Multiple sequence alignment - TraesCS5B01G200200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G200200 chr5B 100.000 6228 0 0 1 6228 361543748 361537521 0.000000e+00 11502.0
1 TraesCS5B01G200200 chr5D 94.155 3336 144 28 2266 5569 313841522 313838206 0.000000e+00 5033.0
2 TraesCS5B01G200200 chr5D 91.371 1437 76 14 826 2253 313842989 313841592 0.000000e+00 1923.0
3 TraesCS5B01G200200 chr5D 95.618 251 9 2 5929 6178 499236711 499236960 9.720000e-108 401.0
4 TraesCS5B01G200200 chr5D 87.786 131 9 3 5568 5697 499236458 499236582 5.030000e-31 147.0
5 TraesCS5B01G200200 chr5D 91.667 72 5 1 4614 4684 313839198 313839127 1.430000e-16 99.0
6 TraesCS5B01G200200 chr5D 100.000 48 0 0 6181 6228 499237781 499237828 8.600000e-14 89.8
7 TraesCS5B01G200200 chr5A 94.531 2176 95 16 3410 5569 407937577 407935410 0.000000e+00 3338.0
8 TraesCS5B01G200200 chr5A 91.244 1439 77 13 826 2253 407940422 407939022 0.000000e+00 1914.0
9 TraesCS5B01G200200 chr5A 93.217 1150 51 12 2266 3401 407938952 407937816 0.000000e+00 1666.0
10 TraesCS5B01G200200 chr5A 88.750 80 4 3 4991 5065 407786928 407786849 6.650000e-15 93.5
11 TraesCS5B01G200200 chr7A 91.453 819 62 6 1 816 141021605 141022418 0.000000e+00 1118.0
12 TraesCS5B01G200200 chr7A 91.331 819 63 7 1 816 140755115 140755928 0.000000e+00 1112.0
13 TraesCS5B01G200200 chr7A 91.209 819 63 7 1 816 141890025 141890837 0.000000e+00 1105.0
14 TraesCS5B01G200200 chr7A 90.865 821 62 11 1 816 141299289 141300101 0.000000e+00 1088.0
15 TraesCS5B01G200200 chr7A 90.354 819 69 7 1 816 141629260 141630071 0.000000e+00 1066.0
16 TraesCS5B01G200200 chr7A 94.737 247 13 0 5932 6178 166724346 166724100 9.790000e-103 385.0
17 TraesCS5B01G200200 chr7A 90.837 251 20 3 4660 4910 713193047 713193294 3.600000e-87 333.0
18 TraesCS5B01G200200 chr7A 86.854 213 23 3 4410 4618 713192835 713193046 3.750000e-57 233.0
19 TraesCS5B01G200200 chr7A 95.614 114 3 1 5820 5931 166724426 166724313 1.380000e-41 182.0
20 TraesCS5B01G200200 chr7A 91.129 124 11 0 5696 5819 685117599 685117476 1.070000e-37 169.0
21 TraesCS5B01G200200 chr7A 89.516 124 12 1 5696 5819 166724507 166724385 8.360000e-34 156.0
22 TraesCS5B01G200200 chr7A 91.228 114 8 1 5820 5931 685117517 685117404 3.010000e-33 154.0
23 TraesCS5B01G200200 chr7A 91.489 94 5 2 4820 4910 5685467 5685374 6.550000e-25 126.0
24 TraesCS5B01G200200 chr7A 95.000 60 3 0 5636 5695 685117630 685117571 1.850000e-15 95.3
25 TraesCS5B01G200200 chr7A 95.652 46 2 0 6183 6228 685116549 685116504 2.410000e-09 75.0
26 TraesCS5B01G200200 chr4A 91.087 819 65 6 1 816 588596731 588597544 0.000000e+00 1101.0
27 TraesCS5B01G200200 chr4A 90.833 240 22 0 4671 4910 276799880 276799641 7.790000e-84 322.0
28 TraesCS5B01G200200 chr4A 89.447 199 17 3 4405 4600 276800106 276799909 1.340000e-61 248.0
29 TraesCS5B01G200200 chr4A 91.057 123 11 0 5697 5819 676453481 676453603 3.860000e-37 167.0
30 TraesCS5B01G200200 chr7B 91.847 785 60 4 1 784 433301541 433300760 0.000000e+00 1092.0
31 TraesCS5B01G200200 chr7B 91.129 124 11 0 5696 5819 595164932 595164809 1.070000e-37 169.0
32 TraesCS5B01G200200 chr7B 93.043 115 5 2 5820 5931 353632049 353632163 1.390000e-36 165.0
33 TraesCS5B01G200200 chr7B 93.443 61 4 0 5636 5696 612892341 612892281 2.390000e-14 91.6
34 TraesCS5B01G200200 chr6A 92.400 250 19 0 5929 6178 86440883 86441132 2.140000e-94 357.0
35 TraesCS5B01G200200 chr6A 91.837 245 20 0 5934 6178 20279804 20280048 5.980000e-90 342.0
36 TraesCS5B01G200200 chr2A 92.430 251 17 2 4660 4910 23543615 23543863 2.140000e-94 357.0
37 TraesCS5B01G200200 chr2A 93.043 115 6 1 5821 5933 10489176 10489290 3.860000e-37 167.0
38 TraesCS5B01G200200 chr2A 89.600 125 11 2 5696 5819 24891293 24891170 2.320000e-34 158.0
39 TraesCS5B01G200200 chr2A 100.000 46 0 0 6181 6226 205199100 205199145 1.110000e-12 86.1
40 TraesCS5B01G200200 chrUn 92.713 247 17 1 5932 6178 34091560 34091315 7.680000e-94 355.0
41 TraesCS5B01G200200 chrUn 92.400 250 18 1 5929 6178 291020506 291020754 7.680000e-94 355.0
42 TraesCS5B01G200200 chrUn 87.838 222 20 6 4405 4621 313522583 313522802 2.880000e-63 254.0
43 TraesCS5B01G200200 chrUn 87.838 222 20 6 4405 4621 324875406 324875625 2.880000e-63 254.0
44 TraesCS5B01G200200 chrUn 87.444 223 19 8 4405 4621 1286401 1286620 1.340000e-61 248.0
45 TraesCS5B01G200200 chrUn 89.764 127 9 1 5571 5697 34091817 34091695 6.460000e-35 159.0
46 TraesCS5B01G200200 chrUn 90.323 124 8 1 5571 5694 291020252 291020371 6.460000e-35 159.0
47 TraesCS5B01G200200 chrUn 91.304 115 7 2 5820 5931 34091641 34091527 3.010000e-33 154.0
48 TraesCS5B01G200200 chrUn 91.304 115 7 2 5820 5931 291020428 291020542 3.010000e-33 154.0
49 TraesCS5B01G200200 chrUn 97.917 48 1 0 6181 6228 34090490 34090443 4.000000e-12 84.2
50 TraesCS5B01G200200 chrUn 97.917 48 1 0 6181 6228 291021579 291021626 4.000000e-12 84.2
51 TraesCS5B01G200200 chr6D 92.000 250 20 0 5929 6178 20263961 20264210 9.930000e-93 351.0
52 TraesCS5B01G200200 chr6D 94.737 114 4 1 5820 5931 42550469 42550356 6.420000e-40 176.0
53 TraesCS5B01G200200 chr6D 92.000 125 9 1 5696 5819 20263801 20263925 2.310000e-39 174.0
54 TraesCS5B01G200200 chr6D 92.000 125 6 1 5571 5695 20263709 20263829 8.300000e-39 172.0
55 TraesCS5B01G200200 chr6D 93.043 115 5 2 5820 5931 20263883 20263997 1.390000e-36 165.0
56 TraesCS5B01G200200 chr2B 89.850 266 25 2 4645 4910 42574885 42575148 2.150000e-89 340.0
57 TraesCS5B01G200200 chr3A 91.803 244 15 3 4671 4910 730973114 730973356 1.000000e-87 335.0
58 TraesCS5B01G200200 chr3A 91.093 247 21 1 5933 6178 688285713 688285959 3.600000e-87 333.0
59 TraesCS5B01G200200 chr3B 90.800 250 21 2 5929 6178 72452294 72452541 3.600000e-87 333.0
60 TraesCS5B01G200200 chr3B 87.943 141 12 2 5554 5693 72452022 72452158 1.800000e-35 161.0
61 TraesCS5B01G200200 chr3B 91.228 114 7 2 5821 5931 72452217 72452330 1.080000e-32 152.0
62 TraesCS5B01G200200 chr6B 91.393 244 16 3 4671 4910 565752596 565752838 4.650000e-86 329.0
63 TraesCS5B01G200200 chr6B 93.548 124 8 0 5696 5819 499005985 499006108 1.070000e-42 185.0
64 TraesCS5B01G200200 chr6B 96.667 60 2 0 5638 5697 499005956 499006015 3.970000e-17 100.0
65 TraesCS5B01G200200 chr4B 89.098 266 26 2 4645 4910 144304798 144305060 1.670000e-85 327.0
66 TraesCS5B01G200200 chr4B 85.153 229 28 5 4397 4621 144304611 144304837 4.860000e-56 230.0
67 TraesCS5B01G200200 chr3D 87.330 221 23 4 4405 4621 564547738 564547519 1.340000e-61 248.0
68 TraesCS5B01G200200 chr3D 90.323 124 12 0 5696 5819 559032661 559032538 5.000000e-36 163.0
69 TraesCS5B01G200200 chr1B 88.889 126 12 2 5696 5819 16854906 16854781 3.010000e-33 154.0
70 TraesCS5B01G200200 chr1B 95.161 62 3 0 5636 5697 16854937 16854876 1.430000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G200200 chr5B 361537521 361543748 6227 True 11502.000000 11502 100.000000 1 6228 1 chr5B.!!$R1 6227
1 TraesCS5B01G200200 chr5D 313838206 313842989 4783 True 2351.666667 5033 92.397667 826 5569 3 chr5D.!!$R1 4743
2 TraesCS5B01G200200 chr5D 499236458 499237828 1370 False 212.600000 401 94.468000 5568 6228 3 chr5D.!!$F1 660
3 TraesCS5B01G200200 chr5A 407935410 407940422 5012 True 2306.000000 3338 92.997333 826 5569 3 chr5A.!!$R2 4743
4 TraesCS5B01G200200 chr7A 141021605 141022418 813 False 1118.000000 1118 91.453000 1 816 1 chr7A.!!$F2 815
5 TraesCS5B01G200200 chr7A 140755115 140755928 813 False 1112.000000 1112 91.331000 1 816 1 chr7A.!!$F1 815
6 TraesCS5B01G200200 chr7A 141890025 141890837 812 False 1105.000000 1105 91.209000 1 816 1 chr7A.!!$F5 815
7 TraesCS5B01G200200 chr7A 141299289 141300101 812 False 1088.000000 1088 90.865000 1 816 1 chr7A.!!$F3 815
8 TraesCS5B01G200200 chr7A 141629260 141630071 811 False 1066.000000 1066 90.354000 1 816 1 chr7A.!!$F4 815
9 TraesCS5B01G200200 chr4A 588596731 588597544 813 False 1101.000000 1101 91.087000 1 816 1 chr4A.!!$F1 815
10 TraesCS5B01G200200 chr7B 433300760 433301541 781 True 1092.000000 1092 91.847000 1 784 1 chr7B.!!$R1 783
11 TraesCS5B01G200200 chr6D 20263709 20264210 501 False 215.500000 351 92.260750 5571 6178 4 chr6D.!!$F1 607
12 TraesCS5B01G200200 chr3B 72452022 72452541 519 False 215.333333 333 89.990333 5554 6178 3 chr3B.!!$F1 624

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
321 324 0.121197 TCCCCCATCTCCTTGACCTT 59.879 55.0 0.00 0.00 0.00 3.50 F
1144 1157 0.032017 ACTACCTCTCCCGCTTGGAT 60.032 55.0 0.00 0.00 44.07 3.41 F
2163 2179 0.034186 TGCACATGCTTAAGGGGGAG 60.034 55.0 4.29 0.00 42.66 4.30 F
3194 3282 0.039527 GGGCGTTTTGTAGCTTGTGG 60.040 55.0 0.00 0.00 0.00 4.17 F
3576 3894 0.794229 GATGCCACGTCAATGCGTTG 60.794 55.0 12.66 12.66 43.83 4.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2262 2278 0.250640 AAGTGGCTGAGGCAGAACAG 60.251 55.000 9.68 0.0 39.19 3.16 R
2353 2427 0.108615 GAGTCACATCACCCGTCCAG 60.109 60.000 0.00 0.0 0.00 3.86 R
4100 4419 3.214328 GGCTTGTTTTCTCAGAGGTTGA 58.786 45.455 0.00 0.0 0.00 3.18 R
5142 5477 1.477923 CCGTTCAACTTTGGGAAGGGA 60.478 52.381 7.19 0.0 46.69 4.20 R
5569 5904 2.295253 AGGCACGTGTATGCTTCTAC 57.705 50.000 18.38 0.0 45.38 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 109 1.203237 TCTGCTAGATCCTCCCCCATC 60.203 57.143 0.00 0.00 0.00 3.51
111 113 0.409876 TAGATCCTCCCCCATCTCCG 59.590 60.000 0.00 0.00 31.57 4.63
131 133 2.682856 CGTACACATCATTCCCAAAGGG 59.317 50.000 0.00 0.00 46.11 3.95
146 148 7.234661 TCCCAAAGGGACATTAAAAATACAC 57.765 36.000 0.00 0.00 46.17 2.90
163 165 5.708736 ATACACACCCATATTGGAACTGA 57.291 39.130 0.00 0.00 40.96 3.41
194 196 7.495901 ACACATAATCATCTAGTGTCTTCCTG 58.504 38.462 0.00 0.00 38.98 3.86
277 280 2.741486 TTTCGTTTCCCGCCTCCTGG 62.741 60.000 0.00 0.00 36.19 4.45
298 301 5.309638 TGGTGGAACATAAACAGAAATCGA 58.690 37.500 0.00 0.00 44.52 3.59
321 324 0.121197 TCCCCCATCTCCTTGACCTT 59.879 55.000 0.00 0.00 0.00 3.50
418 421 1.000896 CTTCCCCATCGCCTTTGGT 60.001 57.895 0.00 0.00 31.99 3.67
420 423 0.923358 TTCCCCATCGCCTTTGGTAT 59.077 50.000 0.00 0.00 31.99 2.73
424 427 2.635915 CCCCATCGCCTTTGGTATACTA 59.364 50.000 2.25 0.00 31.99 1.82
470 473 1.229658 CCCACCTTGACTCCCCTCT 60.230 63.158 0.00 0.00 0.00 3.69
481 484 0.325110 CTCCCCTCTTCTCTGCCTCA 60.325 60.000 0.00 0.00 0.00 3.86
484 487 1.566211 CCCTCTTCTCTGCCTCAGAA 58.434 55.000 0.00 0.00 40.18 3.02
516 519 4.873746 TCTTCAACATTCCTTCGACTCT 57.126 40.909 0.00 0.00 0.00 3.24
522 525 2.494073 ACATTCCTTCGACTCTCTCCAC 59.506 50.000 0.00 0.00 0.00 4.02
557 561 3.923864 AAGCTCCCGTGCGTCACA 61.924 61.111 9.95 0.00 38.13 3.58
564 568 2.022129 CCGTGCGTCACAGGAGAAC 61.022 63.158 9.95 0.00 36.20 3.01
565 569 1.299850 CGTGCGTCACAGGAGAACA 60.300 57.895 9.95 0.00 36.20 3.18
567 571 1.295792 GTGCGTCACAGGAGAACAAA 58.704 50.000 5.30 0.00 34.08 2.83
568 572 1.261619 GTGCGTCACAGGAGAACAAAG 59.738 52.381 5.30 0.00 34.08 2.77
569 573 0.868406 GCGTCACAGGAGAACAAAGG 59.132 55.000 0.00 0.00 0.00 3.11
575 580 5.221048 CGTCACAGGAGAACAAAGGAAAAAT 60.221 40.000 0.00 0.00 0.00 1.82
592 597 2.459555 AATGCTAGGGATTTGGTGGG 57.540 50.000 0.00 0.00 0.00 4.61
593 598 1.308877 ATGCTAGGGATTTGGTGGGT 58.691 50.000 0.00 0.00 0.00 4.51
645 650 3.719121 CTCTGGTGGAGGTGGGAG 58.281 66.667 0.00 0.00 38.35 4.30
674 679 2.115911 CGGACGAGAGAGGGAGGTG 61.116 68.421 0.00 0.00 0.00 4.00
678 683 2.041405 GAGAGAGGGAGGTGGGGG 60.041 72.222 0.00 0.00 0.00 5.40
763 768 0.901580 ACGAGGAGGCGAACCCTAAA 60.902 55.000 0.00 0.00 46.60 1.85
771 776 2.003672 CGAACCCTAAATCGCCACG 58.996 57.895 0.00 0.00 31.71 4.94
784 789 1.587613 GCCACGAGAAGCGCTAGAG 60.588 63.158 12.05 5.35 46.04 2.43
786 791 0.452184 CCACGAGAAGCGCTAGAGAA 59.548 55.000 12.05 0.00 46.04 2.87
787 792 1.135373 CCACGAGAAGCGCTAGAGAAA 60.135 52.381 12.05 0.00 46.04 2.52
788 793 2.181205 CACGAGAAGCGCTAGAGAAAG 58.819 52.381 12.05 1.12 46.04 2.62
789 794 2.085320 ACGAGAAGCGCTAGAGAAAGA 58.915 47.619 12.05 0.00 46.04 2.52
790 795 2.096819 ACGAGAAGCGCTAGAGAAAGAG 59.903 50.000 12.05 0.00 46.04 2.85
791 796 2.353269 CGAGAAGCGCTAGAGAAAGAGA 59.647 50.000 12.05 0.00 0.00 3.10
793 798 2.425668 AGAAGCGCTAGAGAAAGAGACC 59.574 50.000 12.05 0.00 0.00 3.85
794 799 2.137810 AGCGCTAGAGAAAGAGACCT 57.862 50.000 8.99 0.00 0.00 3.85
795 800 3.284793 AGCGCTAGAGAAAGAGACCTA 57.715 47.619 8.99 0.00 0.00 3.08
798 803 2.619646 CGCTAGAGAAAGAGACCTACCC 59.380 54.545 0.00 0.00 0.00 3.69
824 829 3.708210 GGGACGGACCTGTGATCA 58.292 61.111 0.00 0.00 38.98 2.92
838 843 5.891551 ACCTGTGATCAAGTTGTTTTACCTT 59.108 36.000 0.00 0.00 0.00 3.50
842 847 4.646945 TGATCAAGTTGTTTTACCTTGCCA 59.353 37.500 2.11 0.00 36.41 4.92
857 862 2.423446 CCAGATAGGGGCGCAGAC 59.577 66.667 10.83 0.00 0.00 3.51
880 885 2.831597 GCAATGAGCAAACCAAGCC 58.168 52.632 0.00 0.00 44.79 4.35
886 891 0.463620 GAGCAAACCAAGCCAAACCA 59.536 50.000 0.00 0.00 0.00 3.67
927 932 7.493971 CAGTTAATCTCAACCATCGATTTCTCT 59.506 37.037 0.00 0.00 0.00 3.10
940 945 1.461091 TTTCTCTCACTGGACGGCGT 61.461 55.000 14.65 14.65 0.00 5.68
960 965 1.429148 GGATTGGCGATCGTCACCAC 61.429 60.000 24.15 15.71 35.49 4.16
1144 1157 0.032017 ACTACCTCTCCCGCTTGGAT 60.032 55.000 0.00 0.00 44.07 3.41
1186 1199 4.200283 GCCGACCTCGCCTCTCTG 62.200 72.222 0.00 0.00 38.18 3.35
1300 1313 2.122167 CCTCTCCGACTTCCTCCCG 61.122 68.421 0.00 0.00 0.00 5.14
1301 1314 1.378778 CTCTCCGACTTCCTCCCGT 60.379 63.158 0.00 0.00 0.00 5.28
1306 1319 2.110967 CGACTTCCTCCCGTCGCTA 61.111 63.158 0.00 0.00 45.08 4.26
1407 1420 1.962402 GCCTTCCTCTCTGCACTCCTA 60.962 57.143 0.00 0.00 0.00 2.94
1416 1429 1.899814 TCTGCACTCCTACCGAACAAT 59.100 47.619 0.00 0.00 0.00 2.71
1424 1437 6.055588 CACTCCTACCGAACAATTTGGATAT 58.944 40.000 1.68 0.00 37.65 1.63
1426 1439 7.878127 CACTCCTACCGAACAATTTGGATATAT 59.122 37.037 1.68 0.00 37.65 0.86
1427 1440 8.437575 ACTCCTACCGAACAATTTGGATATATT 58.562 33.333 1.68 0.00 37.65 1.28
1428 1441 9.284968 CTCCTACCGAACAATTTGGATATATTT 57.715 33.333 1.68 0.00 37.65 1.40
1488 1501 1.301716 GCGTTCCTGCAGGAGTTCA 60.302 57.895 33.16 17.93 46.36 3.18
1572 1585 1.078567 GCTGAGAAGGTGAGCTGGG 60.079 63.158 0.00 0.00 0.00 4.45
1577 1590 1.003233 GAAGGTGAGCTGGGTGGTC 60.003 63.158 0.00 0.00 43.03 4.02
1593 1606 0.103390 GGTCGGTTGGTTTGGGTTTG 59.897 55.000 0.00 0.00 0.00 2.93
1594 1607 0.818938 GTCGGTTGGTTTGGGTTTGT 59.181 50.000 0.00 0.00 0.00 2.83
1595 1608 2.022934 GTCGGTTGGTTTGGGTTTGTA 58.977 47.619 0.00 0.00 0.00 2.41
1596 1609 2.426381 GTCGGTTGGTTTGGGTTTGTAA 59.574 45.455 0.00 0.00 0.00 2.41
1628 1641 2.413142 GGGCTCATGTCTGCTTGCC 61.413 63.158 0.00 0.00 39.61 4.52
1650 1663 4.141620 CCTATTGTCTTGGTGTAGGCAGAT 60.142 45.833 0.00 0.00 30.28 2.90
1653 1666 3.708451 TGTCTTGGTGTAGGCAGATAGA 58.292 45.455 0.00 0.00 0.00 1.98
1716 1729 1.004745 GCTGGGTCCTTCCTGATGAAA 59.995 52.381 0.00 0.00 36.25 2.69
1722 1735 4.218635 GGGTCCTTCCTGATGAAAGTTTTC 59.781 45.833 0.00 0.00 35.70 2.29
1758 1771 6.325596 GGTATGGAATTCTGAAAGCTTTGTC 58.674 40.000 18.30 3.47 0.00 3.18
1761 1774 4.279169 TGGAATTCTGAAAGCTTTGTCTGG 59.721 41.667 18.30 2.06 0.00 3.86
1774 1787 2.636647 TGTCTGGTGTGCATTCTTGA 57.363 45.000 0.00 0.00 0.00 3.02
1782 1795 4.771577 TGGTGTGCATTCTTGAATGGTAAT 59.228 37.500 20.59 0.00 0.00 1.89
1788 1801 8.970020 TGTGCATTCTTGAATGGTAATAAGAAT 58.030 29.630 20.59 5.45 45.63 2.40
1803 1816 9.331282 GGTAATAAGAATTAGCAAGTGTCTGAT 57.669 33.333 3.19 0.00 42.87 2.90
1806 1819 6.414408 AAGAATTAGCAAGTGTCTGATTCG 57.586 37.500 11.11 0.00 39.83 3.34
1807 1820 5.724328 AGAATTAGCAAGTGTCTGATTCGA 58.276 37.500 11.11 0.00 39.83 3.71
1808 1821 6.166279 AGAATTAGCAAGTGTCTGATTCGAA 58.834 36.000 0.00 0.00 39.83 3.71
1809 1822 6.820656 AGAATTAGCAAGTGTCTGATTCGAAT 59.179 34.615 11.20 11.20 39.83 3.34
1810 1823 6.992063 ATTAGCAAGTGTCTGATTCGAATT 57.008 33.333 12.81 0.00 0.00 2.17
1811 1824 4.675190 AGCAAGTGTCTGATTCGAATTG 57.325 40.909 12.81 8.75 0.00 2.32
1812 1825 4.318332 AGCAAGTGTCTGATTCGAATTGA 58.682 39.130 12.81 10.94 0.00 2.57
1813 1826 4.391216 AGCAAGTGTCTGATTCGAATTGAG 59.609 41.667 12.81 11.39 0.00 3.02
1814 1827 4.645956 CAAGTGTCTGATTCGAATTGAGC 58.354 43.478 12.81 9.43 0.00 4.26
1815 1828 3.930336 AGTGTCTGATTCGAATTGAGCA 58.070 40.909 12.81 10.47 0.00 4.26
1816 1829 4.318332 AGTGTCTGATTCGAATTGAGCAA 58.682 39.130 12.81 1.22 0.00 3.91
1817 1830 4.756642 AGTGTCTGATTCGAATTGAGCAAA 59.243 37.500 12.81 0.00 0.00 3.68
1818 1831 5.239306 AGTGTCTGATTCGAATTGAGCAAAA 59.761 36.000 12.81 0.00 0.00 2.44
1819 1832 5.914635 GTGTCTGATTCGAATTGAGCAAAAA 59.085 36.000 12.81 0.00 0.00 1.94
1871 1884 1.068125 GTGATGAGCTTGTGCAATGCA 60.068 47.619 2.72 2.72 42.74 3.96
1883 1896 1.654954 GCAATGCAGGTGCCTCAGAG 61.655 60.000 12.98 0.00 41.18 3.35
1899 1912 4.067896 CTCAGAGAGGTGCTTAGCAAAAA 58.932 43.478 9.05 0.00 41.47 1.94
1900 1913 4.067896 TCAGAGAGGTGCTTAGCAAAAAG 58.932 43.478 9.05 0.00 41.47 2.27
1901 1914 3.817647 CAGAGAGGTGCTTAGCAAAAAGT 59.182 43.478 9.05 0.00 41.47 2.66
1902 1915 3.817647 AGAGAGGTGCTTAGCAAAAAGTG 59.182 43.478 9.05 0.00 41.47 3.16
1903 1916 3.815401 GAGAGGTGCTTAGCAAAAAGTGA 59.185 43.478 9.05 0.00 41.47 3.41
1904 1917 4.207165 AGAGGTGCTTAGCAAAAAGTGAA 58.793 39.130 9.05 0.00 41.47 3.18
1911 1924 7.119360 GTGCTTAGCAAAAAGTGAACATTTTC 58.881 34.615 9.05 0.00 41.47 2.29
1943 1956 4.082125 CAAAGGGCAGACAAGGTTCTTAT 58.918 43.478 0.00 0.00 0.00 1.73
1948 1961 4.280929 GGGCAGACAAGGTTCTTATTTTGT 59.719 41.667 0.00 0.00 36.54 2.83
1949 1962 5.475564 GGGCAGACAAGGTTCTTATTTTGTA 59.524 40.000 0.00 0.00 34.18 2.41
1950 1963 6.379386 GGCAGACAAGGTTCTTATTTTGTAC 58.621 40.000 0.00 0.00 34.18 2.90
1995 2008 2.679837 CCAGTGCTTACCATGTGCTTAG 59.320 50.000 0.00 0.00 0.00 2.18
2025 2038 3.795623 TGGCTCTTGTCGGTAGATAAC 57.204 47.619 0.00 0.00 0.00 1.89
2028 2041 3.119245 GGCTCTTGTCGGTAGATAACACA 60.119 47.826 0.00 0.00 0.00 3.72
2030 2043 5.109903 GCTCTTGTCGGTAGATAACACAAT 58.890 41.667 0.00 0.00 0.00 2.71
2055 2068 3.944015 TCTAAGCACCTACGTAGAGGAAC 59.056 47.826 24.15 8.48 39.15 3.62
2071 2084 4.042187 AGAGGAACTTGCATTGGAGTAGTT 59.958 41.667 0.00 0.00 41.55 2.24
2072 2085 4.074970 AGGAACTTGCATTGGAGTAGTTG 58.925 43.478 2.54 0.00 27.25 3.16
2133 2146 3.548587 CTTCAAGCGTGACATGTTGAAG 58.451 45.455 23.27 23.27 45.57 3.02
2151 2164 4.012319 GAAGCATTCTGTACTGCACATG 57.988 45.455 7.48 0.00 43.23 3.21
2153 2166 1.741706 GCATTCTGTACTGCACATGCT 59.258 47.619 16.92 0.00 42.66 3.79
2154 2167 2.163010 GCATTCTGTACTGCACATGCTT 59.837 45.455 16.92 0.00 42.66 3.91
2155 2168 3.374988 GCATTCTGTACTGCACATGCTTA 59.625 43.478 16.92 0.00 42.66 3.09
2156 2169 4.142622 GCATTCTGTACTGCACATGCTTAA 60.143 41.667 16.92 0.00 42.66 1.85
2157 2170 5.566623 CATTCTGTACTGCACATGCTTAAG 58.433 41.667 5.31 0.00 42.66 1.85
2158 2171 3.599343 TCTGTACTGCACATGCTTAAGG 58.401 45.455 4.29 0.00 42.66 2.69
2163 2179 0.034186 TGCACATGCTTAAGGGGGAG 60.034 55.000 4.29 0.00 42.66 4.30
2238 2254 4.592778 AGGGTGGTGTTTTTGCATAGAAAT 59.407 37.500 0.00 0.00 0.00 2.17
2240 2256 6.268847 AGGGTGGTGTTTTTGCATAGAAATTA 59.731 34.615 0.00 0.00 0.00 1.40
2253 2269 9.719355 TTGCATAGAAATTACTCTGAAGTTACA 57.281 29.630 0.00 0.00 36.92 2.41
2254 2270 9.151471 TGCATAGAAATTACTCTGAAGTTACAC 57.849 33.333 0.00 0.00 36.92 2.90
2255 2271 9.151471 GCATAGAAATTACTCTGAAGTTACACA 57.849 33.333 0.00 0.00 36.92 3.72
2260 2276 7.986085 AATTACTCTGAAGTTACACAATGCT 57.014 32.000 0.00 0.00 36.92 3.79
2261 2277 9.502091 AAATTACTCTGAAGTTACACAATGCTA 57.498 29.630 0.00 0.00 36.92 3.49
2262 2278 7.884816 TTACTCTGAAGTTACACAATGCTAC 57.115 36.000 0.00 0.00 36.92 3.58
2263 2279 6.102897 ACTCTGAAGTTACACAATGCTACT 57.897 37.500 0.00 0.00 28.74 2.57
2264 2280 5.928839 ACTCTGAAGTTACACAATGCTACTG 59.071 40.000 0.00 0.00 28.74 2.74
2267 2283 6.423905 TCTGAAGTTACACAATGCTACTGTTC 59.576 38.462 0.00 0.00 0.00 3.18
2274 2348 2.038952 ACAATGCTACTGTTCTGCCTCA 59.961 45.455 0.00 0.00 0.00 3.86
2278 2352 0.610174 CTACTGTTCTGCCTCAGCCA 59.390 55.000 0.00 0.00 38.69 4.75
2289 2363 3.308401 TGCCTCAGCCACTTATCATCTA 58.692 45.455 0.00 0.00 38.69 1.98
2293 2367 5.338219 GCCTCAGCCACTTATCATCTATCAT 60.338 44.000 0.00 0.00 0.00 2.45
2329 2403 8.885494 ACAATGAATTCTCTTCTGATAGCTAC 57.115 34.615 7.05 0.00 0.00 3.58
2335 2409 9.593134 GAATTCTCTTCTGATAGCTACTTTTCA 57.407 33.333 0.00 0.00 0.00 2.69
2359 2433 5.230182 TGTATATGCTAGAATTGCTGGACG 58.770 41.667 0.00 0.00 0.00 4.79
2376 2450 1.546476 GACGGGTGATGTGACTCTTCT 59.454 52.381 0.00 0.00 0.00 2.85
2379 2453 3.576982 ACGGGTGATGTGACTCTTCTAAA 59.423 43.478 0.00 0.00 0.00 1.85
2380 2454 4.039973 ACGGGTGATGTGACTCTTCTAAAA 59.960 41.667 0.00 0.00 0.00 1.52
2381 2455 4.627467 CGGGTGATGTGACTCTTCTAAAAG 59.373 45.833 0.00 0.00 0.00 2.27
2389 2463 6.291377 TGTGACTCTTCTAAAAGAACATGCT 58.709 36.000 0.00 0.00 40.95 3.79
2403 2477 6.382869 AGAACATGCTGCAATTATACTTCC 57.617 37.500 6.36 0.00 0.00 3.46
2423 2503 3.194116 TCCTTGATGCATGCTTTCCTTTC 59.806 43.478 20.33 5.13 0.00 2.62
2433 2513 6.165577 GCATGCTTTCCTTTCTTAAAATGGA 58.834 36.000 11.37 0.00 0.00 3.41
2474 2554 6.542821 TGTCTCTTGGTTATTGGTGAATCTT 58.457 36.000 0.00 0.00 0.00 2.40
2567 2649 3.906720 TCAGGGTAGGTTATTCACTGC 57.093 47.619 0.00 0.00 0.00 4.40
2600 2682 9.440773 TTCGTCTAATCTGTAACTTCAGTACTA 57.559 33.333 0.00 0.00 36.85 1.82
2601 2683 9.610705 TCGTCTAATCTGTAACTTCAGTACTAT 57.389 33.333 0.00 0.00 36.85 2.12
2638 2720 4.543590 AACAGTGTCTAGTTAGCATGCT 57.456 40.909 25.99 25.99 0.00 3.79
2677 2759 4.255510 AGTATGCACTGGAATCCCAATT 57.744 40.909 0.00 0.00 42.98 2.32
2681 2763 3.772387 TGCACTGGAATCCCAATTTACA 58.228 40.909 0.00 0.00 42.98 2.41
2858 2943 8.134895 GTGGTCTCTCTTCTCTATCAATACAAG 58.865 40.741 0.00 0.00 0.00 3.16
2880 2965 8.084073 ACAAGGCATTATATTAACATGCATGTC 58.916 33.333 31.45 14.94 44.37 3.06
2984 3070 9.956720 ATGAGAATTTTCTTGTTGTAAGTTCTG 57.043 29.630 0.00 0.00 37.73 3.02
2996 3082 6.096987 TGTTGTAAGTTCTGTCTCACTCTCTT 59.903 38.462 0.00 0.00 0.00 2.85
3054 3142 7.716799 TGGCAAGTTATTTTGACCTATGAAT 57.283 32.000 0.00 0.00 35.11 2.57
3075 3163 6.379988 TGAATCGGTGAGGCTGCTAATATATA 59.620 38.462 0.00 0.00 0.00 0.86
3178 3266 7.582667 ATTTGAGGTATTTGTATTACTGGGC 57.417 36.000 0.00 0.00 0.00 5.36
3194 3282 0.039527 GGGCGTTTTGTAGCTTGTGG 60.040 55.000 0.00 0.00 0.00 4.17
3196 3284 1.066454 GGCGTTTTGTAGCTTGTGGTT 59.934 47.619 0.00 0.00 0.00 3.67
3198 3286 2.533942 GCGTTTTGTAGCTTGTGGTTTG 59.466 45.455 0.00 0.00 0.00 2.93
3201 3289 4.490743 GTTTTGTAGCTTGTGGTTTGTGT 58.509 39.130 0.00 0.00 0.00 3.72
3361 3449 7.735326 ATATCCTTGTACTCCTGTTTAGTGT 57.265 36.000 0.00 0.00 0.00 3.55
3362 3450 5.881923 TCCTTGTACTCCTGTTTAGTGTT 57.118 39.130 0.00 0.00 0.00 3.32
3363 3451 6.243216 TCCTTGTACTCCTGTTTAGTGTTT 57.757 37.500 0.00 0.00 0.00 2.83
3364 3452 7.364149 TCCTTGTACTCCTGTTTAGTGTTTA 57.636 36.000 0.00 0.00 0.00 2.01
3455 3773 7.692908 AAAACATTTATCTTGGTTGTTCACG 57.307 32.000 0.00 0.00 30.62 4.35
3527 3845 5.590259 GCACTCCATATGTGAACAATTAGGT 59.410 40.000 1.24 0.00 37.60 3.08
3576 3894 0.794229 GATGCCACGTCAATGCGTTG 60.794 55.000 12.66 12.66 43.83 4.10
3587 3905 2.548057 TCAATGCGTTGACCTTCAGTTC 59.452 45.455 17.41 0.00 39.36 3.01
3638 3956 6.177610 GGGTGTGACTGGAAAATTATAGACA 58.822 40.000 0.00 0.00 0.00 3.41
3693 4011 5.753921 GTGCATTTGGATACTCTACTGGTAC 59.246 44.000 0.00 0.00 37.61 3.34
3806 4124 4.214545 TGGGCGTGTCAACTTTTTAGTATG 59.785 41.667 0.00 0.00 0.00 2.39
3997 4315 4.074259 TGAGAACAATGATTGGTGACAGG 58.926 43.478 10.27 0.00 44.54 4.00
4021 4339 8.813951 AGGTTATGATAAGTATACTTGGCCTAC 58.186 37.037 25.27 15.63 37.40 3.18
4036 4354 4.454678 TGGCCTACTGATCATTCATCAAC 58.545 43.478 3.32 0.00 41.25 3.18
4052 4371 3.431922 TCAACGATAAGGCTTAGTCCG 57.568 47.619 13.15 16.39 0.00 4.79
4068 4387 7.255139 GGCTTAGTCCGTTATATGAATTGCTTT 60.255 37.037 0.00 0.00 0.00 3.51
4080 4399 5.599359 TGAATTGCTTTCGTAATCGTGAA 57.401 34.783 0.00 0.00 37.13 3.18
4081 4400 5.379003 TGAATTGCTTTCGTAATCGTGAAC 58.621 37.500 0.00 0.00 37.13 3.18
4100 4419 7.390440 TCGTGAACTGAGGTTTTAAATGATGAT 59.610 33.333 0.00 0.00 35.58 2.45
4263 4583 4.781087 AGTTGTAGGCTGTATCTTGGGTAA 59.219 41.667 0.00 0.00 0.00 2.85
4264 4584 5.104900 AGTTGTAGGCTGTATCTTGGGTAAG 60.105 44.000 0.00 0.00 35.16 2.34
4265 4585 4.359105 TGTAGGCTGTATCTTGGGTAAGT 58.641 43.478 0.00 0.00 35.38 2.24
4364 4689 8.397906 TCATAAAGATGTTCTTTTAATGCGGAG 58.602 33.333 7.72 0.00 43.62 4.63
4369 4694 6.657541 AGATGTTCTTTTAATGCGGAGGTTAA 59.342 34.615 0.00 0.00 0.00 2.01
4370 4695 6.636562 TGTTCTTTTAATGCGGAGGTTAAA 57.363 33.333 0.00 0.00 0.00 1.52
4375 4700 8.117813 TCTTTTAATGCGGAGGTTAAAATTCT 57.882 30.769 8.15 0.00 38.41 2.40
4385 4710 5.920840 GGAGGTTAAAATTCTTTCACTGTGC 59.079 40.000 2.12 0.00 0.00 4.57
4387 4712 6.739112 AGGTTAAAATTCTTTCACTGTGCTC 58.261 36.000 2.12 0.00 0.00 4.26
4394 4719 3.722147 TCTTTCACTGTGCTCTGACTTC 58.278 45.455 2.12 0.00 0.00 3.01
4403 4728 2.734079 GTGCTCTGACTTCACTACTTGC 59.266 50.000 0.00 0.00 0.00 4.01
4494 4819 3.230134 CTCACTTAGGAGAGGGGATCTG 58.770 54.545 0.00 0.00 38.84 2.90
4566 4891 7.847078 CACATATTTGTGTGCTGAAAAAGTTTG 59.153 33.333 8.02 0.00 46.68 2.93
4575 4900 3.295973 CTGAAAAAGTTTGGACCCTCCA 58.704 45.455 0.00 0.00 46.61 3.86
4693 5022 6.441274 AGACACTGATTGCTTATTTGTGTTG 58.559 36.000 0.00 0.00 34.98 3.33
4694 5023 4.984161 ACACTGATTGCTTATTTGTGTTGC 59.016 37.500 0.00 0.00 32.69 4.17
4969 5299 3.245622 TGTGGATGAGGTACTTGGAGAGA 60.246 47.826 0.00 0.00 41.55 3.10
5270 5605 6.316890 ACAGGTTTATGTAAAATTACCGCGAT 59.683 34.615 8.23 0.00 32.72 4.58
5284 5619 3.531538 ACCGCGATTCTGATTGTAACAT 58.468 40.909 8.23 0.00 0.00 2.71
5343 5678 3.332485 TGGTTGGTAGCCTCCACTTAAAT 59.668 43.478 0.00 0.00 37.20 1.40
5426 5761 6.017605 CAGACTGCAATTAAGGCCATAGTAAG 60.018 42.308 5.01 0.00 0.00 2.34
5430 5765 7.396055 ACTGCAATTAAGGCCATAGTAAGAAAA 59.604 33.333 5.01 0.00 0.00 2.29
5431 5766 8.128322 TGCAATTAAGGCCATAGTAAGAAAAA 57.872 30.769 5.01 0.00 0.00 1.94
5432 5767 8.032451 TGCAATTAAGGCCATAGTAAGAAAAAC 58.968 33.333 5.01 0.00 0.00 2.43
5433 5768 8.251026 GCAATTAAGGCCATAGTAAGAAAAACT 58.749 33.333 5.01 0.00 0.00 2.66
5450 5785 8.004087 AGAAAAACTTAACTGGAAACCTAACC 57.996 34.615 0.00 0.00 0.00 2.85
5471 5806 0.033504 GTGAGGCTGTCGGTTCAGAA 59.966 55.000 0.00 0.00 37.61 3.02
5479 5814 4.378459 GGCTGTCGGTTCAGAATTTTACTG 60.378 45.833 7.21 0.00 37.61 2.74
5482 5817 5.127491 TGTCGGTTCAGAATTTTACTGGTT 58.873 37.500 0.00 0.00 36.22 3.67
5487 5822 5.535030 GGTTCAGAATTTTACTGGTTGGACT 59.465 40.000 0.00 0.00 36.22 3.85
5499 5834 2.637382 TGGTTGGACTGCTAGTTCATCA 59.363 45.455 0.00 0.00 32.87 3.07
5509 5844 6.000219 ACTGCTAGTTCATCAGTTCATTTGT 59.000 36.000 0.00 0.00 37.78 2.83
5569 5904 8.981724 ACATTTTGATCTCACATCAAATGAAG 57.018 30.769 16.31 4.65 44.45 3.02
5584 5919 6.163476 TCAAATGAAGTAGAAGCATACACGT 58.837 36.000 0.00 0.00 0.00 4.49
5651 5986 4.578871 TGTTACTGATGTGTTAGCAGCAT 58.421 39.130 0.00 0.00 46.65 3.79
5699 6034 3.649096 CGTCACGCATGTCCCAAA 58.351 55.556 0.00 0.00 0.00 3.28
5700 6035 1.497278 CGTCACGCATGTCCCAAAG 59.503 57.895 0.00 0.00 0.00 2.77
5701 6036 1.227999 CGTCACGCATGTCCCAAAGT 61.228 55.000 0.00 0.00 0.00 2.66
5702 6037 1.803334 GTCACGCATGTCCCAAAGTA 58.197 50.000 0.00 0.00 0.00 2.24
5703 6038 1.732259 GTCACGCATGTCCCAAAGTAG 59.268 52.381 0.00 0.00 0.00 2.57
5704 6039 1.346395 TCACGCATGTCCCAAAGTAGT 59.654 47.619 0.00 0.00 0.00 2.73
5705 6040 1.464608 CACGCATGTCCCAAAGTAGTG 59.535 52.381 0.00 0.00 0.00 2.74
5706 6041 1.086696 CGCATGTCCCAAAGTAGTGG 58.913 55.000 0.00 0.00 38.51 4.00
5707 6042 1.610624 CGCATGTCCCAAAGTAGTGGT 60.611 52.381 0.00 0.00 36.90 4.16
5708 6043 2.514803 GCATGTCCCAAAGTAGTGGTT 58.485 47.619 0.00 0.00 36.90 3.67
5709 6044 2.228822 GCATGTCCCAAAGTAGTGGTTG 59.771 50.000 0.00 0.00 36.90 3.77
5710 6045 2.649531 TGTCCCAAAGTAGTGGTTGG 57.350 50.000 0.00 0.00 43.37 3.77
5711 6046 1.244816 GTCCCAAAGTAGTGGTTGGC 58.755 55.000 0.00 0.00 42.56 4.52
5712 6047 0.250553 TCCCAAAGTAGTGGTTGGCG 60.251 55.000 0.00 0.00 42.56 5.69
5713 6048 0.536460 CCCAAAGTAGTGGTTGGCGT 60.536 55.000 0.00 0.00 42.56 5.68
5714 6049 0.872388 CCAAAGTAGTGGTTGGCGTC 59.128 55.000 0.00 0.00 38.04 5.19
5715 6050 1.588674 CAAAGTAGTGGTTGGCGTCA 58.411 50.000 0.00 0.00 0.00 4.35
5716 6051 1.263217 CAAAGTAGTGGTTGGCGTCAC 59.737 52.381 0.00 0.00 0.00 3.67
5717 6052 0.466543 AAGTAGTGGTTGGCGTCACA 59.533 50.000 0.00 0.00 36.43 3.58
5718 6053 0.249741 AGTAGTGGTTGGCGTCACAC 60.250 55.000 2.73 2.73 36.43 3.82
5719 6054 0.531090 GTAGTGGTTGGCGTCACACA 60.531 55.000 12.58 1.21 36.35 3.72
5720 6055 0.394938 TAGTGGTTGGCGTCACACAT 59.605 50.000 12.58 1.91 36.35 3.21
5721 6056 1.165907 AGTGGTTGGCGTCACACATG 61.166 55.000 12.58 0.00 36.35 3.21
5722 6057 1.153066 TGGTTGGCGTCACACATGT 60.153 52.632 0.00 0.00 0.00 3.21
5723 6058 0.749818 TGGTTGGCGTCACACATGTT 60.750 50.000 0.00 0.00 0.00 2.71
5814 6151 8.773645 TCAAAATTATGATATGCGTAACTGAGG 58.226 33.333 0.00 0.00 31.12 3.86
5815 6152 6.727824 AATTATGATATGCGTAACTGAGGC 57.272 37.500 0.00 0.00 39.49 4.70
5816 6153 5.468540 TTATGATATGCGTAACTGAGGCT 57.531 39.130 0.00 0.00 39.76 4.58
5817 6154 3.819564 TGATATGCGTAACTGAGGCTT 57.180 42.857 0.00 0.00 39.76 4.35
5818 6155 3.717707 TGATATGCGTAACTGAGGCTTC 58.282 45.455 0.00 0.00 39.76 3.86
5819 6156 2.203800 TATGCGTAACTGAGGCTTCG 57.796 50.000 0.00 0.00 39.76 3.79
5820 6157 1.084370 ATGCGTAACTGAGGCTTCGC 61.084 55.000 0.00 0.00 43.14 4.70
5821 6158 1.736645 GCGTAACTGAGGCTTCGCA 60.737 57.895 0.00 0.00 42.54 5.10
5822 6159 1.289109 GCGTAACTGAGGCTTCGCAA 61.289 55.000 0.00 0.00 42.54 4.85
5823 6160 1.144969 CGTAACTGAGGCTTCGCAAA 58.855 50.000 0.00 0.00 0.00 3.68
5824 6161 1.529438 CGTAACTGAGGCTTCGCAAAA 59.471 47.619 0.00 0.00 0.00 2.44
5825 6162 2.661979 CGTAACTGAGGCTTCGCAAAAC 60.662 50.000 0.00 0.00 0.00 2.43
5826 6163 1.680338 AACTGAGGCTTCGCAAAACT 58.320 45.000 0.00 0.00 0.00 2.66
5827 6164 2.543777 ACTGAGGCTTCGCAAAACTA 57.456 45.000 0.00 0.00 0.00 2.24
5828 6165 2.846193 ACTGAGGCTTCGCAAAACTAA 58.154 42.857 0.00 0.00 0.00 2.24
5829 6166 3.412386 ACTGAGGCTTCGCAAAACTAAT 58.588 40.909 0.00 0.00 0.00 1.73
5830 6167 3.821033 ACTGAGGCTTCGCAAAACTAATT 59.179 39.130 0.00 0.00 0.00 1.40
5831 6168 4.083271 ACTGAGGCTTCGCAAAACTAATTC 60.083 41.667 0.00 0.00 0.00 2.17
5832 6169 3.818210 TGAGGCTTCGCAAAACTAATTCA 59.182 39.130 0.00 0.00 0.00 2.57
5833 6170 4.277174 TGAGGCTTCGCAAAACTAATTCAA 59.723 37.500 0.00 0.00 0.00 2.69
5834 6171 5.195001 AGGCTTCGCAAAACTAATTCAAA 57.805 34.783 0.00 0.00 0.00 2.69
5835 6172 5.596845 AGGCTTCGCAAAACTAATTCAAAA 58.403 33.333 0.00 0.00 0.00 2.44
5836 6173 6.223120 AGGCTTCGCAAAACTAATTCAAAAT 58.777 32.000 0.00 0.00 0.00 1.82
5916 6255 6.483640 GCTCTAAGATTTGACCAACCGATATT 59.516 38.462 0.00 0.00 0.00 1.28
5917 6256 7.012421 GCTCTAAGATTTGACCAACCGATATTT 59.988 37.037 0.00 0.00 0.00 1.40
5918 6257 8.433421 TCTAAGATTTGACCAACCGATATTTC 57.567 34.615 0.00 0.00 0.00 2.17
5919 6258 8.044309 TCTAAGATTTGACCAACCGATATTTCA 58.956 33.333 0.00 0.00 0.00 2.69
5920 6259 7.645058 AAGATTTGACCAACCGATATTTCAT 57.355 32.000 0.00 0.00 0.00 2.57
5921 6260 8.746052 AAGATTTGACCAACCGATATTTCATA 57.254 30.769 0.00 0.00 0.00 2.15
5922 6261 8.746052 AGATTTGACCAACCGATATTTCATAA 57.254 30.769 0.00 0.00 0.00 1.90
5923 6262 8.621286 AGATTTGACCAACCGATATTTCATAAC 58.379 33.333 0.00 0.00 0.00 1.89
5924 6263 7.931578 TTTGACCAACCGATATTTCATAACT 57.068 32.000 0.00 0.00 0.00 2.24
5925 6264 7.931578 TTGACCAACCGATATTTCATAACTT 57.068 32.000 0.00 0.00 0.00 2.66
5926 6265 9.451002 TTTGACCAACCGATATTTCATAACTTA 57.549 29.630 0.00 0.00 0.00 2.24
5927 6266 8.428186 TGACCAACCGATATTTCATAACTTAC 57.572 34.615 0.00 0.00 0.00 2.34
5928 6267 7.496591 TGACCAACCGATATTTCATAACTTACC 59.503 37.037 0.00 0.00 0.00 2.85
5929 6268 7.571025 ACCAACCGATATTTCATAACTTACCT 58.429 34.615 0.00 0.00 0.00 3.08
5930 6269 8.050930 ACCAACCGATATTTCATAACTTACCTT 58.949 33.333 0.00 0.00 0.00 3.50
5931 6270 9.550406 CCAACCGATATTTCATAACTTACCTTA 57.450 33.333 0.00 0.00 0.00 2.69
5943 6282 9.444600 TCATAACTTACCTTAGATTTGACCAAC 57.555 33.333 0.00 0.00 0.00 3.77
5944 6283 8.674607 CATAACTTACCTTAGATTTGACCAACC 58.325 37.037 0.00 0.00 0.00 3.77
5945 6284 5.243207 ACTTACCTTAGATTTGACCAACCG 58.757 41.667 0.00 0.00 0.00 4.44
5946 6285 5.012354 ACTTACCTTAGATTTGACCAACCGA 59.988 40.000 0.00 0.00 0.00 4.69
5947 6286 4.569719 ACCTTAGATTTGACCAACCGAT 57.430 40.909 0.00 0.00 0.00 4.18
5948 6287 5.687166 ACCTTAGATTTGACCAACCGATA 57.313 39.130 0.00 0.00 0.00 2.92
5949 6288 6.248569 ACCTTAGATTTGACCAACCGATAT 57.751 37.500 0.00 0.00 0.00 1.63
5968 6307 8.050930 ACCGATATTTCATAACTTACCTTGGTT 58.949 33.333 0.00 0.00 0.00 3.67
6131 6471 8.388103 TGCGTAGTTAGAATCAAAATAGAAAGC 58.612 33.333 0.00 0.00 0.00 3.51
6155 6495 9.656040 AGCACATATTTGAAATAAAAGCAATGA 57.344 25.926 15.87 0.00 0.00 2.57
6178 6518 4.371855 TTGCACTGACTAACGATAGGAG 57.628 45.455 4.63 2.60 43.77 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.037121 TGAGAGTGAAGGTGCGAATCAA 59.963 45.455 0.00 0.00 0.00 2.57
107 109 2.979814 TGGGAATGATGTGTACGGAG 57.020 50.000 0.00 0.00 0.00 4.63
131 133 9.528018 CCAATATGGGTGTGTATTTTTAATGTC 57.472 33.333 0.00 0.00 32.67 3.06
145 147 5.191727 TGAATCAGTTCCAATATGGGTGT 57.808 39.130 0.00 0.00 38.32 4.16
146 148 6.071447 TGTTTGAATCAGTTCCAATATGGGTG 60.071 38.462 0.00 0.00 38.32 4.61
163 165 9.896645 AGACACTAGATGATTATGTGTTTGAAT 57.103 29.630 0.00 0.00 41.21 2.57
176 178 3.310954 ACCCCAGGAAGACACTAGATGAT 60.311 47.826 0.00 0.00 0.00 2.45
194 196 0.837272 TGATGGAGGATTTCGACCCC 59.163 55.000 0.00 0.00 0.00 4.95
277 280 7.752695 AGAATCGATTTCTGTTTATGTTCCAC 58.247 34.615 12.81 0.00 43.21 4.02
298 301 2.131023 GTCAAGGAGATGGGGGAGAAT 58.869 52.381 0.00 0.00 0.00 2.40
321 324 0.532573 GTGCCCGATGAAGAGACTGA 59.467 55.000 0.00 0.00 0.00 3.41
369 372 2.274104 GGCCGGGGTATGCAGAAA 59.726 61.111 2.18 0.00 0.00 2.52
418 421 0.892358 CGGCGCAGGAGGGTAGTATA 60.892 60.000 10.83 0.00 0.00 1.47
420 423 2.831742 CGGCGCAGGAGGGTAGTA 60.832 66.667 10.83 0.00 0.00 1.82
438 441 4.676951 TGGGCTGGAAAAGGGCGG 62.677 66.667 0.00 0.00 0.00 6.13
445 448 0.110486 GAGTCAAGGTGGGCTGGAAA 59.890 55.000 0.00 0.00 0.00 3.13
481 484 7.040132 GGAATGTTGAAGAAGATGAACCTTTCT 60.040 37.037 0.00 0.00 0.00 2.52
484 487 6.310149 AGGAATGTTGAAGAAGATGAACCTT 58.690 36.000 0.00 0.00 0.00 3.50
534 538 2.347490 GCACGGGAGCTTGGAGAA 59.653 61.111 0.00 0.00 0.00 2.87
535 539 4.069232 CGCACGGGAGCTTGGAGA 62.069 66.667 0.00 0.00 0.00 3.71
557 561 5.478332 CCTAGCATTTTTCCTTTGTTCTCCT 59.522 40.000 0.00 0.00 0.00 3.69
564 568 5.876460 CCAAATCCCTAGCATTTTTCCTTTG 59.124 40.000 0.00 0.00 0.00 2.77
565 569 5.547666 ACCAAATCCCTAGCATTTTTCCTTT 59.452 36.000 0.00 0.00 0.00 3.11
567 571 4.467438 CACCAAATCCCTAGCATTTTTCCT 59.533 41.667 0.00 0.00 0.00 3.36
568 572 4.383010 CCACCAAATCCCTAGCATTTTTCC 60.383 45.833 0.00 0.00 0.00 3.13
569 573 4.383010 CCCACCAAATCCCTAGCATTTTTC 60.383 45.833 0.00 0.00 0.00 2.29
575 580 0.331278 CACCCACCAAATCCCTAGCA 59.669 55.000 0.00 0.00 0.00 3.49
639 644 1.674057 CGCATAGATCCCCTCCCAC 59.326 63.158 0.00 0.00 0.00 4.61
644 649 0.896019 CTCGTCCGCATAGATCCCCT 60.896 60.000 0.00 0.00 0.00 4.79
645 650 0.894184 TCTCGTCCGCATAGATCCCC 60.894 60.000 0.00 0.00 0.00 4.81
735 740 2.364961 CCTCCTCGTCCCCCTCTT 59.635 66.667 0.00 0.00 0.00 2.85
736 741 4.467107 GCCTCCTCGTCCCCCTCT 62.467 72.222 0.00 0.00 0.00 3.69
771 776 3.488553 GGTCTCTTTCTCTAGCGCTTCTC 60.489 52.174 18.68 0.00 0.00 2.87
780 785 4.291513 TGTGAGGGTAGGTCTCTTTCTCTA 59.708 45.833 0.00 0.00 32.78 2.43
784 789 2.897969 TGTGTGAGGGTAGGTCTCTTTC 59.102 50.000 0.00 0.00 32.78 2.62
786 791 2.249139 GTGTGTGAGGGTAGGTCTCTT 58.751 52.381 0.00 0.00 32.78 2.85
787 792 1.887088 CGTGTGTGAGGGTAGGTCTCT 60.887 57.143 0.00 0.00 32.78 3.10
788 793 0.526662 CGTGTGTGAGGGTAGGTCTC 59.473 60.000 0.00 0.00 0.00 3.36
789 794 0.898789 CCGTGTGTGAGGGTAGGTCT 60.899 60.000 0.00 0.00 0.00 3.85
790 795 1.590147 CCGTGTGTGAGGGTAGGTC 59.410 63.158 0.00 0.00 0.00 3.85
791 796 1.911766 CCCGTGTGTGAGGGTAGGT 60.912 63.158 0.00 0.00 42.67 3.08
798 803 2.049433 GTCCGTCCCGTGTGTGAG 60.049 66.667 0.00 0.00 0.00 3.51
816 821 5.687285 GCAAGGTAAAACAACTTGATCACAG 59.313 40.000 6.24 0.00 43.13 3.66
817 822 5.451242 GGCAAGGTAAAACAACTTGATCACA 60.451 40.000 6.24 0.00 43.13 3.58
818 823 4.982295 GGCAAGGTAAAACAACTTGATCAC 59.018 41.667 6.24 0.00 43.13 3.06
819 824 4.646945 TGGCAAGGTAAAACAACTTGATCA 59.353 37.500 6.24 0.00 43.13 2.92
820 825 5.009610 TCTGGCAAGGTAAAACAACTTGATC 59.990 40.000 6.24 0.00 43.13 2.92
821 826 4.892934 TCTGGCAAGGTAAAACAACTTGAT 59.107 37.500 6.24 0.00 43.13 2.57
822 827 4.274147 TCTGGCAAGGTAAAACAACTTGA 58.726 39.130 6.24 0.00 43.13 3.02
823 828 4.647424 TCTGGCAAGGTAAAACAACTTG 57.353 40.909 0.00 0.00 43.28 3.16
824 829 5.476945 CCTATCTGGCAAGGTAAAACAACTT 59.523 40.000 0.00 0.00 0.00 2.66
842 847 3.227276 CCGTCTGCGCCCCTATCT 61.227 66.667 4.18 0.00 36.67 1.98
853 858 1.579964 TTGCTCATTGCTGCCGTCTG 61.580 55.000 0.00 0.00 43.37 3.51
857 862 1.444895 GGTTTGCTCATTGCTGCCG 60.445 57.895 0.00 0.00 43.37 5.69
927 932 2.579657 AATCCACGCCGTCCAGTGA 61.580 57.895 0.00 0.00 40.56 3.41
940 945 1.153449 GGTGACGATCGCCAATCCA 60.153 57.895 16.60 1.00 46.03 3.41
960 965 3.694566 GGGTAGTTCTGGTTTATGCAAGG 59.305 47.826 0.00 0.00 0.00 3.61
1144 1157 1.134491 TCGGACTGAGAGATAGCGTCA 60.134 52.381 0.00 0.00 0.00 4.35
1186 1199 4.959596 GCCGAGGAGATGGCGAGC 62.960 72.222 0.00 0.00 42.22 5.03
1306 1319 2.125512 GAGTGAATGGCGCGGAGT 60.126 61.111 8.83 0.00 0.00 3.85
1318 1331 2.037367 CGGAGGGAGTGGGAGTGA 59.963 66.667 0.00 0.00 0.00 3.41
1441 1454 3.387374 ACCAAAAGCACATCAAATCCACA 59.613 39.130 0.00 0.00 0.00 4.17
1443 1456 4.378774 CAACCAAAAGCACATCAAATCCA 58.621 39.130 0.00 0.00 0.00 3.41
1456 1469 1.539776 GAACGCGCTGCAACCAAAAG 61.540 55.000 5.73 0.00 0.00 2.27
1458 1471 2.025441 GAACGCGCTGCAACCAAA 59.975 55.556 5.73 0.00 0.00 3.28
1488 1501 1.650528 CAAGGAGTCTCCCAGTTCCT 58.349 55.000 15.72 0.00 41.73 3.36
1572 1585 1.038681 AACCCAAACCAACCGACCAC 61.039 55.000 0.00 0.00 0.00 4.16
1577 1590 3.188492 GTTTACAAACCCAAACCAACCG 58.812 45.455 0.00 0.00 32.82 4.44
1628 1641 4.471904 TCTGCCTACACCAAGACAATAG 57.528 45.455 0.00 0.00 0.00 1.73
1650 1663 1.406898 CCGCTCATCACAAGCTCTCTA 59.593 52.381 0.00 0.00 37.62 2.43
1653 1666 1.220206 CCCGCTCATCACAAGCTCT 59.780 57.895 0.00 0.00 37.62 4.09
1716 1729 2.551912 CGCAAGTGCCCCGAAAACT 61.552 57.895 0.00 0.00 37.91 2.66
1722 1735 3.202001 CATACCGCAAGTGCCCCG 61.202 66.667 0.00 0.00 37.91 5.73
1758 1771 2.559668 ACCATTCAAGAATGCACACCAG 59.440 45.455 15.56 4.82 45.06 4.00
1761 1774 7.761409 TCTTATTACCATTCAAGAATGCACAC 58.239 34.615 15.56 0.00 45.06 3.82
1774 1787 9.686683 AGACACTTGCTAATTCTTATTACCATT 57.313 29.630 0.00 0.00 0.00 3.16
1782 1795 7.320399 TCGAATCAGACACTTGCTAATTCTTA 58.680 34.615 0.00 0.00 0.00 2.10
1788 1801 5.931724 TCAATTCGAATCAGACACTTGCTAA 59.068 36.000 11.83 0.00 0.00 3.09
1796 1809 5.687770 TTTTGCTCAATTCGAATCAGACA 57.312 34.783 11.83 9.75 0.00 3.41
1816 1829 8.840321 TCTTTCAATTCGAATCAGACTCTTTTT 58.160 29.630 11.83 0.00 32.32 1.94
1817 1830 8.383318 TCTTTCAATTCGAATCAGACTCTTTT 57.617 30.769 11.83 0.00 32.32 2.27
1818 1831 7.969536 TCTTTCAATTCGAATCAGACTCTTT 57.030 32.000 11.83 0.00 32.32 2.52
1819 1832 7.969536 TTCTTTCAATTCGAATCAGACTCTT 57.030 32.000 11.83 0.00 32.32 2.85
1820 1833 7.969536 TTTCTTTCAATTCGAATCAGACTCT 57.030 32.000 11.83 0.00 32.32 3.24
1821 1834 9.059485 CAATTTCTTTCAATTCGAATCAGACTC 57.941 33.333 11.83 0.00 32.32 3.36
1822 1835 7.540055 GCAATTTCTTTCAATTCGAATCAGACT 59.460 33.333 11.83 0.00 32.32 3.24
1823 1836 7.540055 AGCAATTTCTTTCAATTCGAATCAGAC 59.460 33.333 11.83 0.01 32.32 3.51
1824 1837 7.596494 AGCAATTTCTTTCAATTCGAATCAGA 58.404 30.769 11.83 9.95 32.32 3.27
1825 1838 7.807687 AGCAATTTCTTTCAATTCGAATCAG 57.192 32.000 11.83 7.63 32.32 2.90
1826 1839 7.652909 ACAAGCAATTTCTTTCAATTCGAATCA 59.347 29.630 11.83 0.00 32.32 2.57
1827 1840 7.948363 CACAAGCAATTTCTTTCAATTCGAATC 59.052 33.333 11.83 0.00 32.32 2.52
1828 1841 7.652909 TCACAAGCAATTTCTTTCAATTCGAAT 59.347 29.630 4.39 4.39 32.32 3.34
1829 1842 6.977502 TCACAAGCAATTTCTTTCAATTCGAA 59.022 30.769 0.00 0.00 0.00 3.71
1840 1853 4.280174 ACAAGCTCATCACAAGCAATTTCT 59.720 37.500 0.00 0.00 42.35 2.52
1883 1896 4.202010 TGTTCACTTTTTGCTAAGCACCTC 60.202 41.667 0.00 0.00 38.71 3.85
1899 1912 5.192927 TGTGACAAGGAGAAAATGTTCACT 58.807 37.500 0.00 0.00 36.09 3.41
1900 1913 5.499139 TGTGACAAGGAGAAAATGTTCAC 57.501 39.130 0.00 0.00 36.09 3.18
1901 1914 6.405731 CCTTTGTGACAAGGAGAAAATGTTCA 60.406 38.462 9.16 0.00 38.45 3.18
1902 1915 5.979517 CCTTTGTGACAAGGAGAAAATGTTC 59.020 40.000 9.16 0.00 38.45 3.18
1903 1916 5.163416 CCCTTTGTGACAAGGAGAAAATGTT 60.163 40.000 9.16 0.00 38.45 2.71
1904 1917 4.342092 CCCTTTGTGACAAGGAGAAAATGT 59.658 41.667 9.16 0.00 38.45 2.71
1911 1924 1.202806 TCTGCCCTTTGTGACAAGGAG 60.203 52.381 9.16 3.76 38.45 3.69
1995 2008 5.063880 ACCGACAAGAGCCAATTATATTCC 58.936 41.667 0.00 0.00 0.00 3.01
2025 2038 4.433615 ACGTAGGTGCTTAGATGATTGTG 58.566 43.478 0.00 0.00 0.00 3.33
2028 2041 5.241949 CCTCTACGTAGGTGCTTAGATGATT 59.758 44.000 22.01 0.00 31.46 2.57
2030 2043 4.135306 CCTCTACGTAGGTGCTTAGATGA 58.865 47.826 22.01 0.00 31.46 2.92
2055 2068 4.256920 AGCTACAACTACTCCAATGCAAG 58.743 43.478 0.00 0.00 0.00 4.01
2071 2084 7.283580 ACAACATTAAACACCAAGTAAGCTACA 59.716 33.333 0.00 0.00 0.00 2.74
2072 2085 7.589954 CACAACATTAAACACCAAGTAAGCTAC 59.410 37.037 0.00 0.00 0.00 3.58
2133 2146 1.741706 AGCATGTGCAGTACAGAATGC 59.258 47.619 7.83 7.43 44.49 3.56
2151 2164 2.189784 GCCGTCTCCCCCTTAAGC 59.810 66.667 0.00 0.00 0.00 3.09
2153 2166 0.266753 ATAGGCCGTCTCCCCCTTAA 59.733 55.000 0.00 0.00 0.00 1.85
2154 2167 0.471211 CATAGGCCGTCTCCCCCTTA 60.471 60.000 0.00 0.00 0.00 2.69
2155 2168 1.766461 CATAGGCCGTCTCCCCCTT 60.766 63.158 0.00 0.00 0.00 3.95
2156 2169 2.122813 CATAGGCCGTCTCCCCCT 60.123 66.667 0.00 0.00 0.00 4.79
2157 2170 2.070650 AACATAGGCCGTCTCCCCC 61.071 63.158 0.00 0.00 0.00 5.40
2158 2171 1.146263 CAACATAGGCCGTCTCCCC 59.854 63.158 0.00 0.00 0.00 4.81
2181 2197 4.767578 AAATGCATCAGCTTCTCCTCTA 57.232 40.909 0.00 0.00 42.74 2.43
2238 2254 7.598869 CAGTAGCATTGTGTAACTTCAGAGTAA 59.401 37.037 0.00 0.00 38.04 2.24
2240 2256 5.928839 CAGTAGCATTGTGTAACTTCAGAGT 59.071 40.000 0.00 0.00 38.04 3.24
2253 2269 2.038952 TGAGGCAGAACAGTAGCATTGT 59.961 45.455 0.00 0.00 0.00 2.71
2254 2270 2.676839 CTGAGGCAGAACAGTAGCATTG 59.323 50.000 0.00 0.00 32.44 2.82
2255 2271 2.938756 GCTGAGGCAGAACAGTAGCATT 60.939 50.000 0.00 0.00 38.54 3.56
2256 2272 1.406614 GCTGAGGCAGAACAGTAGCAT 60.407 52.381 0.00 0.00 38.54 3.79
2260 2276 0.321671 GTGGCTGAGGCAGAACAGTA 59.678 55.000 9.68 0.00 39.19 2.74
2261 2277 1.072159 GTGGCTGAGGCAGAACAGT 59.928 57.895 9.68 0.00 39.19 3.55
2262 2278 0.250640 AAGTGGCTGAGGCAGAACAG 60.251 55.000 9.68 0.00 39.19 3.16
2263 2279 1.055849 TAAGTGGCTGAGGCAGAACA 58.944 50.000 9.68 0.00 39.19 3.18
2264 2280 2.284190 GATAAGTGGCTGAGGCAGAAC 58.716 52.381 9.68 0.00 39.19 3.01
2267 2283 2.104451 AGATGATAAGTGGCTGAGGCAG 59.896 50.000 9.68 0.00 39.19 4.85
2300 2374 9.486497 GCTATCAGAAGAGAATTCATTGTATGA 57.514 33.333 8.44 5.14 37.55 2.15
2329 2403 9.608617 CAGCAATTCTAGCATATACATGAAAAG 57.391 33.333 0.00 0.00 33.67 2.27
2335 2409 5.871524 CGTCCAGCAATTCTAGCATATACAT 59.128 40.000 0.00 0.00 0.00 2.29
2353 2427 0.108615 GAGTCACATCACCCGTCCAG 60.109 60.000 0.00 0.00 0.00 3.86
2359 2433 5.794894 TCTTTTAGAAGAGTCACATCACCC 58.205 41.667 0.00 0.00 36.99 4.61
2376 2450 9.787532 GAAGTATAATTGCAGCATGTTCTTTTA 57.212 29.630 0.00 0.00 39.31 1.52
2379 2453 6.604795 AGGAAGTATAATTGCAGCATGTTCTT 59.395 34.615 7.19 0.00 39.31 2.52
2380 2454 6.125029 AGGAAGTATAATTGCAGCATGTTCT 58.875 36.000 7.19 0.00 39.31 3.01
2381 2455 6.382869 AGGAAGTATAATTGCAGCATGTTC 57.617 37.500 7.19 0.00 39.31 3.18
2389 2463 6.736519 GCATGCATCAAGGAAGTATAATTGCA 60.737 38.462 14.21 1.86 41.25 4.08
2403 2477 4.451629 AGAAAGGAAAGCATGCATCAAG 57.548 40.909 21.98 0.00 0.00 3.02
2452 2532 6.778821 TGAAGATTCACCAATAACCAAGAGA 58.221 36.000 0.00 0.00 31.01 3.10
2567 2649 9.530129 GAAGTTACAGATTAGACGAAAACATTG 57.470 33.333 0.00 0.00 0.00 2.82
2617 2699 4.543590 AGCATGCTAACTAGACACTGTT 57.456 40.909 21.21 0.00 0.00 3.16
2654 2736 5.589367 ATTGGGATTCCAGTGCATACTAT 57.411 39.130 4.80 0.00 45.04 2.12
2677 2759 9.674068 TGTTAGCCTGTTGTATAAATCATGTAA 57.326 29.630 0.00 0.00 0.00 2.41
2681 2763 8.677300 CAAGTGTTAGCCTGTTGTATAAATCAT 58.323 33.333 0.00 0.00 0.00 2.45
2858 2943 6.841119 TCGACATGCATGTTAATATAATGCC 58.159 36.000 31.82 14.10 44.86 4.40
2984 3070 4.047822 CACACACAAGAAGAGAGTGAGAC 58.952 47.826 0.00 0.00 37.05 3.36
3054 3142 6.791867 AATATATATTAGCAGCCTCACCGA 57.208 37.500 6.16 0.00 0.00 4.69
3087 3175 4.290711 TCTGATCAGCCTGATTCAAACA 57.709 40.909 18.36 0.84 37.20 2.83
3178 3266 3.545873 CACAAACCACAAGCTACAAAACG 59.454 43.478 0.00 0.00 0.00 3.60
3201 3289 5.686753 AGTAGTTCCAACAAATGTGTACCA 58.313 37.500 0.00 0.00 36.80 3.25
3260 3348 5.755409 TTGACAGCTTTACAGGGATTAGA 57.245 39.130 0.00 0.00 0.00 2.10
3317 3405 9.499369 AGGATATATACCTCAAGCAGATTGTAT 57.501 33.333 0.00 0.00 40.05 2.29
3358 3446 9.708222 CACAATCTGCTTCATATTAGTAAACAC 57.292 33.333 0.00 0.00 0.00 3.32
3359 3447 9.665719 TCACAATCTGCTTCATATTAGTAAACA 57.334 29.630 0.00 0.00 0.00 2.83
3364 3452 8.133627 GCATTTCACAATCTGCTTCATATTAGT 58.866 33.333 0.00 0.00 0.00 2.24
3370 3458 4.794278 TGCATTTCACAATCTGCTTCAT 57.206 36.364 0.00 0.00 35.66 2.57
3504 3822 7.630242 AACCTAATTGTTCACATATGGAGTG 57.370 36.000 7.80 0.00 38.32 3.51
3576 3894 3.733337 TGCTTCTTGAGAACTGAAGGTC 58.267 45.455 0.00 0.00 38.03 3.85
3587 3905 8.715191 AATGTTAGTAGATCTTGCTTCTTGAG 57.285 34.615 0.00 0.00 0.00 3.02
3638 3956 4.589908 CTGCTACAGTATTCCCCTTTGTT 58.410 43.478 0.00 0.00 0.00 2.83
3728 4046 8.710239 TGGTAAGTTAAACATAGGATGCTCATA 58.290 33.333 0.00 0.00 0.00 2.15
3733 4051 8.903820 AGAATTGGTAAGTTAAACATAGGATGC 58.096 33.333 0.00 0.00 0.00 3.91
3831 4149 7.928873 TCCCAACCTTTTGTCTTATCTAATCT 58.071 34.615 0.00 0.00 0.00 2.40
3997 4315 9.640963 CAGTAGGCCAAGTATACTTATCATAAC 57.359 37.037 17.62 11.52 34.28 1.89
4021 4339 5.699915 AGCCTTATCGTTGATGAATGATCAG 59.300 40.000 2.64 2.47 42.24 2.90
4036 4354 6.849502 TCATATAACGGACTAAGCCTTATCG 58.150 40.000 0.00 0.00 0.00 2.92
4052 4371 9.092322 CACGATTACGAAAGCAATTCATATAAC 57.908 33.333 0.00 0.00 42.66 1.89
4068 4387 3.928727 AACCTCAGTTCACGATTACGA 57.071 42.857 0.00 0.00 42.66 3.43
4080 4399 7.671398 AGGTTGATCATCATTTAAAACCTCAGT 59.329 33.333 0.00 0.00 41.53 3.41
4081 4400 8.059798 AGGTTGATCATCATTTAAAACCTCAG 57.940 34.615 0.00 0.00 41.53 3.35
4100 4419 3.214328 GGCTTGTTTTCTCAGAGGTTGA 58.786 45.455 0.00 0.00 0.00 3.18
4292 4612 5.571741 CAGCAGCATATTTCACAAAAGTGAG 59.428 40.000 0.00 0.00 34.56 3.51
4293 4613 5.463286 CAGCAGCATATTTCACAAAAGTGA 58.537 37.500 0.00 0.00 0.00 3.41
4294 4614 4.090930 GCAGCAGCATATTTCACAAAAGTG 59.909 41.667 0.00 0.00 41.58 3.16
4310 4635 6.420008 CAGAATAAATAATTCAAGGCAGCAGC 59.580 38.462 0.00 0.00 45.58 5.25
4314 4639 9.859427 TGAAACAGAATAAATAATTCAAGGCAG 57.141 29.630 1.01 0.00 45.58 4.85
4360 4685 6.142817 CACAGTGAAAGAATTTTAACCTCCG 58.857 40.000 0.00 0.00 39.27 4.63
4364 4689 6.638468 CAGAGCACAGTGAAAGAATTTTAACC 59.362 38.462 4.15 0.00 39.27 2.85
4369 4694 5.128919 AGTCAGAGCACAGTGAAAGAATTT 58.871 37.500 4.15 0.00 43.98 1.82
4370 4695 4.712476 AGTCAGAGCACAGTGAAAGAATT 58.288 39.130 4.15 0.00 0.00 2.17
4375 4700 3.118629 AGTGAAGTCAGAGCACAGTGAAA 60.119 43.478 4.15 0.00 35.08 2.69
4385 4710 4.511617 TCTGCAAGTAGTGAAGTCAGAG 57.488 45.455 0.00 0.00 33.98 3.35
4387 4712 5.121454 GGAAATCTGCAAGTAGTGAAGTCAG 59.879 44.000 0.00 0.00 33.98 3.51
4394 4719 2.699954 ACGGGAAATCTGCAAGTAGTG 58.300 47.619 0.00 0.00 33.76 2.74
4403 4728 5.637006 TCAAAATGGTTACGGGAAATCTG 57.363 39.130 0.00 0.00 0.00 2.90
4566 4891 4.392940 CAATCAATGATAGTGGAGGGTCC 58.607 47.826 0.00 0.00 36.96 4.46
4600 4928 2.847327 AGCAATCGATGTCCCCATAG 57.153 50.000 0.00 0.00 0.00 2.23
4669 4998 6.441274 CAACACAAATAAGCAATCAGTGTCT 58.559 36.000 0.00 0.00 35.58 3.41
4693 5022 5.240844 AGACACCACATTTTAGTAACCTTGC 59.759 40.000 0.00 0.00 0.00 4.01
4694 5023 6.877611 AGACACCACATTTTAGTAACCTTG 57.122 37.500 0.00 0.00 0.00 3.61
5142 5477 1.477923 CCGTTCAACTTTGGGAAGGGA 60.478 52.381 7.19 0.00 46.69 4.20
5229 5564 3.797039 ACCTGTCATGTTCCATACATCG 58.203 45.455 0.00 0.00 45.71 3.84
5236 5571 7.825331 TTTTACATAAACCTGTCATGTTCCA 57.175 32.000 0.00 0.00 34.78 3.53
5284 5619 7.395190 AACATTGCAGCTAGAATACAAATGA 57.605 32.000 0.00 0.00 0.00 2.57
5343 5678 6.657541 CCTCACTTAAGCTATAAAAACCACCA 59.342 38.462 1.29 0.00 0.00 4.17
5361 5696 8.768397 TCCAGAATACAATATTGTACCTCACTT 58.232 33.333 26.55 17.12 45.47 3.16
5426 5761 6.914215 CGGTTAGGTTTCCAGTTAAGTTTTTC 59.086 38.462 0.00 0.00 0.00 2.29
5430 5765 4.392047 CCGGTTAGGTTTCCAGTTAAGTT 58.608 43.478 0.00 0.00 34.51 2.66
5431 5766 4.011966 CCGGTTAGGTTTCCAGTTAAGT 57.988 45.455 0.00 0.00 34.51 2.24
5450 5785 2.432628 GAACCGACAGCCTCACCG 60.433 66.667 0.00 0.00 0.00 4.94
5471 5806 5.242795 ACTAGCAGTCCAACCAGTAAAAT 57.757 39.130 0.00 0.00 0.00 1.82
5479 5814 3.265791 CTGATGAACTAGCAGTCCAACC 58.734 50.000 0.00 0.00 38.01 3.77
5487 5822 5.997129 TCACAAATGAACTGATGAACTAGCA 59.003 36.000 0.00 0.00 0.00 3.49
5553 5888 6.466812 TGCTTCTACTTCATTTGATGTGAGA 58.533 36.000 8.82 5.87 34.74 3.27
5569 5904 2.295253 AGGCACGTGTATGCTTCTAC 57.705 50.000 18.38 0.00 45.38 2.59
5622 5957 8.165239 TGCTAACACATCAGTAACAAAGAAAT 57.835 30.769 0.00 0.00 0.00 2.17
5623 5958 7.561021 TGCTAACACATCAGTAACAAAGAAA 57.439 32.000 0.00 0.00 0.00 2.52
5624 5959 6.293407 GCTGCTAACACATCAGTAACAAAGAA 60.293 38.462 0.00 0.00 0.00 2.52
5625 5960 5.179368 GCTGCTAACACATCAGTAACAAAGA 59.821 40.000 0.00 0.00 0.00 2.52
5626 5961 5.049474 TGCTGCTAACACATCAGTAACAAAG 60.049 40.000 0.00 0.00 0.00 2.77
5651 5986 7.151308 CACTACTTTGGATATGTTTTTGGCAA 58.849 34.615 0.00 0.00 0.00 4.52
5695 6030 0.872388 GACGCCAACCACTACTTTGG 59.128 55.000 0.00 0.00 44.54 3.28
5696 6031 1.263217 GTGACGCCAACCACTACTTTG 59.737 52.381 0.00 0.00 0.00 2.77
5697 6032 1.134340 TGTGACGCCAACCACTACTTT 60.134 47.619 0.00 0.00 34.57 2.66
5698 6033 0.466543 TGTGACGCCAACCACTACTT 59.533 50.000 0.00 0.00 34.57 2.24
5699 6034 0.249741 GTGTGACGCCAACCACTACT 60.250 55.000 0.00 0.00 34.57 2.57
5700 6035 0.531090 TGTGTGACGCCAACCACTAC 60.531 55.000 0.00 0.00 34.57 2.73
5701 6036 0.394938 ATGTGTGACGCCAACCACTA 59.605 50.000 0.00 0.00 34.57 2.74
5702 6037 1.148273 ATGTGTGACGCCAACCACT 59.852 52.632 0.00 0.00 34.57 4.00
5703 6038 1.282570 CATGTGTGACGCCAACCAC 59.717 57.895 0.00 0.00 0.00 4.16
5704 6039 0.749818 AACATGTGTGACGCCAACCA 60.750 50.000 0.00 0.00 0.00 3.67
5705 6040 0.040425 GAACATGTGTGACGCCAACC 60.040 55.000 0.00 0.00 0.00 3.77
5706 6041 0.040425 GGAACATGTGTGACGCCAAC 60.040 55.000 0.00 0.00 0.00 3.77
5707 6042 1.502990 CGGAACATGTGTGACGCCAA 61.503 55.000 0.00 0.00 0.00 4.52
5708 6043 1.958715 CGGAACATGTGTGACGCCA 60.959 57.895 0.00 0.00 0.00 5.69
5709 6044 2.677003 CCGGAACATGTGTGACGCC 61.677 63.158 0.00 0.00 0.00 5.68
5710 6045 1.666553 TCCGGAACATGTGTGACGC 60.667 57.895 0.00 0.00 0.00 5.19
5711 6046 1.289109 GGTCCGGAACATGTGTGACG 61.289 60.000 16.61 1.80 0.00 4.35
5712 6047 0.034896 AGGTCCGGAACATGTGTGAC 59.965 55.000 24.28 4.01 0.00 3.67
5713 6048 0.034756 CAGGTCCGGAACATGTGTGA 59.965 55.000 24.28 0.00 34.96 3.58
5714 6049 1.577328 GCAGGTCCGGAACATGTGTG 61.577 60.000 24.28 12.06 41.70 3.82
5715 6050 1.302511 GCAGGTCCGGAACATGTGT 60.303 57.895 24.28 0.00 41.70 3.72
5716 6051 0.677731 ATGCAGGTCCGGAACATGTG 60.678 55.000 24.28 12.89 41.70 3.21
5717 6052 0.677731 CATGCAGGTCCGGAACATGT 60.678 55.000 24.28 0.00 41.70 3.21
5718 6053 1.378882 CCATGCAGGTCCGGAACATG 61.379 60.000 24.28 22.86 42.56 3.21
5719 6054 1.077501 CCATGCAGGTCCGGAACAT 60.078 57.895 24.28 13.15 0.00 2.71
5720 6055 2.350895 CCATGCAGGTCCGGAACA 59.649 61.111 24.28 11.25 0.00 3.18
5794 6131 5.468540 AGCCTCAGTTACGCATATCATAA 57.531 39.130 0.00 0.00 0.00 1.90
5795 6132 5.468540 AAGCCTCAGTTACGCATATCATA 57.531 39.130 0.00 0.00 0.00 2.15
5796 6133 4.310769 GAAGCCTCAGTTACGCATATCAT 58.689 43.478 0.00 0.00 0.00 2.45
5797 6134 3.717707 GAAGCCTCAGTTACGCATATCA 58.282 45.455 0.00 0.00 0.00 2.15
5798 6135 2.726760 CGAAGCCTCAGTTACGCATATC 59.273 50.000 0.00 0.00 0.00 1.63
5799 6136 2.743938 CGAAGCCTCAGTTACGCATAT 58.256 47.619 0.00 0.00 0.00 1.78
5800 6137 2.203800 CGAAGCCTCAGTTACGCATA 57.796 50.000 0.00 0.00 0.00 3.14
5801 6138 3.050703 CGAAGCCTCAGTTACGCAT 57.949 52.632 0.00 0.00 0.00 4.73
5802 6139 4.571250 CGAAGCCTCAGTTACGCA 57.429 55.556 0.00 0.00 0.00 5.24
5830 6167 8.773645 CCTCAGTTACGCATATCATAATTTTGA 58.226 33.333 0.87 0.87 0.00 2.69
5831 6168 7.535258 GCCTCAGTTACGCATATCATAATTTTG 59.465 37.037 0.00 0.00 0.00 2.44
5832 6169 7.445402 AGCCTCAGTTACGCATATCATAATTTT 59.555 33.333 0.00 0.00 0.00 1.82
5833 6170 6.936900 AGCCTCAGTTACGCATATCATAATTT 59.063 34.615 0.00 0.00 0.00 1.82
5834 6171 6.467677 AGCCTCAGTTACGCATATCATAATT 58.532 36.000 0.00 0.00 0.00 1.40
5835 6172 6.042638 AGCCTCAGTTACGCATATCATAAT 57.957 37.500 0.00 0.00 0.00 1.28
5836 6173 5.468540 AGCCTCAGTTACGCATATCATAA 57.531 39.130 0.00 0.00 0.00 1.90
5917 6256 9.444600 GTTGGTCAAATCTAAGGTAAGTTATGA 57.555 33.333 0.00 0.00 0.00 2.15
5918 6257 8.674607 GGTTGGTCAAATCTAAGGTAAGTTATG 58.325 37.037 0.00 0.00 0.00 1.90
5919 6258 7.551617 CGGTTGGTCAAATCTAAGGTAAGTTAT 59.448 37.037 0.00 0.00 0.00 1.89
5920 6259 6.875195 CGGTTGGTCAAATCTAAGGTAAGTTA 59.125 38.462 0.00 0.00 0.00 2.24
5921 6260 5.704053 CGGTTGGTCAAATCTAAGGTAAGTT 59.296 40.000 0.00 0.00 0.00 2.66
5922 6261 5.012354 TCGGTTGGTCAAATCTAAGGTAAGT 59.988 40.000 0.00 0.00 0.00 2.24
5923 6262 5.484715 TCGGTTGGTCAAATCTAAGGTAAG 58.515 41.667 0.00 0.00 0.00 2.34
5924 6263 5.486735 TCGGTTGGTCAAATCTAAGGTAA 57.513 39.130 0.00 0.00 0.00 2.85
5925 6264 5.687166 ATCGGTTGGTCAAATCTAAGGTA 57.313 39.130 0.00 0.00 0.00 3.08
5926 6265 4.569719 ATCGGTTGGTCAAATCTAAGGT 57.430 40.909 0.00 0.00 0.00 3.50
5927 6266 7.282224 TGAAATATCGGTTGGTCAAATCTAAGG 59.718 37.037 0.00 0.00 0.00 2.69
5928 6267 8.208718 TGAAATATCGGTTGGTCAAATCTAAG 57.791 34.615 0.00 0.00 0.00 2.18
5929 6268 8.746052 ATGAAATATCGGTTGGTCAAATCTAA 57.254 30.769 0.00 0.00 0.00 2.10
5930 6269 9.839817 TTATGAAATATCGGTTGGTCAAATCTA 57.160 29.630 0.00 0.00 0.00 1.98
5931 6270 8.621286 GTTATGAAATATCGGTTGGTCAAATCT 58.379 33.333 0.00 0.00 0.00 2.40
5932 6271 8.621286 AGTTATGAAATATCGGTTGGTCAAATC 58.379 33.333 0.00 0.00 0.00 2.17
5933 6272 8.519799 AGTTATGAAATATCGGTTGGTCAAAT 57.480 30.769 0.00 0.00 0.00 2.32
5934 6273 7.931578 AGTTATGAAATATCGGTTGGTCAAA 57.068 32.000 0.00 0.00 0.00 2.69
5935 6274 7.931578 AAGTTATGAAATATCGGTTGGTCAA 57.068 32.000 0.00 0.00 0.00 3.18
5936 6275 7.496591 GGTAAGTTATGAAATATCGGTTGGTCA 59.503 37.037 0.00 0.00 0.00 4.02
5937 6276 7.713942 AGGTAAGTTATGAAATATCGGTTGGTC 59.286 37.037 0.00 0.00 0.00 4.02
5938 6277 7.571025 AGGTAAGTTATGAAATATCGGTTGGT 58.429 34.615 0.00 0.00 0.00 3.67
5939 6278 8.342634 CAAGGTAAGTTATGAAATATCGGTTGG 58.657 37.037 0.00 0.00 0.00 3.77
5940 6279 8.342634 CCAAGGTAAGTTATGAAATATCGGTTG 58.657 37.037 0.00 0.00 0.00 3.77
5941 6280 8.050930 ACCAAGGTAAGTTATGAAATATCGGTT 58.949 33.333 0.00 0.00 0.00 4.44
5942 6281 7.571025 ACCAAGGTAAGTTATGAAATATCGGT 58.429 34.615 0.00 0.00 0.00 4.69
5943 6282 8.446599 AACCAAGGTAAGTTATGAAATATCGG 57.553 34.615 0.00 0.00 0.00 4.18
5990 6329 9.189156 ACTGTTATTGCAGACCATTATTATTGT 57.811 29.630 0.00 0.00 39.62 2.71
6021 6360 2.361085 ATTTCTCACCCCCACTACCT 57.639 50.000 0.00 0.00 0.00 3.08
6155 6495 5.127194 TCTCCTATCGTTAGTCAGTGCAAAT 59.873 40.000 0.00 0.00 0.00 2.32
6178 6518 2.578714 CGGGGCCTAGAGGAGCATC 61.579 68.421 0.84 0.00 37.39 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.