 CAACAAGCAAAGCAAAATAAAACAAAA 58.090 25.926 0.00 0.00 0.00 2.44
168 169 9.636879 AACAAGCAAAGCAAAATAAAACAAAAT 57.363 22.222 0.00 0.00 0.00 1.82
169 170 9.074443 ACAAGCAAAGCAAAATAAAACAAAATG 57.926 25.926 0.00 0.00 0.00 2.32
170 171 9.286946 CAAGCAAAGCAAAATAAAACAAAATGA 57.713 25.926 0.00 0.00 0.00 2.57
171 172 8.839947 AGCAAAGCAAAATAAAACAAAATGAC 57.160 26.923 0.00 0.00 0.00 3.06
172 173 7.639461 AGCAAAGCAAAATAAAACAAAATGACG 59.361 29.630 0.00 0.00 0.00 4.35
173 174 7.563119 GCAAAGCAAAATAAAACAAAATGACGC 60.563 33.333 0.00 0.00 0.00 5.19
174 175 6.843069 AGCAAAATAAAACAAAATGACGCT 57.157 29.167 0.00 0.00 0.00 5.07
175 176 6.876804 AGCAAAATAAAACAAAATGACGCTC 58.123 32.000 0.00 0.00 0.00 5.03
176 177 6.070829 GCAAAATAAAACAAAATGACGCTCC 58.929 36.000 0.00 0.00 0.00 4.70
177 178 6.292596 GCAAAATAAAACAAAATGACGCTCCA 60.293 34.615 0.00 0.00 0.00 3.86
178 179 7.625553 CAAAATAAAACAAAATGACGCTCCAA 58.374 30.769 0.00 0.00 0.00 3.53
179 180 7.406799 AAATAAAACAAAATGACGCTCCAAG 57.593 32.000 0.00 0.00 0.00 3.61
180 181 2.422276 AACAAAATGACGCTCCAAGC 57.578 45.000 0.00 0.00 38.02 4.01
181 182 1.317613 ACAAAATGACGCTCCAAGCA 58.682 45.000 0.00 0.00 42.58 3.91
182 183 1.680735 ACAAAATGACGCTCCAAGCAA 59.319 42.857 0.00 0.00 42.58 3.91
183 184 2.100584 ACAAAATGACGCTCCAAGCAAA 59.899 40.909 0.00 0.00 42.58 3.68
184 185 3.122297 CAAAATGACGCTCCAAGCAAAA 58.878 40.909 0.00 0.00 42.58 2.44
185 186 2.422276 AATGACGCTCCAAGCAAAAC 57.578 45.000 0.00 0.00 42.58 2.43
186 187 1.317613 ATGACGCTCCAAGCAAAACA 58.682 45.000 0.00 0.00 42.58 2.83
187 188 0.380378 TGACGCTCCAAGCAAAACAC 59.620 50.000 0.00 0.00 42.58 3.32
188 189 0.380378 GACGCTCCAAGCAAAACACA 59.620 50.000 0.00 0.00 42.58 3.72
189 190 1.001378 GACGCTCCAAGCAAAACACAT 60.001 47.619 0.00 0.00 42.58 3.21
190 191 2.225491 GACGCTCCAAGCAAAACACATA 59.775 45.455 0.00 0.00 42.58 2.29
191 192 2.819608 ACGCTCCAAGCAAAACACATAT 59.180 40.909 0.00 0.00 42.58 1.78
192 193 3.119849 ACGCTCCAAGCAAAACACATATC 60.120 43.478 0.00 0.00 42.58 1.63
193 194 3.119884 CGCTCCAAGCAAAACACATATCA 60.120 43.478 0.00 0.00 42.58 2.15
194 195 4.439153 CGCTCCAAGCAAAACACATATCAT 60.439 41.667 0.00 0.00 42.58 2.45
195 196 4.802039 GCTCCAAGCAAAACACATATCATG 59.198 41.667 0.00 0.00 41.89 3.07
196 197 5.622914 GCTCCAAGCAAAACACATATCATGT 60.623 40.000 0.00 0.00 42.27 3.21
217 218 9.066892 TCATGTGGTGAATAAAAATATAGCTCC 57.933 33.333 0.00 0.00 32.78 4.70
218 219 8.849168 CATGTGGTGAATAAAAATATAGCTCCA 58.151 33.333 0.00 0.00 0.00 3.86
219 220 8.815565 TGTGGTGAATAAAAATATAGCTCCAA 57.184 30.769 0.00 0.00 0.00 3.53
220 221 8.902806 TGTGGTGAATAAAAATATAGCTCCAAG 58.097 33.333 0.00 0.00 0.00 3.61
221 222 8.903820 GTGGTGAATAAAAATATAGCTCCAAGT 58.096 33.333 0.00 0.00 0.00 3.16
231 232 8.658499 AAATATAGCTCCAAGTAAAGTTACCG 57.342 34.615 0.00 0.00 34.19 4.02
232 233 5.927281 ATAGCTCCAAGTAAAGTTACCGA 57.073 39.130 0.00 0.00 34.19 4.69
233 234 4.820894 AGCTCCAAGTAAAGTTACCGAT 57.179 40.909 0.00 0.00 34.19 4.18
234 235 5.161943 AGCTCCAAGTAAAGTTACCGATT 57.838 39.130 0.00 0.00 34.19 3.34
235 236 5.176592 AGCTCCAAGTAAAGTTACCGATTC 58.823 41.667 0.00 0.00 34.19 2.52
236 237 5.046520 AGCTCCAAGTAAAGTTACCGATTCT 60.047 40.000 0.00 0.00 34.19 2.40
237 238 5.642491 GCTCCAAGTAAAGTTACCGATTCTT 59.358 40.000 0.00 0.00 34.19 2.52
238 239 6.183360 GCTCCAAGTAAAGTTACCGATTCTTC 60.183 42.308 0.00 0.00 34.19 2.87
239 240 7.001099 TCCAAGTAAAGTTACCGATTCTTCT 57.999 36.000 0.00 0.00 34.19 2.85
240 241 7.447594 TCCAAGTAAAGTTACCGATTCTTCTT 58.552 34.615 0.00 0.00 34.19 2.52
241 242 7.601508 TCCAAGTAAAGTTACCGATTCTTCTTC 59.398 37.037 0.00 0.00 34.19 2.87
242 243 7.411588 CCAAGTAAAGTTACCGATTCTTCTTCG 60.412 40.741 0.00 0.00 34.19 3.79
247 248 4.126524 CGATTCTTCTTCGGGGCC 57.873 61.111 0.00 0.00 33.05 5.80
248 249 1.220749 CGATTCTTCTTCGGGGCCA 59.779 57.895 4.39 0.00 33.05 5.36
249 250 1.090052 CGATTCTTCTTCGGGGCCAC 61.090 60.000 4.39 0.00 33.05 5.01
250 251 1.078426 ATTCTTCTTCGGGGCCACG 60.078 57.895 25.03 25.03 0.00 4.94
251 252 1.550130 ATTCTTCTTCGGGGCCACGA 61.550 55.000 30.05 30.05 41.76 4.35
252 253 2.434359 CTTCTTCGGGGCCACGAC 60.434 66.667 33.92 2.12 43.37 4.34
253 254 4.367023 TTCTTCGGGGCCACGACG 62.367 66.667 33.92 30.03 43.37 5.12
255 256 4.796231 CTTCGGGGCCACGACGAG 62.796 72.222 33.92 23.15 43.37 4.18
265 266 2.915659 ACGACGAGGGCTTCCACA 60.916 61.111 0.00 0.00 0.00 4.17
322 323 1.383248 ATGGCTCTAGGCGGAAGGT 60.383 57.895 0.00 0.00 44.42 3.50
353 354 4.163427 GAGGAATGATGGGAGTGGAGATA 58.837 47.826 0.00 0.00 0.00 1.98
384 385 0.613777 ATTGACGGGTCAGGAAGGAC 59.386 55.000 1.37 0.00 41.13 3.85
436 437 3.041946 ACACAAACCTGGGCCAAATTTA 58.958 40.909 8.04 0.00 0.00 1.40
461 462 4.524328 ACAGGAAATGAGTCCAAATGAACC 59.476 41.667 0.00 0.00 40.48 3.62
464 465 6.094603 CAGGAAATGAGTCCAAATGAACCTAG 59.905 42.308 0.00 0.00 40.48 3.02
465 466 5.163612 GGAAATGAGTCCAAATGAACCTAGC 60.164 44.000 0.00 0.00 37.65 3.42
469 470 3.074412 AGTCCAAATGAACCTAGCAACG 58.926 45.455 0.00 0.00 0.00 4.10
539 541 0.320771 AATCGGATGCGGGCATACTC 60.321 55.000 13.61 0.00 35.19 2.59
556 558 1.524863 CTCCCTCCGTCCGCGAATAT 61.525 60.000 8.23 0.00 41.33 1.28
557 559 1.372997 CCCTCCGTCCGCGAATATG 60.373 63.158 8.23 0.00 41.33 1.78
566 829 3.904824 CGTCCGCGAATATGTACTTCTAC 59.095 47.826 8.23 0.00 41.33 2.59
572 835 6.919662 CCGCGAATATGTACTTCTACCTTTTA 59.080 38.462 8.23 0.00 0.00 1.52
658 921 6.155827 ACATCAAATTGGTATGTCAAAACGG 58.844 36.000 0.00 0.00 0.00 4.44
701 964 7.190920 AGTGACATAAGTGTTGCTACTTTTC 57.809 36.000 0.00 0.74 41.01 2.29
712 975 8.021396 AGTGTTGCTACTTTTCCGAATAAAATC 58.979 33.333 0.00 0.00 0.00 2.17
724 987 8.889849 TTCCGAATAAAATCGATCAAAGTTTC 57.110 30.769 0.00 0.00 45.48 2.78
772 1425 9.502091 AGCAAGATGTACACTTCTTATTTGTTA 57.498 29.630 10.62 0.00 38.00 2.41
815 1468 4.210537 CCTCAACTTTACACCAACTGTACG 59.789 45.833 0.00 0.00 34.91 3.67
950 1606 3.607370 GACACCGCCCTTCCTGACC 62.607 68.421 0.00 0.00 0.00 4.02
1645 2301 3.519510 TCCTGGTTCTCTGGTCTAATTGG 59.480 47.826 0.00 0.00 36.08 3.16
1653 2309 5.962433 TCTCTGGTCTAATTGGAACTTACG 58.038 41.667 8.44 0.00 0.00 3.18
1789 2446 0.473326 ATGATCCTGCCTCCTTGCTC 59.527 55.000 0.00 0.00 0.00 4.26
1822 2479 3.253188 TGGCTTATGAAGTCTGTGTTTGC 59.747 43.478 0.00 0.00 33.26 3.68
2157 2822 7.652909 CCTGCACATGTTTGAAATTTTCTTAGA 59.347 33.333 10.33 0.00 0.00 2.10
2215 2880 5.866633 CAGAGTGATTCACAGTTTCTAGGAC 59.133 44.000 18.57 0.00 36.74 3.85
2554 3228 1.852895 GAAGTATTGTGCTAGGCGACG 59.147 52.381 0.00 0.00 0.00 5.12
2579 3253 4.577693 ACTCGCACCTACGAACTGATTATA 59.422 41.667 0.00 0.00 42.39 0.98
2581 3255 5.458015 TCGCACCTACGAACTGATTATATG 58.542 41.667 0.00 0.00 39.54 1.78
3047 4212 7.489113 GTGCCATGTATGTTCCATTTAAGAAAG 59.511 37.037 0.00 0.00 0.00 2.62
3075 4240 1.401539 GCGAATTTCACTTGACCCAGC 60.402 52.381 0.00 0.00 0.00 4.85
3176 4342 9.903682 CATGATCTTTGTACTTTCTTTCACATT 57.096 29.630 0.00 0.00 0.00 2.71
3515 4686 3.981071 TTCATTCTCTGAATGGACGGT 57.019 42.857 16.98 0.00 38.97 4.83
3520 4691 4.386867 TTCTCTGAATGGACGGTACATC 57.613 45.455 6.26 1.41 0.00 3.06
3714 4893 4.790962 CGGCTGTGCTGGGCTCAT 62.791 66.667 0.00 0.00 31.70 2.90
3813 4992 7.594758 ACATTGTAATTTCGTTTTCTGACATGG 59.405 33.333 0.00 0.00 0.00 3.66
3825 5022 2.103941 TCTGACATGGTGTACTGTTGCA 59.896 45.455 0.00 0.00 0.00 4.08
3884 5081 7.604164 TGACTTTCAAGGAGTAGCTATTTGAAG 59.396 37.037 17.37 15.09 38.52 3.02
3895 5092 6.881065 AGTAGCTATTTGAAGCAATTCAGTGA 59.119 34.615 0.00 0.00 45.30 3.41
3919 5116 2.054687 TACGTAACAGCTGAACACCG 57.945 50.000 23.35 16.17 0.00 4.94
3928 5125 3.236816 CAGCTGAACACCGCTTTTATTG 58.763 45.455 8.42 0.00 33.45 1.90
4079 5278 2.173356 TCTGGATACCTTTGGATGGCTG 59.827 50.000 0.00 0.00 0.00 4.85
4107 5306 5.447548 CGGACACTAGCTTCTCTAACACTAC 60.448 48.000 0.00 0.00 0.00 2.73
4181 5380 5.105310 GCTACAGGGATTATCCATACGTCAT 60.105 44.000 13.78 0.00 38.64 3.06
4189 5388 6.127310 GGATTATCCATACGTCATCTAGCCTT 60.127 42.308 6.34 0.00 36.28 4.35
4207 5408 4.288626 AGCCTTTCCTAACATGTTGAGGTA 59.711 41.667 21.42 13.50 0.00 3.08
4212 5415 5.499004 TCCTAACATGTTGAGGTAAGCTT 57.501 39.130 21.42 3.48 0.00 3.74
4266 5470 7.549134 TCTTATGCTATGACATGACGTTTTTCT 59.451 33.333 0.00 0.00 0.00 2.52
4278 5482 5.593968 TGACGTTTTTCTTCTGCTGTACTA 58.406 37.500 0.00 0.00 0.00 1.82
4281 5485 5.813672 ACGTTTTTCTTCTGCTGTACTACAA 59.186 36.000 0.00 0.00 0.00 2.41
4386 5590 2.502142 TGGAGATGCAGTTGCTTCAT 57.498 45.000 18.47 7.05 44.66 2.57
4387 5591 2.362736 TGGAGATGCAGTTGCTTCATC 58.637 47.619 18.47 13.25 44.66 2.92
4388 5592 2.290450 TGGAGATGCAGTTGCTTCATCA 60.290 45.455 18.47 13.60 44.66 3.07
4400 5604 4.690184 TGCTTCATCACATCAACACATC 57.310 40.909 0.00 0.00 0.00 3.06
4438 5642 9.725019 TGATACACTCAACAAAGATGATTTACT 57.275 29.630 0.00 0.00 0.00 2.24
4442 5646 7.870954 ACACTCAACAAAGATGATTTACTACGA 59.129 33.333 0.00 0.00 0.00 3.43
4446 5650 8.717821 TCAACAAAGATGATTTACTACGAAAGG 58.282 33.333 0.00 0.00 0.00 3.11
4447 5651 7.611213 ACAAAGATGATTTACTACGAAAGGG 57.389 36.000 0.00 0.00 0.00 3.95
4454 5658 5.244402 TGATTTACTACGAAAGGGTCTGACA 59.756 40.000 10.38 0.00 0.00 3.58
4471 5675 2.103432 TGACACCTCTTCTGCGGTTTAA 59.897 45.455 0.00 0.00 0.00 1.52
4473 5677 3.335579 ACACCTCTTCTGCGGTTTAATC 58.664 45.455 0.00 0.00 0.00 1.75
4474 5678 2.678336 CACCTCTTCTGCGGTTTAATCC 59.322 50.000 0.00 0.00 0.00 3.01
4475 5679 2.304761 ACCTCTTCTGCGGTTTAATCCA 59.695 45.455 3.52 0.00 0.00 3.41
4548 5760 8.184304 TCTAAAAGCCTAGAGGAGATATGAAC 57.816 38.462 0.00 0.00 37.39 3.18
4552 5764 5.710646 AGCCTAGAGGAGATATGAACTGAA 58.289 41.667 0.00 0.00 37.39 3.02
4569 5782 2.165437 CTGAAGACTCGGCTAGCTCTTT 59.835 50.000 15.72 1.18 30.53 2.52
4579 5792 2.706190 GGCTAGCTCTTTATCCCTTCCA 59.294 50.000 15.72 0.00 0.00 3.53
4645 5861 4.039488 ACATGAACATGCAAAGGAACACAT 59.961 37.500 13.71 0.00 42.39 3.21
4657 5873 6.089417 GCAAAGGAACACATACTGCAAATTAC 59.911 38.462 0.00 0.00 0.00 1.89
4665 5881 8.792830 ACACATACTGCAAATTACTGTAAGAT 57.207 30.769 6.40 0.00 37.43 2.40
4752 5968 6.573664 TCACATCTGTTAATTTGTGAAGGG 57.426 37.500 6.03 0.00 43.88 3.95
4753 5969 6.068010 TCACATCTGTTAATTTGTGAAGGGT 58.932 36.000 6.03 0.00 43.88 4.34
4754 5970 6.206634 TCACATCTGTTAATTTGTGAAGGGTC 59.793 38.462 6.03 0.00 43.88 4.46
4755 5971 6.016360 CACATCTGTTAATTTGTGAAGGGTCA 60.016 38.462 0.29 0.00 41.50 4.02
4764 5980 1.148273 TGAAGGGTCACAGTGGTGC 59.852 57.895 0.00 0.00 44.87 5.01
4765 5981 1.148273 GAAGGGTCACAGTGGTGCA 59.852 57.895 0.00 0.00 44.87 4.57
4766 5982 1.152963 AAGGGTCACAGTGGTGCAC 60.153 57.895 8.80 8.80 44.87 4.57
4767 5983 2.594592 GGGTCACAGTGGTGCACC 60.595 66.667 29.67 29.67 44.87 5.01
4768 5984 2.594592 GGTCACAGTGGTGCACCC 60.595 66.667 32.62 22.81 44.87 4.61
4769 5985 2.510906 GTCACAGTGGTGCACCCT 59.489 61.111 32.62 24.62 44.87 4.34
4770 5986 1.893808 GTCACAGTGGTGCACCCTG 60.894 63.158 34.43 34.43 44.87 4.45
4771 5987 3.289834 CACAGTGGTGCACCCTGC 61.290 66.667 35.29 25.48 45.29 4.85
4781 5997 4.335647 CACCCTGCGGCCAGAGTT 62.336 66.667 2.24 0.00 41.77 3.01
4782 5998 4.021925 ACCCTGCGGCCAGAGTTC 62.022 66.667 2.24 0.00 41.77 3.01
4783 5999 4.020617 CCCTGCGGCCAGAGTTCA 62.021 66.667 2.24 0.00 41.77 3.18
4784 6000 2.032528 CCTGCGGCCAGAGTTCAA 59.967 61.111 2.24 0.00 41.77 2.69
4785 6001 1.600636 CCTGCGGCCAGAGTTCAAA 60.601 57.895 2.24 0.00 41.77 2.69
4786 6002 0.962356 CCTGCGGCCAGAGTTCAAAT 60.962 55.000 2.24 0.00 41.77 2.32
4787 6003 0.449388 CTGCGGCCAGAGTTCAAATC 59.551 55.000 2.24 0.00 41.77 2.17
4788 6004 0.960364 TGCGGCCAGAGTTCAAATCC 60.960 55.000 2.24 0.00 0.00 3.01
4789 6005 1.657751 GCGGCCAGAGTTCAAATCCC 61.658 60.000 2.24 0.00 0.00 3.85
4790 6006 1.369091 CGGCCAGAGTTCAAATCCCG 61.369 60.000 2.24 0.00 0.00 5.14
4791 6007 0.322546 GGCCAGAGTTCAAATCCCGT 60.323 55.000 0.00 0.00 0.00 5.28
4792 6008 1.087501 GCCAGAGTTCAAATCCCGTC 58.912 55.000 0.00 0.00 0.00 4.79
4793 6009 1.359848 CCAGAGTTCAAATCCCGTCG 58.640 55.000 0.00 0.00 0.00 5.12
4794 6010 1.359848 CAGAGTTCAAATCCCGTCGG 58.640 55.000 3.60 3.60 0.00 4.79
4795 6011 0.249398 AGAGTTCAAATCCCGTCGGG 59.751 55.000 25.31 25.31 46.11 5.14
4805 6021 3.884900 CCGTCGGGAGCGAATTTT 58.115 55.556 2.34 0.00 34.06 1.82
4806 6022 1.423845 CCGTCGGGAGCGAATTTTG 59.576 57.895 2.34 0.00 34.06 2.44
4807 6023 1.226018 CGTCGGGAGCGAATTTTGC 60.226 57.895 0.00 0.00 0.00 3.68
4808 6024 1.226018 GTCGGGAGCGAATTTTGCG 60.226 57.895 2.98 0.00 37.44 4.85
4809 6025 1.374885 TCGGGAGCGAATTTTGCGA 60.375 52.632 2.98 0.00 37.44 5.10
4810 6026 0.951525 TCGGGAGCGAATTTTGCGAA 60.952 50.000 2.98 0.00 37.44 4.70
4811 6027 0.098728 CGGGAGCGAATTTTGCGAAT 59.901 50.000 2.98 0.00 37.44 3.34
4812 6028 1.467374 CGGGAGCGAATTTTGCGAATT 60.467 47.619 2.98 0.00 37.44 2.17
4813 6029 2.606108 GGGAGCGAATTTTGCGAATTT 58.394 42.857 2.98 0.00 37.44 1.82
4814 6030 2.598637 GGGAGCGAATTTTGCGAATTTC 59.401 45.455 10.17 10.17 37.44 2.17
4815 6031 3.501950 GGAGCGAATTTTGCGAATTTCT 58.498 40.909 15.79 9.07 37.44 2.52
4816 6032 3.301642 GGAGCGAATTTTGCGAATTTCTG 59.698 43.478 15.79 11.56 37.44 3.02
4817 6033 3.244976 AGCGAATTTTGCGAATTTCTGG 58.755 40.909 15.79 6.04 37.44 3.86
4818 6034 2.986479 GCGAATTTTGCGAATTTCTGGT 59.014 40.909 15.79 0.00 0.00 4.00
4819 6035 3.428534 GCGAATTTTGCGAATTTCTGGTT 59.571 39.130 15.79 0.00 0.00 3.67
4820 6036 4.432892 GCGAATTTTGCGAATTTCTGGTTC 60.433 41.667 15.79 1.41 0.00 3.62
4821 6037 4.089923 CGAATTTTGCGAATTTCTGGTTCC 59.910 41.667 15.79 0.00 0.00 3.62
4822 6038 4.871933 ATTTTGCGAATTTCTGGTTCCT 57.128 36.364 0.00 0.00 0.00 3.36
4823 6039 3.915437 TTTGCGAATTTCTGGTTCCTC 57.085 42.857 0.00 0.00 0.00 3.71
4824 6040 2.559698 TGCGAATTTCTGGTTCCTCA 57.440 45.000 0.00 0.00 0.00 3.86
4825 6041 2.151202 TGCGAATTTCTGGTTCCTCAC 58.849 47.619 0.00 0.00 0.00 3.51
4827 6043 2.084546 CGAATTTCTGGTTCCTCACCC 58.915 52.381 0.00 0.00 46.68 4.61
4828 6044 2.084546 GAATTTCTGGTTCCTCACCCG 58.915 52.381 0.00 0.00 46.68 5.28
4829 6045 0.328258 ATTTCTGGTTCCTCACCCGG 59.672 55.000 0.00 0.00 46.68 5.73
4830 6046 1.774894 TTTCTGGTTCCTCACCCGGG 61.775 60.000 22.25 22.25 46.68 5.73
4831 6047 2.928396 CTGGTTCCTCACCCGGGT 60.928 66.667 24.16 24.16 46.68 5.28
4832 6048 3.246112 TGGTTCCTCACCCGGGTG 61.246 66.667 42.62 42.62 46.68 4.61
4833 6049 4.029809 GGTTCCTCACCCGGGTGG 62.030 72.222 45.13 35.15 45.43 4.61
4843 6059 3.721868 CCGGGTGGGCTTCTTCTA 58.278 61.111 0.00 0.00 0.00 2.10
4844 6060 2.221918 CCGGGTGGGCTTCTTCTAT 58.778 57.895 0.00 0.00 0.00 1.98
4845 6061 1.420430 CCGGGTGGGCTTCTTCTATA 58.580 55.000 0.00 0.00 0.00 1.31
4846 6062 1.766496 CCGGGTGGGCTTCTTCTATAA 59.234 52.381 0.00 0.00 0.00 0.98
4847 6063 2.171870 CCGGGTGGGCTTCTTCTATAAA 59.828 50.000 0.00 0.00 0.00 1.40
4848 6064 3.371166 CCGGGTGGGCTTCTTCTATAAAA 60.371 47.826 0.00 0.00 0.00 1.52
4849 6065 4.266714 CGGGTGGGCTTCTTCTATAAAAA 58.733 43.478 0.00 0.00 0.00 1.94
4850 6066 4.887655 CGGGTGGGCTTCTTCTATAAAAAT 59.112 41.667 0.00 0.00 0.00 1.82
4851 6067 6.059484 CGGGTGGGCTTCTTCTATAAAAATA 58.941 40.000 0.00 0.00 0.00 1.40
4852 6068 6.715264 CGGGTGGGCTTCTTCTATAAAAATAT 59.285 38.462 0.00 0.00 0.00 1.28
4853 6069 7.308589 CGGGTGGGCTTCTTCTATAAAAATATG 60.309 40.741 0.00 0.00 0.00 1.78
4854 6070 7.505923 GGGTGGGCTTCTTCTATAAAAATATGT 59.494 37.037 0.00 0.00 0.00 2.29
4855 6071 8.568794 GGTGGGCTTCTTCTATAAAAATATGTC 58.431 37.037 0.00 0.00 0.00 3.06
4856 6072 8.568794 GTGGGCTTCTTCTATAAAAATATGTCC 58.431 37.037 0.00 0.00 0.00 4.02
4857 6073 8.502738 TGGGCTTCTTCTATAAAAATATGTCCT 58.497 33.333 0.00 0.00 0.00 3.85
4858 6074 8.787852 GGGCTTCTTCTATAAAAATATGTCCTG 58.212 37.037 0.00 0.00 0.00 3.86
4859 6075 8.787852 GGCTTCTTCTATAAAAATATGTCCTGG 58.212 37.037 0.00 0.00 0.00 4.45
4860 6076 8.787852 GCTTCTTCTATAAAAATATGTCCTGGG 58.212 37.037 0.00 0.00 0.00 4.45
4861 6077 9.853177 CTTCTTCTATAAAAATATGTCCTGGGT 57.147 33.333 0.00 0.00 0.00 4.51
4862 6078 9.627123 TTCTTCTATAAAAATATGTCCTGGGTG 57.373 33.333 0.00 0.00 0.00 4.61
4863 6079 7.719633 TCTTCTATAAAAATATGTCCTGGGTGC 59.280 37.037 0.00 0.00 0.00 5.01
4864 6080 7.149202 TCTATAAAAATATGTCCTGGGTGCT 57.851 36.000 0.00 0.00 0.00 4.40
4865 6081 8.270137 TCTATAAAAATATGTCCTGGGTGCTA 57.730 34.615 0.00 0.00 0.00 3.49
4866 6082 8.375506 TCTATAAAAATATGTCCTGGGTGCTAG 58.624 37.037 0.00 0.00 0.00 3.42
4867 6083 4.862641 AAAATATGTCCTGGGTGCTAGT 57.137 40.909 0.00 0.00 0.00 2.57
4868 6084 3.845781 AATATGTCCTGGGTGCTAGTG 57.154 47.619 0.00 0.00 0.00 2.74
4869 6085 0.830648 TATGTCCTGGGTGCTAGTGC 59.169 55.000 0.00 0.00 40.20 4.40
4870 6086 1.915078 ATGTCCTGGGTGCTAGTGCC 61.915 60.000 0.00 0.00 38.71 5.01
4871 6087 3.009115 TCCTGGGTGCTAGTGCCC 61.009 66.667 14.48 14.48 45.04 5.36
4875 6091 2.124151 GGGTGCTAGTGCCCATGG 60.124 66.667 15.91 4.14 44.23 3.66
4876 6092 2.679342 GGGTGCTAGTGCCCATGGA 61.679 63.158 15.22 0.00 44.23 3.41
4877 6093 1.533711 GGTGCTAGTGCCCATGGAT 59.466 57.895 15.22 0.00 38.71 3.41
4878 6094 0.536006 GGTGCTAGTGCCCATGGATC 60.536 60.000 15.22 5.06 38.71 3.36
4879 6095 0.471617 GTGCTAGTGCCCATGGATCT 59.528 55.000 15.22 10.66 38.71 2.75
4880 6096 0.761187 TGCTAGTGCCCATGGATCTC 59.239 55.000 15.22 5.64 38.71 2.75
4881 6097 0.761187 GCTAGTGCCCATGGATCTCA 59.239 55.000 15.22 2.44 0.00 3.27
4882 6098 1.350351 GCTAGTGCCCATGGATCTCAT 59.650 52.381 15.22 0.00 36.31 2.90
4883 6099 2.224719 GCTAGTGCCCATGGATCTCATT 60.225 50.000 15.22 5.04 32.92 2.57
4884 6100 3.749954 GCTAGTGCCCATGGATCTCATTT 60.750 47.826 15.22 1.75 32.92 2.32
4885 6101 3.393426 AGTGCCCATGGATCTCATTTT 57.607 42.857 15.22 0.00 32.92 1.82
4886 6102 4.524802 AGTGCCCATGGATCTCATTTTA 57.475 40.909 15.22 0.00 32.92 1.52
4887 6103 4.870636 AGTGCCCATGGATCTCATTTTAA 58.129 39.130 15.22 0.00 32.92 1.52
4930 6146 2.345991 GCAGGGTAGCGGTTGACA 59.654 61.111 0.00 0.00 0.00 3.58
4933 6149 1.086696 CAGGGTAGCGGTTGACATTG 58.913 55.000 0.00 0.00 0.00 2.82
4946 6165 4.440802 GGTTGACATTGTTGCCTTGTAACA 60.441 41.667 0.00 0.00 36.45 2.41
4949 6168 2.287547 ACATTGTTGCCTTGTAACAGCG 60.288 45.455 0.00 0.00 39.08 5.18
4968 6187 2.189342 CGCAAGCCGTTTTCTTTTTGA 58.811 42.857 0.00 0.00 0.00 2.69
4975 6194 4.875536 AGCCGTTTTCTTTTTGAAATTGCT 59.124 33.333 0.00 0.00 43.34 3.91
4995 6232 3.374058 GCTAAAACTAAGCTGGAATGCGA 59.626 43.478 0.00 0.00 37.01 5.10
4996 6233 3.831715 AAAACTAAGCTGGAATGCGAC 57.168 42.857 0.00 0.00 38.13 5.19
5039 6276 0.179174 CGGCCCGTTATCTGTTTTGC 60.179 55.000 0.00 0.00 0.00 3.68
5047 6284 0.878416 TATCTGTTTTGCGTGTGGCC 59.122 50.000 0.00 0.00 42.61 5.36
5052 6289 2.130426 TTTTGCGTGTGGCCATGGT 61.130 52.632 9.72 0.00 42.61 3.55
5063 6300 1.310933 GGCCATGGTCTGAGCTTGTG 61.311 60.000 14.67 11.94 0.00 3.33
5091 6328 7.985634 TTTGTTGCTGTGTCTAATTCTTTTC 57.014 32.000 0.00 0.00 0.00 2.29
5099 6336 5.050363 TGTGTCTAATTCTTTTCGCAGTGTC 60.050 40.000 0.00 0.00 0.00 3.67
5100 6337 4.451096 TGTCTAATTCTTTTCGCAGTGTCC 59.549 41.667 0.00 0.00 0.00 4.02
5101 6338 2.969443 AATTCTTTTCGCAGTGTCCG 57.031 45.000 0.00 0.00 0.00 4.79
5139 6376 6.348621 TGTTTGTACGAGGAACAAAAGTAC 57.651 37.500 3.19 0.00 45.56 2.73
5140 6377 6.108015 TGTTTGTACGAGGAACAAAAGTACT 58.892 36.000 3.19 0.00 45.56 2.73
5141 6378 6.256321 TGTTTGTACGAGGAACAAAAGTACTC 59.744 38.462 0.00 0.00 45.56 2.59
5142 6379 4.874970 TGTACGAGGAACAAAAGTACTCC 58.125 43.478 0.00 0.00 38.63 3.85
5143 6380 3.397849 ACGAGGAACAAAAGTACTCCC 57.602 47.619 0.00 0.00 0.00 4.30
5144 6381 2.970640 ACGAGGAACAAAAGTACTCCCT 59.029 45.455 0.00 0.00 0.00 4.20
5145 6382 3.390311 ACGAGGAACAAAAGTACTCCCTT 59.610 43.478 0.00 0.00 0.00 3.95
5146 6383 3.995048 CGAGGAACAAAAGTACTCCCTTC 59.005 47.826 0.00 0.00 0.00 3.46
5147 6384 3.995048 GAGGAACAAAAGTACTCCCTTCG 59.005 47.826 0.00 0.00 0.00 3.79
5148 6385 3.390311 AGGAACAAAAGTACTCCCTTCGT 59.610 43.478 0.00 0.00 0.00 3.85
5149 6386 3.744942 GGAACAAAAGTACTCCCTTCGTC 59.255 47.826 0.00 0.00 0.00 4.20
5150 6387 3.397849 ACAAAAGTACTCCCTTCGTCC 57.602 47.619 0.00 0.00 0.00 4.79
5151 6388 2.288640 ACAAAAGTACTCCCTTCGTCCG 60.289 50.000 0.00 0.00 0.00 4.79
5152 6389 1.915141 AAAGTACTCCCTTCGTCCGA 58.085 50.000 0.00 0.00 0.00 4.55
5153 6390 2.140839 AAGTACTCCCTTCGTCCGAT 57.859 50.000 0.00 0.00 0.00 4.18
5154 6391 3.287867 AAGTACTCCCTTCGTCCGATA 57.712 47.619 0.00 0.00 0.00 2.92
5155 6392 3.287867 AGTACTCCCTTCGTCCGATAA 57.712 47.619 0.00 0.00 0.00 1.75
5156 6393 3.624777 AGTACTCCCTTCGTCCGATAAA 58.375 45.455 0.00 0.00 0.00 1.40
5157 6394 4.019174 AGTACTCCCTTCGTCCGATAAAA 58.981 43.478 0.00 0.00 0.00 1.52
5158 6395 3.521947 ACTCCCTTCGTCCGATAAAAG 57.478 47.619 0.00 0.00 0.00 2.27
5159 6396 2.830321 ACTCCCTTCGTCCGATAAAAGT 59.170 45.455 0.00 0.00 0.00 2.66
5160 6397 3.260128 ACTCCCTTCGTCCGATAAAAGTT 59.740 43.478 0.00 0.00 0.00 2.66
5161 6398 3.592059 TCCCTTCGTCCGATAAAAGTTG 58.408 45.455 0.00 0.00 0.00 3.16
5162 6399 3.007182 TCCCTTCGTCCGATAAAAGTTGT 59.993 43.478 0.00 0.00 0.00 3.32
5163 6400 3.370061 CCCTTCGTCCGATAAAAGTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
5164 6401 3.370061 CCTTCGTCCGATAAAAGTTGTCC 59.630 47.826 0.00 0.00 0.00 4.02
5165 6402 2.963432 TCGTCCGATAAAAGTTGTCCC 58.037 47.619 0.00 0.00 0.00 4.46
5166 6403 2.004733 CGTCCGATAAAAGTTGTCCCC 58.995 52.381 0.00 0.00 0.00 4.81
5167 6404 2.004733 GTCCGATAAAAGTTGTCCCCG 58.995 52.381 0.00 0.00 0.00 5.73
5168 6405 1.901159 TCCGATAAAAGTTGTCCCCGA 59.099 47.619 0.00 0.00 0.00 5.14
5169 6406 2.093869 TCCGATAAAAGTTGTCCCCGAG 60.094 50.000 0.00 0.00 0.00 4.63
5170 6407 2.277084 CGATAAAAGTTGTCCCCGAGG 58.723 52.381 0.00 0.00 0.00 4.63
5171 6408 2.354403 CGATAAAAGTTGTCCCCGAGGT 60.354 50.000 0.00 0.00 0.00 3.85
5172 6409 2.845363 TAAAAGTTGTCCCCGAGGTC 57.155 50.000 0.00 0.00 0.00 3.85
5173 6410 1.137697 AAAAGTTGTCCCCGAGGTCT 58.862 50.000 0.00 0.00 0.00 3.85
5174 6411 1.137697 AAAGTTGTCCCCGAGGTCTT 58.862 50.000 0.00 0.00 0.00 3.01
5175 6412 1.137697 AAGTTGTCCCCGAGGTCTTT 58.862 50.000 0.00 0.00 0.00 2.52
5176 6413 1.137697 AGTTGTCCCCGAGGTCTTTT 58.862 50.000 0.00 0.00 0.00 2.27
5177 6414 1.493446 AGTTGTCCCCGAGGTCTTTTT 59.507 47.619 0.00 0.00 0.00 1.94
5194 6431 2.525105 TTTTCAGGAATACCCCCAGC 57.475 50.000 0.00 0.00 36.73 4.85
5195 6432 0.254747 TTTCAGGAATACCCCCAGCG 59.745 55.000 0.00 0.00 36.73 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.792830 TTGCTCTAGTGCTTCACTTATATTTT 57.207 30.769 17.08 0.00 42.59 1.82
4 5 7.492669 GTCATTTGCTCTAGTGCTTCACTTATA 59.507 37.037 17.08 0.00 42.59 0.98
6 7 5.639506 GTCATTTGCTCTAGTGCTTCACTTA 59.360 40.000 17.08 0.00 42.59 2.24
7 8 4.453819 GTCATTTGCTCTAGTGCTTCACTT 59.546 41.667 17.08 0.00 42.59 3.16
9 10 3.748048 TGTCATTTGCTCTAGTGCTTCAC 59.252 43.478 17.08 7.79 34.10 3.18
10 11 4.006780 TGTCATTTGCTCTAGTGCTTCA 57.993 40.909 17.08 2.54 0.00 3.02
11 12 5.049129 AGTTTGTCATTTGCTCTAGTGCTTC 60.049 40.000 17.08 3.39 0.00 3.86
12 13 4.823989 AGTTTGTCATTTGCTCTAGTGCTT 59.176 37.500 17.08 0.75 0.00 3.91
13 14 4.392940 AGTTTGTCATTTGCTCTAGTGCT 58.607 39.130 17.08 0.00 0.00 4.40
14 15 4.756084 AGTTTGTCATTTGCTCTAGTGC 57.244 40.909 9.86 9.86 0.00 4.40
15 16 6.091441 GGAGTAGTTTGTCATTTGCTCTAGTG 59.909 42.308 0.00 0.00 0.00 2.74
16 17 6.166982 GGAGTAGTTTGTCATTTGCTCTAGT 58.833 40.000 0.00 0.00 0.00 2.57
17 18 6.166279 TGGAGTAGTTTGTCATTTGCTCTAG 58.834 40.000 0.00 0.00 0.00 2.43
18 19 6.109156 TGGAGTAGTTTGTCATTTGCTCTA 57.891 37.500 0.00 0.00 0.00 2.43
19 20 4.973168 TGGAGTAGTTTGTCATTTGCTCT 58.027 39.130 0.00 0.00 0.00 4.09
20 21 5.689383 TTGGAGTAGTTTGTCATTTGCTC 57.311 39.130 0.00 0.00 0.00 4.26
21 22 6.321181 TCTTTTGGAGTAGTTTGTCATTTGCT 59.679 34.615 0.00 0.00 0.00 3.91
22 23 6.503524 TCTTTTGGAGTAGTTTGTCATTTGC 58.496 36.000 0.00 0.00 0.00 3.68
80 81 9.244292 TGTTAGAGAGTCTTCACATAGTTACAT 57.756 33.333 0.00 0.00 0.00 2.29
81 82 8.631480 TGTTAGAGAGTCTTCACATAGTTACA 57.369 34.615 0.00 0.00 0.00 2.41
122 123 9.255304 GCTTGTTGTTTGAATAAAATACCAAGA 57.745 29.630 8.35 0.00 34.05 3.02
123 124 9.039870 TGCTTGTTGTTTGAATAAAATACCAAG 57.960 29.630 0.00 0.00 34.63 3.61
124 125 8.948631 TGCTTGTTGTTTGAATAAAATACCAA 57.051 26.923 0.00 0.00 0.00 3.67
125 126 8.948631 TTGCTTGTTGTTTGAATAAAATACCA 57.051 26.923 0.00 0.00 0.00 3.25
126 127 9.862585 CTTTGCTTGTTGTTTGAATAAAATACC 57.137 29.630 0.00 0.00 0.00 2.73
127 128 9.368921 GCTTTGCTTGTTGTTTGAATAAAATAC 57.631 29.630 0.00 0.00 0.00 1.89
128 129 9.102757 TGCTTTGCTTGTTGTTTGAATAAAATA 57.897 25.926 0.00 0.00 0.00 1.40
129 130 7.983307 TGCTTTGCTTGTTGTTTGAATAAAAT 58.017 26.923 0.00 0.00 0.00 1.82
130 131 7.369803 TGCTTTGCTTGTTGTTTGAATAAAA 57.630 28.000 0.00 0.00 0.00 1.52
131 132 6.974932 TGCTTTGCTTGTTGTTTGAATAAA 57.025 29.167 0.00 0.00 0.00 1.40
132 133 6.974932 TTGCTTTGCTTGTTGTTTGAATAA 57.025 29.167 0.00 0.00 0.00 1.40
133 134 6.974932 TTTGCTTTGCTTGTTGTTTGAATA 57.025 29.167 0.00 0.00 0.00 1.75
134 135 5.876612 TTTGCTTTGCTTGTTGTTTGAAT 57.123 30.435 0.00 0.00 0.00 2.57
135 136 5.679734 TTTTGCTTTGCTTGTTGTTTGAA 57.320 30.435 0.00 0.00 0.00 2.69
136 137 5.876612 ATTTTGCTTTGCTTGTTGTTTGA 57.123 30.435 0.00 0.00 0.00 2.69
137 138 8.364482 GTTTTATTTTGCTTTGCTTGTTGTTTG 58.636 29.630 0.00 0.00 0.00 2.93
138 139 8.078596 TGTTTTATTTTGCTTTGCTTGTTGTTT 58.921 25.926 0.00 0.00 0.00 2.83
139 140 7.588512 TGTTTTATTTTGCTTTGCTTGTTGTT 58.411 26.923 0.00 0.00 0.00 2.83
140 141 7.138692 TGTTTTATTTTGCTTTGCTTGTTGT 57.861 28.000 0.00 0.00 0.00 3.32
141 142 8.445193 TTTGTTTTATTTTGCTTTGCTTGTTG 57.555 26.923 0.00 0.00 0.00 3.33
142 143 9.636879 ATTTTGTTTTATTTTGCTTTGCTTGTT 57.363 22.222 0.00 0.00 0.00 2.83
143 144 9.074443 CATTTTGTTTTATTTTGCTTTGCTTGT 57.926 25.926 0.00 0.00 0.00 3.16
144 145 9.286946 TCATTTTGTTTTATTTTGCTTTGCTTG 57.713 25.926 0.00 0.00 0.00 4.01
145 146 9.288124 GTCATTTTGTTTTATTTTGCTTTGCTT 57.712 25.926 0.00 0.00 0.00 3.91
146 147 7.639461 CGTCATTTTGTTTTATTTTGCTTTGCT 59.361 29.630 0.00 0.00 0.00 3.91
147 148 7.563119 GCGTCATTTTGTTTTATTTTGCTTTGC 60.563 33.333 0.00 0.00 0.00 3.68
148 149 7.639461 AGCGTCATTTTGTTTTATTTTGCTTTG 59.361 29.630 0.00 0.00 0.00 2.77
149 150 7.693020 AGCGTCATTTTGTTTTATTTTGCTTT 58.307 26.923 0.00 0.00 0.00 3.51
150 151 7.245419 AGCGTCATTTTGTTTTATTTTGCTT 57.755 28.000 0.00 0.00 0.00 3.91
151 152 6.073819 GGAGCGTCATTTTGTTTTATTTTGCT 60.074 34.615 0.00 0.00 0.00 3.91
152 153 6.070829 GGAGCGTCATTTTGTTTTATTTTGC 58.929 36.000 0.00 0.00 0.00 3.68
153 154 7.171447 TGGAGCGTCATTTTGTTTTATTTTG 57.829 32.000 0.00 0.00 0.00 2.44
154 155 7.518211 GCTTGGAGCGTCATTTTGTTTTATTTT 60.518 33.333 0.00 0.00 0.00 1.82
155 156 6.073819 GCTTGGAGCGTCATTTTGTTTTATTT 60.074 34.615 0.00 0.00 0.00 1.40
156 157 5.405269 GCTTGGAGCGTCATTTTGTTTTATT 59.595 36.000 0.00 0.00 0.00 1.40
157 158 4.923281 GCTTGGAGCGTCATTTTGTTTTAT 59.077 37.500 0.00 0.00 0.00 1.40
158 159 4.202060 TGCTTGGAGCGTCATTTTGTTTTA 60.202 37.500 0.00 0.00 46.26 1.52
159 160 3.123050 GCTTGGAGCGTCATTTTGTTTT 58.877 40.909 0.00 0.00 0.00 2.43
160 161 2.100584 TGCTTGGAGCGTCATTTTGTTT 59.899 40.909 0.00 0.00 46.26 2.83
161 162 1.680735 TGCTTGGAGCGTCATTTTGTT 59.319 42.857 0.00 0.00 46.26 2.83
162 163 1.317613 TGCTTGGAGCGTCATTTTGT 58.682 45.000 0.00 0.00 46.26 2.83
163 164 2.420628 TTGCTTGGAGCGTCATTTTG 57.579 45.000 0.00 0.00 46.26 2.44
164 165 3.123050 GTTTTGCTTGGAGCGTCATTTT 58.877 40.909 0.00 0.00 46.26 1.82
165 166 2.100584 TGTTTTGCTTGGAGCGTCATTT 59.899 40.909 0.00 0.00 46.26 2.32
166 167 1.680735 TGTTTTGCTTGGAGCGTCATT 59.319 42.857 0.00 0.00 46.26 2.57
167 168 1.001378 GTGTTTTGCTTGGAGCGTCAT 60.001 47.619 0.00 0.00 46.26 3.06
168 169 0.380378 GTGTTTTGCTTGGAGCGTCA 59.620 50.000 0.00 0.00 46.26 4.35
169 170 0.380378 TGTGTTTTGCTTGGAGCGTC 59.620 50.000 0.00 0.00 46.26 5.19
170 171 1.032014 ATGTGTTTTGCTTGGAGCGT 58.968 45.000 0.00 0.00 46.26 5.07
171 172 2.987413 TATGTGTTTTGCTTGGAGCG 57.013 45.000 0.00 0.00 46.26 5.03
172 173 4.439305 TGATATGTGTTTTGCTTGGAGC 57.561 40.909 0.00 0.00 42.82 4.70
173 174 5.957798 ACATGATATGTGTTTTGCTTGGAG 58.042 37.500 0.00 0.00 43.01 3.86
174 175 5.981088 ACATGATATGTGTTTTGCTTGGA 57.019 34.783 0.00 0.00 43.01 3.53
191 192 9.066892 GGAGCTATATTTTTATTCACCACATGA 57.933 33.333 0.00 0.00 34.65 3.07
192 193 8.849168 TGGAGCTATATTTTTATTCACCACATG 58.151 33.333 0.00 0.00 0.00 3.21
193 194 8.995027 TGGAGCTATATTTTTATTCACCACAT 57.005 30.769 0.00 0.00 0.00 3.21
194 195 8.815565 TTGGAGCTATATTTTTATTCACCACA 57.184 30.769 0.00 0.00 0.00 4.17
195 196 8.903820 ACTTGGAGCTATATTTTTATTCACCAC 58.096 33.333 0.00 0.00 0.00 4.16
205 206 9.106070 CGGTAACTTTACTTGGAGCTATATTTT 57.894 33.333 0.00 0.00 34.16 1.82
206 207 8.480501 TCGGTAACTTTACTTGGAGCTATATTT 58.519 33.333 0.00 0.00 34.16 1.40
207 208 8.015185 TCGGTAACTTTACTTGGAGCTATATT 57.985 34.615 0.00 0.00 34.16 1.28
208 209 7.592885 TCGGTAACTTTACTTGGAGCTATAT 57.407 36.000 0.00 0.00 34.16 0.86
209 210 7.592885 ATCGGTAACTTTACTTGGAGCTATA 57.407 36.000 0.00 0.00 34.16 1.31
210 211 5.927281 TCGGTAACTTTACTTGGAGCTAT 57.073 39.130 0.00 0.00 34.16 2.97
211 212 5.927281 ATCGGTAACTTTACTTGGAGCTA 57.073 39.130 0.00 0.00 34.16 3.32
212 213 4.820894 ATCGGTAACTTTACTTGGAGCT 57.179 40.909 0.00 0.00 34.16 4.09
213 214 5.176592 AGAATCGGTAACTTTACTTGGAGC 58.823 41.667 0.00 0.00 34.16 4.70
214 215 7.097834 AGAAGAATCGGTAACTTTACTTGGAG 58.902 38.462 0.00 0.00 34.16 3.86
215 216 7.001099 AGAAGAATCGGTAACTTTACTTGGA 57.999 36.000 0.00 0.00 34.16 3.53
216 217 7.411588 CGAAGAAGAATCGGTAACTTTACTTGG 60.412 40.741 0.00 0.00 36.68 3.61
217 218 7.445836 CGAAGAAGAATCGGTAACTTTACTTG 58.554 38.462 0.00 0.00 36.68 3.16
218 219 7.578169 CGAAGAAGAATCGGTAACTTTACTT 57.422 36.000 0.00 0.00 36.68 2.24
230 231 1.090052 GTGGCCCCGAAGAAGAATCG 61.090 60.000 0.00 0.00 39.92 3.34
231 232 1.090052 CGTGGCCCCGAAGAAGAATC 61.090 60.000 0.00 0.00 0.00 2.52
232 233 1.078426 CGTGGCCCCGAAGAAGAAT 60.078 57.895 0.00 0.00 0.00 2.40
233 234 2.211410 TCGTGGCCCCGAAGAAGAA 61.211 57.895 8.22 0.00 33.15 2.52
234 235 2.602267 TCGTGGCCCCGAAGAAGA 60.602 61.111 8.22 0.00 33.15 2.87
235 236 2.434359 GTCGTGGCCCCGAAGAAG 60.434 66.667 13.24 0.00 38.80 2.85
236 237 4.367023 CGTCGTGGCCCCGAAGAA 62.367 66.667 17.86 0.00 38.37 2.52
238 239 4.796231 CTCGTCGTGGCCCCGAAG 62.796 72.222 13.24 15.23 38.80 3.79
246 247 3.691342 TGGAAGCCCTCGTCGTGG 61.691 66.667 6.36 6.36 0.00 4.94
247 248 2.432628 GTGGAAGCCCTCGTCGTG 60.433 66.667 0.00 0.00 0.00 4.35
248 249 2.915659 TGTGGAAGCCCTCGTCGT 60.916 61.111 0.00 0.00 0.00 4.34
249 250 2.125912 CTGTGGAAGCCCTCGTCG 60.126 66.667 0.00 0.00 0.00 5.12
260 261 3.727258 CCCCATTCCCGCTGTGGA 61.727 66.667 9.25 0.00 42.00 4.02
282 283 2.363925 GACACGCCCTACCCCTCT 60.364 66.667 0.00 0.00 0.00 3.69
295 296 1.227380 CTAGAGCCATGGCCGACAC 60.227 63.158 33.14 18.28 43.17 3.67
301 302 3.106986 TTCCGCCTAGAGCCATGGC 62.107 63.158 30.12 30.12 42.94 4.40
322 323 3.336391 TCCCATCATTCCTCCCTCAAAAA 59.664 43.478 0.00 0.00 0.00 1.94
353 354 2.742372 GTCAATCGGTGGCGCACT 60.742 61.111 10.83 0.00 34.40 4.40
374 375 3.691342 CCGTGGCGTCCTTCCTGA 61.691 66.667 0.00 0.00 0.00 3.86
407 408 2.938838 CCCAGGTTTGTGTCCTTACAA 58.061 47.619 0.00 0.00 37.36 2.41
408 409 1.477923 GCCCAGGTTTGTGTCCTTACA 60.478 52.381 0.00 0.00 32.37 2.41
412 413 1.943730 TTGGCCCAGGTTTGTGTCCT 61.944 55.000 0.00 0.00 35.45 3.85
413 414 1.045911 TTTGGCCCAGGTTTGTGTCC 61.046 55.000 0.00 0.00 0.00 4.02
436 437 6.462909 GGTTCATTTGGACTCATTTCCTGTTT 60.463 38.462 0.00 0.00 36.51 2.83
461 462 3.059884 ACGAATGCATATCCGTTGCTAG 58.940 45.455 13.61 0.00 40.77 3.42
464 465 2.755836 AACGAATGCATATCCGTTGC 57.244 45.000 24.07 0.00 42.61 4.17
465 466 2.783284 GCAAACGAATGCATATCCGTTG 59.217 45.455 24.86 20.34 45.70 4.10
469 470 2.755836 ACGCAAACGAATGCATATCC 57.244 45.000 15.32 0.00 46.76 2.59
509 511 0.248907 CATCCGATTACGTCCGCACT 60.249 55.000 0.00 0.00 37.88 4.40
511 513 1.590525 GCATCCGATTACGTCCGCA 60.591 57.895 0.00 0.00 37.88 5.69
512 514 2.645510 CGCATCCGATTACGTCCGC 61.646 63.158 0.00 0.00 37.88 5.54
539 541 1.372997 CATATTCGCGGACGGAGGG 60.373 63.158 6.13 0.00 40.63 4.30
625 888 9.778993 GACATACCAATTTGATGTCATATATGC 57.221 33.333 18.98 4.27 45.74 3.14
687 950 7.007099 CGATTTTATTCGGAAAAGTAGCAACAC 59.993 37.037 0.00 0.00 35.50 3.32
701 964 8.667987 TTGAAACTTTGATCGATTTTATTCGG 57.332 30.769 0.00 0.00 39.56 4.30
729 992 9.598517 ACATCTTGCTTTTGTCTCAAATTAAAA 57.401 25.926 0.00 0.00 0.00 1.52
733 996 7.649306 GTGTACATCTTGCTTTTGTCTCAAATT 59.351 33.333 0.00 0.00 0.00 1.82
735 998 6.318648 AGTGTACATCTTGCTTTTGTCTCAAA 59.681 34.615 0.00 0.00 0.00 2.69
772 1425 2.110578 GGCATTTAGGGCAACTCCAAT 58.889 47.619 0.00 0.00 36.21 3.16
815 1468 1.047739 CGTCACCGAAACAGTACGTC 58.952 55.000 0.00 0.00 35.63 4.34
950 1606 3.993081 GCGATGGAAGGAAGATAGATGTG 59.007 47.826 0.00 0.00 0.00 3.21
1572 2228 2.119495 CCCCAGTATCAGGCAGTAACT 58.881 52.381 0.00 0.00 0.00 2.24
1645 2301 0.856641 TGCGTTGCACTCGTAAGTTC 59.143 50.000 11.22 0.00 31.71 3.01
1653 2309 2.743928 CCTCCCTGCGTTGCACTC 60.744 66.667 0.00 0.00 33.79 3.51
1789 2446 4.872691 ACTTCATAAGCCACAATCTTCTCG 59.127 41.667 0.00 0.00 0.00 4.04
1822 2479 6.091169 GCACATTGAACAATTTAATGGTGAGG 59.909 38.462 13.58 0.00 36.41 3.86
2215 2880 9.804758 AGTTACTAAGAGATCTAAAAACCATCG 57.195 33.333 0.00 0.00 0.00 3.84
2554 3228 1.068748 TCAGTTCGTAGGTGCGAGTTC 60.069 52.381 0.00 0.00 42.10 3.01
3047 4212 3.740321 TCAAGTGAAATTCGCCATTTTGC 59.260 39.130 2.56 0.00 35.02 3.68
3097 4262 5.532557 AGTTTTTGAGAAAAGGCTACATGC 58.467 37.500 0.00 0.00 35.53 4.06
3176 4342 5.221303 CCCACTTTCTTCAGCAATTCAAAGA 60.221 40.000 0.00 0.00 0.00 2.52
3450 4620 6.726299 TGGTAACATTCCCAAATTCCAATGTA 59.274 34.615 0.00 0.00 46.17 2.29
3512 4683 3.242543 GCTTCTGCAATTGAGATGTACCG 60.243 47.826 10.34 0.00 39.41 4.02
3515 4686 4.633126 GTCAGCTTCTGCAATTGAGATGTA 59.367 41.667 10.34 0.00 42.74 2.29
3520 4691 2.414293 GCTGTCAGCTTCTGCAATTGAG 60.414 50.000 17.89 4.15 42.74 3.02
3813 4992 6.368791 TCATACAGAGAAATGCAACAGTACAC 59.631 38.462 0.00 0.00 0.00 2.90
3825 5022 5.574188 AGCCCAAAGTTCATACAGAGAAAT 58.426 37.500 0.00 0.00 0.00 2.17
3884 5081 3.747099 ACGTAATGCTCACTGAATTGC 57.253 42.857 0.00 0.00 0.00 3.56
3895 5092 3.432252 GTGTTCAGCTGTTACGTAATGCT 59.568 43.478 23.81 23.81 0.00 3.79
3919 5116 8.220755 TCAACCATCTACCATACAATAAAAGC 57.779 34.615 0.00 0.00 0.00 3.51
3928 5125 9.262358 GTTTATTCTCTCAACCATCTACCATAC 57.738 37.037 0.00 0.00 0.00 2.39
4079 5278 1.813786 AGAGAAGCTAGTGTCCGTGAC 59.186 52.381 0.00 0.00 0.00 3.67
4107 5306 9.224267 CTATATTCTCCAACCTGAACATATTGG 57.776 37.037 9.52 9.52 42.55 3.16
4181 5380 5.338381 CCTCAACATGTTAGGAAAGGCTAGA 60.338 44.000 20.66 7.24 31.64 2.43
4189 5388 5.499004 AGCTTACCTCAACATGTTAGGAA 57.501 39.130 27.08 15.95 34.34 3.36
4212 5415 1.350684 TCTCATACCAGCCAAGCACAA 59.649 47.619 0.00 0.00 0.00 3.33
4266 5470 7.490079 CGGTAATAACATTGTAGTACAGCAGAA 59.510 37.037 2.68 0.00 0.00 3.02
4278 5482 6.912082 GGTAAAACACCGGTAATAACATTGT 58.088 36.000 6.87 0.00 37.63 2.71
4322 5526 7.689446 TCCAGAATATCTCAGTAAGGATACG 57.311 40.000 0.00 0.00 46.39 3.06
4367 5571 2.290450 TGATGAAGCAACTGCATCTCCA 60.290 45.455 15.02 3.84 44.60 3.86
4386 5590 4.864247 CACAGATACGATGTGTTGATGTGA 59.136 41.667 0.00 0.00 42.47 3.58
4387 5591 5.134978 CACAGATACGATGTGTTGATGTG 57.865 43.478 0.00 0.00 42.47 3.21
4424 5628 7.549488 AGACCCTTTCGTAGTAAATCATCTTTG 59.451 37.037 0.00 0.00 0.00 2.77
4425 5629 7.549488 CAGACCCTTTCGTAGTAAATCATCTTT 59.451 37.037 0.00 0.00 0.00 2.52
4446 5650 0.389166 CGCAGAAGAGGTGTCAGACC 60.389 60.000 0.00 0.00 46.58 3.85
4447 5651 0.389166 CCGCAGAAGAGGTGTCAGAC 60.389 60.000 0.00 0.00 0.00 3.51
4471 5675 3.456380 AACTAAACATGTGCCCTGGAT 57.544 42.857 0.00 0.00 0.00 3.41
4473 5677 2.029110 CCAAACTAAACATGTGCCCTGG 60.029 50.000 0.00 0.00 0.00 4.45
4474 5678 2.627699 ACCAAACTAAACATGTGCCCTG 59.372 45.455 0.00 0.00 0.00 4.45
4475 5679 2.957474 ACCAAACTAAACATGTGCCCT 58.043 42.857 0.00 0.00 0.00 5.19
4548 5760 1.388547 AGAGCTAGCCGAGTCTTCAG 58.611 55.000 12.13 0.00 0.00 3.02
4552 5764 2.888414 GGATAAAGAGCTAGCCGAGTCT 59.112 50.000 12.13 4.58 0.00 3.24
4579 5792 1.053424 TCTGCTACGGTTCCCAAAGT 58.947 50.000 0.00 0.00 0.00 2.66
4746 5962 1.148273 GCACCACTGTGACCCTTCA 59.852 57.895 9.86 0.00 45.76 3.02
4747 5963 1.148273 TGCACCACTGTGACCCTTC 59.852 57.895 9.86 0.00 45.76 3.46
4748 5964 1.152963 GTGCACCACTGTGACCCTT 60.153 57.895 9.86 0.00 45.76 3.95
4749 5965 2.510906 GTGCACCACTGTGACCCT 59.489 61.111 9.86 0.00 45.76 4.34
4750 5966 2.594592 GGTGCACCACTGTGACCC 60.595 66.667 31.23 0.00 45.76 4.46
4751 5967 2.594592 GGGTGCACCACTGTGACC 60.595 66.667 35.78 13.32 45.76 4.02
4752 5968 1.893808 CAGGGTGCACCACTGTGAC 60.894 63.158 35.78 17.40 45.76 3.67
4753 5969 2.510411 CAGGGTGCACCACTGTGA 59.490 61.111 35.78 0.00 45.76 3.58
4754 5970 3.289834 GCAGGGTGCACCACTGTG 61.290 66.667 35.03 27.36 44.26 3.66
4755 5971 4.935495 CGCAGGGTGCACCACTGT 62.935 66.667 35.03 19.74 45.36 3.55
4768 5984 0.449388 GATTTGAACTCTGGCCGCAG 59.551 55.000 0.00 0.00 0.00 5.18
4769 5985 0.960364 GGATTTGAACTCTGGCCGCA 60.960 55.000 0.00 0.00 0.00 5.69
4770 5986 1.657751 GGGATTTGAACTCTGGCCGC 61.658 60.000 0.00 0.00 0.00 6.53
4771 5987 1.369091 CGGGATTTGAACTCTGGCCG 61.369 60.000 0.00 0.00 0.00 6.13
4772 5988 0.322546 ACGGGATTTGAACTCTGGCC 60.323 55.000 0.00 0.00 0.00 5.36
4773 5989 1.087501 GACGGGATTTGAACTCTGGC 58.912 55.000 0.00 0.00 0.00 4.85
4774 5990 1.359848 CGACGGGATTTGAACTCTGG 58.640 55.000 0.00 0.00 0.00 3.86
4775 5991 1.359848 CCGACGGGATTTGAACTCTG 58.640 55.000 5.81 0.00 34.06 3.35
4776 5992 3.834732 CCGACGGGATTTGAACTCT 57.165 52.632 5.81 0.00 34.06 3.24
4787 6003 1.743995 AAAATTCGCTCCCGACGGG 60.744 57.895 27.86 27.86 44.30 5.28
4788 6004 1.423845 CAAAATTCGCTCCCGACGG 59.576 57.895 6.99 6.99 44.30 4.79
4789 6005 1.226018 GCAAAATTCGCTCCCGACG 60.226 57.895 0.00 0.00 44.30 5.12
4790 6006 1.226018 CGCAAAATTCGCTCCCGAC 60.226 57.895 0.00 0.00 44.30 4.79
4791 6007 0.951525 TTCGCAAAATTCGCTCCCGA 60.952 50.000 0.00 0.00 42.66 5.14
4792 6008 0.098728 ATTCGCAAAATTCGCTCCCG 59.901 50.000 0.00 0.00 0.00 5.14
4793 6009 2.278026 AATTCGCAAAATTCGCTCCC 57.722 45.000 0.00 0.00 0.00 4.30
4794 6010 3.301642 CAGAAATTCGCAAAATTCGCTCC 59.698 43.478 0.00 0.00 30.94 4.70
4795 6011 3.301642 CCAGAAATTCGCAAAATTCGCTC 59.698 43.478 0.00 0.00 30.94 5.03
4796 6012 3.244976 CCAGAAATTCGCAAAATTCGCT 58.755 40.909 0.00 0.00 30.94 4.93
4797 6013 2.986479 ACCAGAAATTCGCAAAATTCGC 59.014 40.909 0.00 0.00 30.94 4.70
4798 6014 4.089923 GGAACCAGAAATTCGCAAAATTCG 59.910 41.667 0.00 0.00 30.94 3.34
4799 6015 5.230182 AGGAACCAGAAATTCGCAAAATTC 58.770 37.500 0.00 0.00 0.00 2.17
4800 6016 5.213891 AGGAACCAGAAATTCGCAAAATT 57.786 34.783 0.00 0.00 0.00 1.82
4801 6017 4.280677 TGAGGAACCAGAAATTCGCAAAAT 59.719 37.500 0.00 0.00 0.00 1.82
4802 6018 3.634448 TGAGGAACCAGAAATTCGCAAAA 59.366 39.130 0.00 0.00 0.00 2.44
4803 6019 3.004315 GTGAGGAACCAGAAATTCGCAAA 59.996 43.478 0.00 0.00 0.00 3.68
4804 6020 2.552315 GTGAGGAACCAGAAATTCGCAA 59.448 45.455 0.00 0.00 0.00 4.85
4805 6021 2.151202 GTGAGGAACCAGAAATTCGCA 58.849 47.619 0.00 0.00 0.00 5.10
4806 6022 2.902065 GTGAGGAACCAGAAATTCGC 57.098 50.000 0.00 0.00 0.00 4.70
4826 6042 1.420430 TATAGAAGAAGCCCACCCGG 58.580 55.000 0.00 0.00 0.00 5.73
4827 6043 3.553828 TTTATAGAAGAAGCCCACCCG 57.446 47.619 0.00 0.00 0.00 5.28
4828 6044 7.505923 ACATATTTTTATAGAAGAAGCCCACCC 59.494 37.037 0.00 0.00 0.00 4.61
4829 6045 8.465273 ACATATTTTTATAGAAGAAGCCCACC 57.535 34.615 0.00 0.00 0.00 4.61
4830 6046 8.568794 GGACATATTTTTATAGAAGAAGCCCAC 58.431 37.037 0.00 0.00 0.00 4.61
4831 6047 8.502738 AGGACATATTTTTATAGAAGAAGCCCA 58.497 33.333 0.00 0.00 0.00 5.36
4832 6048 8.787852 CAGGACATATTTTTATAGAAGAAGCCC 58.212 37.037 0.00 0.00 0.00 5.19
4833 6049 8.787852 CCAGGACATATTTTTATAGAAGAAGCC 58.212 37.037 0.00 0.00 0.00 4.35
4834 6050 8.787852 CCCAGGACATATTTTTATAGAAGAAGC 58.212 37.037 0.00 0.00 0.00 3.86
4835 6051 9.853177 ACCCAGGACATATTTTTATAGAAGAAG 57.147 33.333 0.00 0.00 0.00 2.85
4836 6052 9.627123 CACCCAGGACATATTTTTATAGAAGAA 57.373 33.333 0.00 0.00 0.00 2.52
4837 6053 7.719633 GCACCCAGGACATATTTTTATAGAAGA 59.280 37.037 0.00 0.00 0.00 2.87
4838 6054 7.721399 AGCACCCAGGACATATTTTTATAGAAG 59.279 37.037 0.00 0.00 0.00 2.85
4839 6055 7.582719 AGCACCCAGGACATATTTTTATAGAA 58.417 34.615 0.00 0.00 0.00 2.10
4840 6056 7.149202 AGCACCCAGGACATATTTTTATAGA 57.851 36.000 0.00 0.00 0.00 1.98
4841 6057 8.157476 ACTAGCACCCAGGACATATTTTTATAG 58.843 37.037 0.00 0.00 0.00 1.31
4842 6058 7.936847 CACTAGCACCCAGGACATATTTTTATA 59.063 37.037 0.00 0.00 0.00 0.98
4843 6059 6.772716 CACTAGCACCCAGGACATATTTTTAT 59.227 38.462 0.00 0.00 0.00 1.40
4844 6060 6.119536 CACTAGCACCCAGGACATATTTTTA 58.880 40.000 0.00 0.00 0.00 1.52
4845 6061 4.949856 CACTAGCACCCAGGACATATTTTT 59.050 41.667 0.00 0.00 0.00 1.94
4846 6062 4.526970 CACTAGCACCCAGGACATATTTT 58.473 43.478 0.00 0.00 0.00 1.82
4847 6063 3.685550 GCACTAGCACCCAGGACATATTT 60.686 47.826 0.00 0.00 41.58 1.40
4848 6064 2.158755 GCACTAGCACCCAGGACATATT 60.159 50.000 0.00 0.00 41.58 1.28
4849 6065 1.417890 GCACTAGCACCCAGGACATAT 59.582 52.381 0.00 0.00 41.58 1.78
4850 6066 0.830648 GCACTAGCACCCAGGACATA 59.169 55.000 0.00 0.00 41.58 2.29
4851 6067 1.604378 GCACTAGCACCCAGGACAT 59.396 57.895 0.00 0.00 41.58 3.06
4852 6068 2.592993 GGCACTAGCACCCAGGACA 61.593 63.158 0.00 0.00 44.61 4.02
4853 6069 2.269241 GGCACTAGCACCCAGGAC 59.731 66.667 0.00 0.00 44.61 3.85
4854 6070 3.009115 GGGCACTAGCACCCAGGA 61.009 66.667 14.48 0.00 46.22 3.86
4858 6074 1.999634 ATCCATGGGCACTAGCACCC 62.000 60.000 13.02 12.83 46.13 4.61
4859 6075 0.536006 GATCCATGGGCACTAGCACC 60.536 60.000 13.02 0.00 46.13 5.01
4861 6077 0.761187 GAGATCCATGGGCACTAGCA 59.239 55.000 13.02 0.00 44.61 3.49
4862 6078 0.761187 TGAGATCCATGGGCACTAGC 59.239 55.000 13.02 0.00 41.10 3.42
4863 6079 3.784511 AATGAGATCCATGGGCACTAG 57.215 47.619 13.02 0.00 35.24 2.57
4864 6080 4.524802 AAAATGAGATCCATGGGCACTA 57.475 40.909 13.02 0.00 35.24 2.74
4865 6081 3.393426 AAAATGAGATCCATGGGCACT 57.607 42.857 13.02 8.87 35.24 4.40
4866 6082 5.796424 ATTAAAATGAGATCCATGGGCAC 57.204 39.130 13.02 4.00 35.24 5.01
4867 6083 6.156602 ACAAATTAAAATGAGATCCATGGGCA 59.843 34.615 13.02 5.95 35.24 5.36
4868 6084 6.480981 CACAAATTAAAATGAGATCCATGGGC 59.519 38.462 13.02 4.54 35.24 5.36
4869 6085 6.987992 CCACAAATTAAAATGAGATCCATGGG 59.012 38.462 13.02 0.00 35.24 4.00
4870 6086 7.784037 TCCACAAATTAAAATGAGATCCATGG 58.216 34.615 4.97 4.97 35.24 3.66
4871 6087 7.437267 GCTCCACAAATTAAAATGAGATCCATG 59.563 37.037 0.00 0.00 35.24 3.66
4872 6088 7.124599 TGCTCCACAAATTAAAATGAGATCCAT 59.875 33.333 0.00 0.00 36.99 3.41
4873 6089 6.436847 TGCTCCACAAATTAAAATGAGATCCA 59.563 34.615 0.00 0.00 0.00 3.41
4874 6090 6.866480 TGCTCCACAAATTAAAATGAGATCC 58.134 36.000 0.00 0.00 0.00 3.36
4875 6091 8.761575 TTTGCTCCACAAATTAAAATGAGATC 57.238 30.769 0.00 0.00 43.35 2.75
4922 6138 1.066908 ACAAGGCAACAATGTCAACCG 59.933 47.619 0.00 0.00 34.23 4.44
4930 6146 1.335872 GCGCTGTTACAAGGCAACAAT 60.336 47.619 0.00 0.00 35.57 2.71
4933 6149 0.030101 TTGCGCTGTTACAAGGCAAC 59.970 50.000 15.51 0.64 38.55 4.17
4946 6165 0.102300 AAAAGAAAACGGCTTGCGCT 59.898 45.000 9.73 0.00 36.09 5.92
4949 6168 4.591998 TTTCAAAAAGAAAACGGCTTGC 57.408 36.364 0.00 0.00 43.00 4.01
4968 6187 6.591448 GCATTCCAGCTTAGTTTTAGCAATTT 59.409 34.615 0.00 0.00 41.11 1.82
4975 6194 4.320023 TGTCGCATTCCAGCTTAGTTTTA 58.680 39.130 0.00 0.00 0.00 1.52
4982 6201 2.119801 ATCTTGTCGCATTCCAGCTT 57.880 45.000 0.00 0.00 0.00 3.74
4995 6232 2.026641 ACAGCACAGCACAAATCTTGT 58.973 42.857 0.00 0.00 46.75 3.16
4996 6233 2.787601 ACAGCACAGCACAAATCTTG 57.212 45.000 0.00 0.00 0.00 3.02
5022 6259 0.519961 ACGCAAAACAGATAACGGGC 59.480 50.000 0.00 0.00 0.00 6.13
5026 6263 2.315901 GCCACACGCAAAACAGATAAC 58.684 47.619 0.00 0.00 37.47 1.89
5039 6276 1.742880 CTCAGACCATGGCCACACG 60.743 63.158 8.16 0.00 0.00 4.49
5047 6284 3.996150 AAAACACAAGCTCAGACCATG 57.004 42.857 0.00 0.00 0.00 3.66
5074 6311 5.050091 ACACTGCGAAAAGAATTAGACACAG 60.050 40.000 0.00 0.00 0.00 3.66
5091 6328 0.584396 TAAAAACAGCGGACACTGCG 59.416 50.000 0.00 0.00 41.60 5.18
5139 6376 3.521947 ACTTTTATCGGACGAAGGGAG 57.478 47.619 0.00 0.00 0.00 4.30
5140 6377 3.007182 ACAACTTTTATCGGACGAAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
5141 6378 3.332034 ACAACTTTTATCGGACGAAGGG 58.668 45.455 0.00 0.00 0.00 3.95
5142 6379 3.370061 GGACAACTTTTATCGGACGAAGG 59.630 47.826 0.00 0.00 0.00 3.46
5143 6380 3.370061 GGGACAACTTTTATCGGACGAAG 59.630 47.826 0.00 0.00 0.00 3.79
5144 6381 3.328505 GGGACAACTTTTATCGGACGAA 58.671 45.455 0.00 0.00 0.00 3.85
5145 6382 2.354003 GGGGACAACTTTTATCGGACGA 60.354 50.000 0.00 0.00 0.00 4.20
5146 6383 2.004733 GGGGACAACTTTTATCGGACG 58.995 52.381 0.00 0.00 0.00 4.79
5147 6384 2.004733 CGGGGACAACTTTTATCGGAC 58.995 52.381 0.00 0.00 0.00 4.79
5148 6385 1.901159 TCGGGGACAACTTTTATCGGA 59.099 47.619 0.00 0.00 0.00 4.55
5149 6386 2.277084 CTCGGGGACAACTTTTATCGG 58.723 52.381 0.00 0.00 0.00 4.18
5150 6387 2.277084 CCTCGGGGACAACTTTTATCG 58.723 52.381 0.00 0.00 33.58 2.92
5151 6388 3.055312 AGACCTCGGGGACAACTTTTATC 60.055 47.826 9.33 0.00 36.25 1.75
5152 6389 2.910977 AGACCTCGGGGACAACTTTTAT 59.089 45.455 9.33 0.00 36.25 1.40
5153 6390 2.332117 AGACCTCGGGGACAACTTTTA 58.668 47.619 9.33 0.00 36.25 1.52
5154 6391 1.137697 AGACCTCGGGGACAACTTTT 58.862 50.000 9.33 0.00 36.25 2.27
5155 6392 1.137697 AAGACCTCGGGGACAACTTT 58.862 50.000 9.33 0.00 36.25 2.66
5156 6393 1.137697 AAAGACCTCGGGGACAACTT 58.862 50.000 9.33 5.12 36.25 2.66
5157 6394 1.137697 AAAAGACCTCGGGGACAACT 58.862 50.000 9.33 0.00 36.25 3.16
5158 6395 1.977056 AAAAAGACCTCGGGGACAAC 58.023 50.000 9.33 0.00 36.25 3.32
5174 6411 2.815158 GCTGGGGGTATTCCTGAAAAA 58.185 47.619 0.00 0.00 35.33 1.94
5175 6412 1.340600 CGCTGGGGGTATTCCTGAAAA 60.341 52.381 0.00 0.00 35.33 2.29
5176 6413 0.254747 CGCTGGGGGTATTCCTGAAA 59.745 55.000 0.00 0.00 35.33 2.69
5177 6414 1.912220 CGCTGGGGGTATTCCTGAA 59.088 57.895 0.00 0.00 35.33 3.02
5178 6415 3.642078 CGCTGGGGGTATTCCTGA 58.358 61.111 0.00 0.00 35.33 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.