Multiple sequence alignment - TraesCS5B01G200700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G200700 chr5B 100.000 6831 0 0 1 6831 362839544 362846374 0.000000e+00 12615.0
1 TraesCS5B01G200700 chr5B 95.215 209 6 3 4965 5171 458559822 458560028 1.840000e-85 327.0
2 TraesCS5B01G200700 chr5B 90.000 60 6 0 534 593 456511897 456511838 2.040000e-10 78.7
3 TraesCS5B01G200700 chr5D 96.262 3264 87 17 1730 4976 314847332 314850577 0.000000e+00 5319.0
4 TraesCS5B01G200700 chr5D 96.113 1132 17 6 5158 6285 314850560 314851668 0.000000e+00 1821.0
5 TraesCS5B01G200700 chr5D 94.124 953 35 11 779 1722 314846428 314847368 0.000000e+00 1430.0
6 TraesCS5B01G200700 chr5D 90.584 531 31 11 6302 6829 314877622 314878136 0.000000e+00 686.0
7 TraesCS5B01G200700 chr5D 88.540 541 48 11 1 535 314845653 314846185 1.610000e-180 643.0
8 TraesCS5B01G200700 chr5D 85.811 148 6 5 630 775 314846248 314846382 7.140000e-30 143.0
9 TraesCS5B01G200700 chr5D 95.775 71 2 1 1980 2050 251307796 251307865 5.600000e-21 113.0
10 TraesCS5B01G200700 chr5D 97.368 38 1 0 529 566 463173862 463173899 1.590000e-06 65.8
11 TraesCS5B01G200700 chr5A 92.752 2925 131 30 2084 4976 408910719 408913594 0.000000e+00 4152.0
12 TraesCS5B01G200700 chr5A 90.120 1751 112 31 1 1712 408908646 408910374 0.000000e+00 2218.0
13 TraesCS5B01G200700 chr5A 93.291 1431 55 18 5158 6576 408913577 408914978 0.000000e+00 2073.0
14 TraesCS5B01G200700 chr1B 95.349 215 7 3 4963 5175 374010351 374010138 8.490000e-89 339.0
15 TraesCS5B01G200700 chr1B 96.970 198 4 2 4973 5170 301282209 301282404 1.420000e-86 331.0
16 TraesCS5B01G200700 chr2B 98.429 191 3 0 4977 5167 48048713 48048523 3.050000e-88 337.0
17 TraesCS5B01G200700 chr2B 97.475 198 4 1 4962 5159 583775802 583775998 3.050000e-88 337.0
18 TraesCS5B01G200700 chr2B 78.610 374 60 17 6469 6829 655652228 655651862 5.330000e-56 230.0
19 TraesCS5B01G200700 chr7A 98.421 190 3 0 4974 5163 433079860 433079671 1.100000e-87 335.0
20 TraesCS5B01G200700 chr7A 82.918 281 41 4 6551 6828 646554050 646553774 5.290000e-61 246.0
21 TraesCS5B01G200700 chr7A 97.436 39 0 1 540 577 33153249 33153211 1.590000e-06 65.8
22 TraesCS5B01G200700 chr1A 98.429 191 2 1 4974 5164 155846915 155847104 1.100000e-87 335.0
23 TraesCS5B01G200700 chr1A 81.955 266 43 4 3668 3930 385658697 385658960 3.210000e-53 220.0
24 TraesCS5B01G200700 chr1A 97.059 34 1 0 544 577 493216614 493216581 2.660000e-04 58.4
25 TraesCS5B01G200700 chr3B 97.449 196 4 1 4975 5170 195101779 195101585 3.950000e-87 333.0
26 TraesCS5B01G200700 chr3B 93.590 78 3 2 1973 2050 556538506 556538581 1.560000e-21 115.0
27 TraesCS5B01G200700 chr3A 96.535 202 6 1 4960 5161 699851648 699851848 3.950000e-87 333.0
28 TraesCS5B01G200700 chr3A 80.087 231 36 8 93 321 706511998 706511776 5.480000e-36 163.0
29 TraesCS5B01G200700 chr3A 93.243 74 5 0 1977 2050 215955008 215955081 7.240000e-20 110.0
30 TraesCS5B01G200700 chr3A 93.243 74 5 0 1977 2050 400099498 400099425 7.240000e-20 110.0
31 TraesCS5B01G200700 chr4D 80.055 366 55 16 6468 6824 491955877 491955521 8.790000e-64 255.0
32 TraesCS5B01G200700 chr4D 83.732 209 27 6 120 323 313885542 313885336 2.510000e-44 191.0
33 TraesCS5B01G200700 chr4D 83.951 162 21 4 169 326 458264455 458264295 4.270000e-32 150.0
34 TraesCS5B01G200700 chr4D 88.679 53 3 2 530 582 509538463 509538512 2.060000e-05 62.1
35 TraesCS5B01G200700 chr2D 79.255 376 53 15 6469 6830 48606022 48606386 8.850000e-59 239.0
36 TraesCS5B01G200700 chr2D 80.508 236 42 4 92 325 566836766 566836999 1.960000e-40 178.0
37 TraesCS5B01G200700 chr6A 80.818 318 46 13 6520 6829 574543666 574543976 1.150000e-57 235.0
38 TraesCS5B01G200700 chr6A 81.159 207 33 6 121 322 154046511 154046716 1.970000e-35 161.0
39 TraesCS5B01G200700 chr6A 94.595 37 2 0 534 570 552772858 552772894 2.660000e-04 58.4
40 TraesCS5B01G200700 chr3D 78.820 373 52 20 6467 6823 582850226 582850587 6.890000e-55 226.0
41 TraesCS5B01G200700 chr3D 93.243 74 5 0 1977 2050 347591043 347590970 7.240000e-20 110.0
42 TraesCS5B01G200700 chr3D 89.583 48 2 2 533 580 305880144 305880100 2.660000e-04 58.4
43 TraesCS5B01G200700 chr6D 77.573 379 63 19 6467 6830 10778035 10777664 6.940000e-50 209.0
44 TraesCS5B01G200700 chr6B 83.256 215 33 2 6541 6754 240381508 240381296 1.940000e-45 195.0
45 TraesCS5B01G200700 chr7B 78.571 224 45 3 97 319 708834619 708834840 1.990000e-30 145.0
46 TraesCS5B01G200700 chr7B 79.412 204 33 7 119 321 711542243 711542048 1.200000e-27 135.0
47 TraesCS5B01G200700 chr7D 93.421 76 3 2 1977 2051 425728128 425728054 2.010000e-20 111.0
48 TraesCS5B01G200700 chr4B 93.421 76 3 2 1973 2048 206799975 206800048 2.010000e-20 111.0
49 TraesCS5B01G200700 chr4B 92.308 78 4 2 1973 2050 446337665 446337590 7.240000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G200700 chr5B 362839544 362846374 6830 False 12615.000000 12615 100.000000 1 6831 1 chr5B.!!$F1 6830
1 TraesCS5B01G200700 chr5D 314845653 314851668 6015 False 1871.200000 5319 92.170000 1 6285 5 chr5D.!!$F4 6284
2 TraesCS5B01G200700 chr5D 314877622 314878136 514 False 686.000000 686 90.584000 6302 6829 1 chr5D.!!$F2 527
3 TraesCS5B01G200700 chr5A 408908646 408914978 6332 False 2814.333333 4152 92.054333 1 6576 3 chr5A.!!$F1 6575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
291 297 0.247736 AAGTCAGACCGGAGTGCATC 59.752 55.0 9.46 0.00 0.00 3.91 F
1584 1685 0.037605 GAACGGGGAGTGATGAACGT 60.038 55.0 0.00 0.00 35.95 3.99 F
1587 1688 0.037697 CGGGGAGTGATGAACGTGAA 60.038 55.0 0.00 0.00 0.00 3.18 F
2075 2240 0.104855 TCTACCTCATGCATGTCGCC 59.895 55.0 25.43 0.00 41.33 5.54 F
2076 2241 0.105593 CTACCTCATGCATGTCGCCT 59.894 55.0 25.43 8.18 41.33 5.52 F
2253 2418 0.110486 ACCCCGACTTGCTGATTGTT 59.890 50.0 0.00 0.00 0.00 2.83 F
4113 4300 0.320771 CTATGGCCTATGCACGGGAC 60.321 60.0 3.32 8.20 40.13 4.46 F
4985 5188 0.038166 TTCATGGTGTGAAGGGGAGC 59.962 55.0 0.00 0.00 41.79 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1719 1832 0.108709 AAACAAATGCGCGCATCCAT 60.109 45.000 43.06 29.47 35.31 3.41 R
3534 3721 4.207955 TGCAGATACTAAGACGATCAGGT 58.792 43.478 0.00 0.00 0.00 4.00 R
3763 3950 4.245660 CGTATATCAGGGTGTAATGGCAG 58.754 47.826 0.00 0.00 0.00 4.85 R
4098 4285 2.044806 ATGAGTCCCGTGCATAGGCC 62.045 60.000 0.00 0.00 40.13 5.19 R
4175 4371 2.761559 TCACTACATGAAACCACGTGG 58.238 47.619 32.83 32.83 36.23 4.94 R
4281 4477 5.247110 AGGAGATCAAGTGCTTTCTTCTACA 59.753 40.000 0.00 0.00 0.00 2.74 R
5007 5210 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85 R
6465 6698 0.328258 AGGGTGCATTTAAGCTCGGT 59.672 50.000 0.00 0.00 34.99 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 3.999001 TGATCTCACTGAAAGCATGTGTC 59.001 43.478 0.00 0.00 37.60 3.67
109 113 8.644318 AAGTAAGACCTAATAAATGCTACACG 57.356 34.615 0.00 0.00 0.00 4.49
110 114 5.986004 AAGACCTAATAAATGCTACACGC 57.014 39.130 0.00 0.00 39.77 5.34
126 130 3.318886 ACACGCGTTACATGAACACATA 58.681 40.909 10.22 0.00 37.99 2.29
195 200 5.482908 AGAACTTTAGTTGTCGAGCATGAT 58.517 37.500 0.00 0.00 38.56 2.45
198 203 7.766278 AGAACTTTAGTTGTCGAGCATGATAAT 59.234 33.333 0.00 0.00 38.56 1.28
203 208 6.741992 AGTTGTCGAGCATGATAATTTTCA 57.258 33.333 0.00 0.87 0.00 2.69
225 230 6.913170 TCATTTTAGATGGCAAGTTTCAGTC 58.087 36.000 0.00 0.00 0.00 3.51
235 240 9.691362 GATGGCAAGTTTCAGTCTTTTTATTTA 57.309 29.630 0.00 0.00 0.00 1.40
237 242 8.691797 TGGCAAGTTTCAGTCTTTTTATTTACT 58.308 29.630 0.00 0.00 0.00 2.24
238 243 9.529325 GGCAAGTTTCAGTCTTTTTATTTACTT 57.471 29.630 0.00 0.00 0.00 2.24
291 297 0.247736 AAGTCAGACCGGAGTGCATC 59.752 55.000 9.46 0.00 0.00 3.91
399 405 8.186821 ACTGACTGAATCAAACAGAAAAAGAAG 58.813 33.333 18.19 0.00 36.69 2.85
487 493 6.413052 AGTTCACATGTGCTATCTTCATTCT 58.587 36.000 21.38 1.09 0.00 2.40
489 495 7.710044 AGTTCACATGTGCTATCTTCATTCTAG 59.290 37.037 21.38 0.00 0.00 2.43
541 547 7.550906 GCCTATCAAAATGTCTTGTACTCTCTT 59.449 37.037 0.00 0.00 0.00 2.85
543 549 7.588143 ATCAAAATGTCTTGTACTCTCTTCG 57.412 36.000 0.00 0.00 0.00 3.79
561 567 9.836739 CTCTCTTCGTAAAGAAATATAAAAGCG 57.163 33.333 0.00 0.00 40.95 4.68
562 568 9.362539 TCTCTTCGTAAAGAAATATAAAAGCGT 57.637 29.630 0.00 0.00 40.95 5.07
611 618 5.088026 AGGGATATGTTAGAAGGAGGTAGC 58.912 45.833 0.00 0.00 0.00 3.58
616 623 5.543507 ATGTTAGAAGGAGGTAGCAGATG 57.456 43.478 0.00 0.00 0.00 2.90
709 744 2.635714 ACGGAAAACAATATCGTCCCC 58.364 47.619 0.00 0.00 0.00 4.81
710 745 1.595794 CGGAAAACAATATCGTCCCCG 59.404 52.381 0.00 0.00 0.00 5.73
811 900 3.690745 GGGAAGACCGAACTCCGA 58.309 61.111 0.00 0.00 41.76 4.55
812 901 1.969862 GGGAAGACCGAACTCCGAA 59.030 57.895 0.00 0.00 41.76 4.30
985 1086 4.436998 GGCTCACACGTCTCCCCG 62.437 72.222 0.00 0.00 0.00 5.73
1275 1376 1.448540 CTCCTGCTTCGCCGTGAAT 60.449 57.895 0.00 0.00 35.63 2.57
1352 1453 2.685380 CCTCCGCCTCAAGGTCCT 60.685 66.667 0.00 0.00 37.57 3.85
1390 1491 8.188139 TGAAAATCTTCTTAAATTATGTCGCCC 58.812 33.333 0.00 0.00 32.33 6.13
1583 1684 0.246635 AGAACGGGGAGTGATGAACG 59.753 55.000 0.00 0.00 0.00 3.95
1584 1685 0.037605 GAACGGGGAGTGATGAACGT 60.038 55.000 0.00 0.00 35.95 3.99
1585 1686 0.320421 AACGGGGAGTGATGAACGTG 60.320 55.000 0.00 0.00 34.54 4.49
1586 1687 1.183030 ACGGGGAGTGATGAACGTGA 61.183 55.000 0.00 0.00 32.90 4.35
1587 1688 0.037697 CGGGGAGTGATGAACGTGAA 60.038 55.000 0.00 0.00 0.00 3.18
1588 1689 1.439679 GGGGAGTGATGAACGTGAAC 58.560 55.000 0.00 0.00 0.00 3.18
1602 1704 2.166459 ACGTGAACCGATGACTGATGAT 59.834 45.455 0.00 0.00 40.70 2.45
1634 1736 4.513406 TTGTGTAGGGGATAATGGGTTC 57.487 45.455 0.00 0.00 0.00 3.62
1708 1821 2.278142 GTTTCCATGGATGCGCGC 60.278 61.111 27.26 27.26 0.00 6.86
1709 1822 2.749441 TTTCCATGGATGCGCGCA 60.749 55.556 38.27 38.27 0.00 6.09
1710 1823 2.120282 TTTCCATGGATGCGCGCAT 61.120 52.632 43.91 43.91 39.69 4.73
1711 1824 1.665264 TTTCCATGGATGCGCGCATT 61.665 50.000 43.17 27.82 36.70 3.56
1712 1825 1.665264 TTCCATGGATGCGCGCATTT 61.665 50.000 43.17 28.77 36.70 2.32
1713 1826 1.947146 CCATGGATGCGCGCATTTG 60.947 57.895 43.17 35.29 36.70 2.32
1714 1827 1.226745 CATGGATGCGCGCATTTGT 60.227 52.632 43.17 28.87 36.70 2.83
1715 1828 0.802994 CATGGATGCGCGCATTTGTT 60.803 50.000 43.17 25.97 36.70 2.83
1716 1829 0.108709 ATGGATGCGCGCATTTGTTT 60.109 45.000 43.17 25.16 36.70 2.83
1717 1830 0.732196 TGGATGCGCGCATTTGTTTC 60.732 50.000 43.17 30.77 36.70 2.78
1718 1831 1.413008 GGATGCGCGCATTTGTTTCC 61.413 55.000 43.17 34.85 36.70 3.13
1719 1832 0.732196 GATGCGCGCATTTGTTTCCA 60.732 50.000 43.17 15.76 36.70 3.53
1720 1833 0.108709 ATGCGCGCATTTGTTTCCAT 60.109 45.000 39.13 16.06 31.82 3.41
1721 1834 1.007848 TGCGCGCATTTGTTTCCATG 61.008 50.000 33.09 0.00 0.00 3.66
1722 1835 1.685640 GCGCGCATTTGTTTCCATGG 61.686 55.000 29.10 4.97 0.00 3.66
1723 1836 0.109365 CGCGCATTTGTTTCCATGGA 60.109 50.000 11.44 11.44 0.00 3.41
1724 1837 1.469595 CGCGCATTTGTTTCCATGGAT 60.470 47.619 17.06 0.00 0.00 3.41
1725 1838 1.928503 GCGCATTTGTTTCCATGGATG 59.071 47.619 17.06 10.92 0.00 3.51
1726 1839 1.928503 CGCATTTGTTTCCATGGATGC 59.071 47.619 20.97 20.97 37.21 3.91
1727 1840 1.928503 GCATTTGTTTCCATGGATGCG 59.071 47.619 17.06 1.51 31.83 4.73
1728 1841 1.928503 CATTTGTTTCCATGGATGCGC 59.071 47.619 17.06 0.00 0.00 6.09
1729 1842 0.109365 TTTGTTTCCATGGATGCGCG 60.109 50.000 17.06 0.00 0.00 6.86
1730 1843 2.278142 GTTTCCATGGATGCGCGC 60.278 61.111 27.26 27.26 0.00 6.86
1731 1844 2.749441 TTTCCATGGATGCGCGCA 60.749 55.556 38.27 38.27 0.00 6.09
1732 1845 2.120282 TTTCCATGGATGCGCGCAT 61.120 52.632 43.91 43.91 39.69 4.73
1733 1846 1.665264 TTTCCATGGATGCGCGCATT 61.665 50.000 43.17 27.82 36.70 3.56
1734 1847 1.665264 TTCCATGGATGCGCGCATTT 61.665 50.000 43.17 28.77 36.70 2.32
1735 1848 1.947146 CCATGGATGCGCGCATTTG 60.947 57.895 43.17 35.29 36.70 2.32
1736 1849 1.226745 CATGGATGCGCGCATTTGT 60.227 52.632 43.17 28.87 36.70 2.83
1737 1850 0.802994 CATGGATGCGCGCATTTGTT 60.803 50.000 43.17 25.97 36.70 2.83
1738 1851 0.108709 ATGGATGCGCGCATTTGTTT 60.109 45.000 43.17 25.16 36.70 2.83
1739 1852 0.732196 TGGATGCGCGCATTTGTTTC 60.732 50.000 43.17 30.77 36.70 2.78
1740 1853 1.413008 GGATGCGCGCATTTGTTTCC 61.413 55.000 43.17 34.85 36.70 3.13
1741 1854 0.732196 GATGCGCGCATTTGTTTCCA 60.732 50.000 43.17 15.76 36.70 3.53
1742 1855 0.108709 ATGCGCGCATTTGTTTCCAT 60.109 45.000 39.13 16.06 31.82 3.41
1743 1856 1.007848 TGCGCGCATTTGTTTCCATG 61.008 50.000 33.09 0.00 0.00 3.66
1744 1857 1.685640 GCGCGCATTTGTTTCCATGG 61.686 55.000 29.10 4.97 0.00 3.66
1745 1858 0.109365 CGCGCATTTGTTTCCATGGA 60.109 50.000 11.44 11.44 0.00 3.41
1746 1859 1.469595 CGCGCATTTGTTTCCATGGAT 60.470 47.619 17.06 0.00 0.00 3.41
1747 1860 1.928503 GCGCATTTGTTTCCATGGATG 59.071 47.619 17.06 10.92 0.00 3.51
1748 1861 1.928503 CGCATTTGTTTCCATGGATGC 59.071 47.619 20.97 20.97 37.21 3.91
1749 1862 1.928503 GCATTTGTTTCCATGGATGCG 59.071 47.619 17.06 1.51 31.83 4.73
1804 1929 1.678627 TCAAGATCTCTCAGCTACCGC 59.321 52.381 0.00 0.00 0.00 5.68
1928 2053 6.418946 AGGAGGTCTGTTCCAAAATAGAATC 58.581 40.000 0.00 0.00 34.81 2.52
2061 2186 3.386768 TTGCTGTTGACAGACTCTACC 57.613 47.619 14.98 0.00 46.59 3.18
2072 2237 3.131933 ACAGACTCTACCTCATGCATGTC 59.868 47.826 25.43 13.24 0.00 3.06
2075 2240 0.104855 TCTACCTCATGCATGTCGCC 59.895 55.000 25.43 0.00 41.33 5.54
2076 2241 0.105593 CTACCTCATGCATGTCGCCT 59.894 55.000 25.43 8.18 41.33 5.52
2077 2242 0.179076 TACCTCATGCATGTCGCCTG 60.179 55.000 25.43 11.32 41.33 4.85
2078 2243 1.450848 CCTCATGCATGTCGCCTGT 60.451 57.895 25.43 0.00 41.33 4.00
2079 2244 1.712018 CCTCATGCATGTCGCCTGTG 61.712 60.000 25.43 0.00 41.33 3.66
2080 2245 0.741927 CTCATGCATGTCGCCTGTGA 60.742 55.000 25.43 3.61 41.33 3.58
2081 2246 0.741927 TCATGCATGTCGCCTGTGAG 60.742 55.000 25.43 0.00 41.33 3.51
2082 2247 1.450848 ATGCATGTCGCCTGTGAGG 60.451 57.895 0.00 0.00 41.33 3.86
2253 2418 0.110486 ACCCCGACTTGCTGATTGTT 59.890 50.000 0.00 0.00 0.00 2.83
2314 2479 9.525409 AGTATTGTATACCAACTTTCGTGTATC 57.475 33.333 0.00 0.00 35.44 2.24
2328 2493 8.941977 ACTTTCGTGTATCAATGCAATACTTTA 58.058 29.630 8.18 0.00 32.05 1.85
2430 2606 6.566753 GCTGTTTTTAATGGTCTGACTGTCTC 60.567 42.308 9.51 0.12 0.00 3.36
2444 2620 6.096987 TCTGACTGTCTCACTAATTATGGGTC 59.903 42.308 9.51 0.00 0.00 4.46
2448 2624 5.277250 TGTCTCACTAATTATGGGTCCTGA 58.723 41.667 0.00 0.00 0.00 3.86
2669 2845 5.391312 AACAATTCAGTAGCCCATGAAAC 57.609 39.130 0.00 0.00 38.80 2.78
2670 2846 4.406456 ACAATTCAGTAGCCCATGAAACA 58.594 39.130 0.00 0.00 38.80 2.83
2705 2881 9.394477 GTTCTAAACTGTTCAATTACCATGTTC 57.606 33.333 0.00 0.00 0.00 3.18
3022 3198 0.321919 CTGGGCATACTGCTGTGTGT 60.322 55.000 18.99 0.00 44.28 3.72
3274 3450 6.825213 TGATAATATGCTGACCCTAATCATGC 59.175 38.462 0.00 0.00 0.00 4.06
3383 3560 5.941058 TGTACTTCTTGTGTTTTCTCACCAA 59.059 36.000 0.00 0.00 37.51 3.67
3400 3577 9.581289 TTCTCACCAATAAACTTATCCTTTTGA 57.419 29.630 0.00 0.00 0.00 2.69
3494 3681 4.625607 AGCCTTACACTTACTTTGCTCT 57.374 40.909 0.00 0.00 0.00 4.09
3763 3950 4.696479 TCAAATCCTCAGATAGCCCTTC 57.304 45.455 0.00 0.00 30.42 3.46
3967 4154 9.276397 CAAAGTTTTGATTTCAATTGTTTGGAC 57.724 29.630 5.13 0.00 40.55 4.02
4113 4300 0.320771 CTATGGCCTATGCACGGGAC 60.321 60.000 3.32 8.20 40.13 4.46
4165 4361 5.048713 CACCCATACCACTCTTTCTTGAAAC 60.049 44.000 0.00 0.00 0.00 2.78
4175 4371 7.862873 CCACTCTTTCTTGAAACCTTGATAAAC 59.137 37.037 0.00 0.00 0.00 2.01
4197 4393 3.059188 CCACGTGGTTTCATGTAGTGAAC 60.059 47.826 26.95 0.00 46.14 3.18
4271 4467 7.961326 AATCTTAGCAAACATACTGGGAAAT 57.039 32.000 0.00 0.00 0.00 2.17
4281 4477 8.906867 CAAACATACTGGGAAATCTGTATCAAT 58.093 33.333 0.00 0.00 32.10 2.57
4313 4509 2.670414 GCACTTGATCTCCTGAAGTTCG 59.330 50.000 0.00 0.00 0.00 3.95
4372 4568 9.391006 GGTAATGTTGATGTCCTGAAACTATTA 57.609 33.333 0.00 0.00 0.00 0.98
4585 4783 3.366985 GGAATGAAGCCCTTAACAAACGG 60.367 47.826 0.00 0.00 0.00 4.44
4646 4844 0.748005 CTTTGATGGGTAGTGCCGGG 60.748 60.000 2.18 0.00 38.44 5.73
4687 4885 4.923871 AGTTTGTAGTGATTACAGCTGACG 59.076 41.667 23.35 0.00 42.92 4.35
4705 4903 2.225491 GACGCAAGGTTAAGCAATGTGA 59.775 45.455 22.60 0.00 46.39 3.58
4948 5151 3.516300 TCCTGCGTCTATCTACCCAAAAA 59.484 43.478 0.00 0.00 0.00 1.94
4959 5162 5.713760 TCTACCCAAAAATTATACCCGGT 57.286 39.130 0.00 0.00 0.00 5.28
4960 5163 6.077202 TCTACCCAAAAATTATACCCGGTT 57.923 37.500 0.00 0.00 0.00 4.44
4961 5164 7.205515 TCTACCCAAAAATTATACCCGGTTA 57.794 36.000 0.00 0.00 0.00 2.85
4962 5165 7.814356 TCTACCCAAAAATTATACCCGGTTAT 58.186 34.615 0.00 0.00 0.00 1.89
4963 5166 6.964807 ACCCAAAAATTATACCCGGTTATC 57.035 37.500 0.00 0.00 0.00 1.75
4964 5167 6.433441 ACCCAAAAATTATACCCGGTTATCA 58.567 36.000 0.00 0.00 0.00 2.15
4965 5168 7.070629 ACCCAAAAATTATACCCGGTTATCAT 58.929 34.615 0.00 0.00 0.00 2.45
4966 5169 7.565768 ACCCAAAAATTATACCCGGTTATCATT 59.434 33.333 0.00 0.00 0.00 2.57
4967 5170 8.425703 CCCAAAAATTATACCCGGTTATCATTT 58.574 33.333 5.57 5.57 0.00 2.32
4968 5171 9.471084 CCAAAAATTATACCCGGTTATCATTTC 57.529 33.333 10.51 0.00 0.00 2.17
4972 5175 7.938140 ATTATACCCGGTTATCATTTCATGG 57.062 36.000 0.00 0.00 0.00 3.66
4973 5176 3.662759 ACCCGGTTATCATTTCATGGT 57.337 42.857 0.00 0.00 0.00 3.55
4974 5177 3.287222 ACCCGGTTATCATTTCATGGTG 58.713 45.455 0.00 0.00 0.00 4.17
4975 5178 3.287222 CCCGGTTATCATTTCATGGTGT 58.713 45.455 0.00 0.00 0.00 4.16
4976 5179 3.066621 CCCGGTTATCATTTCATGGTGTG 59.933 47.826 0.00 0.00 0.00 3.82
4977 5180 3.944650 CCGGTTATCATTTCATGGTGTGA 59.055 43.478 0.00 0.00 34.25 3.58
4978 5181 4.397730 CCGGTTATCATTTCATGGTGTGAA 59.602 41.667 0.00 0.00 44.87 3.18
4979 5182 5.449041 CCGGTTATCATTTCATGGTGTGAAG 60.449 44.000 0.00 0.00 46.85 3.02
4980 5183 5.449041 CGGTTATCATTTCATGGTGTGAAGG 60.449 44.000 0.00 0.00 46.85 3.46
4981 5184 5.163519 GGTTATCATTTCATGGTGTGAAGGG 60.164 44.000 0.00 0.00 46.85 3.95
4982 5185 2.806434 TCATTTCATGGTGTGAAGGGG 58.194 47.619 0.00 0.00 46.85 4.79
4983 5186 2.378208 TCATTTCATGGTGTGAAGGGGA 59.622 45.455 0.00 0.00 46.85 4.81
4984 5187 2.584835 TTTCATGGTGTGAAGGGGAG 57.415 50.000 0.00 0.00 46.85 4.30
4985 5188 0.038166 TTCATGGTGTGAAGGGGAGC 59.962 55.000 0.00 0.00 41.79 4.70
4986 5189 1.379044 CATGGTGTGAAGGGGAGCC 60.379 63.158 0.00 0.00 0.00 4.70
4987 5190 1.542375 ATGGTGTGAAGGGGAGCCT 60.542 57.895 0.00 0.00 0.00 4.58
4988 5191 1.142688 ATGGTGTGAAGGGGAGCCTT 61.143 55.000 0.00 0.00 0.00 4.35
4989 5192 1.303643 GGTGTGAAGGGGAGCCTTG 60.304 63.158 0.00 0.00 0.00 3.61
4990 5193 1.303643 GTGTGAAGGGGAGCCTTGG 60.304 63.158 0.00 0.00 0.00 3.61
4991 5194 2.361737 GTGAAGGGGAGCCTTGGC 60.362 66.667 2.97 2.97 0.00 4.52
4992 5195 4.033776 TGAAGGGGAGCCTTGGCG 62.034 66.667 5.95 0.00 0.00 5.69
5000 5203 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
5001 5204 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
5002 5205 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
5003 5206 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
5004 5207 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
5005 5208 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
5006 5209 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
5011 5214 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
5012 5215 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
5013 5216 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
5014 5217 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
5015 5218 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
5016 5219 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
5017 5220 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
5018 5221 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
5019 5222 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
5020 5223 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
5021 5224 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
5022 5225 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
5023 5226 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
5024 5227 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
5025 5228 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
5040 5243 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
5041 5244 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
5042 5245 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
5043 5246 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
5044 5247 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
5045 5248 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
5046 5249 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
5047 5250 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
5048 5251 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
5049 5252 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
5065 5268 6.331369 TGGAAACAGCCTCTTTAAGAAATG 57.669 37.500 0.00 0.00 35.01 2.32
5066 5269 5.833131 TGGAAACAGCCTCTTTAAGAAATGT 59.167 36.000 0.00 0.00 35.01 2.71
5067 5270 7.001674 TGGAAACAGCCTCTTTAAGAAATGTA 58.998 34.615 0.00 0.00 35.01 2.29
5068 5271 7.174946 TGGAAACAGCCTCTTTAAGAAATGTAG 59.825 37.037 0.00 0.00 35.01 2.74
5069 5272 7.362142 GGAAACAGCCTCTTTAAGAAATGTAGG 60.362 40.741 0.00 0.00 0.00 3.18
5070 5273 5.501156 ACAGCCTCTTTAAGAAATGTAGGG 58.499 41.667 0.00 0.00 0.00 3.53
5071 5274 5.250774 ACAGCCTCTTTAAGAAATGTAGGGA 59.749 40.000 0.00 0.00 0.00 4.20
5072 5275 6.180472 CAGCCTCTTTAAGAAATGTAGGGAA 58.820 40.000 0.00 0.00 0.00 3.97
5073 5276 6.659242 CAGCCTCTTTAAGAAATGTAGGGAAA 59.341 38.462 0.00 0.00 0.00 3.13
5074 5277 6.887002 AGCCTCTTTAAGAAATGTAGGGAAAG 59.113 38.462 0.00 0.00 0.00 2.62
5075 5278 6.095580 GCCTCTTTAAGAAATGTAGGGAAAGG 59.904 42.308 0.00 0.00 0.00 3.11
5076 5279 6.095580 CCTCTTTAAGAAATGTAGGGAAAGGC 59.904 42.308 0.00 0.00 0.00 4.35
5077 5280 6.790319 TCTTTAAGAAATGTAGGGAAAGGCT 58.210 36.000 0.00 0.00 0.00 4.58
5078 5281 6.659242 TCTTTAAGAAATGTAGGGAAAGGCTG 59.341 38.462 0.00 0.00 0.00 4.85
5079 5282 2.728007 AGAAATGTAGGGAAAGGCTGC 58.272 47.619 0.00 0.00 0.00 5.25
5080 5283 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
5081 5284 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
5082 5285 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
5083 5286 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
5084 5287 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
5085 5288 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
5086 5289 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
5087 5290 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
5088 5291 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
5089 5292 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
5090 5293 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
5091 5294 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
5092 5295 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
5093 5296 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
5094 5297 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
5095 5298 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
5096 5299 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
5097 5300 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
5098 5301 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
5099 5302 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
5100 5303 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
5105 5308 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
5106 5309 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
5107 5310 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
5108 5311 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
5109 5312 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
5110 5313 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
5111 5314 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
5112 5315 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
5113 5316 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
5114 5317 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
5115 5318 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
5116 5319 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
5117 5320 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
5118 5321 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
5119 5322 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
5120 5323 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
5121 5324 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
5122 5325 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
5123 5326 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
5124 5327 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
5149 5352 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
5150 5353 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
5151 5354 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
5152 5355 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
5153 5356 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
5154 5357 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
5155 5358 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
5156 5359 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
5408 5615 1.202879 TGTAAGTGCCCAAGTCCCTTG 60.203 52.381 0.00 0.00 40.75 3.61
5418 5625 2.290896 CCAAGTCCCTTGCCTGTCATAA 60.291 50.000 0.00 0.00 39.85 1.90
5821 6034 0.179171 CGACGTACAAGCGACCATCT 60.179 55.000 0.00 0.00 35.59 2.90
5848 6061 1.203758 TGACATGAGACGGCGTACATT 59.796 47.619 22.87 16.34 0.00 2.71
5852 6065 1.447140 GAGACGGCGTACATTGGCA 60.447 57.895 14.74 0.00 0.00 4.92
5886 6099 6.844254 TGTTTCCGGTGCTTAAATTATGTAC 58.156 36.000 0.00 0.00 0.00 2.90
5887 6100 6.430308 TGTTTCCGGTGCTTAAATTATGTACA 59.570 34.615 0.00 0.00 0.00 2.90
5888 6101 6.671614 TTCCGGTGCTTAAATTATGTACAG 57.328 37.500 0.00 5.31 0.00 2.74
5889 6102 5.736813 TCCGGTGCTTAAATTATGTACAGT 58.263 37.500 0.00 0.00 0.00 3.55
5890 6103 6.876155 TCCGGTGCTTAAATTATGTACAGTA 58.124 36.000 0.00 0.00 0.00 2.74
5891 6104 7.502696 TCCGGTGCTTAAATTATGTACAGTAT 58.497 34.615 0.00 0.00 0.00 2.12
5892 6105 8.640651 TCCGGTGCTTAAATTATGTACAGTATA 58.359 33.333 0.00 0.00 0.00 1.47
6095 6311 5.198207 TGTTGATGATGATCTTGGCTTCAT 58.802 37.500 0.00 0.00 35.33 2.57
6096 6312 5.067283 TGTTGATGATGATCTTGGCTTCATG 59.933 40.000 0.00 0.00 32.84 3.07
6097 6313 5.043737 TGATGATGATCTTGGCTTCATGA 57.956 39.130 0.00 0.00 32.84 3.07
6098 6314 5.442391 TGATGATGATCTTGGCTTCATGAA 58.558 37.500 8.12 8.12 32.84 2.57
6099 6315 5.889289 TGATGATGATCTTGGCTTCATGAAA 59.111 36.000 9.88 0.00 32.84 2.69
6100 6316 6.549736 TGATGATGATCTTGGCTTCATGAAAT 59.450 34.615 9.88 0.00 32.84 2.17
6102 6318 5.655090 TGATGATCTTGGCTTCATGAAATGT 59.345 36.000 9.88 0.00 46.80 2.71
6103 6319 6.829811 TGATGATCTTGGCTTCATGAAATGTA 59.170 34.615 9.88 0.00 46.80 2.29
6104 6320 7.504574 TGATGATCTTGGCTTCATGAAATGTAT 59.495 33.333 9.88 0.00 46.80 2.29
6105 6321 7.034685 TGATCTTGGCTTCATGAAATGTATG 57.965 36.000 9.88 0.00 46.80 2.39
6106 6322 5.252969 TCTTGGCTTCATGAAATGTATGC 57.747 39.130 9.88 8.00 46.80 3.14
6107 6323 4.098349 TCTTGGCTTCATGAAATGTATGCC 59.902 41.667 21.33 21.33 46.80 4.40
6108 6324 2.694628 TGGCTTCATGAAATGTATGCCC 59.305 45.455 23.77 11.70 46.07 5.36
6109 6325 2.036346 GGCTTCATGAAATGTATGCCCC 59.964 50.000 18.71 0.80 46.80 5.80
6224 6456 3.427638 GGGCTTTCTTTTCGAGGTTATGC 60.428 47.826 0.00 0.00 0.00 3.14
6398 6630 7.393234 AGTTGCAGCAGGTTCTAATAAATAACA 59.607 33.333 2.55 0.00 0.00 2.41
6462 6695 4.308899 TCGAAAGCTCTATTCTGCTACC 57.691 45.455 0.00 0.00 38.75 3.18
6463 6696 3.046390 CGAAAGCTCTATTCTGCTACCG 58.954 50.000 0.00 0.00 38.75 4.02
6464 6697 3.489398 CGAAAGCTCTATTCTGCTACCGT 60.489 47.826 0.00 0.00 38.75 4.83
6465 6698 4.261072 CGAAAGCTCTATTCTGCTACCGTA 60.261 45.833 0.00 0.00 38.75 4.02
6466 6699 4.571372 AAGCTCTATTCTGCTACCGTAC 57.429 45.455 0.00 0.00 38.75 3.67
6560 6796 6.252655 GTGTGTGGTAAACTTTGACAAATGTC 59.747 38.462 6.60 6.60 44.97 3.06
6662 6898 3.920231 ACTAGCATCTTTGGAGCATCA 57.080 42.857 0.00 0.00 36.25 3.07
6699 6935 2.160219 CACCACTTCCACGAATGTCATG 59.840 50.000 0.00 0.00 0.00 3.07
6701 6937 2.813754 CCACTTCCACGAATGTCATGTT 59.186 45.455 0.00 0.00 0.00 2.71
6707 6943 2.577450 CACGAATGTCATGTTGTGCTG 58.423 47.619 0.00 0.00 0.00 4.41
6809 7046 5.932619 AATTTTACTGTTCATTAGGGGGC 57.067 39.130 0.00 0.00 0.00 5.80
6829 7066 1.852157 ATTTGAGCCCGGGAGCAGAA 61.852 55.000 29.31 16.70 34.23 3.02
6830 7067 2.748058 TTTGAGCCCGGGAGCAGAAC 62.748 60.000 29.31 3.77 34.23 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 113 5.685841 AGTTGTTATGTGTTCATGTAACGC 58.314 37.500 12.02 12.02 46.70 4.84
110 114 6.073494 TGGAGTTGTTATGTGTTCATGTAACG 60.073 38.462 0.00 0.00 41.30 3.18
113 117 7.283354 TGTTTGGAGTTGTTATGTGTTCATGTA 59.717 33.333 0.00 0.00 35.70 2.29
149 154 4.391830 TCATCCTCACGTCACTAAATTTGC 59.608 41.667 0.00 0.00 0.00 3.68
150 155 5.869344 TCTCATCCTCACGTCACTAAATTTG 59.131 40.000 0.00 0.00 0.00 2.32
198 203 8.203485 ACTGAAACTTGCCATCTAAAATGAAAA 58.797 29.630 0.00 0.00 0.00 2.29
203 208 7.530426 AAGACTGAAACTTGCCATCTAAAAT 57.470 32.000 0.00 0.00 0.00 1.82
208 213 5.859205 AAAAAGACTGAAACTTGCCATCT 57.141 34.783 0.00 0.00 0.00 2.90
235 240 6.451064 AGTTGTCATCCGAAAAGAAAAAGT 57.549 33.333 0.00 0.00 0.00 2.66
237 242 8.463607 ACTAAAGTTGTCATCCGAAAAGAAAAA 58.536 29.630 0.00 0.00 0.00 1.94
238 243 7.992008 ACTAAAGTTGTCATCCGAAAAGAAAA 58.008 30.769 0.00 0.00 0.00 2.29
399 405 5.356190 TCTGGAGATTCATGCTGATGTTTTC 59.644 40.000 0.00 0.00 0.00 2.29
566 572 9.488762 TCCCTCTGTAAAGAAATTAGTGATCTA 57.511 33.333 0.00 0.00 0.00 1.98
567 573 8.380742 TCCCTCTGTAAAGAAATTAGTGATCT 57.619 34.615 0.00 0.00 0.00 2.75
580 586 8.251383 TCCTTCTAACATATCCCTCTGTAAAG 57.749 38.462 0.00 0.00 0.00 1.85
596 603 4.890581 TCTCATCTGCTACCTCCTTCTAAC 59.109 45.833 0.00 0.00 0.00 2.34
709 744 3.450115 GAGTCCGGGTCCCACTCG 61.450 72.222 11.64 0.00 42.83 4.18
710 745 3.450115 CGAGTCCGGGTCCCACTC 61.450 72.222 15.62 15.62 34.36 3.51
711 746 4.296729 ACGAGTCCGGGTCCCACT 62.297 66.667 9.12 4.45 40.78 4.00
712 747 4.065281 CACGAGTCCGGGTCCCAC 62.065 72.222 9.12 0.00 40.78 4.61
719 754 2.558554 CTAGTTGGGCACGAGTCCGG 62.559 65.000 0.00 0.00 44.71 5.14
806 895 1.269998 AGTTCCAAGACGTCTTCGGAG 59.730 52.381 30.56 20.87 41.85 4.63
807 896 1.325355 AGTTCCAAGACGTCTTCGGA 58.675 50.000 29.71 29.71 41.85 4.55
808 897 1.792949 CAAGTTCCAAGACGTCTTCGG 59.207 52.381 27.54 27.39 41.85 4.30
809 898 1.792949 CCAAGTTCCAAGACGTCTTCG 59.207 52.381 27.54 21.49 43.34 3.79
810 899 3.107642 TCCAAGTTCCAAGACGTCTTC 57.892 47.619 27.54 16.28 33.11 2.87
811 900 3.118371 ACTTCCAAGTTCCAAGACGTCTT 60.118 43.478 24.93 24.93 35.21 3.01
812 901 2.434702 ACTTCCAAGTTCCAAGACGTCT 59.565 45.455 13.58 13.58 35.21 4.18
857 946 3.007973 GCCGTGGAGTGGAGGAGTC 62.008 68.421 0.00 0.00 0.00 3.36
858 947 2.997897 GCCGTGGAGTGGAGGAGT 60.998 66.667 0.00 0.00 0.00 3.85
964 1065 4.357947 GAGACGTGTGAGCCGGCA 62.358 66.667 31.54 5.56 35.22 5.69
995 1096 4.854924 CACGGGATGCCATCGCCA 62.855 66.667 15.24 0.00 38.86 5.69
1335 1436 2.685380 AGGACCTTGAGGCGGAGG 60.685 66.667 0.00 2.88 39.32 4.30
1352 1453 4.594920 AGAAGATTTTCAGGTCTGAGGTGA 59.405 41.667 0.00 0.00 41.13 4.02
1397 1498 0.593128 CAACTACACACCCAAGCAGC 59.407 55.000 0.00 0.00 0.00 5.25
1500 1601 3.057596 CCTAATTTGCACCGAAGCTTGAA 60.058 43.478 2.10 0.00 34.99 2.69
1502 1603 2.487762 TCCTAATTTGCACCGAAGCTTG 59.512 45.455 2.10 0.00 34.99 4.01
1583 1684 3.738282 GCTATCATCAGTCATCGGTTCAC 59.262 47.826 0.00 0.00 0.00 3.18
1584 1685 3.638627 AGCTATCATCAGTCATCGGTTCA 59.361 43.478 0.00 0.00 0.00 3.18
1585 1686 4.250116 AGCTATCATCAGTCATCGGTTC 57.750 45.455 0.00 0.00 0.00 3.62
1586 1687 4.375272 CAAGCTATCATCAGTCATCGGTT 58.625 43.478 0.00 0.00 0.00 4.44
1587 1688 3.801638 GCAAGCTATCATCAGTCATCGGT 60.802 47.826 0.00 0.00 0.00 4.69
1588 1689 2.735663 GCAAGCTATCATCAGTCATCGG 59.264 50.000 0.00 0.00 0.00 4.18
1602 1704 3.778075 TCCCCTACACAATTAGCAAGCTA 59.222 43.478 0.00 0.00 0.00 3.32
1634 1736 1.070134 TCAGAAAGGTTCACCACGAGG 59.930 52.381 0.00 0.00 38.89 4.63
1667 1778 5.705609 AATGCTAGTTCGGTCAACAAATT 57.294 34.783 0.00 0.00 37.48 1.82
1713 1826 2.278142 GCGCGCATCCATGGAAAC 60.278 61.111 29.10 12.88 0.00 2.78
1714 1827 1.665264 AATGCGCGCATCCATGGAAA 61.665 50.000 43.06 15.35 35.31 3.13
1715 1828 1.665264 AAATGCGCGCATCCATGGAA 61.665 50.000 43.06 16.19 35.31 3.53
1716 1829 2.120282 AAATGCGCGCATCCATGGA 61.120 52.632 43.06 18.88 35.31 3.41
1717 1830 1.947146 CAAATGCGCGCATCCATGG 60.947 57.895 43.06 24.28 35.31 3.66
1718 1831 0.802994 AACAAATGCGCGCATCCATG 60.803 50.000 43.06 37.52 35.31 3.66
1719 1832 0.108709 AAACAAATGCGCGCATCCAT 60.109 45.000 43.06 29.47 35.31 3.41
1720 1833 0.732196 GAAACAAATGCGCGCATCCA 60.732 50.000 43.06 19.96 35.31 3.41
1721 1834 1.413008 GGAAACAAATGCGCGCATCC 61.413 55.000 43.06 34.72 35.31 3.51
1722 1835 0.732196 TGGAAACAAATGCGCGCATC 60.732 50.000 43.06 30.59 37.44 3.91
1723 1836 1.288439 TGGAAACAAATGCGCGCAT 59.712 47.368 39.13 39.13 37.44 4.73
1724 1837 2.724377 TGGAAACAAATGCGCGCA 59.276 50.000 38.27 38.27 37.44 6.09
1735 1848 2.859806 GCTAATGCGCATCCATGGAAAC 60.860 50.000 25.53 12.88 0.00 2.78
1736 1849 1.337703 GCTAATGCGCATCCATGGAAA 59.662 47.619 25.53 0.00 0.00 3.13
1737 1850 0.953727 GCTAATGCGCATCCATGGAA 59.046 50.000 25.53 1.11 0.00 3.53
1738 1851 0.109153 AGCTAATGCGCATCCATGGA 59.891 50.000 25.53 18.88 45.42 3.41
1739 1852 0.956633 AAGCTAATGCGCATCCATGG 59.043 50.000 25.53 11.58 45.42 3.66
1740 1853 1.399343 CGAAGCTAATGCGCATCCATG 60.399 52.381 25.53 14.51 45.42 3.66
1741 1854 0.870393 CGAAGCTAATGCGCATCCAT 59.130 50.000 25.53 11.16 45.42 3.41
1742 1855 0.179086 TCGAAGCTAATGCGCATCCA 60.179 50.000 25.53 13.80 45.42 3.41
1743 1856 1.136141 CATCGAAGCTAATGCGCATCC 60.136 52.381 25.53 14.93 45.42 3.51
1744 1857 1.724018 GCATCGAAGCTAATGCGCATC 60.724 52.381 25.53 11.69 45.42 3.91
1745 1858 0.236711 GCATCGAAGCTAATGCGCAT 59.763 50.000 19.28 19.28 45.42 4.73
1746 1859 1.643292 GCATCGAAGCTAATGCGCA 59.357 52.632 14.96 14.96 45.42 6.09
1747 1860 4.504152 GCATCGAAGCTAATGCGC 57.496 55.556 5.18 0.00 45.42 6.09
1749 1862 4.802876 AGTAAAGCATCGAAGCTAATGC 57.197 40.909 16.50 16.75 45.89 3.56
1804 1929 2.183679 AGCCTACTCTGGGAAGTTCAG 58.816 52.381 5.01 0.00 0.00 3.02
1897 2022 3.371965 TGGAACAGACCTCCTACCATAC 58.628 50.000 0.00 0.00 33.77 2.39
1928 2053 8.975410 AAATCAGAAATGTGTATGATGTTGTG 57.025 30.769 0.00 0.00 32.85 3.33
1966 2091 7.555087 AGATCTCCAAAACAAGAGTCTATCAG 58.445 38.462 0.00 0.00 0.00 2.90
1970 2095 8.816894 ACATAAGATCTCCAAAACAAGAGTCTA 58.183 33.333 0.00 0.00 0.00 2.59
1980 2105 8.463930 AGTTGAAACACATAAGATCTCCAAAA 57.536 30.769 0.00 0.00 0.00 2.44
1984 2109 7.223777 GCTAGAGTTGAAACACATAAGATCTCC 59.776 40.741 0.00 0.00 0.00 3.71
2075 2240 4.456911 ACAATAATGTTCACAGCCTCACAG 59.543 41.667 0.00 0.00 35.91 3.66
2076 2241 4.397420 ACAATAATGTTCACAGCCTCACA 58.603 39.130 0.00 0.00 35.91 3.58
2077 2242 5.874810 TCTACAATAATGTTCACAGCCTCAC 59.125 40.000 0.00 0.00 41.05 3.51
2078 2243 6.048732 TCTACAATAATGTTCACAGCCTCA 57.951 37.500 0.00 0.00 41.05 3.86
2079 2244 6.985188 TTCTACAATAATGTTCACAGCCTC 57.015 37.500 0.00 0.00 41.05 4.70
2080 2245 7.944729 AATTCTACAATAATGTTCACAGCCT 57.055 32.000 0.00 0.00 41.05 4.58
2081 2246 9.503427 GTAAATTCTACAATAATGTTCACAGCC 57.497 33.333 0.00 0.00 41.05 4.85
2253 2418 4.336153 CCTGCATGATAGTTGTGCATTACA 59.664 41.667 0.00 0.00 46.52 2.41
2314 2479 9.353999 GGAAGGTTAAAGTAAAGTATTGCATTG 57.646 33.333 0.00 0.00 0.00 2.82
2328 2493 3.898482 ACAACTGCAGGAAGGTTAAAGT 58.102 40.909 19.93 0.00 0.00 2.66
2374 2539 2.880268 CAATCACAAGCTGTCCAGTCAA 59.120 45.455 0.00 0.00 0.00 3.18
2430 2606 7.827236 TGTTAAAGTCAGGACCCATAATTAGTG 59.173 37.037 0.00 0.00 0.00 2.74
2444 2620 9.113838 ACAAGATATGCTATTGTTAAAGTCAGG 57.886 33.333 0.00 0.00 35.83 3.86
2962 3138 5.065218 CCATTTCTCTAATGTCTCAAACCCG 59.935 44.000 0.00 0.00 41.74 5.28
3022 3198 6.013032 AGAGATCACCCTTCTCATCTTTCAAA 60.013 38.462 0.00 0.00 41.72 2.69
3168 3344 4.870123 AATTAAATGACAGCAGCCACAA 57.130 36.364 0.00 0.00 0.00 3.33
3274 3450 8.535335 AGCATCAGTAATTATGTAGATACTGGG 58.465 37.037 10.79 6.16 43.35 4.45
3400 3577 5.007682 AGTTGGTCCAGCACGTATTTAAAT 58.992 37.500 8.59 5.89 0.00 1.40
3534 3721 4.207955 TGCAGATACTAAGACGATCAGGT 58.792 43.478 0.00 0.00 0.00 4.00
3763 3950 4.245660 CGTATATCAGGGTGTAATGGCAG 58.754 47.826 0.00 0.00 0.00 4.85
4098 4285 2.044806 ATGAGTCCCGTGCATAGGCC 62.045 60.000 0.00 0.00 40.13 5.19
4113 4300 5.221541 GGAGTAGGTAAGTTCATGGGATGAG 60.222 48.000 0.00 0.00 40.94 2.90
4175 4371 2.761559 TCACTACATGAAACCACGTGG 58.238 47.619 32.83 32.83 36.23 4.94
4197 4393 5.460646 TCCACTTTTAACTAGGAACGTACG 58.539 41.667 15.01 15.01 0.00 3.67
4271 4467 7.615403 AGTGCTTTCTTCTACATTGATACAGA 58.385 34.615 0.00 0.00 0.00 3.41
4281 4477 5.247110 AGGAGATCAAGTGCTTTCTTCTACA 59.753 40.000 0.00 0.00 0.00 2.74
4372 4568 7.391148 TGAGTTTGAAAGACTAAAAGTGCTT 57.609 32.000 0.00 0.00 0.00 3.91
4585 4783 2.561478 TACAAACCTCAGTCCCAAGC 57.439 50.000 0.00 0.00 0.00 4.01
4646 4844 5.046087 ACAAACTTATAGGACCCTACACACC 60.046 44.000 0.00 0.00 0.00 4.16
4687 4885 3.056607 ACCATCACATTGCTTAACCTTGC 60.057 43.478 0.00 0.00 0.00 4.01
4963 5166 2.756760 CTCCCCTTCACACCATGAAATG 59.243 50.000 0.00 0.00 46.80 2.32
4964 5167 2.885554 GCTCCCCTTCACACCATGAAAT 60.886 50.000 0.00 0.00 46.80 2.17
4965 5168 1.547675 GCTCCCCTTCACACCATGAAA 60.548 52.381 0.00 0.00 46.80 2.69
4966 5169 0.038166 GCTCCCCTTCACACCATGAA 59.962 55.000 0.00 0.00 45.39 2.57
4967 5170 1.685224 GCTCCCCTTCACACCATGA 59.315 57.895 0.00 0.00 34.65 3.07
4968 5171 1.379044 GGCTCCCCTTCACACCATG 60.379 63.158 0.00 0.00 0.00 3.66
4969 5172 1.542375 AGGCTCCCCTTCACACCAT 60.542 57.895 0.00 0.00 38.74 3.55
4970 5173 2.121963 AGGCTCCCCTTCACACCA 60.122 61.111 0.00 0.00 38.74 4.17
4982 5185 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
4983 5186 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
4984 5187 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
4985 5188 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
4986 5189 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
4987 5190 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
4988 5191 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
4989 5192 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
4993 5196 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
4994 5197 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
4995 5198 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
4996 5199 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
4997 5200 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
4998 5201 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
4999 5202 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
5000 5203 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
5001 5204 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
5002 5205 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
5003 5206 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
5004 5207 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
5005 5208 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
5006 5209 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
5007 5210 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
5008 5211 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
5020 5223 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
5021 5224 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
5022 5225 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
5023 5226 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
5024 5227 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
5025 5228 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
5026 5229 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
5027 5230 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
5028 5231 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
5029 5232 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
5030 5233 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
5031 5234 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
5032 5235 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
5033 5236 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
5034 5237 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
5035 5238 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
5036 5239 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
5037 5240 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
5038 5241 2.278332 AAAGAGGCTGTTTCCAGGAC 57.722 50.000 3.44 0.00 39.22 3.85
5039 5242 3.650942 TCTTAAAGAGGCTGTTTCCAGGA 59.349 43.478 13.41 0.37 39.22 3.86
5040 5243 4.021102 TCTTAAAGAGGCTGTTTCCAGG 57.979 45.455 13.41 0.00 39.22 4.45
5041 5244 6.015940 ACATTTCTTAAAGAGGCTGTTTCCAG 60.016 38.462 13.41 10.77 41.91 3.86
5042 5245 5.833131 ACATTTCTTAAAGAGGCTGTTTCCA 59.167 36.000 13.41 1.06 0.00 3.53
5043 5246 6.332735 ACATTTCTTAAAGAGGCTGTTTCC 57.667 37.500 13.41 0.00 0.00 3.13
5044 5247 7.362142 CCCTACATTTCTTAAAGAGGCTGTTTC 60.362 40.741 13.41 0.00 0.00 2.78
5045 5248 6.434340 CCCTACATTTCTTAAAGAGGCTGTTT 59.566 38.462 14.46 14.46 0.00 2.83
5046 5249 5.946377 CCCTACATTTCTTAAAGAGGCTGTT 59.054 40.000 0.00 0.00 0.00 3.16
5047 5250 5.250774 TCCCTACATTTCTTAAAGAGGCTGT 59.749 40.000 0.00 0.00 0.00 4.40
5048 5251 5.745227 TCCCTACATTTCTTAAAGAGGCTG 58.255 41.667 0.00 0.00 0.00 4.85
5049 5252 6.388619 TTCCCTACATTTCTTAAAGAGGCT 57.611 37.500 0.00 0.00 0.00 4.58
5050 5253 6.095580 CCTTTCCCTACATTTCTTAAAGAGGC 59.904 42.308 0.00 0.00 0.00 4.70
5051 5254 6.095580 GCCTTTCCCTACATTTCTTAAAGAGG 59.904 42.308 0.00 0.00 0.00 3.69
5052 5255 6.887002 AGCCTTTCCCTACATTTCTTAAAGAG 59.113 38.462 0.00 0.00 0.00 2.85
5053 5256 6.659242 CAGCCTTTCCCTACATTTCTTAAAGA 59.341 38.462 0.00 0.00 0.00 2.52
5054 5257 6.625960 GCAGCCTTTCCCTACATTTCTTAAAG 60.626 42.308 0.00 0.00 0.00 1.85
5055 5258 5.185056 GCAGCCTTTCCCTACATTTCTTAAA 59.815 40.000 0.00 0.00 0.00 1.52
5056 5259 4.705023 GCAGCCTTTCCCTACATTTCTTAA 59.295 41.667 0.00 0.00 0.00 1.85
5057 5260 4.270008 GCAGCCTTTCCCTACATTTCTTA 58.730 43.478 0.00 0.00 0.00 2.10
5058 5261 3.092301 GCAGCCTTTCCCTACATTTCTT 58.908 45.455 0.00 0.00 0.00 2.52
5059 5262 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
5060 5263 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
5061 5264 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
5062 5265 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
5063 5266 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
5064 5267 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
5065 5268 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
5066 5269 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
5067 5270 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
5068 5271 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
5069 5272 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
5070 5273 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
5071 5274 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
5072 5275 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
5073 5276 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
5074 5277 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
5075 5278 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
5076 5279 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
5077 5280 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
5078 5281 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
5079 5282 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
5089 5292 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
5090 5293 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
5091 5294 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
5092 5295 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
5093 5296 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
5094 5297 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
5095 5298 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
5096 5299 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
5097 5300 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
5098 5301 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
5099 5302 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
5100 5303 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
5101 5304 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
5102 5305 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
5103 5306 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
5104 5307 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
5105 5308 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
5106 5309 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
5107 5310 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
5119 5322 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
5122 5325 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
5123 5326 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
5124 5327 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
5125 5328 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
5131 5334 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
5132 5335 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
5133 5336 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
5134 5337 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
5135 5338 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
5147 5350 6.654582 ACCATGAAATTGATAAAAAGGGCAAC 59.345 34.615 0.00 0.00 0.00 4.17
5148 5351 6.654161 CACCATGAAATTGATAAAAAGGGCAA 59.346 34.615 0.00 0.00 0.00 4.52
5149 5352 6.171921 CACCATGAAATTGATAAAAAGGGCA 58.828 36.000 0.00 0.00 0.00 5.36
5150 5353 6.172630 ACACCATGAAATTGATAAAAAGGGC 58.827 36.000 0.00 0.00 0.00 5.19
5151 5354 7.614494 AGACACCATGAAATTGATAAAAAGGG 58.386 34.615 0.00 0.00 0.00 3.95
5206 5409 4.212214 ACGCTTTTCAGTCTCAAGAATGAC 59.788 41.667 9.49 0.00 46.92 3.06
5408 5615 4.439305 TTCAGTTGCAATTATGACAGGC 57.561 40.909 0.59 0.00 0.00 4.85
5418 5625 7.945134 AGAAGAATAACACTTTCAGTTGCAAT 58.055 30.769 0.59 0.00 0.00 3.56
5821 6034 1.153958 CGTCTCATGTCAGCAGCGA 60.154 57.895 0.00 0.00 0.00 4.93
5852 6065 1.066143 CACCGGAAACATAGGCAGTCT 60.066 52.381 9.46 0.00 0.00 3.24
5892 6105 9.595823 AACATCTATATACAGCGTAGTTTGTTT 57.404 29.630 0.00 0.00 0.00 2.83
6095 6311 7.487822 TTTTATTTCAGGGGCATACATTTCA 57.512 32.000 0.00 0.00 0.00 2.69
6096 6312 7.657354 GGATTTTATTTCAGGGGCATACATTTC 59.343 37.037 0.00 0.00 0.00 2.17
6097 6313 7.348011 AGGATTTTATTTCAGGGGCATACATTT 59.652 33.333 0.00 0.00 0.00 2.32
6098 6314 6.845975 AGGATTTTATTTCAGGGGCATACATT 59.154 34.615 0.00 0.00 0.00 2.71
6099 6315 6.384603 AGGATTTTATTTCAGGGGCATACAT 58.615 36.000 0.00 0.00 0.00 2.29
6100 6316 5.776358 AGGATTTTATTTCAGGGGCATACA 58.224 37.500 0.00 0.00 0.00 2.29
6101 6317 5.243954 GGAGGATTTTATTTCAGGGGCATAC 59.756 44.000 0.00 0.00 0.00 2.39
6102 6318 5.103301 TGGAGGATTTTATTTCAGGGGCATA 60.103 40.000 0.00 0.00 0.00 3.14
6103 6319 4.226384 GGAGGATTTTATTTCAGGGGCAT 58.774 43.478 0.00 0.00 0.00 4.40
6104 6320 3.012274 TGGAGGATTTTATTTCAGGGGCA 59.988 43.478 0.00 0.00 0.00 5.36
6105 6321 3.642141 TGGAGGATTTTATTTCAGGGGC 58.358 45.455 0.00 0.00 0.00 5.80
6106 6322 5.211201 ACATGGAGGATTTTATTTCAGGGG 58.789 41.667 0.00 0.00 0.00 4.79
6107 6323 8.482852 AATACATGGAGGATTTTATTTCAGGG 57.517 34.615 0.00 0.00 0.00 4.45
6108 6324 9.359653 AGAATACATGGAGGATTTTATTTCAGG 57.640 33.333 0.00 0.00 0.00 3.86
6158 6389 4.705110 TGGTCAGAGAACAAATGGAAGA 57.295 40.909 0.00 0.00 0.00 2.87
6191 6422 1.494960 AGAAAGCCCTAGCCTCTGAG 58.505 55.000 0.00 0.00 41.25 3.35
6224 6456 2.034685 TGCTCTTAATGATCTCCGGACG 59.965 50.000 0.00 0.00 0.00 4.79
6355 6587 4.202461 TGCAACTTAAACCTCTGAGGATGT 60.202 41.667 29.71 15.58 37.67 3.06
6398 6630 2.637165 ACCTCTGAGAATGGACCCTTT 58.363 47.619 6.17 0.00 0.00 3.11
6463 6696 1.669265 GGGTGCATTTAAGCTCGGTAC 59.331 52.381 0.00 0.00 34.99 3.34
6464 6697 1.557832 AGGGTGCATTTAAGCTCGGTA 59.442 47.619 0.00 0.00 34.99 4.02
6465 6698 0.328258 AGGGTGCATTTAAGCTCGGT 59.672 50.000 0.00 0.00 34.99 4.69
6466 6699 0.734889 CAGGGTGCATTTAAGCTCGG 59.265 55.000 0.00 0.00 34.99 4.63
6535 6771 6.096695 ACATTTGTCAAAGTTTACCACACAC 58.903 36.000 4.03 0.00 0.00 3.82
6536 6772 6.274157 ACATTTGTCAAAGTTTACCACACA 57.726 33.333 4.03 0.00 0.00 3.72
6537 6773 6.806120 GACATTTGTCAAAGTTTACCACAC 57.194 37.500 4.03 0.00 44.18 3.82
6560 6796 6.798476 CGTGCTGAAATTTGGTATGCATATAG 59.202 38.462 10.16 0.00 0.00 1.31
6591 6827 4.620589 TTGCCACAATTTCCATGAATGT 57.379 36.364 0.00 0.00 0.00 2.71
6618 6854 3.037549 TGAAAACATTTTGGAGTGCCCT 58.962 40.909 0.00 0.00 35.38 5.19
6630 6866 8.203485 TCCAAAGATGCTAGTTTTGAAAACATT 58.797 29.630 21.34 5.77 34.55 2.71
6681 6917 3.250762 ACAACATGACATTCGTGGAAGTG 59.749 43.478 0.00 0.00 37.70 3.16
6689 6925 3.541071 TTCAGCACAACATGACATTCG 57.459 42.857 0.00 0.00 0.00 3.34
6699 6935 8.812329 TGTATGTTTGTAAAATTTCAGCACAAC 58.188 29.630 0.00 1.16 0.00 3.32
6701 6937 8.932945 TTGTATGTTTGTAAAATTTCAGCACA 57.067 26.923 0.00 0.00 0.00 4.57
6786 7023 5.782845 TGCCCCCTAATGAACAGTAAAATTT 59.217 36.000 0.00 0.00 0.00 1.82
6789 7026 4.390129 TGCCCCCTAATGAACAGTAAAA 57.610 40.909 0.00 0.00 0.00 1.52
6796 7033 2.101415 GCTCAAATGCCCCCTAATGAAC 59.899 50.000 0.00 0.00 0.00 3.18
6809 7046 2.045045 TGCTCCCGGGCTCAAATG 60.045 61.111 18.49 0.33 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.