Multiple sequence alignment - TraesCS5B01G199100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G199100 chr5B 100.000 4743 0 0 1 4743 358819538 358814796 0.000000e+00 8759
1 TraesCS5B01G199100 chr5B 83.168 303 43 7 331 632 94672621 94672326 2.180000e-68 270
2 TraesCS5B01G199100 chr5B 97.037 135 2 2 2499 2631 292392262 292392128 4.780000e-55 226
3 TraesCS5B01G199100 chr5B 91.824 159 9 3 2490 2644 604998687 604998845 7.990000e-53 219
4 TraesCS5B01G199100 chr5B 93.662 142 8 1 2492 2632 563340641 563340500 1.340000e-50 211
5 TraesCS5B01G199100 chr5A 92.962 2174 80 27 2622 4743 406523056 406520904 0.000000e+00 3099
6 TraesCS5B01G199100 chr5A 86.533 1938 104 58 635 2500 406524905 406523053 0.000000e+00 1988
7 TraesCS5B01G199100 chr5A 89.474 114 12 0 148 261 406525238 406525125 1.380000e-30 145
8 TraesCS5B01G199100 chr5A 83.571 140 13 8 153 282 406525722 406525583 6.450000e-24 122
9 TraesCS5B01G199100 chr5D 90.909 2035 77 32 2622 4584 312438531 312436533 0.000000e+00 2634
10 TraesCS5B01G199100 chr5D 88.790 1454 66 47 635 2050 312440307 312438913 0.000000e+00 1692
11 TraesCS5B01G199100 chr5D 92.537 402 14 7 2099 2500 312438913 312438528 3.200000e-156 562
12 TraesCS5B01G199100 chr5D 90.909 132 6 1 4615 4740 312436534 312436403 6.310000e-39 172
13 TraesCS5B01G199100 chr5D 88.596 114 13 0 148 261 312440640 312440527 6.400000e-29 139
14 TraesCS5B01G199100 chr5D 84.286 140 12 8 153 282 312441124 312440985 1.390000e-25 128
15 TraesCS5B01G199100 chr4D 82.251 862 58 38 635 1430 274235619 274236451 0.000000e+00 656
16 TraesCS5B01G199100 chr7B 85.246 305 44 1 329 633 393046866 393046563 3.560000e-81 313
17 TraesCS5B01G199100 chr7B 95.556 135 6 0 2492 2626 489146907 489146773 2.870000e-52 217
18 TraesCS5B01G199100 chr2B 83.660 306 46 3 329 633 698970876 698971178 7.770000e-73 285
19 TraesCS5B01G199100 chr2B 95.652 138 5 1 2491 2628 210262694 210262830 2.220000e-53 220
20 TraesCS5B01G199100 chr2B 95.588 136 6 0 2490 2625 547962478 547962613 7.990000e-53 219
21 TraesCS5B01G199100 chr4A 83.019 318 25 18 635 926 292832911 292832597 1.310000e-65 261
22 TraesCS5B01G199100 chr3B 96.269 134 3 2 2497 2629 793274096 793274228 7.990000e-53 219
23 TraesCS5B01G199100 chr3B 91.250 160 10 4 2494 2652 797463868 797464024 1.030000e-51 215
24 TraesCS5B01G199100 chr1B 93.662 142 8 1 2499 2639 372226509 372226368 1.340000e-50 211


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G199100 chr5B 358814796 358819538 4742 True 8759.000000 8759 100.000000 1 4743 1 chr5B.!!$R3 4742
1 TraesCS5B01G199100 chr5A 406520904 406525722 4818 True 1338.500000 3099 88.135000 148 4743 4 chr5A.!!$R1 4595
2 TraesCS5B01G199100 chr5D 312436403 312441124 4721 True 887.833333 2634 89.337833 148 4740 6 chr5D.!!$R1 4592
3 TraesCS5B01G199100 chr4D 274235619 274236451 832 False 656.000000 656 82.251000 635 1430 1 chr4D.!!$F1 795

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
126 127 0.034337 ATGTGTAAAGTGCGGGTCGT 59.966 50.0 0.00 0.0 0.00 4.34 F
396 888 0.106519 ATAGGGTTGGAGTGGCATGC 60.107 55.0 9.90 9.9 0.00 4.06 F
1541 2141 0.179145 AGACAGCCATACGTACACGC 60.179 55.0 0.00 0.0 44.43 5.34 F
1765 2365 0.394352 ATCAGGGCGTGTGGGATTTC 60.394 55.0 7.12 0.0 0.00 2.17 F
2490 3116 0.492730 TAACTACAGGGGTCCCACCA 59.507 55.0 10.98 0.0 41.02 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1478 2076 0.032952 GTTAGTGACGTGCAGGGTCA 59.967 55.0 14.73 14.73 41.82 4.02 R
1749 2349 0.112412 AAAGAAATCCCACACGCCCT 59.888 50.0 0.00 0.00 0.00 5.19 R
2602 3228 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.00 44.66 2.12 R
2604 3230 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.0 5.23 0.00 44.66 1.40 R
4218 4915 0.035056 CCTCCTTGACCACCACCATC 60.035 60.0 0.00 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 8.049027 CACAATATTTAGTTTGTGTGTGTGTG 57.951 34.615 7.45 0.00 44.79 3.82
44 45 7.700234 CACAATATTTAGTTTGTGTGTGTGTGT 59.300 33.333 7.45 0.00 44.79 3.72
45 46 7.700234 ACAATATTTAGTTTGTGTGTGTGTGTG 59.300 33.333 0.00 0.00 34.87 3.82
48 49 1.539388 AGTTTGTGTGTGTGTGTGTGG 59.461 47.619 0.00 0.00 0.00 4.17
49 50 0.884514 TTTGTGTGTGTGTGTGTGGG 59.115 50.000 0.00 0.00 0.00 4.61
50 51 0.250945 TTGTGTGTGTGTGTGTGGGT 60.251 50.000 0.00 0.00 0.00 4.51
51 52 0.957888 TGTGTGTGTGTGTGTGGGTG 60.958 55.000 0.00 0.00 0.00 4.61
52 53 2.043405 TGTGTGTGTGTGTGGGTGC 61.043 57.895 0.00 0.00 0.00 5.01
53 54 2.821810 TGTGTGTGTGTGGGTGCG 60.822 61.111 0.00 0.00 0.00 5.34
54 55 2.822255 GTGTGTGTGTGGGTGCGT 60.822 61.111 0.00 0.00 0.00 5.24
55 56 2.821810 TGTGTGTGTGGGTGCGTG 60.822 61.111 0.00 0.00 0.00 5.34
56 57 4.250431 GTGTGTGTGGGTGCGTGC 62.250 66.667 0.00 0.00 0.00 5.34
81 82 4.054455 CGCGCGCGTGTGTTAACT 62.054 61.111 42.49 0.00 34.35 2.24
82 83 2.202008 GCGCGCGTGTGTTAACTC 60.202 61.111 32.35 6.30 0.00 3.01
83 84 2.934324 GCGCGCGTGTGTTAACTCA 61.934 57.895 32.35 6.72 0.00 3.41
84 85 1.127817 CGCGCGTGTGTTAACTCAG 59.872 57.895 24.19 6.67 0.00 3.35
85 86 1.272784 CGCGCGTGTGTTAACTCAGA 61.273 55.000 24.19 0.00 0.00 3.27
88 89 2.390938 CGCGTGTGTTAACTCAGAAGA 58.609 47.619 10.50 0.00 0.00 2.87
89 90 2.792674 CGCGTGTGTTAACTCAGAAGAA 59.207 45.455 10.50 0.00 0.00 2.52
90 91 3.244345 CGCGTGTGTTAACTCAGAAGAAA 59.756 43.478 10.50 0.00 0.00 2.52
91 92 4.515432 GCGTGTGTTAACTCAGAAGAAAC 58.485 43.478 10.50 0.00 0.00 2.78
92 93 4.552184 GCGTGTGTTAACTCAGAAGAAACC 60.552 45.833 10.50 0.00 0.00 3.27
93 94 4.317839 CGTGTGTTAACTCAGAAGAAACCG 60.318 45.833 10.50 4.95 0.00 4.44
94 95 4.807304 GTGTGTTAACTCAGAAGAAACCGA 59.193 41.667 10.50 0.00 0.00 4.69
95 96 5.047847 TGTGTTAACTCAGAAGAAACCGAG 58.952 41.667 7.22 0.00 0.00 4.63
98 99 5.010314 TGTTAACTCAGAAGAAACCGAGCTA 59.990 40.000 7.22 0.00 0.00 3.32
99 100 3.579335 ACTCAGAAGAAACCGAGCTAC 57.421 47.619 0.00 0.00 0.00 3.58
100 101 2.231721 ACTCAGAAGAAACCGAGCTACC 59.768 50.000 0.00 0.00 0.00 3.18
101 102 2.494073 CTCAGAAGAAACCGAGCTACCT 59.506 50.000 0.00 0.00 0.00 3.08
102 103 3.693807 TCAGAAGAAACCGAGCTACCTA 58.306 45.455 0.00 0.00 0.00 3.08
103 104 3.695060 TCAGAAGAAACCGAGCTACCTAG 59.305 47.826 0.00 0.00 0.00 3.02
118 119 4.267928 GCTACCTAGCGAATGTGTAAAGTG 59.732 45.833 0.00 0.00 39.82 3.16
120 121 2.029244 CCTAGCGAATGTGTAAAGTGCG 59.971 50.000 0.00 0.00 0.00 5.34
121 122 0.796312 AGCGAATGTGTAAAGTGCGG 59.204 50.000 0.00 0.00 0.00 5.69
122 123 0.179200 GCGAATGTGTAAAGTGCGGG 60.179 55.000 0.00 0.00 0.00 6.13
123 124 1.153353 CGAATGTGTAAAGTGCGGGT 58.847 50.000 0.00 0.00 0.00 5.28
124 125 1.127951 CGAATGTGTAAAGTGCGGGTC 59.872 52.381 0.00 0.00 0.00 4.46
125 126 1.127951 GAATGTGTAAAGTGCGGGTCG 59.872 52.381 0.00 0.00 0.00 4.79
126 127 0.034337 ATGTGTAAAGTGCGGGTCGT 59.966 50.000 0.00 0.00 0.00 4.34
128 129 0.509929 GTGTAAAGTGCGGGTCGTTC 59.490 55.000 0.00 0.00 0.00 3.95
129 130 0.940519 TGTAAAGTGCGGGTCGTTCG 60.941 55.000 0.00 0.00 0.00 3.95
132 133 1.289109 AAAGTGCGGGTCGTTCGATG 61.289 55.000 0.00 0.00 0.00 3.84
134 135 3.687102 TGCGGGTCGTTCGATGGT 61.687 61.111 0.00 0.00 0.00 3.55
135 136 2.341875 TGCGGGTCGTTCGATGGTA 61.342 57.895 0.00 0.00 0.00 3.25
137 138 1.143969 GCGGGTCGTTCGATGGTAAG 61.144 60.000 0.00 0.00 0.00 2.34
140 141 1.475682 GGGTCGTTCGATGGTAAGACT 59.524 52.381 0.00 0.00 0.00 3.24
141 142 2.684881 GGGTCGTTCGATGGTAAGACTA 59.315 50.000 0.00 0.00 0.00 2.59
142 143 3.317430 GGGTCGTTCGATGGTAAGACTAT 59.683 47.826 0.00 0.00 0.00 2.12
144 145 4.288531 GTCGTTCGATGGTAAGACTATGG 58.711 47.826 0.00 0.00 0.00 2.74
145 146 4.036027 GTCGTTCGATGGTAAGACTATGGA 59.964 45.833 0.00 0.00 0.00 3.41
146 147 4.036027 TCGTTCGATGGTAAGACTATGGAC 59.964 45.833 0.00 0.00 0.00 4.02
147 148 4.036498 CGTTCGATGGTAAGACTATGGACT 59.964 45.833 0.00 0.00 0.00 3.85
148 149 5.521544 GTTCGATGGTAAGACTATGGACTC 58.478 45.833 0.00 0.00 0.00 3.36
149 150 5.050126 TCGATGGTAAGACTATGGACTCT 57.950 43.478 0.00 0.00 0.00 3.24
150 151 4.822350 TCGATGGTAAGACTATGGACTCTG 59.178 45.833 0.00 0.00 0.00 3.35
161 499 7.013220 AGACTATGGACTCTGCCATTAGATTA 58.987 38.462 0.00 0.00 46.29 1.75
171 509 9.461312 ACTCTGCCATTAGATTATTGTGTTTAA 57.539 29.630 0.00 0.00 0.00 1.52
237 575 6.985645 TGCATTTTTGGAATTCACATATAGGC 59.014 34.615 7.93 7.40 0.00 3.93
238 576 6.424812 GCATTTTTGGAATTCACATATAGGCC 59.575 38.462 7.93 0.00 0.00 5.19
241 579 7.817418 TTTTGGAATTCACATATAGGCCTAC 57.183 36.000 16.61 0.00 0.00 3.18
243 581 4.020573 TGGAATTCACATATAGGCCTACGG 60.021 45.833 16.61 10.10 0.00 4.02
261 599 1.131126 CGGTTGTCATCAGTGCATTCC 59.869 52.381 0.00 0.00 0.00 3.01
263 601 2.095059 GGTTGTCATCAGTGCATTCCAC 60.095 50.000 0.00 0.00 45.01 4.02
278 757 8.388484 GTGCATTCCACTAGAATTCATAGATT 57.612 34.615 8.44 0.00 42.86 2.40
331 823 3.126001 TGTTTCAGACACTGCTTAGGG 57.874 47.619 0.00 0.00 32.00 3.53
332 824 1.807142 GTTTCAGACACTGCTTAGGGC 59.193 52.381 0.00 0.00 42.22 5.19
333 825 0.324943 TTCAGACACTGCTTAGGGCC 59.675 55.000 0.00 0.00 40.92 5.80
334 826 0.545309 TCAGACACTGCTTAGGGCCT 60.545 55.000 12.58 12.58 40.92 5.19
335 827 0.326264 CAGACACTGCTTAGGGCCTT 59.674 55.000 13.45 0.00 40.92 4.35
336 828 1.068121 AGACACTGCTTAGGGCCTTT 58.932 50.000 13.45 0.00 40.92 3.11
337 829 1.425448 AGACACTGCTTAGGGCCTTTT 59.575 47.619 13.45 0.00 40.92 2.27
338 830 2.158460 AGACACTGCTTAGGGCCTTTTT 60.158 45.455 13.45 0.00 40.92 1.94
339 831 1.963515 ACACTGCTTAGGGCCTTTTTG 59.036 47.619 13.45 3.48 40.92 2.44
340 832 1.273327 CACTGCTTAGGGCCTTTTTGG 59.727 52.381 13.45 2.42 40.92 3.28
341 833 1.133167 ACTGCTTAGGGCCTTTTTGGT 60.133 47.619 13.45 3.13 40.92 3.67
342 834 1.970640 CTGCTTAGGGCCTTTTTGGTT 59.029 47.619 13.45 0.00 40.92 3.67
343 835 2.368548 CTGCTTAGGGCCTTTTTGGTTT 59.631 45.455 13.45 0.00 40.92 3.27
344 836 2.103941 TGCTTAGGGCCTTTTTGGTTTG 59.896 45.455 13.45 0.00 40.92 2.93
345 837 2.104111 GCTTAGGGCCTTTTTGGTTTGT 59.896 45.455 13.45 0.00 38.35 2.83
346 838 3.322541 GCTTAGGGCCTTTTTGGTTTGTA 59.677 43.478 13.45 0.00 38.35 2.41
347 839 4.560716 GCTTAGGGCCTTTTTGGTTTGTAG 60.561 45.833 13.45 0.00 38.35 2.74
348 840 2.325484 AGGGCCTTTTTGGTTTGTAGG 58.675 47.619 0.00 0.00 38.35 3.18
349 841 2.090999 AGGGCCTTTTTGGTTTGTAGGA 60.091 45.455 0.00 0.00 38.35 2.94
350 842 2.903784 GGGCCTTTTTGGTTTGTAGGAT 59.096 45.455 0.84 0.00 38.35 3.24
351 843 3.326588 GGGCCTTTTTGGTTTGTAGGATT 59.673 43.478 0.84 0.00 38.35 3.01
352 844 4.202419 GGGCCTTTTTGGTTTGTAGGATTT 60.202 41.667 0.84 0.00 38.35 2.17
353 845 5.373222 GGCCTTTTTGGTTTGTAGGATTTT 58.627 37.500 0.00 0.00 38.35 1.82
354 846 6.464607 GGGCCTTTTTGGTTTGTAGGATTTTA 60.465 38.462 0.84 0.00 38.35 1.52
355 847 6.993308 GGCCTTTTTGGTTTGTAGGATTTTAA 59.007 34.615 0.00 0.00 38.35 1.52
356 848 7.499563 GGCCTTTTTGGTTTGTAGGATTTTAAA 59.500 33.333 0.00 0.00 38.35 1.52
357 849 8.894731 GCCTTTTTGGTTTGTAGGATTTTAAAA 58.105 29.630 2.51 2.51 38.35 1.52
363 855 9.810545 TTGGTTTGTAGGATTTTAAAAACAGAG 57.189 29.630 4.44 0.00 34.04 3.35
364 856 9.191479 TGGTTTGTAGGATTTTAAAAACAGAGA 57.809 29.630 4.44 0.00 34.04 3.10
392 884 3.646736 AAAGTATAGGGTTGGAGTGGC 57.353 47.619 0.00 0.00 0.00 5.01
393 885 2.263895 AGTATAGGGTTGGAGTGGCA 57.736 50.000 0.00 0.00 0.00 4.92
394 886 2.776665 AGTATAGGGTTGGAGTGGCAT 58.223 47.619 0.00 0.00 0.00 4.40
395 887 2.439507 AGTATAGGGTTGGAGTGGCATG 59.560 50.000 0.00 0.00 0.00 4.06
396 888 0.106519 ATAGGGTTGGAGTGGCATGC 60.107 55.000 9.90 9.90 0.00 4.06
397 889 1.207488 TAGGGTTGGAGTGGCATGCT 61.207 55.000 18.92 0.00 0.00 3.79
398 890 1.607467 GGGTTGGAGTGGCATGCTT 60.607 57.895 18.92 3.44 0.00 3.91
399 891 0.323360 GGGTTGGAGTGGCATGCTTA 60.323 55.000 18.92 4.21 0.00 3.09
400 892 1.686115 GGGTTGGAGTGGCATGCTTAT 60.686 52.381 18.92 2.96 0.00 1.73
401 893 2.102578 GGTTGGAGTGGCATGCTTATT 58.897 47.619 18.92 3.85 0.00 1.40
402 894 2.497273 GGTTGGAGTGGCATGCTTATTT 59.503 45.455 18.92 0.00 0.00 1.40
403 895 3.699038 GGTTGGAGTGGCATGCTTATTTA 59.301 43.478 18.92 0.00 0.00 1.40
404 896 4.159506 GGTTGGAGTGGCATGCTTATTTAA 59.840 41.667 18.92 4.36 0.00 1.52
405 897 5.337169 GGTTGGAGTGGCATGCTTATTTAAA 60.337 40.000 18.92 2.02 0.00 1.52
406 898 6.340522 GTTGGAGTGGCATGCTTATTTAAAT 58.659 36.000 18.92 5.89 0.00 1.40
407 899 6.543430 TGGAGTGGCATGCTTATTTAAATT 57.457 33.333 18.92 0.00 0.00 1.82
408 900 6.572519 TGGAGTGGCATGCTTATTTAAATTC 58.427 36.000 18.92 0.00 0.00 2.17
409 901 6.380846 TGGAGTGGCATGCTTATTTAAATTCT 59.619 34.615 18.92 0.00 0.00 2.40
410 902 7.559533 TGGAGTGGCATGCTTATTTAAATTCTA 59.440 33.333 18.92 0.00 0.00 2.10
411 903 8.579863 GGAGTGGCATGCTTATTTAAATTCTAT 58.420 33.333 18.92 0.00 0.00 1.98
414 906 9.846248 GTGGCATGCTTATTTAAATTCTATAGG 57.154 33.333 18.92 0.00 0.00 2.57
415 907 9.806448 TGGCATGCTTATTTAAATTCTATAGGA 57.194 29.630 18.92 0.00 0.00 2.94
429 921 9.911788 AAATTCTATAGGATCAACAATGAGTGT 57.088 29.630 0.00 0.00 44.64 3.55
441 933 5.571784 ACAATGAGTGTTTGATGGCATAG 57.428 39.130 0.00 0.00 37.01 2.23
442 934 5.255687 ACAATGAGTGTTTGATGGCATAGA 58.744 37.500 0.00 0.00 37.01 1.98
443 935 5.711506 ACAATGAGTGTTTGATGGCATAGAA 59.288 36.000 0.00 0.00 37.01 2.10
444 936 6.209192 ACAATGAGTGTTTGATGGCATAGAAA 59.791 34.615 0.00 0.00 37.01 2.52
445 937 6.839124 ATGAGTGTTTGATGGCATAGAAAA 57.161 33.333 0.00 0.00 0.00 2.29
446 938 6.647334 TGAGTGTTTGATGGCATAGAAAAA 57.353 33.333 0.00 0.00 0.00 1.94
487 979 8.664669 AAAAAGGTTGGAGTGGATGTTATATT 57.335 30.769 0.00 0.00 0.00 1.28
488 980 8.664669 AAAAGGTTGGAGTGGATGTTATATTT 57.335 30.769 0.00 0.00 0.00 1.40
489 981 7.881775 AAGGTTGGAGTGGATGTTATATTTC 57.118 36.000 0.00 0.00 0.00 2.17
490 982 6.365520 AGGTTGGAGTGGATGTTATATTTCC 58.634 40.000 0.00 0.00 0.00 3.13
491 983 6.160459 AGGTTGGAGTGGATGTTATATTTCCT 59.840 38.462 0.00 0.00 0.00 3.36
492 984 7.349859 AGGTTGGAGTGGATGTTATATTTCCTA 59.650 37.037 0.00 0.00 0.00 2.94
493 985 8.164070 GGTTGGAGTGGATGTTATATTTCCTAT 58.836 37.037 0.00 0.00 0.00 2.57
521 1013 9.747898 AAATGTTGTACAAAAGATACCATAGGA 57.252 29.630 10.51 0.00 0.00 2.94
522 1014 9.747898 AATGTTGTACAAAAGATACCATAGGAA 57.252 29.630 10.51 0.00 0.00 3.36
523 1015 9.747898 ATGTTGTACAAAAGATACCATAGGAAA 57.252 29.630 10.51 0.00 0.00 3.13
524 1016 9.575868 TGTTGTACAAAAGATACCATAGGAAAA 57.424 29.630 10.51 0.00 0.00 2.29
535 1027 9.813826 AGATACCATAGGAAAAATTTCTATGGG 57.186 33.333 29.77 19.68 43.42 4.00
536 1028 9.807921 GATACCATAGGAAAAATTTCTATGGGA 57.192 33.333 29.77 26.41 43.42 4.37
539 1031 9.506042 ACCATAGGAAAAATTTCTATGGGATTT 57.494 29.630 29.77 16.99 43.42 2.17
540 1032 9.987272 CCATAGGAAAAATTTCTATGGGATTTC 57.013 33.333 24.19 9.51 40.29 2.17
545 1037 9.330063 GGAAAAATTTCTATGGGATTTCAATCC 57.670 33.333 9.79 9.79 43.66 3.01
560 1052 7.830099 ATTTCAATCCTATGAATCCAAGGAC 57.170 36.000 3.20 0.00 42.08 3.85
561 1053 5.310409 TCAATCCTATGAATCCAAGGACC 57.690 43.478 3.20 0.00 42.08 4.46
562 1054 4.726317 TCAATCCTATGAATCCAAGGACCA 59.274 41.667 3.20 0.00 42.08 4.02
563 1055 4.989875 ATCCTATGAATCCAAGGACCAG 57.010 45.455 3.20 0.00 42.08 4.00
564 1056 2.439507 TCCTATGAATCCAAGGACCAGC 59.560 50.000 0.00 0.00 34.46 4.85
565 1057 2.173356 CCTATGAATCCAAGGACCAGCA 59.827 50.000 0.00 0.00 31.64 4.41
566 1058 3.181436 CCTATGAATCCAAGGACCAGCAT 60.181 47.826 0.00 0.00 31.64 3.79
567 1059 4.042062 CCTATGAATCCAAGGACCAGCATA 59.958 45.833 0.00 0.00 31.64 3.14
568 1060 3.565764 TGAATCCAAGGACCAGCATAG 57.434 47.619 0.00 0.00 0.00 2.23
569 1061 2.173356 TGAATCCAAGGACCAGCATAGG 59.827 50.000 0.00 0.00 0.00 2.57
570 1062 2.196742 ATCCAAGGACCAGCATAGGA 57.803 50.000 0.00 0.00 0.00 2.94
571 1063 1.965414 TCCAAGGACCAGCATAGGAA 58.035 50.000 0.00 0.00 0.00 3.36
572 1064 2.274542 TCCAAGGACCAGCATAGGAAA 58.725 47.619 0.00 0.00 0.00 3.13
573 1065 2.647299 TCCAAGGACCAGCATAGGAAAA 59.353 45.455 0.00 0.00 0.00 2.29
574 1066 3.075283 TCCAAGGACCAGCATAGGAAAAA 59.925 43.478 0.00 0.00 0.00 1.94
575 1067 4.026052 CCAAGGACCAGCATAGGAAAAAT 58.974 43.478 0.00 0.00 0.00 1.82
576 1068 4.098501 CCAAGGACCAGCATAGGAAAAATC 59.901 45.833 0.00 0.00 0.00 2.17
577 1069 3.903467 AGGACCAGCATAGGAAAAATCC 58.097 45.455 0.00 0.00 0.00 3.01
578 1070 3.529319 AGGACCAGCATAGGAAAAATCCT 59.471 43.478 2.51 2.51 43.62 3.24
579 1071 4.726825 AGGACCAGCATAGGAAAAATCCTA 59.273 41.667 7.03 7.03 45.45 2.94
580 1072 5.193728 AGGACCAGCATAGGAAAAATCCTAA 59.806 40.000 8.56 0.00 44.64 2.69
581 1073 5.532779 GGACCAGCATAGGAAAAATCCTAAG 59.467 44.000 8.56 5.83 44.64 2.18
582 1074 5.449553 ACCAGCATAGGAAAAATCCTAAGG 58.550 41.667 8.56 10.26 44.64 2.69
583 1075 5.193728 ACCAGCATAGGAAAAATCCTAAGGA 59.806 40.000 8.56 0.00 44.64 3.36
584 1076 6.126068 ACCAGCATAGGAAAAATCCTAAGGAT 60.126 38.462 8.56 0.00 45.46 3.24
633 1125 3.777087 TCATTTGAATGAAAGGAGCCCA 58.223 40.909 4.02 0.00 42.11 5.36
654 1146 4.501714 GCATGCATGGCACGTGGG 62.502 66.667 27.34 0.00 43.04 4.61
655 1147 4.501714 CATGCATGGCACGTGGGC 62.502 66.667 19.40 10.95 43.04 5.36
701 1194 0.606604 TCAGTTACGGAGGCTGTTCC 59.393 55.000 0.00 0.00 0.00 3.62
718 1214 6.224584 GCTGTTCCTCTTTTCTTGTACTACT 58.775 40.000 0.00 0.00 0.00 2.57
721 1217 8.241497 TGTTCCTCTTTTCTTGTACTACTACA 57.759 34.615 0.00 0.00 0.00 2.74
722 1218 8.698210 TGTTCCTCTTTTCTTGTACTACTACAA 58.302 33.333 0.00 0.00 40.01 2.41
723 1219 8.976471 GTTCCTCTTTTCTTGTACTACTACAAC 58.024 37.037 0.00 0.00 37.85 3.32
724 1220 8.241497 TCCTCTTTTCTTGTACTACTACAACA 57.759 34.615 0.00 0.00 37.85 3.33
725 1221 8.867097 TCCTCTTTTCTTGTACTACTACAACAT 58.133 33.333 0.00 0.00 37.85 2.71
754 1250 4.084849 CGCAGAGGATAAAAAGCTCATACG 60.085 45.833 0.00 0.00 0.00 3.06
805 1315 1.484653 TGTCCTACACTTGCACACACT 59.515 47.619 0.00 0.00 0.00 3.55
807 1317 1.760029 TCCTACACTTGCACACACTCA 59.240 47.619 0.00 0.00 0.00 3.41
809 1319 2.549926 CTACACTTGCACACACTCACA 58.450 47.619 0.00 0.00 0.00 3.58
811 1321 1.339055 ACACTTGCACACACTCACACT 60.339 47.619 0.00 0.00 0.00 3.55
813 1323 2.541346 CACTTGCACACACTCACACTAG 59.459 50.000 0.00 0.00 0.00 2.57
814 1324 1.528586 CTTGCACACACTCACACTAGC 59.471 52.381 0.00 0.00 0.00 3.42
815 1325 0.752658 TGCACACACTCACACTAGCT 59.247 50.000 0.00 0.00 0.00 3.32
816 1326 1.143305 GCACACACTCACACTAGCTG 58.857 55.000 0.00 0.00 0.00 4.24
938 1472 2.772191 TGCTCCACCACCACCACT 60.772 61.111 0.00 0.00 0.00 4.00
939 1473 2.281761 GCTCCACCACCACCACTG 60.282 66.667 0.00 0.00 0.00 3.66
941 1475 2.772191 TCCACCACCACCACTGCT 60.772 61.111 0.00 0.00 0.00 4.24
1111 1654 3.315142 GACGATGGCTGGTGCTCCA 62.315 63.158 7.39 7.39 42.05 3.86
1255 1816 0.374758 CGACTCCGTTGCATGGATTG 59.625 55.000 8.51 1.74 31.81 2.67
1484 2082 3.382832 CTCGCCGTCCTTGACCCT 61.383 66.667 0.00 0.00 0.00 4.34
1485 2083 3.649277 CTCGCCGTCCTTGACCCTG 62.649 68.421 0.00 0.00 0.00 4.45
1494 2092 1.069765 CTTGACCCTGCACGTCACT 59.930 57.895 10.67 0.00 39.89 3.41
1499 2097 1.736645 CCCTGCACGTCACTAACCG 60.737 63.158 0.00 0.00 0.00 4.44
1508 2108 1.227292 TCACTAACCGCGCACACAA 60.227 52.632 8.75 0.00 0.00 3.33
1527 2127 4.153655 CACAAATCTCACCATGTCAGACAG 59.846 45.833 9.64 0.00 0.00 3.51
1528 2128 2.687700 ATCTCACCATGTCAGACAGC 57.312 50.000 9.64 0.00 0.00 4.40
1529 2129 0.610174 TCTCACCATGTCAGACAGCC 59.390 55.000 9.64 0.00 0.00 4.85
1530 2130 0.322648 CTCACCATGTCAGACAGCCA 59.677 55.000 9.64 0.00 0.00 4.75
1531 2131 0.986527 TCACCATGTCAGACAGCCAT 59.013 50.000 9.64 0.00 0.00 4.40
1532 2132 2.169144 CTCACCATGTCAGACAGCCATA 59.831 50.000 9.64 0.00 0.00 2.74
1533 2133 2.093500 TCACCATGTCAGACAGCCATAC 60.093 50.000 9.64 0.00 0.00 2.39
1534 2134 1.134699 ACCATGTCAGACAGCCATACG 60.135 52.381 9.64 0.00 0.00 3.06
1535 2135 1.134699 CCATGTCAGACAGCCATACGT 60.135 52.381 9.64 0.00 0.00 3.57
1536 2136 2.100749 CCATGTCAGACAGCCATACGTA 59.899 50.000 9.64 0.00 0.00 3.57
1537 2137 2.933495 TGTCAGACAGCCATACGTAC 57.067 50.000 0.00 0.00 0.00 3.67
1538 2138 2.164338 TGTCAGACAGCCATACGTACA 58.836 47.619 0.00 0.00 0.00 2.90
1539 2139 2.094906 TGTCAGACAGCCATACGTACAC 60.095 50.000 0.00 0.00 0.00 2.90
1540 2140 1.131693 TCAGACAGCCATACGTACACG 59.868 52.381 0.00 0.00 46.33 4.49
1541 2141 0.179145 AGACAGCCATACGTACACGC 60.179 55.000 0.00 0.00 44.43 5.34
1542 2142 0.179145 GACAGCCATACGTACACGCT 60.179 55.000 0.00 1.92 44.43 5.07
1543 2143 2.288013 CAGCCATACGTACACGCTG 58.712 57.895 19.79 19.79 44.43 5.18
1544 2144 1.141019 AGCCATACGTACACGCTGG 59.859 57.895 15.78 15.78 43.85 4.85
1545 2145 1.881252 GCCATACGTACACGCTGGG 60.881 63.158 19.50 11.89 42.33 4.45
1546 2146 1.881252 CCATACGTACACGCTGGGC 60.881 63.158 13.40 0.00 44.43 5.36
1581 2181 3.871594 GCGTATCAGATAACCAGTTTGCT 59.128 43.478 0.00 0.00 0.00 3.91
1596 2196 4.328440 CAGTTTGCTCTCTGTATCTTTCGG 59.672 45.833 0.00 0.00 0.00 4.30
1633 2233 3.089784 CCGATGCCGTTCTTTCCG 58.910 61.111 0.00 0.00 0.00 4.30
1634 2234 1.740296 CCGATGCCGTTCTTTCCGT 60.740 57.895 0.00 0.00 0.00 4.69
1698 2298 3.119743 GCTGCTAGCACATCAATTCAACA 60.120 43.478 14.93 0.00 41.89 3.33
1749 2349 2.600790 GGAATGAATGGGGCATCATCA 58.399 47.619 0.00 0.00 0.00 3.07
1753 2353 1.152398 AATGGGGCATCATCAGGGC 60.152 57.895 0.00 0.00 0.00 5.19
1754 2354 2.989173 AATGGGGCATCATCAGGGCG 62.989 60.000 0.00 0.00 0.00 6.13
1755 2355 4.195334 GGGGCATCATCAGGGCGT 62.195 66.667 0.00 0.00 0.00 5.68
1756 2356 2.903855 GGGCATCATCAGGGCGTG 60.904 66.667 0.00 0.00 0.00 5.34
1757 2357 2.124570 GGCATCATCAGGGCGTGT 60.125 61.111 7.12 0.00 0.00 4.49
1758 2358 2.475466 GGCATCATCAGGGCGTGTG 61.475 63.158 7.12 5.41 0.00 3.82
1765 2365 0.394352 ATCAGGGCGTGTGGGATTTC 60.394 55.000 7.12 0.00 0.00 2.17
1816 2420 1.061799 CTTTGCAGCGTGCTTTAGCG 61.062 55.000 10.54 0.00 45.31 4.26
1892 2505 1.607467 GCCCCTTGTGCTCCACATT 60.607 57.895 0.00 0.00 44.16 2.71
1908 2521 6.092955 TCCACATTCTCGTGTTAAGTAAGT 57.907 37.500 0.00 0.00 34.98 2.24
1943 2556 3.134081 CCGTATGGGATAGTGTTTGGAGT 59.866 47.826 0.00 0.00 38.47 3.85
1948 2561 4.422057 TGGGATAGTGTTTGGAGTCACTA 58.578 43.478 7.34 7.34 46.45 2.74
1966 2579 6.014413 AGTCACTAGCGTCAGGTATCTATCTA 60.014 42.308 0.00 0.00 0.00 1.98
1971 2584 6.608539 AGCGTCAGGTATCTATCTACTCTA 57.391 41.667 0.00 0.00 0.00 2.43
1972 2585 6.400568 AGCGTCAGGTATCTATCTACTCTAC 58.599 44.000 0.00 0.00 0.00 2.59
1973 2586 6.211986 AGCGTCAGGTATCTATCTACTCTACT 59.788 42.308 0.00 0.00 0.00 2.57
1976 2589 7.333323 GTCAGGTATCTATCTACTCTACTCCC 58.667 46.154 0.00 0.00 0.00 4.30
1977 2590 7.023744 TCAGGTATCTATCTACTCTACTCCCA 58.976 42.308 0.00 0.00 0.00 4.37
1978 2591 7.181305 TCAGGTATCTATCTACTCTACTCCCAG 59.819 44.444 0.00 0.00 0.00 4.45
1979 2592 7.026874 AGGTATCTATCTACTCTACTCCCAGT 58.973 42.308 0.00 0.00 0.00 4.00
1980 2593 7.518303 AGGTATCTATCTACTCTACTCCCAGTT 59.482 40.741 0.00 0.00 0.00 3.16
1981 2594 7.825761 GGTATCTATCTACTCTACTCCCAGTTC 59.174 44.444 0.00 0.00 0.00 3.01
1982 2595 6.190346 TCTATCTACTCTACTCCCAGTTCC 57.810 45.833 0.00 0.00 0.00 3.62
1983 2596 4.883021 ATCTACTCTACTCCCAGTTCCA 57.117 45.455 0.00 0.00 0.00 3.53
1984 2597 4.669866 TCTACTCTACTCCCAGTTCCAA 57.330 45.455 0.00 0.00 0.00 3.53
2002 2615 2.606308 CCAAAGTGACTCTGCAATGCAC 60.606 50.000 2.72 0.00 33.79 4.57
2003 2616 0.870393 AAGTGACTCTGCAATGCACG 59.130 50.000 2.72 0.51 33.79 5.34
2005 2618 1.071299 TGACTCTGCAATGCACGGT 59.929 52.632 2.72 5.90 33.79 4.83
2006 2619 1.229975 TGACTCTGCAATGCACGGTG 61.230 55.000 2.72 3.15 33.79 4.94
2007 2620 1.915614 GACTCTGCAATGCACGGTGG 61.916 60.000 2.72 0.00 33.79 4.61
2008 2621 1.672030 CTCTGCAATGCACGGTGGA 60.672 57.895 2.72 7.67 33.79 4.02
2010 2623 2.672651 TGCAATGCACGGTGGAGG 60.673 61.111 2.72 5.06 31.71 4.30
2011 2624 4.120331 GCAATGCACGGTGGAGGC 62.120 66.667 10.60 11.38 0.00 4.70
2012 2625 3.803082 CAATGCACGGTGGAGGCG 61.803 66.667 10.60 0.00 0.00 5.52
2028 2641 3.941188 CGCTGGGGTGGTGACAGT 61.941 66.667 0.00 0.00 44.46 3.55
2051 2675 8.251721 CAGTCAGCAGTAGTAGTTTATTTACCT 58.748 37.037 0.00 0.00 0.00 3.08
2070 2694 2.433970 CCTGGCCAAAGGAAAAGAACAA 59.566 45.455 7.01 0.00 40.02 2.83
2095 2719 1.534175 CGAGAGCTAGCTGTAAACCGG 60.534 57.143 24.99 0.00 0.00 5.28
2180 2806 5.142806 ACACAGGCCCTTGGATTATTTAT 57.857 39.130 0.00 0.00 0.00 1.40
2187 2813 8.306761 CAGGCCCTTGGATTATTTATTTATGTC 58.693 37.037 0.00 0.00 0.00 3.06
2247 2873 2.046892 GCTGGCGTCACTCCATGT 60.047 61.111 0.00 0.00 32.37 3.21
2286 2912 8.786826 TTATTTGTTCCAAGTGATACTACTGG 57.213 34.615 0.00 0.00 0.00 4.00
2288 2914 5.401531 TGTTCCAAGTGATACTACTGGTC 57.598 43.478 0.00 0.00 0.00 4.02
2289 2915 5.084519 TGTTCCAAGTGATACTACTGGTCT 58.915 41.667 0.00 0.00 0.00 3.85
2291 2917 6.152323 TGTTCCAAGTGATACTACTGGTCTAC 59.848 42.308 0.00 0.00 0.00 2.59
2292 2918 6.075949 TCCAAGTGATACTACTGGTCTACT 57.924 41.667 0.00 0.00 0.00 2.57
2293 2919 5.886474 TCCAAGTGATACTACTGGTCTACTG 59.114 44.000 0.00 0.00 0.00 2.74
2294 2920 5.067936 CCAAGTGATACTACTGGTCTACTGG 59.932 48.000 0.00 0.00 0.00 4.00
2295 2921 5.712084 AGTGATACTACTGGTCTACTGGA 57.288 43.478 0.00 0.00 0.00 3.86
2296 2922 6.268855 AGTGATACTACTGGTCTACTGGAT 57.731 41.667 0.00 0.00 0.00 3.41
2297 2923 6.065374 AGTGATACTACTGGTCTACTGGATG 58.935 44.000 0.00 0.00 0.00 3.51
2298 2924 5.241949 GTGATACTACTGGTCTACTGGATGG 59.758 48.000 0.00 0.00 0.00 3.51
2299 2925 3.759815 ACTACTGGTCTACTGGATGGT 57.240 47.619 0.00 0.00 0.00 3.55
2300 2926 3.366396 ACTACTGGTCTACTGGATGGTG 58.634 50.000 0.00 0.00 0.00 4.17
2301 2927 2.623418 ACTGGTCTACTGGATGGTGA 57.377 50.000 0.00 0.00 0.00 4.02
2302 2928 2.902608 ACTGGTCTACTGGATGGTGAA 58.097 47.619 0.00 0.00 0.00 3.18
2303 2929 3.454858 ACTGGTCTACTGGATGGTGAAT 58.545 45.455 0.00 0.00 0.00 2.57
2489 3115 1.489230 CATAACTACAGGGGTCCCACC 59.511 57.143 10.98 0.00 38.92 4.61
2490 3116 0.492730 TAACTACAGGGGTCCCACCA 59.507 55.000 10.98 0.00 41.02 4.17
2496 3122 1.010294 ACAGGGGTCCCACCATATGTA 59.990 52.381 10.98 0.00 41.02 2.29
2497 3123 1.699634 CAGGGGTCCCACCATATGTAG 59.300 57.143 10.98 0.00 41.02 2.74
2498 3124 1.297141 AGGGGTCCCACCATATGTAGT 59.703 52.381 10.98 0.00 41.02 2.73
2499 3125 2.525310 AGGGGTCCCACCATATGTAGTA 59.475 50.000 10.98 0.00 41.02 1.82
2500 3126 2.636403 GGGGTCCCACCATATGTAGTAC 59.364 54.545 10.98 0.00 41.02 2.73
2501 3127 3.584294 GGGTCCCACCATATGTAGTACT 58.416 50.000 1.78 0.00 41.02 2.73
2502 3128 3.971971 GGGTCCCACCATATGTAGTACTT 59.028 47.826 1.78 0.00 41.02 2.24
2503 3129 4.040095 GGGTCCCACCATATGTAGTACTTC 59.960 50.000 1.78 0.00 41.02 3.01
2504 3130 4.040095 GGTCCCACCATATGTAGTACTTCC 59.960 50.000 0.00 0.00 38.42 3.46
2505 3131 4.900054 GTCCCACCATATGTAGTACTTCCT 59.100 45.833 0.00 0.00 0.00 3.36
2506 3132 5.010820 GTCCCACCATATGTAGTACTTCCTC 59.989 48.000 0.00 0.00 0.00 3.71
2507 3133 4.283722 CCCACCATATGTAGTACTTCCTCC 59.716 50.000 0.00 0.00 0.00 4.30
2508 3134 4.022242 CCACCATATGTAGTACTTCCTCCG 60.022 50.000 0.00 0.00 0.00 4.63
2509 3135 4.583489 CACCATATGTAGTACTTCCTCCGT 59.417 45.833 0.00 0.00 0.00 4.69
2510 3136 4.826183 ACCATATGTAGTACTTCCTCCGTC 59.174 45.833 0.00 0.00 0.00 4.79
2511 3137 5.071370 CCATATGTAGTACTTCCTCCGTCT 58.929 45.833 0.00 0.00 0.00 4.18
2512 3138 5.048643 CCATATGTAGTACTTCCTCCGTCTG 60.049 48.000 0.00 0.00 0.00 3.51
2513 3139 3.708403 TGTAGTACTTCCTCCGTCTGA 57.292 47.619 0.00 0.00 0.00 3.27
2514 3140 4.025040 TGTAGTACTTCCTCCGTCTGAA 57.975 45.455 0.00 0.00 0.00 3.02
2515 3141 4.401022 TGTAGTACTTCCTCCGTCTGAAA 58.599 43.478 0.00 0.00 0.00 2.69
2516 3142 4.828939 TGTAGTACTTCCTCCGTCTGAAAA 59.171 41.667 0.00 0.00 0.00 2.29
2517 3143 5.479375 TGTAGTACTTCCTCCGTCTGAAAAT 59.521 40.000 0.00 0.00 0.00 1.82
2518 3144 6.660521 TGTAGTACTTCCTCCGTCTGAAAATA 59.339 38.462 0.00 0.00 0.00 1.40
2519 3145 5.963594 AGTACTTCCTCCGTCTGAAAATAC 58.036 41.667 0.00 0.00 0.00 1.89
2520 3146 5.715753 AGTACTTCCTCCGTCTGAAAATACT 59.284 40.000 0.00 0.00 0.00 2.12
2521 3147 5.485209 ACTTCCTCCGTCTGAAAATACTT 57.515 39.130 0.00 0.00 0.00 2.24
2522 3148 5.238583 ACTTCCTCCGTCTGAAAATACTTG 58.761 41.667 0.00 0.00 0.00 3.16
2523 3149 4.884668 TCCTCCGTCTGAAAATACTTGT 57.115 40.909 0.00 0.00 0.00 3.16
2524 3150 4.817517 TCCTCCGTCTGAAAATACTTGTC 58.182 43.478 0.00 0.00 0.00 3.18
2525 3151 4.282449 TCCTCCGTCTGAAAATACTTGTCA 59.718 41.667 0.00 0.00 0.00 3.58
2526 3152 5.046591 TCCTCCGTCTGAAAATACTTGTCAT 60.047 40.000 0.00 0.00 0.00 3.06
2527 3153 5.292101 CCTCCGTCTGAAAATACTTGTCATC 59.708 44.000 0.00 0.00 0.00 2.92
2528 3154 5.789521 TCCGTCTGAAAATACTTGTCATCA 58.210 37.500 0.00 0.00 0.00 3.07
2529 3155 6.227522 TCCGTCTGAAAATACTTGTCATCAA 58.772 36.000 0.00 0.00 0.00 2.57
2530 3156 6.708502 TCCGTCTGAAAATACTTGTCATCAAA 59.291 34.615 0.00 0.00 32.87 2.69
2531 3157 7.227711 TCCGTCTGAAAATACTTGTCATCAAAA 59.772 33.333 0.00 0.00 32.87 2.44
2532 3158 8.023128 CCGTCTGAAAATACTTGTCATCAAAAT 58.977 33.333 0.00 0.00 32.87 1.82
2533 3159 8.843733 CGTCTGAAAATACTTGTCATCAAAATG 58.156 33.333 0.00 0.00 32.87 2.32
2534 3160 9.132521 GTCTGAAAATACTTGTCATCAAAATGG 57.867 33.333 0.00 0.00 33.42 3.16
2535 3161 9.076781 TCTGAAAATACTTGTCATCAAAATGGA 57.923 29.630 0.00 0.00 33.42 3.41
2536 3162 9.132521 CTGAAAATACTTGTCATCAAAATGGAC 57.867 33.333 0.00 0.00 33.42 4.02
2537 3163 8.637099 TGAAAATACTTGTCATCAAAATGGACA 58.363 29.630 0.00 0.00 33.42 4.02
2538 3164 9.474920 GAAAATACTTGTCATCAAAATGGACAA 57.525 29.630 0.00 0.00 34.59 3.18
2539 3165 9.829507 AAAATACTTGTCATCAAAATGGACAAA 57.170 25.926 7.70 0.00 34.98 2.83
2540 3166 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
2541 3167 9.829507 AATACTTGTCATCAAAATGGACAAAAA 57.170 25.926 7.70 0.55 34.98 1.94
2542 3168 7.775397 ACTTGTCATCAAAATGGACAAAAAG 57.225 32.000 7.70 0.11 34.98 2.27
2543 3169 6.762661 ACTTGTCATCAAAATGGACAAAAAGG 59.237 34.615 7.70 0.11 34.98 3.11
2544 3170 5.609423 TGTCATCAAAATGGACAAAAAGGG 58.391 37.500 0.00 0.00 33.42 3.95
2545 3171 5.365025 TGTCATCAAAATGGACAAAAAGGGA 59.635 36.000 0.00 0.00 33.42 4.20
2546 3172 6.043012 TGTCATCAAAATGGACAAAAAGGGAT 59.957 34.615 0.00 0.00 33.42 3.85
2547 3173 7.234371 TGTCATCAAAATGGACAAAAAGGGATA 59.766 33.333 0.00 0.00 33.42 2.59
2548 3174 8.260114 GTCATCAAAATGGACAAAAAGGGATAT 58.740 33.333 0.00 0.00 33.42 1.63
2549 3175 9.486123 TCATCAAAATGGACAAAAAGGGATATA 57.514 29.630 0.00 0.00 33.42 0.86
2552 3178 9.713684 TCAAAATGGACAAAAAGGGATATATCT 57.286 29.630 12.42 0.00 0.00 1.98
2558 3184 9.225682 TGGACAAAAAGGGATATATCTAGAACT 57.774 33.333 12.42 1.65 0.00 3.01
2611 3237 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
2612 3238 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
2613 3239 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
2614 3240 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
2615 3241 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
2616 3242 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
2617 3243 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
2618 3244 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
2619 3245 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2620 3246 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2686 3312 0.036164 TGTACGGTTTGCAGCTCCAT 59.964 50.000 0.00 0.00 0.00 3.41
2756 3382 8.412456 TCATGTTTGCTCATAAAAGAACAAGAA 58.588 29.630 0.00 0.00 31.69 2.52
2760 3394 5.713025 TGCTCATAAAAGAACAAGAATGCC 58.287 37.500 0.00 0.00 0.00 4.40
2783 3417 6.073548 GCCACAAGAACATATAGACATAGTGC 60.074 42.308 0.00 0.00 0.00 4.40
2816 3470 6.986817 TCTGTCCTTGCTTCAGCTATATTAAC 59.013 38.462 0.00 0.00 42.66 2.01
2961 3615 2.647802 AGGCAATTACACCCACCTACTT 59.352 45.455 0.00 0.00 0.00 2.24
2990 3644 6.045318 CCACTGTCATACACTTCTATTCTGG 58.955 44.000 0.00 0.00 0.00 3.86
2992 3646 6.533012 CACTGTCATACACTTCTATTCTGGTG 59.467 42.308 0.00 0.00 35.99 4.17
3003 3657 4.326826 TCTATTCTGGTGCTCAACTTTGG 58.673 43.478 0.00 0.00 0.00 3.28
3011 3665 3.251004 GGTGCTCAACTTTGGTACTTCAG 59.749 47.826 0.00 0.00 0.00 3.02
3047 3701 8.876275 ATGTGAATTATGGATTTGTACATTGC 57.124 30.769 0.00 0.00 30.07 3.56
3191 3845 1.002366 CTTGCAAAGTCGATCCGAGG 58.998 55.000 0.00 0.00 39.70 4.63
3242 3896 4.176271 GAGCCACACAAATGATTTTAGCC 58.824 43.478 0.00 0.00 0.00 3.93
3263 3917 6.234920 AGCCGCAATACATGGTATATTACAA 58.765 36.000 0.00 0.00 0.00 2.41
3268 3922 9.328721 CGCAATACATGGTATATTACAACAATG 57.671 33.333 0.00 0.00 0.00 2.82
3292 3946 9.998106 ATGTTTTGTTACTTGACTACATAGAGT 57.002 29.630 0.00 0.00 0.00 3.24
3293 3947 9.472361 TGTTTTGTTACTTGACTACATAGAGTC 57.528 33.333 0.00 0.00 45.19 3.36
3344 4001 3.688694 AAATGCAATGCCACAGACATT 57.311 38.095 1.53 0.00 38.25 2.71
3371 4028 4.736896 GACCACTGCCCGTCGTCC 62.737 72.222 0.00 0.00 28.75 4.79
3422 4079 4.131088 GAGACGCCGTCCCTCACC 62.131 72.222 14.60 0.00 32.18 4.02
3423 4080 4.680537 AGACGCCGTCCCTCACCT 62.681 66.667 14.60 0.00 32.18 4.00
3424 4081 4.131088 GACGCCGTCCCTCACCTC 62.131 72.222 5.81 0.00 0.00 3.85
3503 4176 1.747355 GGATCACCTTCAGCACATTGG 59.253 52.381 0.00 0.00 0.00 3.16
3597 4274 2.540101 GCTGCTACCAACTAATACAGCG 59.460 50.000 0.00 0.00 39.56 5.18
3628 4305 4.711949 AAGAGGGCAGCCACAGCG 62.712 66.667 15.19 0.00 46.67 5.18
3675 4355 3.162666 ACGAGGTTCTGTCCTGTGATTA 58.837 45.455 0.00 0.00 38.02 1.75
3712 4392 2.124996 CCCCCACCCAAGAGGAGA 59.875 66.667 0.00 0.00 39.89 3.71
3809 4495 3.449746 TTTGGGGGTCAGATTAACAGG 57.550 47.619 0.00 0.00 0.00 4.00
3908 4603 2.091283 ACCTTGGTGGGGGCTCTTT 61.091 57.895 0.00 0.00 41.11 2.52
4211 4908 6.674554 TGGGGATAGATAGATAGATGTGGA 57.325 41.667 0.00 0.00 0.00 4.02
4263 4960 1.023513 CAGAGCTACAGCCAAGGTGC 61.024 60.000 0.00 0.00 43.38 5.01
4264 4961 1.003355 GAGCTACAGCCAAGGTGCA 60.003 57.895 0.00 0.00 43.38 4.57
4422 5126 1.965754 GCCCTAGCTAGTGTGCTGCT 61.966 60.000 19.31 0.00 43.87 4.24
4465 5169 1.053835 TCCAGGCTGAACAGTGTCCA 61.054 55.000 17.94 0.00 0.00 4.02
4501 5205 1.399714 GGGCCCTTGCTATTTGTACC 58.600 55.000 17.04 0.00 37.74 3.34
4565 5273 9.388506 ACTACATTATCTTGAAAGAATGTGAGG 57.611 33.333 15.77 10.45 37.19 3.86
4599 5307 1.813862 GCCTTTGCGGGTATGCTATGA 60.814 52.381 0.00 0.00 35.36 2.15
4662 5370 8.213679 ACAGAGCTCAATATAATTGGTGTGTAT 58.786 33.333 17.77 0.00 32.41 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 7.700234 CACACACACACACAAACTAAATATTGT 59.300 33.333 0.00 0.00 40.24 2.71
20 21 7.700234 ACACACACACACACAAACTAAATATTG 59.300 33.333 0.00 0.00 0.00 1.90
21 22 7.700234 CACACACACACACACAAACTAAATATT 59.300 33.333 0.00 0.00 0.00 1.28
22 23 7.192913 CACACACACACACACAAACTAAATAT 58.807 34.615 0.00 0.00 0.00 1.28
24 25 5.398169 CACACACACACACACAAACTAAAT 58.602 37.500 0.00 0.00 0.00 1.40
27 28 2.744741 CCACACACACACACACAAACTA 59.255 45.455 0.00 0.00 0.00 2.24
28 29 1.539388 CCACACACACACACACAAACT 59.461 47.619 0.00 0.00 0.00 2.66
29 30 1.402194 CCCACACACACACACACAAAC 60.402 52.381 0.00 0.00 0.00 2.93
30 31 0.884514 CCCACACACACACACACAAA 59.115 50.000 0.00 0.00 0.00 2.83
31 32 0.250945 ACCCACACACACACACACAA 60.251 50.000 0.00 0.00 0.00 3.33
32 33 0.957888 CACCCACACACACACACACA 60.958 55.000 0.00 0.00 0.00 3.72
33 34 1.800032 CACCCACACACACACACAC 59.200 57.895 0.00 0.00 0.00 3.82
35 36 2.798009 GCACCCACACACACACAC 59.202 61.111 0.00 0.00 0.00 3.82
36 37 2.821810 CGCACCCACACACACACA 60.822 61.111 0.00 0.00 0.00 3.72
37 38 2.822255 ACGCACCCACACACACAC 60.822 61.111 0.00 0.00 0.00 3.82
38 39 2.821810 CACGCACCCACACACACA 60.822 61.111 0.00 0.00 0.00 3.72
39 40 4.250431 GCACGCACCCACACACAC 62.250 66.667 0.00 0.00 0.00 3.82
65 66 2.202008 GAGTTAACACACGCGCGC 60.202 61.111 32.58 23.91 0.00 6.86
67 68 0.856641 TTCTGAGTTAACACACGCGC 59.143 50.000 5.73 0.00 0.00 6.86
68 69 2.390938 TCTTCTGAGTTAACACACGCG 58.609 47.619 3.53 3.53 0.00 6.01
69 70 4.515432 GTTTCTTCTGAGTTAACACACGC 58.485 43.478 8.61 0.00 0.00 5.34
70 71 4.317839 CGGTTTCTTCTGAGTTAACACACG 60.318 45.833 8.61 1.59 0.00 4.49
72 73 5.013568 TCGGTTTCTTCTGAGTTAACACA 57.986 39.130 8.61 6.98 0.00 3.72
73 74 4.084485 GCTCGGTTTCTTCTGAGTTAACAC 60.084 45.833 8.61 1.71 41.39 3.32
75 76 4.308265 AGCTCGGTTTCTTCTGAGTTAAC 58.692 43.478 0.00 0.00 41.39 2.01
76 77 4.602340 AGCTCGGTTTCTTCTGAGTTAA 57.398 40.909 0.00 0.00 41.39 2.01
77 78 4.082354 GGTAGCTCGGTTTCTTCTGAGTTA 60.082 45.833 0.00 0.00 41.39 2.24
78 79 3.306156 GGTAGCTCGGTTTCTTCTGAGTT 60.306 47.826 0.00 0.00 41.39 3.01
80 81 2.494073 AGGTAGCTCGGTTTCTTCTGAG 59.506 50.000 0.00 0.00 42.02 3.35
81 82 2.526432 AGGTAGCTCGGTTTCTTCTGA 58.474 47.619 0.00 0.00 0.00 3.27
82 83 3.735514 GCTAGGTAGCTCGGTTTCTTCTG 60.736 52.174 0.00 0.00 45.62 3.02
83 84 2.427812 GCTAGGTAGCTCGGTTTCTTCT 59.572 50.000 0.00 0.00 45.62 2.85
84 85 2.795331 CGCTAGGTAGCTCGGTTTCTTC 60.795 54.545 0.00 0.00 46.85 2.87
85 86 1.134560 CGCTAGGTAGCTCGGTTTCTT 59.865 52.381 0.00 0.00 46.85 2.52
88 89 1.180029 TTCGCTAGGTAGCTCGGTTT 58.820 50.000 0.00 0.00 46.85 3.27
89 90 1.067212 CATTCGCTAGGTAGCTCGGTT 59.933 52.381 0.00 0.00 46.85 4.44
90 91 0.669077 CATTCGCTAGGTAGCTCGGT 59.331 55.000 0.00 0.00 46.85 4.69
91 92 0.669077 ACATTCGCTAGGTAGCTCGG 59.331 55.000 0.00 0.00 46.85 4.63
92 93 1.065701 ACACATTCGCTAGGTAGCTCG 59.934 52.381 0.00 0.00 46.85 5.03
93 94 2.873133 ACACATTCGCTAGGTAGCTC 57.127 50.000 0.00 0.00 46.85 4.09
94 95 4.159879 ACTTTACACATTCGCTAGGTAGCT 59.840 41.667 7.39 0.00 46.85 3.32
95 96 4.267928 CACTTTACACATTCGCTAGGTAGC 59.732 45.833 0.00 0.00 45.62 3.58
98 99 3.000727 GCACTTTACACATTCGCTAGGT 58.999 45.455 0.00 0.00 0.00 3.08
99 100 2.029244 CGCACTTTACACATTCGCTAGG 59.971 50.000 0.00 0.00 0.00 3.02
100 101 2.029244 CCGCACTTTACACATTCGCTAG 59.971 50.000 0.00 0.00 0.00 3.42
101 102 1.996898 CCGCACTTTACACATTCGCTA 59.003 47.619 0.00 0.00 0.00 4.26
102 103 0.796312 CCGCACTTTACACATTCGCT 59.204 50.000 0.00 0.00 0.00 4.93
103 104 0.179200 CCCGCACTTTACACATTCGC 60.179 55.000 0.00 0.00 0.00 4.70
104 105 1.127951 GACCCGCACTTTACACATTCG 59.872 52.381 0.00 0.00 0.00 3.34
105 106 1.127951 CGACCCGCACTTTACACATTC 59.872 52.381 0.00 0.00 0.00 2.67
109 110 0.509929 GAACGACCCGCACTTTACAC 59.490 55.000 0.00 0.00 0.00 2.90
110 111 0.940519 CGAACGACCCGCACTTTACA 60.941 55.000 0.00 0.00 0.00 2.41
111 112 0.664166 TCGAACGACCCGCACTTTAC 60.664 55.000 0.00 0.00 0.00 2.01
114 115 1.736645 CATCGAACGACCCGCACTT 60.737 57.895 0.00 0.00 0.00 3.16
116 117 2.546645 TACCATCGAACGACCCGCAC 62.547 60.000 0.00 0.00 0.00 5.34
118 119 1.143969 CTTACCATCGAACGACCCGC 61.144 60.000 0.00 0.00 0.00 6.13
120 121 1.475682 AGTCTTACCATCGAACGACCC 59.524 52.381 0.00 0.00 0.00 4.46
121 122 2.935481 AGTCTTACCATCGAACGACC 57.065 50.000 0.00 0.00 0.00 4.79
122 123 4.036027 TCCATAGTCTTACCATCGAACGAC 59.964 45.833 0.00 0.00 0.00 4.34
123 124 4.036027 GTCCATAGTCTTACCATCGAACGA 59.964 45.833 0.00 0.00 0.00 3.85
124 125 4.036498 AGTCCATAGTCTTACCATCGAACG 59.964 45.833 0.00 0.00 0.00 3.95
125 126 5.299782 AGAGTCCATAGTCTTACCATCGAAC 59.700 44.000 0.00 0.00 30.83 3.95
126 127 5.299531 CAGAGTCCATAGTCTTACCATCGAA 59.700 44.000 0.00 0.00 32.81 3.71
128 129 4.557695 GCAGAGTCCATAGTCTTACCATCG 60.558 50.000 0.00 0.00 32.81 3.84
129 130 4.262249 GGCAGAGTCCATAGTCTTACCATC 60.262 50.000 0.00 0.00 32.81 3.51
132 133 3.031736 TGGCAGAGTCCATAGTCTTACC 58.968 50.000 0.00 0.00 32.81 2.85
134 135 6.373759 TCTAATGGCAGAGTCCATAGTCTTA 58.626 40.000 0.00 0.00 45.64 2.10
135 136 5.211973 TCTAATGGCAGAGTCCATAGTCTT 58.788 41.667 0.00 0.00 45.64 3.01
137 138 5.736951 ATCTAATGGCAGAGTCCATAGTC 57.263 43.478 0.00 0.00 45.64 2.59
140 141 7.879677 CACAATAATCTAATGGCAGAGTCCATA 59.120 37.037 0.00 0.00 45.64 2.74
142 143 6.057533 CACAATAATCTAATGGCAGAGTCCA 58.942 40.000 0.00 0.00 40.97 4.02
144 145 7.559590 AACACAATAATCTAATGGCAGAGTC 57.440 36.000 0.00 0.00 0.00 3.36
145 146 7.944729 AAACACAATAATCTAATGGCAGAGT 57.055 32.000 0.00 0.00 0.00 3.24
187 525 8.991783 ATGAATAGGAATGTCATGATTCACTT 57.008 30.769 10.44 2.06 36.45 3.16
198 536 7.267128 TCCAAAAATGCATGAATAGGAATGTC 58.733 34.615 0.00 0.00 0.00 3.06
238 576 2.078849 TGCACTGATGACAACCGTAG 57.921 50.000 0.00 0.00 0.00 3.51
241 579 1.131126 GGAATGCACTGATGACAACCG 59.869 52.381 0.00 0.00 0.00 4.44
243 581 2.816087 AGTGGAATGCACTGATGACAAC 59.184 45.455 6.61 0.00 0.00 3.32
311 803 2.810400 GCCCTAAGCAGTGTCTGAAACA 60.810 50.000 0.02 0.00 42.97 2.83
312 804 1.807142 GCCCTAAGCAGTGTCTGAAAC 59.193 52.381 0.66 0.00 42.97 2.78
317 809 1.068121 AAAGGCCCTAAGCAGTGTCT 58.932 50.000 0.00 0.00 46.50 3.41
323 815 2.095604 AACCAAAAAGGCCCTAAGCA 57.904 45.000 0.00 0.00 46.50 3.91
330 822 4.617253 AATCCTACAAACCAAAAAGGCC 57.383 40.909 0.00 0.00 43.14 5.19
331 823 8.439993 TTTAAAATCCTACAAACCAAAAAGGC 57.560 30.769 0.00 0.00 43.14 4.35
337 829 9.810545 CTCTGTTTTTAAAATCCTACAAACCAA 57.189 29.630 0.55 0.00 0.00 3.67
338 830 9.191479 TCTCTGTTTTTAAAATCCTACAAACCA 57.809 29.630 0.55 0.00 0.00 3.67
370 862 4.202631 TGCCACTCCAACCCTATACTTTTT 60.203 41.667 0.00 0.00 0.00 1.94
371 863 3.332485 TGCCACTCCAACCCTATACTTTT 59.668 43.478 0.00 0.00 0.00 2.27
372 864 2.916934 TGCCACTCCAACCCTATACTTT 59.083 45.455 0.00 0.00 0.00 2.66
373 865 2.557869 TGCCACTCCAACCCTATACTT 58.442 47.619 0.00 0.00 0.00 2.24
374 866 2.263895 TGCCACTCCAACCCTATACT 57.736 50.000 0.00 0.00 0.00 2.12
375 867 2.851195 CATGCCACTCCAACCCTATAC 58.149 52.381 0.00 0.00 0.00 1.47
376 868 1.142870 GCATGCCACTCCAACCCTATA 59.857 52.381 6.36 0.00 0.00 1.31
377 869 0.106519 GCATGCCACTCCAACCCTAT 60.107 55.000 6.36 0.00 0.00 2.57
378 870 1.207488 AGCATGCCACTCCAACCCTA 61.207 55.000 15.66 0.00 0.00 3.53
379 871 2.036256 GCATGCCACTCCAACCCT 59.964 61.111 6.36 0.00 0.00 4.34
380 872 0.323360 TAAGCATGCCACTCCAACCC 60.323 55.000 15.66 0.00 0.00 4.11
381 873 1.767759 ATAAGCATGCCACTCCAACC 58.232 50.000 15.66 0.00 0.00 3.77
382 874 3.874392 AAATAAGCATGCCACTCCAAC 57.126 42.857 15.66 0.00 0.00 3.77
383 875 5.991933 TTTAAATAAGCATGCCACTCCAA 57.008 34.783 15.66 0.00 0.00 3.53
384 876 6.380846 AGAATTTAAATAAGCATGCCACTCCA 59.619 34.615 15.66 0.00 0.00 3.86
385 877 6.809869 AGAATTTAAATAAGCATGCCACTCC 58.190 36.000 15.66 0.00 0.00 3.85
388 880 9.846248 CCTATAGAATTTAAATAAGCATGCCAC 57.154 33.333 15.66 0.00 0.00 5.01
389 881 9.806448 TCCTATAGAATTTAAATAAGCATGCCA 57.194 29.630 15.66 2.46 0.00 4.92
403 895 9.911788 ACACTCATTGTTGATCCTATAGAATTT 57.088 29.630 0.00 0.00 33.09 1.82
419 911 5.255687 TCTATGCCATCAAACACTCATTGT 58.744 37.500 0.00 0.00 41.74 2.71
420 912 5.823209 TCTATGCCATCAAACACTCATTG 57.177 39.130 0.00 0.00 0.00 2.82
421 913 6.839124 TTTCTATGCCATCAAACACTCATT 57.161 33.333 0.00 0.00 0.00 2.57
422 914 6.839124 TTTTCTATGCCATCAAACACTCAT 57.161 33.333 0.00 0.00 0.00 2.90
423 915 6.647334 TTTTTCTATGCCATCAAACACTCA 57.353 33.333 0.00 0.00 0.00 3.41
462 954 8.664669 AATATAACATCCACTCCAACCTTTTT 57.335 30.769 0.00 0.00 0.00 1.94
463 955 8.664669 AAATATAACATCCACTCCAACCTTTT 57.335 30.769 0.00 0.00 0.00 2.27
464 956 7.342026 GGAAATATAACATCCACTCCAACCTTT 59.658 37.037 0.00 0.00 33.30 3.11
465 957 6.833933 GGAAATATAACATCCACTCCAACCTT 59.166 38.462 0.00 0.00 33.30 3.50
466 958 6.160459 AGGAAATATAACATCCACTCCAACCT 59.840 38.462 5.06 0.00 35.62 3.50
467 959 6.365520 AGGAAATATAACATCCACTCCAACC 58.634 40.000 5.06 0.00 35.62 3.77
495 987 9.747898 TCCTATGGTATCTTTTGTACAACATTT 57.252 29.630 8.07 0.00 0.00 2.32
496 988 9.747898 TTCCTATGGTATCTTTTGTACAACATT 57.252 29.630 8.07 0.00 0.00 2.71
497 989 9.747898 TTTCCTATGGTATCTTTTGTACAACAT 57.252 29.630 8.07 9.07 0.00 2.71
498 990 9.575868 TTTTCCTATGGTATCTTTTGTACAACA 57.424 29.630 8.07 0.13 0.00 3.33
509 1001 9.813826 CCCATAGAAATTTTTCCTATGGTATCT 57.186 33.333 26.93 7.73 41.12 1.98
510 1002 9.807921 TCCCATAGAAATTTTTCCTATGGTATC 57.192 33.333 26.93 1.67 41.12 2.24
513 1005 9.506042 AAATCCCATAGAAATTTTTCCTATGGT 57.494 29.630 26.93 16.07 41.12 3.55
514 1006 9.987272 GAAATCCCATAGAAATTTTTCCTATGG 57.013 33.333 24.61 24.61 41.61 2.74
535 1027 7.040132 GGTCCTTGGATTCATAGGATTGAAATC 60.040 40.741 7.83 0.00 40.05 2.17
536 1028 6.779539 GGTCCTTGGATTCATAGGATTGAAAT 59.220 38.462 7.83 0.00 40.05 2.17
537 1029 6.129179 GGTCCTTGGATTCATAGGATTGAAA 58.871 40.000 7.83 0.00 40.05 2.69
538 1030 5.193527 TGGTCCTTGGATTCATAGGATTGAA 59.806 40.000 7.83 0.00 40.05 2.69
539 1031 4.726317 TGGTCCTTGGATTCATAGGATTGA 59.274 41.667 7.83 0.00 40.05 2.57
540 1032 5.052693 TGGTCCTTGGATTCATAGGATTG 57.947 43.478 7.83 0.00 40.05 2.67
541 1033 4.446889 GCTGGTCCTTGGATTCATAGGATT 60.447 45.833 7.83 0.00 40.05 3.01
542 1034 3.073650 GCTGGTCCTTGGATTCATAGGAT 59.926 47.826 7.83 0.00 40.05 3.24
543 1035 2.439507 GCTGGTCCTTGGATTCATAGGA 59.560 50.000 1.88 1.88 35.75 2.94
544 1036 2.173356 TGCTGGTCCTTGGATTCATAGG 59.827 50.000 0.00 0.00 0.00 2.57
545 1037 3.565764 TGCTGGTCCTTGGATTCATAG 57.434 47.619 0.00 0.00 0.00 2.23
546 1038 4.042062 CCTATGCTGGTCCTTGGATTCATA 59.958 45.833 0.00 0.00 0.00 2.15
547 1039 3.181436 CCTATGCTGGTCCTTGGATTCAT 60.181 47.826 0.00 0.00 0.00 2.57
548 1040 2.173356 CCTATGCTGGTCCTTGGATTCA 59.827 50.000 0.00 0.00 0.00 2.57
549 1041 2.439507 TCCTATGCTGGTCCTTGGATTC 59.560 50.000 0.00 0.00 0.00 2.52
550 1042 2.492025 TCCTATGCTGGTCCTTGGATT 58.508 47.619 0.00 0.00 0.00 3.01
551 1043 2.196742 TCCTATGCTGGTCCTTGGAT 57.803 50.000 0.00 0.00 0.00 3.41
552 1044 1.965414 TTCCTATGCTGGTCCTTGGA 58.035 50.000 0.00 0.00 0.00 3.53
553 1045 2.806945 TTTCCTATGCTGGTCCTTGG 57.193 50.000 0.00 0.00 0.00 3.61
554 1046 4.098501 GGATTTTTCCTATGCTGGTCCTTG 59.901 45.833 0.00 0.00 0.00 3.61
555 1047 4.017130 AGGATTTTTCCTATGCTGGTCCTT 60.017 41.667 0.00 0.00 38.58 3.36
556 1048 3.529319 AGGATTTTTCCTATGCTGGTCCT 59.471 43.478 0.00 0.00 38.58 3.85
557 1049 3.903467 AGGATTTTTCCTATGCTGGTCC 58.097 45.455 0.00 0.00 38.58 4.46
558 1050 5.532779 CCTTAGGATTTTTCCTATGCTGGTC 59.467 44.000 0.00 0.00 41.55 4.02
559 1051 5.193728 TCCTTAGGATTTTTCCTATGCTGGT 59.806 40.000 0.00 0.00 41.55 4.00
560 1052 5.694995 TCCTTAGGATTTTTCCTATGCTGG 58.305 41.667 0.00 4.34 41.55 4.85
612 1104 3.777087 TGGGCTCCTTTCATTCAAATGA 58.223 40.909 1.30 1.30 43.28 2.57
613 1105 4.748277 ATGGGCTCCTTTCATTCAAATG 57.252 40.909 0.00 0.00 37.75 2.32
614 1106 5.163374 GCTAATGGGCTCCTTTCATTCAAAT 60.163 40.000 0.00 0.00 33.72 2.32
615 1107 4.160252 GCTAATGGGCTCCTTTCATTCAAA 59.840 41.667 0.00 0.00 33.72 2.69
616 1108 3.701040 GCTAATGGGCTCCTTTCATTCAA 59.299 43.478 0.00 0.00 33.72 2.69
617 1109 3.290710 GCTAATGGGCTCCTTTCATTCA 58.709 45.455 0.00 0.00 33.72 2.57
618 1110 3.290710 TGCTAATGGGCTCCTTTCATTC 58.709 45.455 0.00 0.00 33.72 2.67
619 1111 3.386932 TGCTAATGGGCTCCTTTCATT 57.613 42.857 0.00 0.00 35.57 2.57
620 1112 3.228453 CATGCTAATGGGCTCCTTTCAT 58.772 45.455 0.00 0.00 0.00 2.57
621 1113 2.658285 CATGCTAATGGGCTCCTTTCA 58.342 47.619 0.00 0.00 0.00 2.69
622 1114 1.339291 GCATGCTAATGGGCTCCTTTC 59.661 52.381 11.37 0.00 34.09 2.62
623 1115 1.342275 TGCATGCTAATGGGCTCCTTT 60.342 47.619 20.33 0.00 34.09 3.11
624 1116 0.259647 TGCATGCTAATGGGCTCCTT 59.740 50.000 20.33 0.00 34.09 3.36
625 1117 0.481567 ATGCATGCTAATGGGCTCCT 59.518 50.000 20.33 0.00 34.09 3.69
626 1118 0.601558 CATGCATGCTAATGGGCTCC 59.398 55.000 20.33 0.00 34.09 4.70
627 1119 0.601558 CCATGCATGCTAATGGGCTC 59.398 55.000 23.32 0.00 39.82 4.70
628 1120 1.469335 GCCATGCATGCTAATGGGCT 61.469 55.000 28.80 1.26 43.10 5.19
629 1121 1.005394 GCCATGCATGCTAATGGGC 60.005 57.895 28.80 23.39 43.10 5.36
630 1122 0.032952 GTGCCATGCATGCTAATGGG 59.967 55.000 28.80 19.12 43.10 4.00
631 1123 0.318360 CGTGCCATGCATGCTAATGG 60.318 55.000 25.60 25.60 45.25 3.16
632 1124 3.173247 CGTGCCATGCATGCTAATG 57.827 52.632 21.69 14.70 41.91 1.90
654 1146 8.966069 AGTAGGGAATGATTAGTAAAAAGAGC 57.034 34.615 0.00 0.00 0.00 4.09
721 1217 8.936864 GCTTTTTATCCTCTGCGTATATATGTT 58.063 33.333 3.92 0.00 0.00 2.71
722 1218 8.314751 AGCTTTTTATCCTCTGCGTATATATGT 58.685 33.333 3.92 0.00 0.00 2.29
723 1219 8.709386 AGCTTTTTATCCTCTGCGTATATATG 57.291 34.615 0.00 0.00 0.00 1.78
724 1220 8.531982 TGAGCTTTTTATCCTCTGCGTATATAT 58.468 33.333 0.00 0.00 0.00 0.86
725 1221 7.892609 TGAGCTTTTTATCCTCTGCGTATATA 58.107 34.615 0.00 0.00 0.00 0.86
735 1231 7.948278 ATGTACGTATGAGCTTTTTATCCTC 57.052 36.000 0.00 0.00 0.00 3.71
805 1315 0.618680 AGGATGGCCAGCTAGTGTGA 60.619 55.000 22.39 0.00 36.29 3.58
807 1317 0.911525 ACAGGATGGCCAGCTAGTGT 60.912 55.000 22.39 18.32 43.62 3.55
809 1319 2.109229 ATACAGGATGGCCAGCTAGT 57.891 50.000 22.39 20.71 43.62 2.57
811 1321 7.235606 GGATATATAATACAGGATGGCCAGCTA 59.764 40.741 22.39 5.86 43.62 3.32
813 1323 6.234177 GGATATATAATACAGGATGGCCAGC 58.766 44.000 14.08 14.08 43.62 4.85
814 1324 6.240002 GGGGATATATAATACAGGATGGCCAG 60.240 46.154 13.05 0.00 43.62 4.85
815 1325 5.610982 GGGGATATATAATACAGGATGGCCA 59.389 44.000 8.56 8.56 43.62 5.36
816 1326 5.852250 AGGGGATATATAATACAGGATGGCC 59.148 44.000 0.00 0.00 43.62 5.36
1044 1584 1.000233 CGGCGTCGACGAAGAAGAAA 61.000 55.000 39.74 0.00 43.02 2.52
1468 2066 3.691342 CAGGGTCAAGGACGGCGA 61.691 66.667 16.62 0.00 32.65 5.54
1470 2068 4.329545 TGCAGGGTCAAGGACGGC 62.330 66.667 0.00 0.00 32.65 5.68
1471 2069 2.358737 GTGCAGGGTCAAGGACGG 60.359 66.667 0.00 0.00 32.65 4.79
1478 2076 0.032952 GTTAGTGACGTGCAGGGTCA 59.967 55.000 14.73 14.73 41.82 4.02
1480 2078 1.370064 GGTTAGTGACGTGCAGGGT 59.630 57.895 11.67 0.00 0.00 4.34
1484 2082 2.731721 CGCGGTTAGTGACGTGCA 60.732 61.111 0.00 0.00 33.69 4.57
1494 2092 0.793861 GAGATTTGTGTGCGCGGTTA 59.206 50.000 8.83 0.00 0.00 2.85
1499 2097 0.523072 ATGGTGAGATTTGTGTGCGC 59.477 50.000 0.00 0.00 0.00 6.09
1508 2108 2.355513 GGCTGTCTGACATGGTGAGATT 60.356 50.000 11.45 0.00 27.48 2.40
1527 2127 1.881252 CCCAGCGTGTACGTATGGC 60.881 63.158 18.92 6.93 42.74 4.40
1528 2128 1.881252 GCCCAGCGTGTACGTATGG 60.881 63.158 17.96 17.96 43.28 2.74
1529 2129 1.153726 TGCCCAGCGTGTACGTATG 60.154 57.895 0.00 5.68 42.22 2.39
1530 2130 1.153706 GTGCCCAGCGTGTACGTAT 60.154 57.895 0.00 0.00 42.22 3.06
1531 2131 2.259204 GTGCCCAGCGTGTACGTA 59.741 61.111 6.27 0.00 42.22 3.57
1532 2132 4.675029 GGTGCCCAGCGTGTACGT 62.675 66.667 6.27 0.00 42.22 3.57
1533 2133 3.950794 ATGGTGCCCAGCGTGTACG 62.951 63.158 0.00 0.00 36.75 3.67
1534 2134 2.046314 ATGGTGCCCAGCGTGTAC 60.046 61.111 0.41 0.00 36.75 2.90
1535 2135 2.046411 CATGGTGCCCAGCGTGTA 60.046 61.111 10.63 0.00 40.04 2.90
1538 2138 3.952508 TGACATGGTGCCCAGCGT 61.953 61.111 0.00 0.49 36.75 5.07
1539 2139 3.434319 GTGACATGGTGCCCAGCG 61.434 66.667 0.00 0.00 36.75 5.18
1540 2140 3.434319 CGTGACATGGTGCCCAGC 61.434 66.667 0.00 0.00 36.75 4.85
1541 2141 3.434319 GCGTGACATGGTGCCCAG 61.434 66.667 0.00 0.00 36.75 4.45
1546 2146 2.077801 GATACGCGCGTGACATGGTG 62.078 60.000 42.78 7.98 0.00 4.17
1581 2181 2.766263 ACCATGCCGAAAGATACAGAGA 59.234 45.455 0.00 0.00 0.00 3.10
1633 2233 9.518906 TCCAAAACTTTTCTTTTTATACGGAAC 57.481 29.630 0.00 0.00 0.00 3.62
1685 2285 2.288763 GGCCGGTTTGTTGAATTGATGT 60.289 45.455 1.90 0.00 0.00 3.06
1692 2292 2.287668 CGTAATTGGCCGGTTTGTTGAA 60.288 45.455 1.90 0.00 0.00 2.69
1693 2293 1.267261 CGTAATTGGCCGGTTTGTTGA 59.733 47.619 1.90 0.00 0.00 3.18
1749 2349 0.112412 AAAGAAATCCCACACGCCCT 59.888 50.000 0.00 0.00 0.00 5.19
1753 2353 2.791158 GCGCATAAAGAAATCCCACACG 60.791 50.000 0.30 0.00 0.00 4.49
1754 2354 2.423538 AGCGCATAAAGAAATCCCACAC 59.576 45.455 11.47 0.00 0.00 3.82
1755 2355 2.682856 GAGCGCATAAAGAAATCCCACA 59.317 45.455 11.47 0.00 0.00 4.17
1756 2356 2.682856 TGAGCGCATAAAGAAATCCCAC 59.317 45.455 11.47 0.00 0.00 4.61
1757 2357 2.997980 TGAGCGCATAAAGAAATCCCA 58.002 42.857 11.47 0.00 0.00 4.37
1758 2358 3.627577 TCTTGAGCGCATAAAGAAATCCC 59.372 43.478 11.47 0.00 0.00 3.85
1765 2365 3.921969 CTCTGTCTTGAGCGCATAAAG 57.078 47.619 11.47 10.34 0.00 1.85
1837 2441 1.271856 TGATAAGGCCTGTTCCACGA 58.728 50.000 5.69 0.00 0.00 4.35
1838 2442 2.332063 ATGATAAGGCCTGTTCCACG 57.668 50.000 5.69 0.00 0.00 4.94
1839 2443 3.129287 CACAATGATAAGGCCTGTTCCAC 59.871 47.826 5.69 0.00 0.00 4.02
1841 2445 2.099756 GCACAATGATAAGGCCTGTTCC 59.900 50.000 5.69 0.00 0.00 3.62
1892 2505 6.548622 AGGCCATATACTTACTTAACACGAGA 59.451 38.462 5.01 0.00 0.00 4.04
1943 2556 5.230323 AGATAGATACCTGACGCTAGTGA 57.770 43.478 10.99 0.00 0.00 3.41
1948 2561 5.492855 AGAGTAGATAGATACCTGACGCT 57.507 43.478 0.00 0.00 0.00 5.07
1966 2579 3.325135 CACTTTGGAACTGGGAGTAGAGT 59.675 47.826 0.00 0.00 0.00 3.24
1971 2584 2.104963 GAGTCACTTTGGAACTGGGAGT 59.895 50.000 0.00 0.00 0.00 3.85
1972 2585 2.370189 AGAGTCACTTTGGAACTGGGAG 59.630 50.000 0.00 0.00 0.00 4.30
1973 2586 2.104792 CAGAGTCACTTTGGAACTGGGA 59.895 50.000 0.00 0.00 0.00 4.37
1976 2589 2.564771 TGCAGAGTCACTTTGGAACTG 58.435 47.619 0.00 0.00 0.00 3.16
1977 2590 3.281727 TTGCAGAGTCACTTTGGAACT 57.718 42.857 0.00 0.00 0.00 3.01
1978 2591 3.854784 GCATTGCAGAGTCACTTTGGAAC 60.855 47.826 4.28 0.00 30.01 3.62
1979 2592 2.294233 GCATTGCAGAGTCACTTTGGAA 59.706 45.455 4.68 4.68 31.56 3.53
1980 2593 1.881973 GCATTGCAGAGTCACTTTGGA 59.118 47.619 3.15 0.00 0.00 3.53
1981 2594 1.610038 TGCATTGCAGAGTCACTTTGG 59.390 47.619 7.38 0.00 33.32 3.28
1982 2595 2.658285 GTGCATTGCAGAGTCACTTTG 58.342 47.619 12.53 0.00 40.08 2.77
1983 2596 1.265095 CGTGCATTGCAGAGTCACTTT 59.735 47.619 12.53 0.00 40.08 2.66
1984 2597 0.870393 CGTGCATTGCAGAGTCACTT 59.130 50.000 12.53 0.00 40.08 3.16
2011 2624 3.883744 GACTGTCACCACCCCAGCG 62.884 68.421 2.24 0.00 0.00 5.18
2012 2625 2.032681 GACTGTCACCACCCCAGC 59.967 66.667 2.24 0.00 0.00 4.85
2013 2626 1.372683 CTGACTGTCACCACCCCAG 59.627 63.158 6.36 0.00 0.00 4.45
2028 2641 7.553334 CCAGGTAAATAAACTACTACTGCTGA 58.447 38.462 0.00 0.00 0.00 4.26
2051 2675 2.158971 GCTTGTTCTTTTCCTTTGGCCA 60.159 45.455 0.00 0.00 0.00 5.36
2093 2717 0.598158 AACAATGCTGCTTTGCACCG 60.598 50.000 23.26 4.94 46.33 4.94
2095 2719 3.310501 AGAAAAACAATGCTGCTTTGCAC 59.689 39.130 23.26 12.61 46.33 4.57
2180 2806 9.244292 ACACTGAACTCTACTATCTGACATAAA 57.756 33.333 0.00 0.00 0.00 1.40
2187 2813 4.950475 TCCCACACTGAACTCTACTATCTG 59.050 45.833 0.00 0.00 0.00 2.90
2193 2819 1.896465 AGCTCCCACACTGAACTCTAC 59.104 52.381 0.00 0.00 0.00 2.59
2194 2820 2.310779 AGCTCCCACACTGAACTCTA 57.689 50.000 0.00 0.00 0.00 2.43
2195 2821 1.896465 GTAGCTCCCACACTGAACTCT 59.104 52.381 0.00 0.00 0.00 3.24
2266 2892 5.084519 AGACCAGTAGTATCACTTGGAACA 58.915 41.667 4.45 0.00 0.00 3.18
2285 2911 3.054361 ACCAATTCACCATCCAGTAGACC 60.054 47.826 0.00 0.00 0.00 3.85
2286 2912 3.941483 CACCAATTCACCATCCAGTAGAC 59.059 47.826 0.00 0.00 0.00 2.59
2288 2914 4.220693 TCACCAATTCACCATCCAGTAG 57.779 45.455 0.00 0.00 0.00 2.57
2289 2915 4.227073 TCATCACCAATTCACCATCCAGTA 59.773 41.667 0.00 0.00 0.00 2.74
2291 2917 3.623703 TCATCACCAATTCACCATCCAG 58.376 45.455 0.00 0.00 0.00 3.86
2292 2918 3.735720 TCATCACCAATTCACCATCCA 57.264 42.857 0.00 0.00 0.00 3.41
2293 2919 5.336213 GCATATCATCACCAATTCACCATCC 60.336 44.000 0.00 0.00 0.00 3.51
2294 2920 5.475909 AGCATATCATCACCAATTCACCATC 59.524 40.000 0.00 0.00 0.00 3.51
2295 2921 5.391256 AGCATATCATCACCAATTCACCAT 58.609 37.500 0.00 0.00 0.00 3.55
2296 2922 4.795469 AGCATATCATCACCAATTCACCA 58.205 39.130 0.00 0.00 0.00 4.17
2297 2923 5.106396 GCTAGCATATCATCACCAATTCACC 60.106 44.000 10.63 0.00 0.00 4.02
2298 2924 5.704515 AGCTAGCATATCATCACCAATTCAC 59.295 40.000 18.83 0.00 0.00 3.18
2299 2925 5.704053 CAGCTAGCATATCATCACCAATTCA 59.296 40.000 18.83 0.00 0.00 2.57
2300 2926 5.936372 TCAGCTAGCATATCATCACCAATTC 59.064 40.000 18.83 0.00 0.00 2.17
2301 2927 5.872963 TCAGCTAGCATATCATCACCAATT 58.127 37.500 18.83 0.00 0.00 2.32
2302 2928 5.494390 TCAGCTAGCATATCATCACCAAT 57.506 39.130 18.83 0.00 0.00 3.16
2303 2929 4.961438 TCAGCTAGCATATCATCACCAA 57.039 40.909 18.83 0.00 0.00 3.67
2393 3019 7.934457 AGTGATATTATAAGCCTGCTTGTTTG 58.066 34.615 14.42 0.00 37.47 2.93
2489 3115 5.763698 TCAGACGGAGGAAGTACTACATATG 59.236 44.000 0.00 0.00 0.00 1.78
2490 3116 5.938279 TCAGACGGAGGAAGTACTACATAT 58.062 41.667 0.00 0.00 0.00 1.78
2496 3122 5.715753 AGTATTTTCAGACGGAGGAAGTACT 59.284 40.000 0.00 0.00 0.00 2.73
2497 3123 5.963594 AGTATTTTCAGACGGAGGAAGTAC 58.036 41.667 0.00 0.00 0.00 2.73
2498 3124 6.014840 ACAAGTATTTTCAGACGGAGGAAGTA 60.015 38.462 0.00 0.00 0.00 2.24
2499 3125 5.221661 ACAAGTATTTTCAGACGGAGGAAGT 60.222 40.000 0.00 0.00 0.00 3.01
2500 3126 5.238583 ACAAGTATTTTCAGACGGAGGAAG 58.761 41.667 0.00 0.00 0.00 3.46
2501 3127 5.221561 TGACAAGTATTTTCAGACGGAGGAA 60.222 40.000 0.00 0.00 0.00 3.36
2502 3128 4.282449 TGACAAGTATTTTCAGACGGAGGA 59.718 41.667 0.00 0.00 0.00 3.71
2503 3129 4.566004 TGACAAGTATTTTCAGACGGAGG 58.434 43.478 0.00 0.00 0.00 4.30
2504 3130 5.869344 TGATGACAAGTATTTTCAGACGGAG 59.131 40.000 0.00 0.00 0.00 4.63
2505 3131 5.789521 TGATGACAAGTATTTTCAGACGGA 58.210 37.500 0.00 0.00 0.00 4.69
2506 3132 6.480524 TTGATGACAAGTATTTTCAGACGG 57.519 37.500 0.00 0.00 0.00 4.79
2507 3133 8.843733 CATTTTGATGACAAGTATTTTCAGACG 58.156 33.333 0.00 0.00 37.32 4.18
2508 3134 9.132521 CCATTTTGATGACAAGTATTTTCAGAC 57.867 33.333 0.00 0.00 37.32 3.51
2509 3135 9.076781 TCCATTTTGATGACAAGTATTTTCAGA 57.923 29.630 0.00 0.00 37.32 3.27
2510 3136 9.132521 GTCCATTTTGATGACAAGTATTTTCAG 57.867 33.333 0.00 0.00 37.32 3.02
2511 3137 8.637099 TGTCCATTTTGATGACAAGTATTTTCA 58.363 29.630 0.00 0.00 37.32 2.69
2512 3138 9.474920 TTGTCCATTTTGATGACAAGTATTTTC 57.525 29.630 0.00 0.00 37.32 2.29
2513 3139 9.829507 TTTGTCCATTTTGATGACAAGTATTTT 57.170 25.926 0.00 0.00 37.13 1.82
2514 3140 9.829507 TTTTGTCCATTTTGATGACAAGTATTT 57.170 25.926 0.00 0.00 37.13 1.40
2515 3141 9.829507 TTTTTGTCCATTTTGATGACAAGTATT 57.170 25.926 0.00 0.00 37.13 1.89
2516 3142 9.480053 CTTTTTGTCCATTTTGATGACAAGTAT 57.520 29.630 0.00 0.00 37.13 2.12
2517 3143 7.925483 CCTTTTTGTCCATTTTGATGACAAGTA 59.075 33.333 0.00 0.00 37.13 2.24
2518 3144 6.762661 CCTTTTTGTCCATTTTGATGACAAGT 59.237 34.615 0.00 0.00 37.13 3.16
2519 3145 6.203338 CCCTTTTTGTCCATTTTGATGACAAG 59.797 38.462 0.00 0.00 37.13 3.16
2520 3146 6.054295 CCCTTTTTGTCCATTTTGATGACAA 58.946 36.000 0.00 0.00 34.47 3.18
2521 3147 5.365025 TCCCTTTTTGTCCATTTTGATGACA 59.635 36.000 0.00 0.00 0.00 3.58
2522 3148 5.852827 TCCCTTTTTGTCCATTTTGATGAC 58.147 37.500 0.00 0.00 0.00 3.06
2523 3149 6.684897 ATCCCTTTTTGTCCATTTTGATGA 57.315 33.333 0.00 0.00 0.00 2.92
2526 3152 9.713684 AGATATATCCCTTTTTGTCCATTTTGA 57.286 29.630 9.18 0.00 0.00 2.69
2532 3158 9.225682 AGTTCTAGATATATCCCTTTTTGTCCA 57.774 33.333 9.18 0.00 0.00 4.02
2586 3212 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
2587 3213 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
2588 3214 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
2589 3215 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
2590 3216 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
2591 3217 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
2592 3218 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
2593 3219 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
2594 3220 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
2595 3221 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
2596 3222 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
2597 3223 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2598 3224 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2599 3225 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2600 3226 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2601 3227 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2602 3228 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2603 3229 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2604 3230 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2605 3231 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2606 3232 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
2607 3233 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
2608 3234 1.070604 ATATACTCCCTCCGTCCGGA 58.929 55.000 0.00 0.00 42.90 5.14
2609 3235 1.174783 CATATACTCCCTCCGTCCGG 58.825 60.000 0.00 0.00 0.00 5.14
2610 3236 1.174783 CCATATACTCCCTCCGTCCG 58.825 60.000 0.00 0.00 0.00 4.79
2611 3237 2.305858 ACCATATACTCCCTCCGTCC 57.694 55.000 0.00 0.00 0.00 4.79
2612 3238 4.031636 AGTACCATATACTCCCTCCGTC 57.968 50.000 0.00 0.00 0.00 4.79
2613 3239 5.507637 CATAGTACCATATACTCCCTCCGT 58.492 45.833 0.00 0.00 0.00 4.69
2614 3240 4.338682 GCATAGTACCATATACTCCCTCCG 59.661 50.000 0.00 0.00 0.00 4.63
2615 3241 5.269991 TGCATAGTACCATATACTCCCTCC 58.730 45.833 0.00 0.00 0.00 4.30
2616 3242 6.836527 AGATGCATAGTACCATATACTCCCTC 59.163 42.308 0.00 0.00 0.00 4.30
2617 3243 6.746894 AGATGCATAGTACCATATACTCCCT 58.253 40.000 0.00 0.00 0.00 4.20
2618 3244 7.780745 AGTAGATGCATAGTACCATATACTCCC 59.219 40.741 0.00 0.00 40.50 4.30
2619 3245 8.754991 AGTAGATGCATAGTACCATATACTCC 57.245 38.462 0.00 0.00 40.50 3.85
2756 3382 7.658982 CACTATGTCTATATGTTCTTGTGGCAT 59.341 37.037 0.00 0.00 0.00 4.40
2760 3394 9.186323 GTAGCACTATGTCTATATGTTCTTGTG 57.814 37.037 0.00 0.00 0.00 3.33
2783 3417 5.236047 GCTGAAGCAAGGACAGATAATGTAG 59.764 44.000 0.00 0.00 41.11 2.74
2816 3470 3.836949 AGAACACAAACAAACACTGCAG 58.163 40.909 13.48 13.48 0.00 4.41
2961 3615 5.745312 AGAAGTGTATGACAGTGGAATCA 57.255 39.130 0.00 0.00 30.99 2.57
2990 3644 3.304057 GCTGAAGTACCAAAGTTGAGCAC 60.304 47.826 0.08 0.00 44.49 4.40
2992 3646 2.878406 TGCTGAAGTACCAAAGTTGAGC 59.122 45.455 0.00 0.00 45.10 4.26
3003 3657 5.926542 TCACATTACAACTCTGCTGAAGTAC 59.073 40.000 0.00 0.00 0.00 2.73
3011 3665 7.320443 TCCATAATTCACATTACAACTCTGC 57.680 36.000 0.00 0.00 0.00 4.26
3047 3701 5.781210 TGTATCTTGTGCTCTCTATCTGG 57.219 43.478 0.00 0.00 0.00 3.86
3185 3839 4.414956 ATGTGCCTCCCCCTCGGA 62.415 66.667 0.00 0.00 38.83 4.55
3191 3845 0.398318 GGTATCTCATGTGCCTCCCC 59.602 60.000 0.00 0.00 0.00 4.81
3242 3896 9.328721 CATTGTTGTAATATACCATGTATTGCG 57.671 33.333 0.00 0.00 29.95 4.85
3268 3922 8.636843 CGACTCTATGTAGTCAAGTAACAAAAC 58.363 37.037 9.23 0.00 45.13 2.43
3276 3930 4.217767 TGCAACGACTCTATGTAGTCAAGT 59.782 41.667 9.23 0.00 45.13 3.16
3277 3931 4.733850 TGCAACGACTCTATGTAGTCAAG 58.266 43.478 9.23 1.28 45.13 3.02
3289 3943 0.385974 GTGCCATGTTGCAACGACTC 60.386 55.000 23.79 13.57 44.11 3.36
3292 3946 1.598882 TTAGTGCCATGTTGCAACGA 58.401 45.000 23.79 13.71 44.11 3.85
3293 3947 2.252747 CATTAGTGCCATGTTGCAACG 58.747 47.619 23.79 11.47 44.11 4.10
3299 3953 4.440525 GCAGCATTACATTAGTGCCATGTT 60.441 41.667 0.00 0.00 41.72 2.71
3344 4001 0.108585 GGCAGTGGTCCAAGAACTCA 59.891 55.000 0.00 0.00 0.00 3.41
3422 4079 0.741221 GCCTAGGGTTGAGCAACGAG 60.741 60.000 11.72 4.88 42.02 4.18
3423 4080 1.192146 AGCCTAGGGTTGAGCAACGA 61.192 55.000 7.93 0.00 42.02 3.85
3424 4081 0.321653 AAGCCTAGGGTTGAGCAACG 60.322 55.000 25.15 0.00 42.02 4.10
3425 4082 3.652581 AAGCCTAGGGTTGAGCAAC 57.347 52.632 25.15 4.81 40.45 4.17
3480 4137 1.351076 TGTGCTGAAGGTGATCCTCA 58.649 50.000 0.00 0.00 44.35 3.86
3481 4138 2.681848 CAATGTGCTGAAGGTGATCCTC 59.318 50.000 0.00 0.00 44.35 3.71
3503 4176 7.596248 ACAACTTGATCACAATTCATAACTTGC 59.404 33.333 0.00 0.00 35.37 4.01
3543 4220 5.536538 CCTTCCTATTATCAGGGGAAAAAGC 59.463 44.000 0.00 0.00 37.39 3.51
3592 4269 4.954970 CAACCCACCAGCCGCTGT 62.955 66.667 18.98 4.76 0.00 4.40
3597 4274 2.203480 TCTTGCAACCCACCAGCC 60.203 61.111 0.00 0.00 0.00 4.85
3608 4285 3.855503 CTGTGGCTGCCCTCTTGCA 62.856 63.158 17.53 4.79 39.37 4.08
3628 4305 2.171635 CAGGTTAACTGCCGCTTCC 58.828 57.895 5.42 0.00 40.97 3.46
3675 4355 2.930562 GGGTGGTGCAGGAGGAGT 60.931 66.667 0.00 0.00 0.00 3.85
3809 4495 3.375782 ACAACAGCAAGAAATCAAGCC 57.624 42.857 0.00 0.00 0.00 4.35
3851 4543 6.010219 CCCCAAAAGAAGAGAACAAATAGGA 58.990 40.000 0.00 0.00 0.00 2.94
3854 4546 7.066781 AGAACCCCAAAAGAAGAGAACAAATA 58.933 34.615 0.00 0.00 0.00 1.40
3908 4603 1.064537 TGATAGCATGGCCAAGCAAGA 60.065 47.619 32.62 18.58 0.00 3.02
4076 4773 8.504811 TTCCCTCACCATCTAATCAATGTATA 57.495 34.615 0.00 0.00 0.00 1.47
4211 4908 3.454719 TGACCACCACCATCATTTCAT 57.545 42.857 0.00 0.00 0.00 2.57
4218 4915 0.035056 CCTCCTTGACCACCACCATC 60.035 60.000 0.00 0.00 0.00 3.51
4263 4960 1.524482 GCAGGGAGAAGGCCTACTG 59.476 63.158 5.16 11.13 34.74 2.74
4264 4961 1.690985 GGCAGGGAGAAGGCCTACT 60.691 63.158 5.16 0.00 44.32 2.57
4422 5126 4.666412 TGGACAAATATTTCACCCCAGA 57.334 40.909 14.03 0.00 0.00 3.86
4565 5273 4.445385 CCGCAAAGGCAAAGCATATAAATC 59.555 41.667 0.00 0.00 41.24 2.17
4599 5307 0.896940 CAGAAACACATGGCTGGCCT 60.897 55.000 13.05 0.00 36.94 5.19
4648 5356 7.290061 AGGCTGACAATATACACACCAATTAT 58.710 34.615 0.00 0.00 0.00 1.28
4651 5359 5.116084 AGGCTGACAATATACACACCAAT 57.884 39.130 0.00 0.00 0.00 3.16
4662 5370 7.394016 TCAGTTTCAGAATTAGGCTGACAATA 58.606 34.615 0.00 0.00 41.72 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.