Multiple sequence alignment - TraesCS5B01G198900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G198900 chr5B 100.000 3589 0 0 1 3589 358616270 358619858 0.000000e+00 6628.0
1 TraesCS5B01G198900 chr5B 95.455 198 8 1 3393 3589 527148796 527148599 7.480000e-82 315.0
2 TraesCS5B01G198900 chr5B 100.000 82 0 0 2461 2542 358618690 358618771 6.210000e-33 152.0
3 TraesCS5B01G198900 chr5B 100.000 82 0 0 2421 2502 358618730 358618811 6.210000e-33 152.0
4 TraesCS5B01G198900 chr5A 92.525 1699 77 14 797 2462 406475165 406476846 0.000000e+00 2388.0
5 TraesCS5B01G198900 chr5A 92.388 867 47 11 2501 3356 406476808 406477666 0.000000e+00 1218.0
6 TraesCS5B01G198900 chr5A 94.483 145 4 2 661 801 678573976 678573832 1.680000e-53 220.0
7 TraesCS5B01G198900 chr5A 93.793 145 5 2 661 801 685875103 685875247 7.800000e-52 215.0
8 TraesCS5B01G198900 chr5D 95.000 860 36 7 2501 3356 312358897 312359753 0.000000e+00 1343.0
9 TraesCS5B01G198900 chr5D 93.426 867 36 3 1616 2462 312358072 312358937 0.000000e+00 1266.0
10 TraesCS5B01G198900 chr5D 88.393 784 61 20 853 1621 312351541 312352309 0.000000e+00 917.0
11 TraesCS5B01G198900 chr5D 100.000 34 0 0 3355 3388 455856889 455856922 2.990000e-06 63.9
12 TraesCS5B01G198900 chr5D 97.297 37 1 0 3355 3391 485360935 485360899 2.990000e-06 63.9
13 TraesCS5B01G198900 chr3B 93.648 551 29 5 50 598 18514235 18514781 0.000000e+00 819.0
14 TraesCS5B01G198900 chr3B 87.755 637 61 9 2732 3356 765732904 765733535 0.000000e+00 728.0
15 TraesCS5B01G198900 chr3B 93.793 145 5 2 661 801 612035638 612035782 7.800000e-52 215.0
16 TraesCS5B01G198900 chr2B 84.085 377 48 10 1 372 26025948 26025579 1.590000e-93 353.0
17 TraesCS5B01G198900 chr2B 92.233 206 14 2 3384 3589 122440750 122440953 1.260000e-74 291.0
18 TraesCS5B01G198900 chr7B 96.970 198 5 1 3388 3584 231722890 231723087 7.430000e-87 331.0
19 TraesCS5B01G198900 chr7B 94.118 204 10 1 3388 3589 733260348 733260551 3.480000e-80 309.0
20 TraesCS5B01G198900 chr1B 95.500 200 8 1 3391 3589 502947777 502947578 5.780000e-83 318.0
21 TraesCS5B01G198900 chr1B 93.720 207 13 0 3383 3589 334689286 334689080 9.680000e-81 311.0
22 TraesCS5B01G198900 chr6B 96.842 190 5 1 3391 3579 173798015 173798204 2.080000e-82 316.0
23 TraesCS5B01G198900 chr6B 93.617 141 5 2 660 796 594438526 594438386 1.310000e-49 207.0
24 TraesCS5B01G198900 chr6B 97.297 37 1 0 3355 3391 17537298 17537262 2.990000e-06 63.9
25 TraesCS5B01G198900 chr2A 82.749 371 48 10 1 365 749965844 749966204 2.080000e-82 316.0
26 TraesCS5B01G198900 chr2D 82.825 361 52 8 8 365 482378459 482378106 7.480000e-82 315.0
27 TraesCS5B01G198900 chr2D 81.843 369 58 6 1 367 471012723 471013084 5.820000e-78 302.0
28 TraesCS5B01G198900 chr2D 94.483 145 4 2 661 801 398728223 398728079 1.680000e-53 220.0
29 TraesCS5B01G198900 chr3A 94.608 204 8 2 3388 3589 495016346 495016548 2.690000e-81 313.0
30 TraesCS5B01G198900 chr4D 82.289 367 51 12 10 367 503352185 503352546 4.500000e-79 305.0
31 TraesCS5B01G198900 chr4D 81.600 375 57 10 1 369 8880312 8879944 2.090000e-77 300.0
32 TraesCS5B01G198900 chr3D 82.038 373 54 12 1 367 516388769 516389134 4.500000e-79 305.0
33 TraesCS5B01G198900 chr3D 82.016 367 55 8 1 365 467979071 467979428 5.820000e-78 302.0
34 TraesCS5B01G198900 chr3D 100.000 34 0 0 3355 3388 606332914 606332947 2.990000e-06 63.9
35 TraesCS5B01G198900 chr1D 94.472 199 10 1 3392 3589 408964968 408965166 4.500000e-79 305.0
36 TraesCS5B01G198900 chr4B 94.483 145 4 2 661 801 73100638 73100494 1.680000e-53 220.0
37 TraesCS5B01G198900 chr4B 97.297 37 1 0 3355 3391 4970784 4970748 2.990000e-06 63.9
38 TraesCS5B01G198900 chr4B 100.000 34 0 0 3355 3388 661354903 661354936 2.990000e-06 63.9
39 TraesCS5B01G198900 chr4A 94.483 145 4 2 661 801 639055007 639055151 1.680000e-53 220.0
40 TraesCS5B01G198900 chr4A 93.836 146 4 3 661 801 2399665 2399810 7.800000e-52 215.0
41 TraesCS5B01G198900 chr4A 100.000 34 0 0 3355 3388 694886196 694886229 2.990000e-06 63.9
42 TraesCS5B01G198900 chr1A 94.483 145 4 2 661 801 124785952 124785808 1.680000e-53 220.0
43 TraesCS5B01G198900 chr7D 100.000 34 0 0 3355 3388 194465961 194465994 2.990000e-06 63.9
44 TraesCS5B01G198900 chr7A 100.000 34 0 0 3355 3388 86424093 86424126 2.990000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G198900 chr5B 358616270 358619858 3588 False 2310.666667 6628 100.0000 1 3589 3 chr5B.!!$F1 3588
1 TraesCS5B01G198900 chr5A 406475165 406477666 2501 False 1803.000000 2388 92.4565 797 3356 2 chr5A.!!$F2 2559
2 TraesCS5B01G198900 chr5D 312358072 312359753 1681 False 1304.500000 1343 94.2130 1616 3356 2 chr5D.!!$F3 1740
3 TraesCS5B01G198900 chr5D 312351541 312352309 768 False 917.000000 917 88.3930 853 1621 1 chr5D.!!$F1 768
4 TraesCS5B01G198900 chr3B 18514235 18514781 546 False 819.000000 819 93.6480 50 598 1 chr3B.!!$F1 548
5 TraesCS5B01G198900 chr3B 765732904 765733535 631 False 728.000000 728 87.7550 2732 3356 1 chr3B.!!$F3 624

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
54 55 0.034756 TGCCTCTCGCTAAAGCACAA 59.965 50.0 2.44 0.0 42.21 3.33 F
682 685 0.038159 AACTACTGAGCAGCCGACAC 60.038 55.0 0.00 0.0 0.00 3.67 F
1497 1561 0.108186 TTCTACAGATGGCAGCACGG 60.108 55.0 5.19 0.0 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1787 1851 0.253044 TCCATTCCAGTGCTGTAGCC 59.747 55.0 0.8 0.0 41.18 3.93 R
2098 2171 0.745486 CGCTTGCCATCCAGATCACA 60.745 55.0 0.0 0.0 0.00 3.58 R
3375 3479 0.474184 GGAACGGGTGGATGGATGAT 59.526 55.0 0.0 0.0 0.00 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.861462 TTTGTTTTCAAGAGGCACGG 57.139 45.000 0.00 0.00 41.09 4.94
32 33 0.383949 TTGTTTTCAAGAGGCACGGC 59.616 50.000 0.00 0.00 34.60 5.68
33 34 2.956224 TTGTTTTCAAGAGGCACGGCC 61.956 52.381 6.80 6.80 41.15 6.13
47 48 4.143333 GGCCGTGCCTCTCGCTAA 62.143 66.667 7.58 0.00 46.69 3.09
48 49 2.125673 GCCGTGCCTCTCGCTAAA 60.126 61.111 0.00 0.00 38.78 1.85
49 50 2.167861 GCCGTGCCTCTCGCTAAAG 61.168 63.158 0.00 0.00 38.78 1.85
50 51 2.167861 CCGTGCCTCTCGCTAAAGC 61.168 63.158 0.00 0.00 38.78 3.51
51 52 1.446099 CGTGCCTCTCGCTAAAGCA 60.446 57.895 2.44 0.00 42.21 3.91
52 53 2.082354 GTGCCTCTCGCTAAAGCAC 58.918 57.895 2.44 0.00 45.99 4.40
53 54 1.671166 TGCCTCTCGCTAAAGCACA 59.329 52.632 2.44 0.00 42.21 4.57
54 55 0.034756 TGCCTCTCGCTAAAGCACAA 59.965 50.000 2.44 0.00 42.21 3.33
90 91 1.222115 AACAAAGCCGTGACTCTCGC 61.222 55.000 0.00 0.00 0.00 5.03
132 135 4.935885 AAAACACATTCTTTTGCGCAAA 57.064 31.818 30.63 30.63 0.00 3.68
188 191 2.375509 AGGAAAGACCGATGGAAAACCT 59.624 45.455 0.00 0.00 44.74 3.50
234 237 4.636206 ACCGTTTAAAAAGGCAAAAATGCA 59.364 33.333 10.03 0.00 36.33 3.96
290 293 2.476051 CAGAACGCGACATGTGGC 59.524 61.111 21.60 21.60 0.00 5.01
301 304 1.066002 GACATGTGGCGAATGATTGGG 59.934 52.381 1.15 0.00 0.00 4.12
307 310 1.031571 GGCGAATGATTGGGAGCACA 61.032 55.000 0.00 0.00 0.00 4.57
315 318 3.229293 TGATTGGGAGCACACAAAATGA 58.771 40.909 2.06 0.00 42.93 2.57
320 323 2.602878 GGAGCACACAAAATGATGCTG 58.397 47.619 15.13 0.00 42.24 4.41
364 367 4.342352 AGCGCTTGTTAATTAGTTGCTC 57.658 40.909 2.64 0.00 0.00 4.26
365 368 4.003648 AGCGCTTGTTAATTAGTTGCTCT 58.996 39.130 2.64 0.00 0.00 4.09
443 446 1.201429 AAGGTCGGCATCCTGTTCCT 61.201 55.000 0.00 0.00 35.27 3.36
598 601 4.445545 GCGCTTTGGCCGTTCTCG 62.446 66.667 0.00 0.00 34.44 4.04
599 602 3.041940 CGCTTTGGCCGTTCTCGT 61.042 61.111 0.00 0.00 35.01 4.18
600 603 1.735198 CGCTTTGGCCGTTCTCGTA 60.735 57.895 0.00 0.00 35.01 3.43
601 604 1.785951 GCTTTGGCCGTTCTCGTAC 59.214 57.895 0.00 0.00 35.01 3.67
602 605 0.669625 GCTTTGGCCGTTCTCGTACT 60.670 55.000 0.00 0.00 35.01 2.73
603 606 1.403249 GCTTTGGCCGTTCTCGTACTA 60.403 52.381 0.00 0.00 35.01 1.82
604 607 2.737679 GCTTTGGCCGTTCTCGTACTAT 60.738 50.000 0.00 0.00 35.01 2.12
605 608 3.518590 CTTTGGCCGTTCTCGTACTATT 58.481 45.455 0.00 0.00 35.01 1.73
606 609 3.598019 TTGGCCGTTCTCGTACTATTT 57.402 42.857 0.00 0.00 35.01 1.40
607 610 2.883574 TGGCCGTTCTCGTACTATTTG 58.116 47.619 0.00 0.00 35.01 2.32
608 611 2.231964 TGGCCGTTCTCGTACTATTTGT 59.768 45.455 0.00 0.00 35.01 2.83
609 612 3.256558 GGCCGTTCTCGTACTATTTGTT 58.743 45.455 0.00 0.00 35.01 2.83
610 613 4.082300 TGGCCGTTCTCGTACTATTTGTTA 60.082 41.667 0.00 0.00 35.01 2.41
611 614 5.045872 GGCCGTTCTCGTACTATTTGTTAT 58.954 41.667 0.00 0.00 35.01 1.89
612 615 5.521372 GGCCGTTCTCGTACTATTTGTTATT 59.479 40.000 0.00 0.00 35.01 1.40
613 616 6.292008 GGCCGTTCTCGTACTATTTGTTATTC 60.292 42.308 0.00 0.00 35.01 1.75
614 617 6.292008 GCCGTTCTCGTACTATTTGTTATTCC 60.292 42.308 0.00 0.00 35.01 3.01
615 618 6.199719 CCGTTCTCGTACTATTTGTTATTCCC 59.800 42.308 0.00 0.00 35.01 3.97
616 619 6.976925 CGTTCTCGTACTATTTGTTATTCCCT 59.023 38.462 0.00 0.00 0.00 4.20
617 620 8.131100 CGTTCTCGTACTATTTGTTATTCCCTA 58.869 37.037 0.00 0.00 0.00 3.53
618 621 9.807649 GTTCTCGTACTATTTGTTATTCCCTAA 57.192 33.333 0.00 0.00 0.00 2.69
647 650 7.712204 TGTAGTACTGTATTCTGTCAATCCA 57.288 36.000 5.39 0.00 0.00 3.41
648 651 8.306313 TGTAGTACTGTATTCTGTCAATCCAT 57.694 34.615 5.39 0.00 0.00 3.41
649 652 8.414003 TGTAGTACTGTATTCTGTCAATCCATC 58.586 37.037 5.39 0.00 0.00 3.51
650 653 7.423844 AGTACTGTATTCTGTCAATCCATCA 57.576 36.000 0.00 0.00 0.00 3.07
651 654 7.851228 AGTACTGTATTCTGTCAATCCATCAA 58.149 34.615 0.00 0.00 0.00 2.57
652 655 8.489489 AGTACTGTATTCTGTCAATCCATCAAT 58.511 33.333 0.00 0.00 0.00 2.57
653 656 7.798596 ACTGTATTCTGTCAATCCATCAATC 57.201 36.000 0.00 0.00 0.00 2.67
654 657 7.341030 ACTGTATTCTGTCAATCCATCAATCA 58.659 34.615 0.00 0.00 0.00 2.57
655 658 7.830697 ACTGTATTCTGTCAATCCATCAATCAA 59.169 33.333 0.00 0.00 0.00 2.57
656 659 7.988737 TGTATTCTGTCAATCCATCAATCAAC 58.011 34.615 0.00 0.00 0.00 3.18
657 660 7.830697 TGTATTCTGTCAATCCATCAATCAACT 59.169 33.333 0.00 0.00 0.00 3.16
658 661 7.713734 ATTCTGTCAATCCATCAATCAACTT 57.286 32.000 0.00 0.00 0.00 2.66
659 662 7.528996 TTCTGTCAATCCATCAATCAACTTT 57.471 32.000 0.00 0.00 0.00 2.66
660 663 7.149569 TCTGTCAATCCATCAATCAACTTTC 57.850 36.000 0.00 0.00 0.00 2.62
661 664 5.941733 TGTCAATCCATCAATCAACTTTCG 58.058 37.500 0.00 0.00 0.00 3.46
662 665 5.106197 TGTCAATCCATCAATCAACTTTCGG 60.106 40.000 0.00 0.00 0.00 4.30
663 666 5.123820 GTCAATCCATCAATCAACTTTCGGA 59.876 40.000 0.00 0.00 0.00 4.55
664 667 5.709631 TCAATCCATCAATCAACTTTCGGAA 59.290 36.000 0.00 0.00 0.00 4.30
665 668 5.567138 ATCCATCAATCAACTTTCGGAAC 57.433 39.130 0.00 0.00 0.00 3.62
666 669 4.651778 TCCATCAATCAACTTTCGGAACT 58.348 39.130 0.00 0.00 0.00 3.01
667 670 5.800296 TCCATCAATCAACTTTCGGAACTA 58.200 37.500 0.00 0.00 0.00 2.24
668 671 5.642063 TCCATCAATCAACTTTCGGAACTAC 59.358 40.000 0.00 0.00 0.00 2.73
669 672 5.643777 CCATCAATCAACTTTCGGAACTACT 59.356 40.000 0.00 0.00 0.00 2.57
670 673 6.402550 CCATCAATCAACTTTCGGAACTACTG 60.403 42.308 0.00 0.00 0.00 2.74
671 674 5.849510 TCAATCAACTTTCGGAACTACTGA 58.150 37.500 0.00 0.00 0.00 3.41
672 675 5.926542 TCAATCAACTTTCGGAACTACTGAG 59.073 40.000 0.00 0.00 35.15 3.35
673 676 3.650139 TCAACTTTCGGAACTACTGAGC 58.350 45.455 0.00 0.00 35.15 4.26
674 677 3.069016 TCAACTTTCGGAACTACTGAGCA 59.931 43.478 0.00 0.00 35.15 4.26
675 678 3.305398 ACTTTCGGAACTACTGAGCAG 57.695 47.619 0.00 0.00 35.15 4.24
676 679 1.996191 CTTTCGGAACTACTGAGCAGC 59.004 52.381 0.00 0.00 35.15 5.25
677 680 0.246635 TTCGGAACTACTGAGCAGCC 59.753 55.000 0.00 0.00 35.15 4.85
678 681 1.517257 CGGAACTACTGAGCAGCCG 60.517 63.158 0.00 0.00 0.00 5.52
679 682 1.890894 GGAACTACTGAGCAGCCGA 59.109 57.895 0.00 0.00 0.00 5.54
680 683 0.458716 GGAACTACTGAGCAGCCGAC 60.459 60.000 0.00 0.00 0.00 4.79
681 684 0.243907 GAACTACTGAGCAGCCGACA 59.756 55.000 0.00 0.00 0.00 4.35
682 685 0.038159 AACTACTGAGCAGCCGACAC 60.038 55.000 0.00 0.00 0.00 3.67
683 686 1.153745 CTACTGAGCAGCCGACACC 60.154 63.158 0.00 0.00 0.00 4.16
684 687 2.564553 CTACTGAGCAGCCGACACCC 62.565 65.000 0.00 0.00 0.00 4.61
685 688 4.007644 CTGAGCAGCCGACACCCA 62.008 66.667 0.00 0.00 0.00 4.51
686 689 3.320879 CTGAGCAGCCGACACCCAT 62.321 63.158 0.00 0.00 0.00 4.00
687 690 2.821366 GAGCAGCCGACACCCATG 60.821 66.667 0.00 0.00 0.00 3.66
688 691 4.415150 AGCAGCCGACACCCATGG 62.415 66.667 4.14 4.14 0.00 3.66
693 696 4.402528 CCGACACCCATGGCCGAA 62.403 66.667 6.09 0.00 0.00 4.30
694 697 3.124921 CGACACCCATGGCCGAAC 61.125 66.667 6.09 0.00 0.00 3.95
695 698 2.033448 GACACCCATGGCCGAACA 59.967 61.111 6.09 0.00 0.00 3.18
696 699 1.378514 GACACCCATGGCCGAACAT 60.379 57.895 6.09 0.00 0.00 2.71
697 700 0.965363 GACACCCATGGCCGAACATT 60.965 55.000 6.09 0.00 0.00 2.71
698 701 0.965363 ACACCCATGGCCGAACATTC 60.965 55.000 6.09 0.00 0.00 2.67
712 715 4.621068 GAACATTCGATGCTTTGATCCA 57.379 40.909 0.00 0.00 0.00 3.41
713 716 4.595116 GAACATTCGATGCTTTGATCCAG 58.405 43.478 0.00 0.00 0.00 3.86
714 717 2.357009 ACATTCGATGCTTTGATCCAGC 59.643 45.455 6.99 6.99 37.82 4.85
715 718 1.009078 TTCGATGCTTTGATCCAGCG 58.991 50.000 8.95 5.46 40.45 5.18
716 719 0.811219 TCGATGCTTTGATCCAGCGG 60.811 55.000 7.35 1.81 40.80 5.52
717 720 1.358046 GATGCTTTGATCCAGCGGC 59.642 57.895 8.95 0.00 40.45 6.53
718 721 2.068277 GATGCTTTGATCCAGCGGCC 62.068 60.000 8.95 0.00 40.45 6.13
719 722 3.880846 GCTTTGATCCAGCGGCCG 61.881 66.667 24.05 24.05 0.00 6.13
720 723 3.204827 CTTTGATCCAGCGGCCGG 61.205 66.667 29.38 11.34 0.00 6.13
732 735 4.660938 GGCCGGCCTCCACTTTGT 62.661 66.667 38.76 0.00 0.00 2.83
733 736 3.365265 GCCGGCCTCCACTTTGTG 61.365 66.667 18.11 0.00 0.00 3.33
734 737 3.365265 CCGGCCTCCACTTTGTGC 61.365 66.667 0.00 0.00 31.34 4.57
735 738 3.365265 CGGCCTCCACTTTGTGCC 61.365 66.667 0.00 0.00 38.74 5.01
736 739 2.203480 GGCCTCCACTTTGTGCCA 60.203 61.111 0.00 0.00 41.76 4.92
737 740 1.607467 GGCCTCCACTTTGTGCCAT 60.607 57.895 0.00 0.00 41.76 4.40
738 741 1.588082 GCCTCCACTTTGTGCCATG 59.412 57.895 0.00 0.00 31.34 3.66
739 742 1.588082 CCTCCACTTTGTGCCATGC 59.412 57.895 0.00 0.00 31.34 4.06
740 743 1.180456 CCTCCACTTTGTGCCATGCA 61.180 55.000 0.00 0.00 35.60 3.96
741 744 0.892755 CTCCACTTTGTGCCATGCAT 59.107 50.000 0.00 0.00 41.91 3.96
742 745 0.604073 TCCACTTTGTGCCATGCATG 59.396 50.000 20.19 20.19 41.91 4.06
743 746 0.319083 CCACTTTGTGCCATGCATGT 59.681 50.000 24.58 0.95 41.91 3.21
744 747 1.545136 CCACTTTGTGCCATGCATGTA 59.455 47.619 24.58 11.07 41.91 2.29
745 748 2.598589 CACTTTGTGCCATGCATGTAC 58.401 47.619 24.58 21.44 41.91 2.90
746 749 1.199789 ACTTTGTGCCATGCATGTACG 59.800 47.619 24.58 11.18 41.91 3.67
747 750 0.525311 TTTGTGCCATGCATGTACGG 59.475 50.000 24.58 11.04 41.91 4.02
748 751 0.607762 TTGTGCCATGCATGTACGGT 60.608 50.000 24.58 0.00 41.91 4.83
749 752 1.024046 TGTGCCATGCATGTACGGTC 61.024 55.000 24.58 11.27 41.91 4.79
750 753 1.024046 GTGCCATGCATGTACGGTCA 61.024 55.000 24.58 9.33 41.91 4.02
751 754 0.744057 TGCCATGCATGTACGGTCAG 60.744 55.000 24.58 8.31 31.71 3.51
752 755 0.461870 GCCATGCATGTACGGTCAGA 60.462 55.000 24.58 0.00 0.00 3.27
753 756 1.811558 GCCATGCATGTACGGTCAGAT 60.812 52.381 24.58 0.00 0.00 2.90
754 757 2.138320 CCATGCATGTACGGTCAGATC 58.862 52.381 24.58 0.00 0.00 2.75
755 758 2.483538 CCATGCATGTACGGTCAGATCA 60.484 50.000 24.58 0.00 0.00 2.92
756 759 2.584492 TGCATGTACGGTCAGATCAG 57.416 50.000 0.00 0.00 0.00 2.90
757 760 1.824852 TGCATGTACGGTCAGATCAGT 59.175 47.619 0.00 0.00 0.00 3.41
758 761 3.020984 TGCATGTACGGTCAGATCAGTA 58.979 45.455 0.00 0.00 0.00 2.74
759 762 3.066760 TGCATGTACGGTCAGATCAGTAG 59.933 47.826 0.00 0.00 0.00 2.57
760 763 3.633235 CATGTACGGTCAGATCAGTAGC 58.367 50.000 0.00 0.00 0.00 3.58
761 764 2.718563 TGTACGGTCAGATCAGTAGCA 58.281 47.619 0.00 0.00 0.00 3.49
762 765 3.288092 TGTACGGTCAGATCAGTAGCAT 58.712 45.455 0.00 0.00 0.00 3.79
763 766 3.315470 TGTACGGTCAGATCAGTAGCATC 59.685 47.826 0.00 0.00 0.00 3.91
764 767 1.335182 ACGGTCAGATCAGTAGCATCG 59.665 52.381 0.00 0.00 0.00 3.84
765 768 1.335182 CGGTCAGATCAGTAGCATCGT 59.665 52.381 0.00 0.00 0.00 3.73
766 769 2.603412 CGGTCAGATCAGTAGCATCGTC 60.603 54.545 0.00 0.00 0.00 4.20
767 770 2.287909 GGTCAGATCAGTAGCATCGTCC 60.288 54.545 0.00 0.00 0.00 4.79
768 771 2.359214 GTCAGATCAGTAGCATCGTCCA 59.641 50.000 0.00 0.00 0.00 4.02
769 772 3.023832 TCAGATCAGTAGCATCGTCCAA 58.976 45.455 0.00 0.00 0.00 3.53
770 773 3.447229 TCAGATCAGTAGCATCGTCCAAA 59.553 43.478 0.00 0.00 0.00 3.28
771 774 3.553511 CAGATCAGTAGCATCGTCCAAAC 59.446 47.826 0.00 0.00 0.00 2.93
772 775 3.195610 AGATCAGTAGCATCGTCCAAACA 59.804 43.478 0.00 0.00 0.00 2.83
773 776 3.610040 TCAGTAGCATCGTCCAAACAT 57.390 42.857 0.00 0.00 0.00 2.71
774 777 3.521560 TCAGTAGCATCGTCCAAACATC 58.478 45.455 0.00 0.00 0.00 3.06
775 778 2.282555 CAGTAGCATCGTCCAAACATCG 59.717 50.000 0.00 0.00 0.00 3.84
776 779 1.593006 GTAGCATCGTCCAAACATCGG 59.407 52.381 0.00 0.00 0.00 4.18
777 780 1.062525 GCATCGTCCAAACATCGGC 59.937 57.895 0.00 0.00 0.00 5.54
778 781 1.369091 GCATCGTCCAAACATCGGCT 61.369 55.000 0.00 0.00 0.00 5.52
779 782 0.374758 CATCGTCCAAACATCGGCTG 59.625 55.000 0.00 0.00 0.00 4.85
780 783 1.369091 ATCGTCCAAACATCGGCTGC 61.369 55.000 0.00 0.00 0.00 5.25
781 784 2.324330 CGTCCAAACATCGGCTGCA 61.324 57.895 0.50 0.00 0.00 4.41
782 785 1.210155 GTCCAAACATCGGCTGCAC 59.790 57.895 0.50 0.00 0.00 4.57
783 786 1.228094 TCCAAACATCGGCTGCACA 60.228 52.632 0.50 0.00 0.00 4.57
784 787 1.081242 CCAAACATCGGCTGCACAC 60.081 57.895 0.50 0.00 0.00 3.82
785 788 1.081242 CAAACATCGGCTGCACACC 60.081 57.895 0.50 0.00 0.00 4.16
800 803 3.706287 CACCGTCGTGTGTATAGCA 57.294 52.632 5.89 0.00 35.10 3.49
801 804 1.985334 CACCGTCGTGTGTATAGCAA 58.015 50.000 5.89 0.00 35.10 3.91
802 805 2.536365 CACCGTCGTGTGTATAGCAAT 58.464 47.619 5.89 0.00 35.10 3.56
803 806 2.927477 CACCGTCGTGTGTATAGCAATT 59.073 45.455 5.89 0.00 35.10 2.32
804 807 3.369756 CACCGTCGTGTGTATAGCAATTT 59.630 43.478 5.89 0.00 35.10 1.82
805 808 3.615496 ACCGTCGTGTGTATAGCAATTTC 59.385 43.478 0.00 0.00 0.00 2.17
806 809 3.863424 CCGTCGTGTGTATAGCAATTTCT 59.137 43.478 0.00 0.00 0.00 2.52
807 810 4.026804 CCGTCGTGTGTATAGCAATTTCTC 60.027 45.833 0.00 0.00 0.00 2.87
808 811 4.798907 CGTCGTGTGTATAGCAATTTCTCT 59.201 41.667 0.00 0.00 0.00 3.10
809 812 5.969435 CGTCGTGTGTATAGCAATTTCTCTA 59.031 40.000 0.00 0.00 0.00 2.43
810 813 6.075519 CGTCGTGTGTATAGCAATTTCTCTAC 60.076 42.308 0.00 0.00 0.00 2.59
811 814 6.750501 GTCGTGTGTATAGCAATTTCTCTACA 59.249 38.462 0.32 0.32 0.00 2.74
812 815 7.435488 GTCGTGTGTATAGCAATTTCTCTACAT 59.565 37.037 6.62 0.00 31.36 2.29
813 816 7.435192 TCGTGTGTATAGCAATTTCTCTACATG 59.565 37.037 6.62 0.00 31.36 3.21
814 817 7.306807 CGTGTGTATAGCAATTTCTCTACATGG 60.307 40.741 6.62 0.00 31.36 3.66
815 818 7.495934 GTGTGTATAGCAATTTCTCTACATGGT 59.504 37.037 6.62 0.00 31.36 3.55
816 819 8.046708 TGTGTATAGCAATTTCTCTACATGGTT 58.953 33.333 6.62 0.00 31.36 3.67
817 820 8.893727 GTGTATAGCAATTTCTCTACATGGTTT 58.106 33.333 6.62 0.00 31.36 3.27
818 821 9.109393 TGTATAGCAATTTCTCTACATGGTTTC 57.891 33.333 0.00 0.00 0.00 2.78
819 822 5.551760 AGCAATTTCTCTACATGGTTTCG 57.448 39.130 0.00 0.00 0.00 3.46
820 823 4.098416 GCAATTTCTCTACATGGTTTCGC 58.902 43.478 0.00 0.00 0.00 4.70
821 824 4.142600 GCAATTTCTCTACATGGTTTCGCT 60.143 41.667 0.00 0.00 0.00 4.93
822 825 5.064707 GCAATTTCTCTACATGGTTTCGCTA 59.935 40.000 0.00 0.00 0.00 4.26
823 826 6.478588 CAATTTCTCTACATGGTTTCGCTAC 58.521 40.000 0.00 0.00 0.00 3.58
824 827 4.794278 TTCTCTACATGGTTTCGCTACA 57.206 40.909 0.00 0.00 0.00 2.74
825 828 5.339008 TTCTCTACATGGTTTCGCTACAT 57.661 39.130 0.00 0.00 0.00 2.29
826 829 4.933330 TCTCTACATGGTTTCGCTACATC 58.067 43.478 0.00 0.00 0.00 3.06
827 830 4.645136 TCTCTACATGGTTTCGCTACATCT 59.355 41.667 0.00 0.00 0.00 2.90
828 831 4.933330 TCTACATGGTTTCGCTACATCTC 58.067 43.478 0.00 0.00 0.00 2.75
829 832 3.895232 ACATGGTTTCGCTACATCTCT 57.105 42.857 0.00 0.00 0.00 3.10
830 833 3.786635 ACATGGTTTCGCTACATCTCTC 58.213 45.455 0.00 0.00 0.00 3.20
831 834 3.195610 ACATGGTTTCGCTACATCTCTCA 59.804 43.478 0.00 0.00 0.00 3.27
832 835 3.510388 TGGTTTCGCTACATCTCTCAG 57.490 47.619 0.00 0.00 0.00 3.35
833 836 2.197577 GGTTTCGCTACATCTCTCAGC 58.802 52.381 0.00 0.00 0.00 4.26
834 837 2.417379 GGTTTCGCTACATCTCTCAGCA 60.417 50.000 0.00 0.00 34.94 4.41
851 854 5.187381 TCTCAGCAATTTCTCTGTGAGATCT 59.813 40.000 0.00 0.00 38.56 2.75
871 874 2.811431 CTGTCTCGCTACATCTCCTAGG 59.189 54.545 0.82 0.82 0.00 3.02
879 882 5.010112 TCGCTACATCTCCTAGGAATTTCTG 59.990 44.000 13.77 8.30 0.00 3.02
921 955 5.118990 GCATCTCCTAGCAATTTCACTGTA 58.881 41.667 0.00 0.00 0.00 2.74
965 999 4.013728 TCGGATTTCGAATTTCACCCATT 58.986 39.130 0.00 0.00 45.86 3.16
1065 1108 1.269998 AGTCTCAGTCACCGTGCTTAC 59.730 52.381 0.00 0.00 0.00 2.34
1089 1132 2.177531 GCGACCGCTACTCGTTCA 59.822 61.111 7.19 0.00 38.26 3.18
1497 1561 0.108186 TTCTACAGATGGCAGCACGG 60.108 55.000 5.19 0.00 0.00 4.94
1508 1572 1.237285 GCAGCACGGGAGTTGTCAAT 61.237 55.000 0.00 0.00 44.67 2.57
1609 1673 3.357079 CTGCTGCCCACGGACAAC 61.357 66.667 0.00 0.00 0.00 3.32
1622 1686 4.142902 CCACGGACAACAAGATGTATGTTC 60.143 45.833 0.00 0.00 38.90 3.18
1649 1713 2.270986 GCCACAAGGGACCTGCTTG 61.271 63.158 8.49 8.49 40.01 4.01
1660 1724 2.256461 CTGCTTGCTTTGCCCGAC 59.744 61.111 0.00 0.00 0.00 4.79
1699 1763 1.069935 GCCATCCTCCTTCTACCGC 59.930 63.158 0.00 0.00 0.00 5.68
1717 1781 1.238625 GCGGGAATGTTGGTTTCGGA 61.239 55.000 0.00 0.00 0.00 4.55
1720 1784 0.109919 GGAATGTTGGTTTCGGACGC 60.110 55.000 0.00 0.00 0.00 5.19
1727 1791 2.808321 GTTTCGGACGCGACCCTC 60.808 66.667 21.60 3.78 0.00 4.30
1747 1811 1.070843 CGCACGAACAAGTACAAGGTG 60.071 52.381 0.00 0.00 0.00 4.00
1759 1823 1.680338 ACAAGGTGGTTCAGTGCTTC 58.320 50.000 0.00 0.00 0.00 3.86
1783 1847 0.680921 ATTCCACGGACAATGGCCTG 60.681 55.000 2.56 0.18 37.13 4.85
1787 1851 4.820744 CGGACAATGGCCTGGGGG 62.821 72.222 2.56 0.00 0.00 5.40
1813 1877 2.229784 CAGCACTGGAATGGAGGTTTTC 59.770 50.000 0.00 0.00 0.00 2.29
1848 1921 4.802051 TTCTGCGGCATGGAGGGC 62.802 66.667 1.75 0.00 36.53 5.19
2032 2105 1.152777 CCCTGCACTTGACCACCAA 60.153 57.895 0.00 0.00 0.00 3.67
2055 2128 3.679389 ACTTTGCCATGAGTGAACTAGG 58.321 45.455 0.00 0.00 0.00 3.02
2090 2163 5.298527 TGCCTTGCTCAATATGAATCTTCAG 59.701 40.000 0.00 0.00 41.08 3.02
2094 2167 7.444487 CCTTGCTCAATATGAATCTTCAGATCA 59.556 37.037 0.89 0.00 38.09 2.92
2096 2169 7.732996 TGCTCAATATGAATCTTCAGATCAGA 58.267 34.615 0.89 0.00 38.09 3.27
2098 2171 9.221933 GCTCAATATGAATCTTCAGATCAGATT 57.778 33.333 6.50 6.50 42.57 2.40
2470 2554 9.950496 ACATGTATGAATGGAAGTATTATCCTC 57.050 33.333 0.00 0.00 37.85 3.71
2473 2557 9.607333 TGTATGAATGGAAGTATTATCCTCTCT 57.393 33.333 0.00 0.00 37.85 3.10
2510 2594 9.950496 ACATGTATGAATGGAAGTATTATCCTC 57.050 33.333 0.00 0.00 37.85 3.71
2513 2597 9.607333 TGTATGAATGGAAGTATTATCCTCTCT 57.393 33.333 0.00 0.00 37.85 3.10
2579 2663 1.755179 CACTAGTGGCAAATCCCTGG 58.245 55.000 15.49 0.00 0.00 4.45
2653 2737 5.076182 TGATGTCCATTTAGAGTGGCAAAA 58.924 37.500 0.00 0.00 36.66 2.44
2683 2767 0.823460 ACAAAAACCAGTGTGGCCAG 59.177 50.000 5.11 0.00 42.67 4.85
2789 2873 9.849166 TGAAAAAGAAAACAAGAAAGACGTTAT 57.151 25.926 0.00 0.00 0.00 1.89
2844 2928 1.417890 ACCTCAACACAAGGAGTCCAG 59.582 52.381 12.86 5.99 37.35 3.86
2922 3015 8.966069 AAAAATACATAGCCTCCTCTTCTTAC 57.034 34.615 0.00 0.00 0.00 2.34
2932 3025 4.187694 CTCCTCTTCTTACAATCCAGTGC 58.812 47.826 0.00 0.00 0.00 4.40
3005 3099 2.440409 CAAGACCCCTTGTGGATTGAG 58.560 52.381 0.00 0.00 43.60 3.02
3019 3113 2.165845 GGATTGAGCATGCTTCAAGCTT 59.834 45.455 29.55 18.47 38.55 3.74
3021 3115 4.142315 GGATTGAGCATGCTTCAAGCTTAA 60.142 41.667 29.55 15.54 38.55 1.85
3022 3116 4.430137 TTGAGCATGCTTCAAGCTTAAG 57.570 40.909 23.61 5.06 38.55 1.85
3023 3117 3.415212 TGAGCATGCTTCAAGCTTAAGT 58.585 40.909 23.61 0.00 38.55 2.24
3024 3118 3.189910 TGAGCATGCTTCAAGCTTAAGTG 59.810 43.478 23.61 3.28 38.55 3.16
3025 3119 3.415212 AGCATGCTTCAAGCTTAAGTGA 58.585 40.909 16.30 0.00 42.97 3.41
3026 3120 3.190118 AGCATGCTTCAAGCTTAAGTGAC 59.810 43.478 16.30 0.00 42.97 3.67
3027 3121 3.671702 GCATGCTTCAAGCTTAAGTGACC 60.672 47.826 11.57 0.00 42.97 4.02
3087 3191 2.822561 TGCGTATTCTTGCCATCCAAAA 59.177 40.909 0.00 0.00 31.94 2.44
3099 3203 4.776837 TGCCATCCAAAAATTACCATGAGT 59.223 37.500 0.00 0.00 0.00 3.41
3152 3256 5.565637 GCATCTCCGATCTTAGCATTACTGA 60.566 44.000 0.00 0.00 0.00 3.41
3180 3284 3.907221 TCCTAGTCTACCACATACCACC 58.093 50.000 0.00 0.00 0.00 4.61
3227 3331 5.480642 ACTAATGATGGCATGTAGAGGAG 57.519 43.478 3.81 0.00 34.26 3.69
3253 3357 2.597455 AGGAAGAAAACACCACCATGG 58.403 47.619 11.19 11.19 45.02 3.66
3259 3363 1.851304 AAACACCACCATGGCCATAG 58.149 50.000 20.30 14.80 42.67 2.23
3331 3435 0.546598 AGCCGTCCCCAAAGATAAGG 59.453 55.000 0.00 0.00 0.00 2.69
3353 3457 6.302269 AGGCTCCATTGAAAGATAACCATAG 58.698 40.000 0.00 0.00 0.00 2.23
3355 3459 6.299141 GCTCCATTGAAAGATAACCATAGGA 58.701 40.000 0.00 0.00 0.00 2.94
3357 3461 7.255277 GCTCCATTGAAAGATAACCATAGGAAC 60.255 40.741 0.00 0.00 0.00 3.62
3358 3462 7.872138 TCCATTGAAAGATAACCATAGGAACT 58.128 34.615 0.00 0.00 46.37 3.01
3359 3463 7.775093 TCCATTGAAAGATAACCATAGGAACTG 59.225 37.037 0.00 0.00 41.52 3.16
3360 3464 7.775093 CCATTGAAAGATAACCATAGGAACTGA 59.225 37.037 0.00 0.00 41.52 3.41
3361 3465 9.177608 CATTGAAAGATAACCATAGGAACTGAA 57.822 33.333 0.00 0.00 41.52 3.02
3362 3466 9.927081 ATTGAAAGATAACCATAGGAACTGAAT 57.073 29.630 0.00 0.00 41.52 2.57
3363 3467 8.964476 TGAAAGATAACCATAGGAACTGAATC 57.036 34.615 0.00 0.00 41.52 2.52
3364 3468 7.993183 TGAAAGATAACCATAGGAACTGAATCC 59.007 37.037 0.00 0.00 41.52 3.01
3377 3481 7.489574 GGAACTGAATCCTCTCAACATAATC 57.510 40.000 0.00 0.00 36.50 1.75
3378 3482 7.050377 GGAACTGAATCCTCTCAACATAATCA 58.950 38.462 0.00 0.00 36.50 2.57
3379 3483 7.718753 GGAACTGAATCCTCTCAACATAATCAT 59.281 37.037 0.00 0.00 36.50 2.45
3380 3484 8.674263 AACTGAATCCTCTCAACATAATCATC 57.326 34.615 0.00 0.00 0.00 2.92
3381 3485 7.222872 ACTGAATCCTCTCAACATAATCATCC 58.777 38.462 0.00 0.00 0.00 3.51
3382 3486 7.140522 TGAATCCTCTCAACATAATCATCCA 57.859 36.000 0.00 0.00 0.00 3.41
3383 3487 7.752638 TGAATCCTCTCAACATAATCATCCAT 58.247 34.615 0.00 0.00 0.00 3.41
3384 3488 7.881751 TGAATCCTCTCAACATAATCATCCATC 59.118 37.037 0.00 0.00 0.00 3.51
3385 3489 6.119240 TCCTCTCAACATAATCATCCATCC 57.881 41.667 0.00 0.00 0.00 3.51
3386 3490 5.608015 TCCTCTCAACATAATCATCCATCCA 59.392 40.000 0.00 0.00 0.00 3.41
3387 3491 5.704515 CCTCTCAACATAATCATCCATCCAC 59.295 44.000 0.00 0.00 0.00 4.02
3388 3492 5.624159 TCTCAACATAATCATCCATCCACC 58.376 41.667 0.00 0.00 0.00 4.61
3389 3493 4.728772 TCAACATAATCATCCATCCACCC 58.271 43.478 0.00 0.00 0.00 4.61
3390 3494 3.423539 ACATAATCATCCATCCACCCG 57.576 47.619 0.00 0.00 0.00 5.28
3391 3495 2.711009 ACATAATCATCCATCCACCCGT 59.289 45.455 0.00 0.00 0.00 5.28
3392 3496 3.138283 ACATAATCATCCATCCACCCGTT 59.862 43.478 0.00 0.00 0.00 4.44
3393 3497 2.348411 AATCATCCATCCACCCGTTC 57.652 50.000 0.00 0.00 0.00 3.95
3394 3498 0.474184 ATCATCCATCCACCCGTTCC 59.526 55.000 0.00 0.00 0.00 3.62
3395 3499 1.152963 CATCCATCCACCCGTTCCC 60.153 63.158 0.00 0.00 0.00 3.97
3396 3500 2.383601 ATCCATCCACCCGTTCCCC 61.384 63.158 0.00 0.00 0.00 4.81
3397 3501 2.857998 ATCCATCCACCCGTTCCCCT 62.858 60.000 0.00 0.00 0.00 4.79
3398 3502 2.590092 CATCCACCCGTTCCCCTC 59.410 66.667 0.00 0.00 0.00 4.30
3399 3503 2.691252 ATCCACCCGTTCCCCTCC 60.691 66.667 0.00 0.00 0.00 4.30
3405 3509 3.459063 CCGTTCCCCTCCCGAGTC 61.459 72.222 0.00 0.00 0.00 3.36
3406 3510 3.823330 CGTTCCCCTCCCGAGTCG 61.823 72.222 5.29 5.29 0.00 4.18
3407 3511 4.144703 GTTCCCCTCCCGAGTCGC 62.145 72.222 7.12 0.00 0.00 5.19
3438 3542 2.908796 GGGAGGAAACCCTAGCCG 59.091 66.667 0.00 0.00 45.90 5.52
3439 3543 2.189784 GGAGGAAACCCTAGCCGC 59.810 66.667 0.00 0.00 33.25 6.53
3440 3544 2.202892 GAGGAAACCCTAGCCGCG 60.203 66.667 0.00 0.00 33.25 6.46
3441 3545 3.735037 GAGGAAACCCTAGCCGCGG 62.735 68.421 24.05 24.05 33.25 6.46
3464 3568 4.416601 CGGGTCCCCCTCCCTCTT 62.417 72.222 1.00 0.00 42.67 2.85
3465 3569 2.367107 GGGTCCCCCTCCCTCTTC 60.367 72.222 0.00 0.00 41.34 2.87
3466 3570 2.367107 GGTCCCCCTCCCTCTTCC 60.367 72.222 0.00 0.00 0.00 3.46
3467 3571 2.367107 GTCCCCCTCCCTCTTCCC 60.367 72.222 0.00 0.00 0.00 3.97
3468 3572 3.707189 TCCCCCTCCCTCTTCCCC 61.707 72.222 0.00 0.00 0.00 4.81
3469 3573 3.711782 CCCCCTCCCTCTTCCCCT 61.712 72.222 0.00 0.00 0.00 4.79
3470 3574 2.040359 CCCCTCCCTCTTCCCCTC 60.040 72.222 0.00 0.00 0.00 4.30
3471 3575 2.652113 CCCCTCCCTCTTCCCCTCT 61.652 68.421 0.00 0.00 0.00 3.69
3472 3576 1.074850 CCCTCCCTCTTCCCCTCTC 60.075 68.421 0.00 0.00 0.00 3.20
3473 3577 1.074850 CCTCCCTCTTCCCCTCTCC 60.075 68.421 0.00 0.00 0.00 3.71
3474 3578 1.074850 CTCCCTCTTCCCCTCTCCC 60.075 68.421 0.00 0.00 0.00 4.30
3475 3579 2.040359 CCCTCTTCCCCTCTCCCC 60.040 72.222 0.00 0.00 0.00 4.81
3476 3580 2.652113 CCCTCTTCCCCTCTCCCCT 61.652 68.421 0.00 0.00 0.00 4.79
3477 3581 1.074850 CCTCTTCCCCTCTCCCCTC 60.075 68.421 0.00 0.00 0.00 4.30
3478 3582 1.456705 CTCTTCCCCTCTCCCCTCG 60.457 68.421 0.00 0.00 0.00 4.63
3479 3583 2.231540 CTCTTCCCCTCTCCCCTCGT 62.232 65.000 0.00 0.00 0.00 4.18
3480 3584 1.758906 CTTCCCCTCTCCCCTCGTC 60.759 68.421 0.00 0.00 0.00 4.20
3481 3585 3.657038 TTCCCCTCTCCCCTCGTCG 62.657 68.421 0.00 0.00 0.00 5.12
3543 3647 4.452733 CGGCGGGGAGTTCCTGTC 62.453 72.222 0.00 0.00 43.94 3.51
3544 3648 4.097361 GGCGGGGAGTTCCTGTCC 62.097 72.222 0.00 0.00 43.94 4.02
3549 3653 4.899243 GGAGTTCCTGTCCCCTCT 57.101 61.111 0.00 0.00 0.00 3.69
3550 3654 2.597995 GGAGTTCCTGTCCCCTCTC 58.402 63.158 0.00 0.00 0.00 3.20
3551 3655 1.324005 GGAGTTCCTGTCCCCTCTCG 61.324 65.000 0.00 0.00 0.00 4.04
3552 3656 1.950973 GAGTTCCTGTCCCCTCTCGC 61.951 65.000 0.00 0.00 0.00 5.03
3553 3657 3.068691 TTCCTGTCCCCTCTCGCG 61.069 66.667 0.00 0.00 0.00 5.87
3554 3658 3.881019 TTCCTGTCCCCTCTCGCGT 62.881 63.158 5.77 0.00 0.00 6.01
3555 3659 3.827898 CCTGTCCCCTCTCGCGTC 61.828 72.222 5.77 0.00 0.00 5.19
3556 3660 4.180946 CTGTCCCCTCTCGCGTCG 62.181 72.222 5.77 0.00 0.00 5.12
3557 3661 4.710167 TGTCCCCTCTCGCGTCGA 62.710 66.667 5.77 3.10 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.516615 CCGTGCCTCTTGAAAACAAAAA 58.483 40.909 0.00 0.00 0.00 1.94
11 12 2.737039 GCCGTGCCTCTTGAAAACAAAA 60.737 45.455 0.00 0.00 0.00 2.44
12 13 1.202359 GCCGTGCCTCTTGAAAACAAA 60.202 47.619 0.00 0.00 0.00 2.83
13 14 0.383949 GCCGTGCCTCTTGAAAACAA 59.616 50.000 0.00 0.00 0.00 2.83
14 15 1.452145 GGCCGTGCCTCTTGAAAACA 61.452 55.000 7.58 0.00 46.69 2.83
15 16 1.285950 GGCCGTGCCTCTTGAAAAC 59.714 57.895 7.58 0.00 46.69 2.43
16 17 3.758172 GGCCGTGCCTCTTGAAAA 58.242 55.556 7.58 0.00 46.69 2.29
36 37 0.444260 GTTGTGCTTTAGCGAGAGGC 59.556 55.000 0.00 0.00 45.83 4.70
37 38 1.079503 GGTTGTGCTTTAGCGAGAGG 58.920 55.000 0.00 0.00 45.83 3.69
38 39 0.716108 CGGTTGTGCTTTAGCGAGAG 59.284 55.000 0.00 0.00 45.83 3.20
39 40 0.032952 ACGGTTGTGCTTTAGCGAGA 59.967 50.000 10.18 0.00 45.83 4.04
40 41 0.163788 CACGGTTGTGCTTTAGCGAG 59.836 55.000 10.18 0.56 45.83 5.03
41 42 2.230892 CACGGTTGTGCTTTAGCGA 58.769 52.632 10.18 0.00 45.83 4.93
42 43 4.818417 CACGGTTGTGCTTTAGCG 57.182 55.556 0.00 0.00 45.83 4.26
165 168 4.042435 AGGTTTTCCATCGGTCTTTCCTAA 59.958 41.667 0.00 0.00 43.73 2.69
170 173 4.214758 CGTTTAGGTTTTCCATCGGTCTTT 59.785 41.667 0.00 0.00 43.73 2.52
172 175 3.244318 ACGTTTAGGTTTTCCATCGGTCT 60.244 43.478 0.00 0.00 43.73 3.85
188 191 2.338577 TTGGGGGTTTTCGACGTTTA 57.661 45.000 0.00 0.00 0.00 2.01
211 214 4.636206 TGCATTTTTGCCTTTTTAAACGGT 59.364 33.333 2.26 0.00 0.00 4.83
224 227 8.941127 TTTTATTTTTCCGTATGCATTTTTGC 57.059 26.923 3.54 0.00 0.00 3.68
253 256 2.507886 TGGATGCTCCCTTCGGATTTTA 59.492 45.455 0.50 0.00 37.60 1.52
269 272 0.371301 CACATGTCGCGTTCTGGATG 59.629 55.000 5.77 3.33 0.00 3.51
270 273 0.740868 CCACATGTCGCGTTCTGGAT 60.741 55.000 5.77 0.00 0.00 3.41
271 274 1.374125 CCACATGTCGCGTTCTGGA 60.374 57.895 5.77 0.00 0.00 3.86
290 293 1.452110 TGTGTGCTCCCAATCATTCG 58.548 50.000 0.00 0.00 0.00 3.34
301 304 3.564235 TCAGCATCATTTTGTGTGCTC 57.436 42.857 0.00 0.00 40.66 4.26
307 310 3.504863 GCAACGATCAGCATCATTTTGT 58.495 40.909 0.00 0.00 0.00 2.83
315 318 2.176273 GCCTCGCAACGATCAGCAT 61.176 57.895 0.00 0.00 34.61 3.79
320 323 2.586357 GGGAGCCTCGCAACGATC 60.586 66.667 3.57 0.00 34.61 3.69
364 367 2.770164 AAGTGGGACCGATTTGAGAG 57.230 50.000 0.00 0.00 0.00 3.20
365 368 3.502123 AAAAGTGGGACCGATTTGAGA 57.498 42.857 0.00 0.00 0.00 3.27
443 446 4.085357 AGCAAAGTGTCCATGTTCAGTA 57.915 40.909 0.00 0.00 0.00 2.74
525 528 3.363970 CGTGGCATTAATTGATAGCGGAC 60.364 47.826 0.00 0.00 0.00 4.79
591 594 6.976925 AGGGAATAACAAATAGTACGAGAACG 59.023 38.462 0.00 0.00 45.75 3.95
621 624 8.758829 TGGATTGACAGAATACAGTACTACATT 58.241 33.333 0.00 0.00 0.00 2.71
622 625 8.306313 TGGATTGACAGAATACAGTACTACAT 57.694 34.615 0.00 0.00 0.00 2.29
623 626 7.712204 TGGATTGACAGAATACAGTACTACA 57.288 36.000 0.00 0.00 0.00 2.74
624 627 8.414003 TGATGGATTGACAGAATACAGTACTAC 58.586 37.037 0.00 0.00 0.00 2.73
625 628 8.533569 TGATGGATTGACAGAATACAGTACTA 57.466 34.615 0.00 0.00 0.00 1.82
626 629 7.423844 TGATGGATTGACAGAATACAGTACT 57.576 36.000 0.00 0.00 0.00 2.73
627 630 8.668510 ATTGATGGATTGACAGAATACAGTAC 57.331 34.615 0.00 0.00 0.00 2.73
628 631 8.485392 TGATTGATGGATTGACAGAATACAGTA 58.515 33.333 0.00 0.00 0.00 2.74
629 632 7.341030 TGATTGATGGATTGACAGAATACAGT 58.659 34.615 0.00 0.00 0.00 3.55
630 633 7.797038 TGATTGATGGATTGACAGAATACAG 57.203 36.000 0.00 0.00 0.00 2.74
631 634 7.830697 AGTTGATTGATGGATTGACAGAATACA 59.169 33.333 0.00 0.00 0.00 2.29
632 635 8.218338 AGTTGATTGATGGATTGACAGAATAC 57.782 34.615 0.00 0.00 0.00 1.89
633 636 8.812513 AAGTTGATTGATGGATTGACAGAATA 57.187 30.769 0.00 0.00 0.00 1.75
634 637 7.713734 AAGTTGATTGATGGATTGACAGAAT 57.286 32.000 0.00 0.00 0.00 2.40
635 638 7.528996 AAAGTTGATTGATGGATTGACAGAA 57.471 32.000 0.00 0.00 0.00 3.02
636 639 6.128200 CGAAAGTTGATTGATGGATTGACAGA 60.128 38.462 0.00 0.00 0.00 3.41
637 640 6.025896 CGAAAGTTGATTGATGGATTGACAG 58.974 40.000 0.00 0.00 0.00 3.51
638 641 5.106197 CCGAAAGTTGATTGATGGATTGACA 60.106 40.000 0.00 0.00 0.00 3.58
639 642 5.123820 TCCGAAAGTTGATTGATGGATTGAC 59.876 40.000 0.00 0.00 0.00 3.18
640 643 5.252547 TCCGAAAGTTGATTGATGGATTGA 58.747 37.500 0.00 0.00 0.00 2.57
641 644 5.565592 TCCGAAAGTTGATTGATGGATTG 57.434 39.130 0.00 0.00 0.00 2.67
642 645 5.711976 AGTTCCGAAAGTTGATTGATGGATT 59.288 36.000 0.00 0.00 0.00 3.01
643 646 5.256474 AGTTCCGAAAGTTGATTGATGGAT 58.744 37.500 0.00 0.00 0.00 3.41
644 647 4.651778 AGTTCCGAAAGTTGATTGATGGA 58.348 39.130 0.00 0.00 0.00 3.41
645 648 5.643777 AGTAGTTCCGAAAGTTGATTGATGG 59.356 40.000 0.00 0.00 0.00 3.51
646 649 6.368791 TCAGTAGTTCCGAAAGTTGATTGATG 59.631 38.462 0.00 0.00 0.00 3.07
647 650 6.464222 TCAGTAGTTCCGAAAGTTGATTGAT 58.536 36.000 0.00 0.00 0.00 2.57
648 651 5.849510 TCAGTAGTTCCGAAAGTTGATTGA 58.150 37.500 0.00 0.00 0.00 2.57
649 652 5.389935 GCTCAGTAGTTCCGAAAGTTGATTG 60.390 44.000 0.00 0.00 0.00 2.67
650 653 4.691216 GCTCAGTAGTTCCGAAAGTTGATT 59.309 41.667 0.00 0.00 0.00 2.57
651 654 4.246458 GCTCAGTAGTTCCGAAAGTTGAT 58.754 43.478 0.00 0.00 0.00 2.57
652 655 3.069016 TGCTCAGTAGTTCCGAAAGTTGA 59.931 43.478 0.00 0.00 0.00 3.18
653 656 3.390135 TGCTCAGTAGTTCCGAAAGTTG 58.610 45.455 0.00 0.00 0.00 3.16
654 657 3.654414 CTGCTCAGTAGTTCCGAAAGTT 58.346 45.455 0.00 0.00 0.00 2.66
655 658 2.610727 GCTGCTCAGTAGTTCCGAAAGT 60.611 50.000 0.00 0.00 0.00 2.66
656 659 1.996191 GCTGCTCAGTAGTTCCGAAAG 59.004 52.381 0.00 0.00 0.00 2.62
657 660 1.337823 GGCTGCTCAGTAGTTCCGAAA 60.338 52.381 0.00 0.00 0.00 3.46
658 661 0.246635 GGCTGCTCAGTAGTTCCGAA 59.753 55.000 0.00 0.00 0.00 4.30
659 662 1.890894 GGCTGCTCAGTAGTTCCGA 59.109 57.895 0.00 0.00 0.00 4.55
660 663 1.517257 CGGCTGCTCAGTAGTTCCG 60.517 63.158 0.00 0.00 0.00 4.30
661 664 0.458716 GTCGGCTGCTCAGTAGTTCC 60.459 60.000 0.00 0.00 0.00 3.62
662 665 0.243907 TGTCGGCTGCTCAGTAGTTC 59.756 55.000 0.00 0.00 0.00 3.01
663 666 0.038159 GTGTCGGCTGCTCAGTAGTT 60.038 55.000 0.00 0.00 0.00 2.24
664 667 1.587054 GTGTCGGCTGCTCAGTAGT 59.413 57.895 0.00 0.00 0.00 2.73
665 668 1.153745 GGTGTCGGCTGCTCAGTAG 60.154 63.158 0.00 0.00 0.00 2.57
666 669 2.646175 GGGTGTCGGCTGCTCAGTA 61.646 63.158 0.00 0.00 0.00 2.74
667 670 4.008933 GGGTGTCGGCTGCTCAGT 62.009 66.667 0.00 0.00 0.00 3.41
668 671 3.320879 ATGGGTGTCGGCTGCTCAG 62.321 63.158 0.00 0.00 0.00 3.35
669 672 3.321648 ATGGGTGTCGGCTGCTCA 61.322 61.111 0.00 0.00 0.00 4.26
670 673 2.821366 CATGGGTGTCGGCTGCTC 60.821 66.667 0.00 0.00 0.00 4.26
671 674 4.415150 CCATGGGTGTCGGCTGCT 62.415 66.667 2.85 0.00 0.00 4.24
676 679 4.402528 TTCGGCCATGGGTGTCGG 62.403 66.667 15.13 0.93 0.00 4.79
677 680 3.124921 GTTCGGCCATGGGTGTCG 61.125 66.667 15.13 0.22 0.00 4.35
678 681 0.965363 AATGTTCGGCCATGGGTGTC 60.965 55.000 15.13 0.00 0.00 3.67
679 682 0.965363 GAATGTTCGGCCATGGGTGT 60.965 55.000 15.13 0.00 0.00 4.16
680 683 1.809207 GAATGTTCGGCCATGGGTG 59.191 57.895 15.13 0.00 0.00 4.61
681 684 1.748879 CGAATGTTCGGCCATGGGT 60.749 57.895 15.13 0.00 46.30 4.51
682 685 3.110139 CGAATGTTCGGCCATGGG 58.890 61.111 15.13 0.00 46.30 4.00
691 694 4.595116 CTGGATCAAAGCATCGAATGTTC 58.405 43.478 0.00 0.00 0.00 3.18
692 695 3.181493 GCTGGATCAAAGCATCGAATGTT 60.181 43.478 13.25 0.00 40.52 2.71
693 696 2.357009 GCTGGATCAAAGCATCGAATGT 59.643 45.455 13.25 0.00 40.52 2.71
694 697 2.601504 CGCTGGATCAAAGCATCGAATG 60.602 50.000 17.02 0.00 40.86 2.67
695 698 1.600957 CGCTGGATCAAAGCATCGAAT 59.399 47.619 17.02 0.00 40.86 3.34
696 699 1.009078 CGCTGGATCAAAGCATCGAA 58.991 50.000 17.02 0.00 40.86 3.71
697 700 0.811219 CCGCTGGATCAAAGCATCGA 60.811 55.000 17.02 0.00 40.86 3.59
698 701 1.645455 CCGCTGGATCAAAGCATCG 59.355 57.895 17.02 3.81 40.86 3.84
699 702 1.358046 GCCGCTGGATCAAAGCATC 59.642 57.895 17.02 6.46 40.86 3.91
700 703 2.123428 GGCCGCTGGATCAAAGCAT 61.123 57.895 17.02 0.00 40.86 3.79
701 704 2.751436 GGCCGCTGGATCAAAGCA 60.751 61.111 17.02 0.00 40.86 3.91
702 705 3.880846 CGGCCGCTGGATCAAAGC 61.881 66.667 14.67 9.09 37.31 3.51
703 706 3.204827 CCGGCCGCTGGATCAAAG 61.205 66.667 22.85 0.00 29.82 2.77
715 718 4.660938 ACAAAGTGGAGGCCGGCC 62.661 66.667 39.29 39.29 0.00 6.13
716 719 3.365265 CACAAAGTGGAGGCCGGC 61.365 66.667 21.18 21.18 0.00 6.13
717 720 3.365265 GCACAAAGTGGAGGCCGG 61.365 66.667 0.00 0.00 33.64 6.13
718 721 3.365265 GGCACAAAGTGGAGGCCG 61.365 66.667 0.00 0.00 34.56 6.13
719 722 2.203480 TGGCACAAAGTGGAGGCC 60.203 61.111 0.00 0.00 44.82 5.19
730 733 1.002746 ACCGTACATGCATGGCACA 60.003 52.632 29.41 9.76 43.04 4.57
731 734 1.024046 TGACCGTACATGCATGGCAC 61.024 55.000 29.41 23.43 43.04 5.01
732 735 0.744057 CTGACCGTACATGCATGGCA 60.744 55.000 29.41 14.80 44.86 4.92
733 736 0.461870 TCTGACCGTACATGCATGGC 60.462 55.000 29.41 19.94 0.00 4.40
734 737 2.138320 GATCTGACCGTACATGCATGG 58.862 52.381 29.41 14.97 0.00 3.66
735 738 2.798847 CTGATCTGACCGTACATGCATG 59.201 50.000 25.09 25.09 0.00 4.06
736 739 2.432146 ACTGATCTGACCGTACATGCAT 59.568 45.455 6.60 0.00 0.00 3.96
737 740 1.824852 ACTGATCTGACCGTACATGCA 59.175 47.619 6.60 0.00 0.00 3.96
738 741 2.586258 ACTGATCTGACCGTACATGC 57.414 50.000 6.60 0.00 0.00 4.06
739 742 3.066760 TGCTACTGATCTGACCGTACATG 59.933 47.826 6.60 0.00 0.00 3.21
740 743 3.288092 TGCTACTGATCTGACCGTACAT 58.712 45.455 6.60 0.00 0.00 2.29
741 744 2.718563 TGCTACTGATCTGACCGTACA 58.281 47.619 6.60 0.00 0.00 2.90
742 745 3.607310 CGATGCTACTGATCTGACCGTAC 60.607 52.174 6.60 0.00 0.00 3.67
743 746 2.548480 CGATGCTACTGATCTGACCGTA 59.452 50.000 6.60 0.00 0.00 4.02
744 747 1.335182 CGATGCTACTGATCTGACCGT 59.665 52.381 6.60 0.00 0.00 4.83
745 748 1.335182 ACGATGCTACTGATCTGACCG 59.665 52.381 6.60 3.37 0.00 4.79
746 749 2.287909 GGACGATGCTACTGATCTGACC 60.288 54.545 6.60 0.00 0.00 4.02
747 750 2.359214 TGGACGATGCTACTGATCTGAC 59.641 50.000 6.60 0.00 0.00 3.51
748 751 2.654863 TGGACGATGCTACTGATCTGA 58.345 47.619 6.60 0.00 0.00 3.27
749 752 3.443099 TTGGACGATGCTACTGATCTG 57.557 47.619 0.00 0.00 0.00 2.90
750 753 3.195610 TGTTTGGACGATGCTACTGATCT 59.804 43.478 0.00 0.00 0.00 2.75
751 754 3.521560 TGTTTGGACGATGCTACTGATC 58.478 45.455 0.00 0.00 0.00 2.92
752 755 3.610040 TGTTTGGACGATGCTACTGAT 57.390 42.857 0.00 0.00 0.00 2.90
753 756 3.521560 GATGTTTGGACGATGCTACTGA 58.478 45.455 0.00 0.00 0.00 3.41
754 757 2.282555 CGATGTTTGGACGATGCTACTG 59.717 50.000 0.00 0.00 0.00 2.74
755 758 2.540515 CGATGTTTGGACGATGCTACT 58.459 47.619 0.00 0.00 0.00 2.57
756 759 1.593006 CCGATGTTTGGACGATGCTAC 59.407 52.381 0.00 0.00 0.00 3.58
757 760 1.934589 CCGATGTTTGGACGATGCTA 58.065 50.000 0.00 0.00 0.00 3.49
758 761 1.369091 GCCGATGTTTGGACGATGCT 61.369 55.000 0.00 0.00 0.00 3.79
759 762 1.062525 GCCGATGTTTGGACGATGC 59.937 57.895 0.00 0.00 0.00 3.91
760 763 0.374758 CAGCCGATGTTTGGACGATG 59.625 55.000 0.00 0.00 0.00 3.84
761 764 1.369091 GCAGCCGATGTTTGGACGAT 61.369 55.000 0.00 0.00 0.00 3.73
762 765 2.032634 GCAGCCGATGTTTGGACGA 61.033 57.895 0.00 0.00 0.00 4.20
763 766 2.324330 TGCAGCCGATGTTTGGACG 61.324 57.895 0.00 0.00 0.00 4.79
764 767 1.210155 GTGCAGCCGATGTTTGGAC 59.790 57.895 0.00 0.00 0.00 4.02
765 768 1.228094 TGTGCAGCCGATGTTTGGA 60.228 52.632 0.00 0.00 0.00 3.53
766 769 1.081242 GTGTGCAGCCGATGTTTGG 60.081 57.895 0.00 0.00 0.00 3.28
767 770 1.081242 GGTGTGCAGCCGATGTTTG 60.081 57.895 0.00 0.00 0.00 2.93
768 771 3.354678 GGTGTGCAGCCGATGTTT 58.645 55.556 0.00 0.00 0.00 2.83
783 786 2.953466 ATTGCTATACACACGACGGT 57.047 45.000 0.00 0.00 0.00 4.83
784 787 3.863424 AGAAATTGCTATACACACGACGG 59.137 43.478 0.00 0.00 0.00 4.79
785 788 4.798907 AGAGAAATTGCTATACACACGACG 59.201 41.667 0.00 0.00 0.00 5.12
786 789 6.750501 TGTAGAGAAATTGCTATACACACGAC 59.249 38.462 15.61 0.00 37.58 4.34
787 790 6.859017 TGTAGAGAAATTGCTATACACACGA 58.141 36.000 15.61 0.00 37.58 4.35
788 791 7.306807 CCATGTAGAGAAATTGCTATACACACG 60.307 40.741 20.70 12.97 43.05 4.49
789 792 7.495934 ACCATGTAGAGAAATTGCTATACACAC 59.504 37.037 20.70 0.00 43.05 3.82
790 793 7.564793 ACCATGTAGAGAAATTGCTATACACA 58.435 34.615 20.70 4.74 43.05 3.72
791 794 8.438676 AACCATGTAGAGAAATTGCTATACAC 57.561 34.615 20.70 0.00 43.05 2.90
792 795 9.109393 GAAACCATGTAGAGAAATTGCTATACA 57.891 33.333 20.59 20.59 43.99 2.29
793 796 8.276325 CGAAACCATGTAGAGAAATTGCTATAC 58.724 37.037 10.81 10.81 34.15 1.47
794 797 7.042051 GCGAAACCATGTAGAGAAATTGCTATA 60.042 37.037 0.00 0.00 0.00 1.31
795 798 6.238484 GCGAAACCATGTAGAGAAATTGCTAT 60.238 38.462 0.00 0.00 0.00 2.97
796 799 5.064707 GCGAAACCATGTAGAGAAATTGCTA 59.935 40.000 0.00 0.00 0.00 3.49
797 800 4.142600 GCGAAACCATGTAGAGAAATTGCT 60.143 41.667 0.00 0.00 0.00 3.91
798 801 4.098416 GCGAAACCATGTAGAGAAATTGC 58.902 43.478 0.00 0.00 0.00 3.56
799 802 5.551760 AGCGAAACCATGTAGAGAAATTG 57.448 39.130 0.00 0.00 0.00 2.32
800 803 6.170506 TGTAGCGAAACCATGTAGAGAAATT 58.829 36.000 0.00 0.00 0.00 1.82
801 804 5.730550 TGTAGCGAAACCATGTAGAGAAAT 58.269 37.500 0.00 0.00 0.00 2.17
802 805 5.142061 TGTAGCGAAACCATGTAGAGAAA 57.858 39.130 0.00 0.00 0.00 2.52
803 806 4.794278 TGTAGCGAAACCATGTAGAGAA 57.206 40.909 0.00 0.00 0.00 2.87
804 807 4.645136 AGATGTAGCGAAACCATGTAGAGA 59.355 41.667 0.00 0.00 0.00 3.10
805 808 4.938080 AGATGTAGCGAAACCATGTAGAG 58.062 43.478 0.00 0.00 0.00 2.43
806 809 4.645136 AGAGATGTAGCGAAACCATGTAGA 59.355 41.667 0.00 0.00 0.00 2.59
807 810 4.938080 AGAGATGTAGCGAAACCATGTAG 58.062 43.478 0.00 0.00 0.00 2.74
808 811 4.401202 TGAGAGATGTAGCGAAACCATGTA 59.599 41.667 0.00 0.00 0.00 2.29
809 812 3.195610 TGAGAGATGTAGCGAAACCATGT 59.804 43.478 0.00 0.00 0.00 3.21
810 813 3.785486 TGAGAGATGTAGCGAAACCATG 58.215 45.455 0.00 0.00 0.00 3.66
811 814 3.739519 GCTGAGAGATGTAGCGAAACCAT 60.740 47.826 0.00 0.00 0.00 3.55
812 815 2.417379 GCTGAGAGATGTAGCGAAACCA 60.417 50.000 0.00 0.00 0.00 3.67
813 816 2.197577 GCTGAGAGATGTAGCGAAACC 58.802 52.381 0.00 0.00 0.00 3.27
814 817 2.881074 TGCTGAGAGATGTAGCGAAAC 58.119 47.619 0.00 0.00 40.24 2.78
815 818 3.592898 TTGCTGAGAGATGTAGCGAAA 57.407 42.857 0.00 0.00 40.24 3.46
816 819 3.808466 ATTGCTGAGAGATGTAGCGAA 57.192 42.857 0.00 0.00 40.24 4.70
817 820 3.808466 AATTGCTGAGAGATGTAGCGA 57.192 42.857 0.00 0.00 40.24 4.93
818 821 4.118410 AGAAATTGCTGAGAGATGTAGCG 58.882 43.478 0.00 0.00 40.24 4.26
819 822 5.234757 CAGAGAAATTGCTGAGAGATGTAGC 59.765 44.000 0.00 0.00 37.93 3.58
820 823 6.256104 CACAGAGAAATTGCTGAGAGATGTAG 59.744 42.308 0.00 0.00 36.07 2.74
821 824 6.071165 TCACAGAGAAATTGCTGAGAGATGTA 60.071 38.462 0.00 0.00 36.07 2.29
822 825 4.936411 CACAGAGAAATTGCTGAGAGATGT 59.064 41.667 0.00 0.00 36.07 3.06
823 826 5.176592 TCACAGAGAAATTGCTGAGAGATG 58.823 41.667 0.00 0.00 36.07 2.90
824 827 5.187381 TCTCACAGAGAAATTGCTGAGAGAT 59.813 40.000 19.62 0.00 46.51 2.75
825 828 4.818642 CTCACAGAGAAATTGCTGAGAGA 58.181 43.478 17.72 4.23 46.19 3.10
826 829 4.818642 TCTCACAGAGAAATTGCTGAGAG 58.181 43.478 17.04 17.04 45.31 3.20
827 830 4.879197 TCTCACAGAGAAATTGCTGAGA 57.121 40.909 0.00 0.00 35.59 3.27
828 831 5.292345 CAGATCTCACAGAGAAATTGCTGAG 59.708 44.000 0.00 0.00 42.27 3.35
829 832 5.176592 CAGATCTCACAGAGAAATTGCTGA 58.823 41.667 0.00 0.00 42.27 4.26
830 833 4.936411 ACAGATCTCACAGAGAAATTGCTG 59.064 41.667 0.00 0.00 42.27 4.41
831 834 5.046448 AGACAGATCTCACAGAGAAATTGCT 60.046 40.000 0.29 0.00 42.27 3.91
832 835 5.177326 AGACAGATCTCACAGAGAAATTGC 58.823 41.667 0.29 0.00 42.27 3.56
851 854 2.438392 TCCTAGGAGATGTAGCGAGACA 59.562 50.000 7.62 0.00 0.00 3.41
921 955 6.543831 CCGAGGTCAAAATGGATTTAGATCTT 59.456 38.462 0.00 0.00 32.66 2.40
1021 1064 1.613317 ATCGGATCGAACCCAGTGCA 61.613 55.000 6.09 0.00 39.99 4.57
1089 1132 6.547510 AGCAAGGAAAACACTGATTAGAACTT 59.452 34.615 0.00 0.00 0.00 2.66
1454 1518 5.065218 AGCGGATGTTGTTTGAGAATGTATC 59.935 40.000 0.00 0.00 0.00 2.24
1497 1561 1.648467 GGCGCTGGATTGACAACTCC 61.648 60.000 7.64 8.78 0.00 3.85
1508 1572 0.323087 TACACTAGACTGGCGCTGGA 60.323 55.000 7.64 0.00 0.00 3.86
1606 1670 5.106157 GGGGTTGAGAACATACATCTTGTTG 60.106 44.000 0.00 0.00 37.43 3.33
1609 1673 3.623060 CGGGGTTGAGAACATACATCTTG 59.377 47.826 0.00 0.00 0.00 3.02
1622 1686 2.672996 CCTTGTGGCGGGGTTGAG 60.673 66.667 0.00 0.00 0.00 3.02
1699 1763 0.519961 GTCCGAAACCAACATTCCCG 59.480 55.000 0.00 0.00 0.00 5.14
1720 1784 2.355363 TTGTTCGTGCGAGGGTCG 60.355 61.111 0.00 0.00 43.89 4.79
1727 1791 1.070843 CACCTTGTACTTGTTCGTGCG 60.071 52.381 0.00 0.00 0.00 5.34
1732 1796 4.035208 CACTGAACCACCTTGTACTTGTTC 59.965 45.833 0.00 0.00 34.25 3.18
1759 1823 1.748879 ATTGTCCGTGGAATGGCGG 60.749 57.895 0.00 0.00 44.89 6.13
1787 1851 0.253044 TCCATTCCAGTGCTGTAGCC 59.747 55.000 0.80 0.00 41.18 3.93
1813 1877 1.398390 GAACCGCTGCTTCCTATTGTG 59.602 52.381 0.00 0.00 0.00 3.33
1960 2033 2.669569 TGCAGGCAGAACCGAAGC 60.670 61.111 0.00 0.00 46.52 3.86
2011 2084 2.113774 TGGTCAAGTGCAGGGCAG 59.886 61.111 0.00 0.00 40.08 4.85
2020 2093 2.093711 GGCAAAGTTTTGGTGGTCAAGT 60.094 45.455 6.72 0.00 38.57 3.16
2032 2105 4.520492 CCTAGTTCACTCATGGCAAAGTTT 59.480 41.667 3.39 0.00 0.00 2.66
2055 2128 1.103398 AGCAAGGCACAGTTCACCAC 61.103 55.000 0.00 0.00 0.00 4.16
2094 2167 3.552875 CTTGCCATCCAGATCACAATCT 58.447 45.455 0.00 0.00 43.24 2.40
2096 2169 2.029623 GCTTGCCATCCAGATCACAAT 58.970 47.619 0.00 0.00 0.00 2.71
2098 2171 0.745486 CGCTTGCCATCCAGATCACA 60.745 55.000 0.00 0.00 0.00 3.58
2111 2184 1.162800 GGATCCTCACCATCGCTTGC 61.163 60.000 3.84 0.00 0.00 4.01
2113 2186 1.043116 TCGGATCCTCACCATCGCTT 61.043 55.000 10.75 0.00 0.00 4.68
2220 2293 5.041940 GGAAGTTGTACCGTGAGATCATAC 58.958 45.833 0.00 0.00 0.00 2.39
2444 2528 9.950496 GAGGATAATACTTCCATTCATACATGT 57.050 33.333 2.69 2.69 35.59 3.21
2447 2531 9.607333 AGAGAGGATAATACTTCCATTCATACA 57.393 33.333 0.00 0.00 35.59 2.29
2484 2568 9.950496 GAGGATAATACTTCCATTCATACATGT 57.050 33.333 2.69 2.69 35.59 3.21
2487 2571 9.607333 AGAGAGGATAATACTTCCATTCATACA 57.393 33.333 0.00 0.00 35.59 2.29
2516 2600 9.829507 AACTTCCATTCATACATGTTTGAAAAA 57.170 25.926 27.92 21.31 34.98 1.94
2517 2601 9.258826 CAACTTCCATTCATACATGTTTGAAAA 57.741 29.630 27.92 19.19 34.98 2.29
2518 2602 8.420222 ACAACTTCCATTCATACATGTTTGAAA 58.580 29.630 27.92 14.33 34.98 2.69
2519 2603 7.950512 ACAACTTCCATTCATACATGTTTGAA 58.049 30.769 26.87 26.87 35.59 2.69
2520 2604 7.523293 ACAACTTCCATTCATACATGTTTGA 57.477 32.000 14.12 14.12 0.00 2.69
2579 2663 2.854185 GCCGCTCAAACATTTATTCAGC 59.146 45.455 0.00 0.00 0.00 4.26
2653 2737 4.635324 CACTGGTTTTTGTCCATTTTGCTT 59.365 37.500 0.00 0.00 34.26 3.91
2683 2767 6.048509 ACTTGTGATGGGAAATTTGTTGTTC 58.951 36.000 0.00 0.00 0.00 3.18
2718 2802 9.878737 AGAGCTAATAATAACCTCCTGTAGTAA 57.121 33.333 0.00 0.00 0.00 2.24
2844 2928 8.620533 AATAAGCAAGATTATCGCTTGTTTTC 57.379 30.769 14.57 0.00 42.21 2.29
2922 3015 3.599584 CAGCTGGGCACTGGATTG 58.400 61.111 5.57 0.00 0.00 2.67
2942 3035 1.717645 GAAGTTGCAGCGCATTCAAAG 59.282 47.619 11.47 0.00 38.76 2.77
3005 3099 3.496155 GTCACTTAAGCTTGAAGCATGC 58.504 45.455 20.45 10.51 45.56 4.06
3019 3113 3.709653 AGAAACTGGTCACTGGTCACTTA 59.290 43.478 0.00 0.00 0.00 2.24
3021 3115 2.103263 GAGAAACTGGTCACTGGTCACT 59.897 50.000 0.00 0.00 0.00 3.41
3022 3116 2.103263 AGAGAAACTGGTCACTGGTCAC 59.897 50.000 0.00 0.00 0.00 3.67
3023 3117 2.103094 CAGAGAAACTGGTCACTGGTCA 59.897 50.000 0.00 0.00 42.39 4.02
3024 3118 2.760374 CAGAGAAACTGGTCACTGGTC 58.240 52.381 0.00 0.00 42.39 4.02
3025 3119 1.202698 GCAGAGAAACTGGTCACTGGT 60.203 52.381 0.00 0.00 45.82 4.00
3026 3120 1.517242 GCAGAGAAACTGGTCACTGG 58.483 55.000 0.00 0.00 45.82 4.00
3099 3203 4.348863 AATGTTGCTTACAATTTGGCCA 57.651 36.364 0.00 0.00 40.89 5.36
3152 3256 7.787904 TGGTATGTGGTAGACTAGGAATATTGT 59.212 37.037 0.00 0.00 0.00 2.71
3164 3268 4.100963 TCATGATGGTGGTATGTGGTAGAC 59.899 45.833 0.00 0.00 0.00 2.59
3180 3284 8.857216 GTTGAGAAGCTTGTTAAATTCATGATG 58.143 33.333 2.10 0.00 0.00 3.07
3227 3331 4.885325 TGGTGGTGTTTTCTTCCTTAGAAC 59.115 41.667 0.00 0.00 42.50 3.01
3253 3357 3.543680 TTCTGGAACTGCTACTATGGC 57.456 47.619 0.00 0.00 0.00 4.40
3312 3416 0.546598 CCTTATCTTTGGGGACGGCT 59.453 55.000 0.00 0.00 0.00 5.52
3331 3435 6.299141 TCCTATGGTTATCTTTCAATGGAGC 58.701 40.000 0.00 0.00 0.00 4.70
3353 3457 7.050377 TGATTATGTTGAGAGGATTCAGTTCC 58.950 38.462 0.00 0.00 35.90 3.62
3355 3459 7.718753 GGATGATTATGTTGAGAGGATTCAGTT 59.281 37.037 0.00 0.00 0.00 3.16
3357 3461 7.222161 TGGATGATTATGTTGAGAGGATTCAG 58.778 38.462 0.00 0.00 0.00 3.02
3358 3462 7.140522 TGGATGATTATGTTGAGAGGATTCA 57.859 36.000 0.00 0.00 0.00 2.57
3359 3463 7.336427 GGATGGATGATTATGTTGAGAGGATTC 59.664 40.741 0.00 0.00 0.00 2.52
3360 3464 7.173722 GGATGGATGATTATGTTGAGAGGATT 58.826 38.462 0.00 0.00 0.00 3.01
3361 3465 6.273965 TGGATGGATGATTATGTTGAGAGGAT 59.726 38.462 0.00 0.00 0.00 3.24
3362 3466 5.608015 TGGATGGATGATTATGTTGAGAGGA 59.392 40.000 0.00 0.00 0.00 3.71
3363 3467 5.704515 GTGGATGGATGATTATGTTGAGAGG 59.295 44.000 0.00 0.00 0.00 3.69
3364 3468 5.704515 GGTGGATGGATGATTATGTTGAGAG 59.295 44.000 0.00 0.00 0.00 3.20
3365 3469 5.456619 GGGTGGATGGATGATTATGTTGAGA 60.457 44.000 0.00 0.00 0.00 3.27
3366 3470 4.763793 GGGTGGATGGATGATTATGTTGAG 59.236 45.833 0.00 0.00 0.00 3.02
3367 3471 4.728772 GGGTGGATGGATGATTATGTTGA 58.271 43.478 0.00 0.00 0.00 3.18
3368 3472 3.503363 CGGGTGGATGGATGATTATGTTG 59.497 47.826 0.00 0.00 0.00 3.33
3369 3473 3.138283 ACGGGTGGATGGATGATTATGTT 59.862 43.478 0.00 0.00 0.00 2.71
3370 3474 2.711009 ACGGGTGGATGGATGATTATGT 59.289 45.455 0.00 0.00 0.00 2.29
3371 3475 3.423539 ACGGGTGGATGGATGATTATG 57.576 47.619 0.00 0.00 0.00 1.90
3372 3476 3.244911 GGAACGGGTGGATGGATGATTAT 60.245 47.826 0.00 0.00 0.00 1.28
3373 3477 2.105821 GGAACGGGTGGATGGATGATTA 59.894 50.000 0.00 0.00 0.00 1.75
3374 3478 1.133792 GGAACGGGTGGATGGATGATT 60.134 52.381 0.00 0.00 0.00 2.57
3375 3479 0.474184 GGAACGGGTGGATGGATGAT 59.526 55.000 0.00 0.00 0.00 2.45
3376 3480 1.632018 GGGAACGGGTGGATGGATGA 61.632 60.000 0.00 0.00 0.00 2.92
3377 3481 1.152963 GGGAACGGGTGGATGGATG 60.153 63.158 0.00 0.00 0.00 3.51
3378 3482 2.383601 GGGGAACGGGTGGATGGAT 61.384 63.158 0.00 0.00 0.00 3.41
3379 3483 3.012722 GGGGAACGGGTGGATGGA 61.013 66.667 0.00 0.00 0.00 3.41
3380 3484 3.015145 AGGGGAACGGGTGGATGG 61.015 66.667 0.00 0.00 0.00 3.51
3381 3485 2.590092 GAGGGGAACGGGTGGATG 59.410 66.667 0.00 0.00 0.00 3.51
3382 3486 2.691252 GGAGGGGAACGGGTGGAT 60.691 66.667 0.00 0.00 0.00 3.41
3388 3492 3.459063 GACTCGGGAGGGGAACGG 61.459 72.222 0.00 0.00 31.41 4.44
3389 3493 3.823330 CGACTCGGGAGGGGAACG 61.823 72.222 0.00 0.00 31.41 3.95
3390 3494 4.144703 GCGACTCGGGAGGGGAAC 62.145 72.222 0.00 0.00 31.41 3.62
3415 3519 4.772687 GGGTTTCCTCCCGGTCGC 62.773 72.222 0.00 0.00 37.93 5.19
3421 3525 2.908796 CGGCTAGGGTTTCCTCCC 59.091 66.667 0.00 0.00 43.66 4.30
3422 3526 2.189784 GCGGCTAGGGTTTCCTCC 59.810 66.667 0.00 0.00 43.66 4.30
3423 3527 2.202892 CGCGGCTAGGGTTTCCTC 60.203 66.667 0.00 0.00 43.66 3.71
3424 3528 3.782443 CCGCGGCTAGGGTTTCCT 61.782 66.667 14.67 0.00 46.96 3.36
3450 3554 2.367107 GGGAAGAGGGAGGGGGAC 60.367 72.222 0.00 0.00 0.00 4.46
3451 3555 3.707189 GGGGAAGAGGGAGGGGGA 61.707 72.222 0.00 0.00 0.00 4.81
3452 3556 3.711782 AGGGGAAGAGGGAGGGGG 61.712 72.222 0.00 0.00 0.00 5.40
3453 3557 2.040359 GAGGGGAAGAGGGAGGGG 60.040 72.222 0.00 0.00 0.00 4.79
3454 3558 1.074850 GAGAGGGGAAGAGGGAGGG 60.075 68.421 0.00 0.00 0.00 4.30
3455 3559 1.074850 GGAGAGGGGAAGAGGGAGG 60.075 68.421 0.00 0.00 0.00 4.30
3456 3560 1.074850 GGGAGAGGGGAAGAGGGAG 60.075 68.421 0.00 0.00 0.00 4.30
3457 3561 2.647949 GGGGAGAGGGGAAGAGGGA 61.648 68.421 0.00 0.00 0.00 4.20
3458 3562 2.040359 GGGGAGAGGGGAAGAGGG 60.040 72.222 0.00 0.00 0.00 4.30
3459 3563 1.074850 GAGGGGAGAGGGGAAGAGG 60.075 68.421 0.00 0.00 0.00 3.69
3460 3564 1.456705 CGAGGGGAGAGGGGAAGAG 60.457 68.421 0.00 0.00 0.00 2.85
3461 3565 2.226149 GACGAGGGGAGAGGGGAAGA 62.226 65.000 0.00 0.00 0.00 2.87
3462 3566 1.758906 GACGAGGGGAGAGGGGAAG 60.759 68.421 0.00 0.00 0.00 3.46
3463 3567 2.363361 GACGAGGGGAGAGGGGAA 59.637 66.667 0.00 0.00 0.00 3.97
3464 3568 4.124943 CGACGAGGGGAGAGGGGA 62.125 72.222 0.00 0.00 0.00 4.81
3526 3630 4.452733 GACAGGAACTCCCCGCCG 62.453 72.222 0.00 0.00 34.60 6.46
3527 3631 4.097361 GGACAGGAACTCCCCGCC 62.097 72.222 0.00 0.00 34.60 6.13
3528 3632 4.097361 GGGACAGGAACTCCCCGC 62.097 72.222 0.00 0.00 41.70 6.13
3531 3635 0.978667 GAGAGGGGACAGGAACTCCC 60.979 65.000 0.00 0.00 46.32 4.30
3532 3636 1.324005 CGAGAGGGGACAGGAACTCC 61.324 65.000 0.00 0.00 34.60 3.85
3533 3637 1.950973 GCGAGAGGGGACAGGAACTC 61.951 65.000 0.00 0.00 34.60 3.01
3534 3638 1.985116 GCGAGAGGGGACAGGAACT 60.985 63.158 0.00 0.00 43.88 3.01
3535 3639 2.579738 GCGAGAGGGGACAGGAAC 59.420 66.667 0.00 0.00 0.00 3.62
3536 3640 3.068691 CGCGAGAGGGGACAGGAA 61.069 66.667 0.00 0.00 40.85 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.