Multiple sequence alignment - TraesCS5B01G198800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G198800 chr5B 100.000 8043 0 0 1 8043 358460710 358452668 0 14853
1 TraesCS5B01G198800 chr5B 93.298 2850 165 21 2518 5362 197389504 197392332 0 4181
2 TraesCS5B01G198800 chr5B 96.527 2390 70 9 5657 8043 519960118 519957739 0 3941
3 TraesCS5B01G198800 chr7B 92.992 3439 192 23 4635 8043 19763461 19766880 0 4970
4 TraesCS5B01G198800 chr2B 94.469 2947 130 13 2518 5458 35812758 35809839 0 4508
5 TraesCS5B01G198800 chr2B 96.553 2524 79 6 1 2517 623329489 623326967 0 4172
6 TraesCS5B01G198800 chr2B 95.842 2525 96 7 1 2517 514557015 514554492 0 4072
7 TraesCS5B01G198800 chr2B 96.861 2389 61 7 5657 8043 35777374 35774998 0 3984
8 TraesCS5B01G198800 chr2B 96.606 1827 56 4 2518 4340 623327084 623325260 0 3025
9 TraesCS5B01G198800 chr2B 95.767 1819 72 3 2518 4333 35780281 35778465 0 2928
10 TraesCS5B01G198800 chr2B 95.874 1745 68 4 3716 5458 123381886 123383628 0 2820
11 TraesCS5B01G198800 chr2B 95.390 1757 77 4 3703 5458 514553346 514551593 0 2793
12 TraesCS5B01G198800 chr2B 90.297 1278 104 14 4635 5897 75310350 75309078 0 1655
13 TraesCS5B01G198800 chr2B 90.055 1277 109 14 4635 5897 209875371 209874099 0 1639
14 TraesCS5B01G198800 chr2B 90.094 1272 110 11 4635 5897 205283897 205282633 0 1637
15 TraesCS5B01G198800 chr2B 90.016 1272 111 13 4635 5897 701270362 701269098 0 1631
16 TraesCS5B01G198800 chr1B 96.358 2526 80 10 1 2517 413051772 413054294 0 4145
17 TraesCS5B01G198800 chr1B 91.477 2980 210 35 2519 5491 274296489 274299431 0 4056
18 TraesCS5B01G198800 chr1B 96.904 2390 60 9 5657 8043 575065551 575063173 0 3991
19 TraesCS5B01G198800 chr1B 95.985 2391 83 8 5657 8043 84520579 84518198 0 3871
20 TraesCS5B01G198800 chr1B 97.355 1777 41 4 2518 4291 413054177 413055950 0 3016
21 TraesCS5B01G198800 chr2A 96.193 2522 89 5 1 2517 384174895 384172376 0 4119
22 TraesCS5B01G198800 chr5A 96.157 2524 88 7 1 2517 141902091 141904612 0 4115
23 TraesCS5B01G198800 chr7A 95.876 2522 98 4 1 2517 245449800 245447280 0 4076
24 TraesCS5B01G198800 chr3A 95.838 2523 98 5 1 2517 662010413 662007892 0 4071
25 TraesCS5B01G198800 chr6B 95.802 2525 95 7 1 2517 9713703 9716224 0 4065
26 TraesCS5B01G198800 chr6A 95.799 2523 97 5 1 2517 158983450 158980931 0 4063
27 TraesCS5B01G198800 chr4B 92.248 2851 190 21 2519 5362 425955576 425952750 0 4012
28 TraesCS5B01G198800 chr4B 92.997 2756 173 17 2528 5279 425925523 425922784 0 4002
29 TraesCS5B01G198800 chr4B 96.275 2389 76 9 5657 8043 199609042 199611419 0 3906
30 TraesCS5B01G198800 chr4B 95.814 1744 69 4 3717 5458 89440776 89439035 0 2813
31 TraesCS5B01G198800 chr3B 96.824 2393 57 12 5657 8043 646356288 646358667 0 3980
32 TraesCS5B01G198800 chr3B 96.817 2388 64 8 5657 8043 656107774 656105398 0 3978
33 TraesCS5B01G198800 chr3B 96.360 2390 70 10 5657 8043 281591276 281588901 0 3916
34 TraesCS5B01G198800 chr3B 94.600 2185 113 5 3716 5897 420622219 420624401 0 3376
35 TraesCS5B01G198800 chr3B 95.876 1746 68 4 3716 5458 656109516 656107772 0 2822
36 TraesCS5B01G198800 chr3B 95.068 1703 74 8 2518 4215 656110796 656109099 0 2671
37 TraesCS5B01G198800 chr3B 94.532 1646 88 2 4253 5897 420618792 420620436 0 2540
38 TraesCS5B01G198800 chr3B 92.411 1265 94 2 4635 5897 545971925 545970661 0 1803
39 TraesCS5B01G198800 chr3B 92.241 1263 74 7 4635 5897 420616492 420617730 0 1768


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G198800 chr5B 358452668 358460710 8042 True 14853.000000 14853 100.000000 1 8043 1 chr5B.!!$R1 8042
1 TraesCS5B01G198800 chr5B 197389504 197392332 2828 False 4181.000000 4181 93.298000 2518 5362 1 chr5B.!!$F1 2844
2 TraesCS5B01G198800 chr5B 519957739 519960118 2379 True 3941.000000 3941 96.527000 5657 8043 1 chr5B.!!$R2 2386
3 TraesCS5B01G198800 chr7B 19763461 19766880 3419 False 4970.000000 4970 92.992000 4635 8043 1 chr7B.!!$F1 3408
4 TraesCS5B01G198800 chr2B 35809839 35812758 2919 True 4508.000000 4508 94.469000 2518 5458 1 chr2B.!!$R1 2940
5 TraesCS5B01G198800 chr2B 623325260 623329489 4229 True 3598.500000 4172 96.579500 1 4340 2 chr2B.!!$R8 4339
6 TraesCS5B01G198800 chr2B 35774998 35780281 5283 True 3456.000000 3984 96.314000 2518 8043 2 chr2B.!!$R6 5525
7 TraesCS5B01G198800 chr2B 514551593 514557015 5422 True 3432.500000 4072 95.616000 1 5458 2 chr2B.!!$R7 5457
8 TraesCS5B01G198800 chr2B 123381886 123383628 1742 False 2820.000000 2820 95.874000 3716 5458 1 chr2B.!!$F1 1742
9 TraesCS5B01G198800 chr2B 75309078 75310350 1272 True 1655.000000 1655 90.297000 4635 5897 1 chr2B.!!$R2 1262
10 TraesCS5B01G198800 chr2B 209874099 209875371 1272 True 1639.000000 1639 90.055000 4635 5897 1 chr2B.!!$R4 1262
11 TraesCS5B01G198800 chr2B 205282633 205283897 1264 True 1637.000000 1637 90.094000 4635 5897 1 chr2B.!!$R3 1262
12 TraesCS5B01G198800 chr2B 701269098 701270362 1264 True 1631.000000 1631 90.016000 4635 5897 1 chr2B.!!$R5 1262
13 TraesCS5B01G198800 chr1B 274296489 274299431 2942 False 4056.000000 4056 91.477000 2519 5491 1 chr1B.!!$F1 2972
14 TraesCS5B01G198800 chr1B 575063173 575065551 2378 True 3991.000000 3991 96.904000 5657 8043 1 chr1B.!!$R2 2386
15 TraesCS5B01G198800 chr1B 84518198 84520579 2381 True 3871.000000 3871 95.985000 5657 8043 1 chr1B.!!$R1 2386
16 TraesCS5B01G198800 chr1B 413051772 413055950 4178 False 3580.500000 4145 96.856500 1 4291 2 chr1B.!!$F2 4290
17 TraesCS5B01G198800 chr2A 384172376 384174895 2519 True 4119.000000 4119 96.193000 1 2517 1 chr2A.!!$R1 2516
18 TraesCS5B01G198800 chr5A 141902091 141904612 2521 False 4115.000000 4115 96.157000 1 2517 1 chr5A.!!$F1 2516
19 TraesCS5B01G198800 chr7A 245447280 245449800 2520 True 4076.000000 4076 95.876000 1 2517 1 chr7A.!!$R1 2516
20 TraesCS5B01G198800 chr3A 662007892 662010413 2521 True 4071.000000 4071 95.838000 1 2517 1 chr3A.!!$R1 2516
21 TraesCS5B01G198800 chr6B 9713703 9716224 2521 False 4065.000000 4065 95.802000 1 2517 1 chr6B.!!$F1 2516
22 TraesCS5B01G198800 chr6A 158980931 158983450 2519 True 4063.000000 4063 95.799000 1 2517 1 chr6A.!!$R1 2516
23 TraesCS5B01G198800 chr4B 425952750 425955576 2826 True 4012.000000 4012 92.248000 2519 5362 1 chr4B.!!$R3 2843
24 TraesCS5B01G198800 chr4B 425922784 425925523 2739 True 4002.000000 4002 92.997000 2528 5279 1 chr4B.!!$R2 2751
25 TraesCS5B01G198800 chr4B 199609042 199611419 2377 False 3906.000000 3906 96.275000 5657 8043 1 chr4B.!!$F1 2386
26 TraesCS5B01G198800 chr4B 89439035 89440776 1741 True 2813.000000 2813 95.814000 3717 5458 1 chr4B.!!$R1 1741
27 TraesCS5B01G198800 chr3B 646356288 646358667 2379 False 3980.000000 3980 96.824000 5657 8043 1 chr3B.!!$F1 2386
28 TraesCS5B01G198800 chr3B 281588901 281591276 2375 True 3916.000000 3916 96.360000 5657 8043 1 chr3B.!!$R1 2386
29 TraesCS5B01G198800 chr3B 656105398 656110796 5398 True 3157.000000 3978 95.920333 2518 8043 3 chr3B.!!$R3 5525
30 TraesCS5B01G198800 chr3B 420616492 420624401 7909 False 2561.333333 3376 93.791000 3716 5897 3 chr3B.!!$F2 2181
31 TraesCS5B01G198800 chr3B 545970661 545971925 1264 True 1803.000000 1803 92.411000 4635 5897 1 chr3B.!!$R2 1262

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
916 927 1.195115 CATCTCTCCCTCGTTCCCAA 58.805 55.000 0.00 0.00 0.00 4.12 F
1149 1161 0.107945 GCAAGGAGACGCTGGAGATT 60.108 55.000 0.00 0.00 0.00 2.40 F
1251 1263 0.178301 TCGGTGTTGGTGTGCACTAA 59.822 50.000 19.41 7.97 36.03 2.24 F
2168 2184 0.464452 GGAGAGTTCCATACACCGGG 59.536 60.000 6.32 0.00 43.45 5.73 F
2408 2425 2.289444 CGGGAGGCTGAAAACTTCTACA 60.289 50.000 0.00 0.00 0.00 2.74 F
3435 3461 1.071699 GGACTAAACCCAGAGTGCACA 59.928 52.381 21.04 0.00 34.44 4.57 F
5159 6702 0.879400 GCTGGAGATCATCTGCACCG 60.879 60.000 4.43 0.00 39.98 4.94 F
6641 8203 0.603975 GCGCCTCAAAGACTTCCTGT 60.604 55.000 0.00 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2438 2455 0.678395 AGGCAGGCTCTGATGTATCG 59.322 55.000 6.40 0.0 32.44 2.92 R
2733 2750 1.600485 ACGAAGCTACCAAACCAAACG 59.400 47.619 0.00 0.0 0.00 3.60 R
3124 3143 2.257207 TGACTCCTCCAGTAACTTGGG 58.743 52.381 0.00 0.0 38.81 4.12 R
3316 3338 1.681793 ACCTGAGCGCTTATACACGAT 59.318 47.619 13.26 0.0 0.00 3.73 R
3461 3487 2.196925 CGGCCCAGATAGCTCGTCT 61.197 63.158 0.00 0.0 0.00 4.18 R
5191 6734 0.758123 CTCCCTTCATCCTGAGCCTC 59.242 60.000 0.00 0.0 0.00 4.70 R
6645 8207 5.925969 CCAACAAATGTGTACAATTTCTCCC 59.074 40.000 0.00 0.0 36.80 4.30 R
7608 9217 2.281517 CCGTGTGTTCAACTGTACCAA 58.718 47.619 0.00 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
212 218 1.840737 ACTCTCAGTCGGCAGTACAT 58.159 50.000 0.00 0.00 0.00 2.29
524 535 6.533730 TCAATTACACTTCAATCACCAGTCT 58.466 36.000 0.00 0.00 0.00 3.24
916 927 1.195115 CATCTCTCCCTCGTTCCCAA 58.805 55.000 0.00 0.00 0.00 4.12
973 984 2.477176 CCTCCAGCGTCTCTCTCCG 61.477 68.421 0.00 0.00 0.00 4.63
1107 1118 1.372499 GCGCGAGTACACCAGAACA 60.372 57.895 12.10 0.00 0.00 3.18
1149 1161 0.107945 GCAAGGAGACGCTGGAGATT 60.108 55.000 0.00 0.00 0.00 2.40
1236 1248 0.453390 GGTTTCGTAGGATCGTCGGT 59.547 55.000 0.00 0.00 0.00 4.69
1251 1263 0.178301 TCGGTGTTGGTGTGCACTAA 59.822 50.000 19.41 7.97 36.03 2.24
1360 1373 4.220382 CCACAAAATGGTGAGCAATCCTAA 59.780 41.667 0.00 0.00 44.46 2.69
1591 1605 7.431249 TGAAGTTGATCGACTAGTGTAGTTTT 58.569 34.615 16.19 0.00 39.59 2.43
1599 1613 7.689953 TCGACTAGTGTAGTTTTTGAAGTTC 57.310 36.000 0.00 0.00 39.59 3.01
1954 1970 8.932963 CATCGCTTGTAAAACAAAACAAAAATC 58.067 29.630 0.00 0.00 37.69 2.17
2068 2084 2.166459 TGTTCACATTTGCCGGTTTCAA 59.834 40.909 1.90 0.00 0.00 2.69
2141 2157 4.023279 CCCAACAAGTTCATCGACATTCAA 60.023 41.667 0.00 0.00 0.00 2.69
2168 2184 0.464452 GGAGAGTTCCATACACCGGG 59.536 60.000 6.32 0.00 43.45 5.73
2249 2266 4.319766 GCATGAAGAACAAGATCAACACGT 60.320 41.667 0.00 0.00 0.00 4.49
2408 2425 2.289444 CGGGAGGCTGAAAACTTCTACA 60.289 50.000 0.00 0.00 0.00 2.74
2617 2634 5.175673 GTGCTTGCCTTTTATCTTGTTGTTC 59.824 40.000 0.00 0.00 0.00 3.18
3124 3143 8.560374 ACAAGAACTAGAACAAAAAGTATCAGC 58.440 33.333 0.00 0.00 0.00 4.26
3316 3338 3.609853 GTCAAGAGAGAGAGAGAGAGCA 58.390 50.000 0.00 0.00 0.00 4.26
3390 3416 3.610911 GGCTGTGCTTATAAACAGGTCT 58.389 45.455 15.74 0.00 43.29 3.85
3435 3461 1.071699 GGACTAAACCCAGAGTGCACA 59.928 52.381 21.04 0.00 34.44 4.57
4228 4559 2.727123 AATCTGTCCACACCACAACA 57.273 45.000 0.00 0.00 0.00 3.33
4622 6145 3.701542 ACATCACAGATCCATACGTCACT 59.298 43.478 0.00 0.00 0.00 3.41
4657 6180 2.045708 GCCATCATCACCACCGCAA 61.046 57.895 0.00 0.00 0.00 4.85
4661 6184 2.019249 CATCATCACCACCGCAAAGAT 58.981 47.619 0.00 0.00 0.00 2.40
4711 6234 3.290308 ACAGCTTGACAAGACTAGTCG 57.710 47.619 19.51 6.73 38.83 4.18
5159 6702 0.879400 GCTGGAGATCATCTGCACCG 60.879 60.000 4.43 0.00 39.98 4.94
5191 6734 1.006805 GGCCGACGAGATGATGAGG 60.007 63.158 0.00 0.00 0.00 3.86
5373 6917 3.624777 CAATCCTACTCATTTGCCCTGT 58.375 45.455 0.00 0.00 0.00 4.00
5385 6929 7.784550 ACTCATTTGCCCTGTATATGGTTTATT 59.215 33.333 0.00 0.00 0.00 1.40
5433 6978 8.482128 TGAAATTTTAATCACACTTGTTTCCCT 58.518 29.630 0.00 0.00 0.00 4.20
5444 6989 7.233962 TCACACTTGTTTCCCTACTAGATGTAA 59.766 37.037 0.00 0.00 0.00 2.41
5499 7046 8.581057 ACTGCATTTTCTCAAGTAGATATACG 57.419 34.615 0.00 0.00 33.05 3.06
6044 7596 4.078363 AGTTACATGCATTTCCGAAACG 57.922 40.909 0.00 0.00 0.00 3.60
6111 7666 4.346734 AGCATTCTGAACTTTATGCACG 57.653 40.909 13.52 0.00 44.38 5.34
6155 7711 9.787532 GATGTACTAGCATAGATTCTGATCTTC 57.212 37.037 0.00 0.00 42.77 2.87
6641 8203 0.603975 GCGCCTCAAAGACTTCCTGT 60.604 55.000 0.00 0.00 0.00 4.00
6645 8207 1.271597 CCTCAAAGACTTCCTGTGGGG 60.272 57.143 0.00 0.00 44.15 4.96
7090 8666 5.234752 CAGCTACCTTATGTTGTGTGTGTA 58.765 41.667 0.00 0.00 0.00 2.90
7095 8671 7.148689 GCTACCTTATGTTGTGTGTGTACTTAC 60.149 40.741 0.00 0.00 0.00 2.34
7098 8674 7.869429 ACCTTATGTTGTGTGTGTACTTACTAC 59.131 37.037 0.00 0.00 0.00 2.73
7127 8703 7.542890 TGTTTCAGATTTGTAGTTTGCTTTCA 58.457 30.769 0.00 0.00 0.00 2.69
7303 8906 2.093500 ACGCAGCAATAGTCATGGAGAA 60.093 45.455 0.00 0.00 0.00 2.87
7363 8969 4.609301 TGGCAGACTAAATAAAGGCCAAT 58.391 39.130 5.01 0.00 46.01 3.16
7608 9217 5.485708 ACTAGCATCCTAGGACTGAAAGTTT 59.514 40.000 15.42 0.00 45.04 2.66
7865 9487 7.665080 AAGTTCGACAAAAAGAGAAAAATCG 57.335 32.000 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
212 218 7.883833 TGGTGTGTTTGTTATTACTATGCCTTA 59.116 33.333 0.00 0.00 0.00 2.69
524 535 3.977134 ACTCCTCTACTGTCGTACTCA 57.023 47.619 0.00 0.00 0.00 3.41
617 628 4.555262 CATTTTACTGTGGCACCGATTTT 58.445 39.130 16.26 0.00 0.00 1.82
618 629 3.613910 GCATTTTACTGTGGCACCGATTT 60.614 43.478 16.26 0.00 0.00 2.17
815 826 1.273455 GCGTGTGTGTAGTGGTCGTC 61.273 60.000 0.00 0.00 0.00 4.20
916 927 0.033366 GAAGCGGCAATGGTGGTTTT 59.967 50.000 1.45 0.00 0.00 2.43
973 984 2.743928 CTGGCGACTGTGGGCTTC 60.744 66.667 16.61 0.00 0.00 3.86
1149 1161 0.038251 CTAGTTCGCTGGTGCAGACA 60.038 55.000 0.00 0.00 39.64 3.41
1236 1248 2.130272 TGGTTTAGTGCACACCAACA 57.870 45.000 21.64 9.98 37.66 3.33
1251 1263 2.105821 TGGAGGTTCATCTTCGTTGGTT 59.894 45.455 0.00 0.00 0.00 3.67
1360 1373 2.966915 ACCATATGCAGGGCAAATGAT 58.033 42.857 0.00 0.00 43.62 2.45
1954 1970 9.507280 AGCATTACTTTGATGTTTGAATTATCG 57.493 29.630 0.00 0.00 0.00 2.92
2068 2084 4.555511 GCTTCTCTTTGTCGCTTTCAATGT 60.556 41.667 0.00 0.00 0.00 2.71
2249 2266 4.966805 CCCCCATAGTTTGTAGTCTTCCTA 59.033 45.833 0.00 0.00 0.00 2.94
2287 2304 1.798079 GCGTACTCGATGAGGTTGTCC 60.798 57.143 0.00 0.00 39.71 4.02
2408 2425 4.137615 GGGGCAATAGGGGCGGTT 62.138 66.667 0.00 0.00 0.00 4.44
2438 2455 0.678395 AGGCAGGCTCTGATGTATCG 59.322 55.000 6.40 0.00 32.44 2.92
2556 2573 0.678395 AGGCAGGCTCTGATGTATCG 59.322 55.000 6.40 0.00 32.44 2.92
2617 2634 6.863126 CCAACAAGAGCAAACTACTAATTTGG 59.137 38.462 0.00 0.00 37.49 3.28
2722 2739 8.780249 GCTACCAAACCAAACGTATATAATGAT 58.220 33.333 0.00 0.00 0.00 2.45
2733 2750 1.600485 ACGAAGCTACCAAACCAAACG 59.400 47.619 0.00 0.00 0.00 3.60
3124 3143 2.257207 TGACTCCTCCAGTAACTTGGG 58.743 52.381 0.00 0.00 38.81 4.12
3208 3230 6.531594 CGAGTTCAAGTATCTAGCATTGTCAA 59.468 38.462 0.00 0.00 0.00 3.18
3316 3338 1.681793 ACCTGAGCGCTTATACACGAT 59.318 47.619 13.26 0.00 0.00 3.73
3374 3400 3.370527 GGCTCCAGACCTGTTTATAAGCA 60.371 47.826 1.83 1.83 0.00 3.91
3390 3416 2.279073 CTAGTCGAGGGGGCTCCA 59.721 66.667 5.99 0.00 38.24 3.86
3440 3466 3.349006 CACCTGTGCAGTGCGTCC 61.349 66.667 11.20 1.27 0.00 4.79
3461 3487 2.196925 CGGCCCAGATAGCTCGTCT 61.197 63.158 0.00 0.00 0.00 4.18
4574 6097 8.618702 TTTTCCGTGTGGATGTTTAAGTATTA 57.381 30.769 0.00 0.00 45.91 0.98
4622 6145 5.363101 TGATGGCATTTTTGCACTGTTTAA 58.637 33.333 0.00 0.00 36.33 1.52
4633 6156 2.094078 CGGTGGTGATGATGGCATTTTT 60.094 45.455 0.00 0.00 34.11 1.94
4657 6180 2.564062 CCAAATCCCACTTGCACATCTT 59.436 45.455 0.00 0.00 0.00 2.40
4661 6184 0.758310 TGCCAAATCCCACTTGCACA 60.758 50.000 0.00 0.00 0.00 4.57
4711 6234 8.936070 AGTTAAATGGTTTTTACTGTTGAACC 57.064 30.769 10.76 10.76 41.44 3.62
4791 6314 3.649986 GCCGTTTGCAGTGCGTCT 61.650 61.111 11.20 0.00 40.77 4.18
5101 6644 1.695242 TCAACCCCTTTGAGCGTTCTA 59.305 47.619 0.00 0.00 39.45 2.10
5159 6702 3.056328 GGCCTTGTCTGGTTCGCC 61.056 66.667 0.00 0.00 37.92 5.54
5191 6734 0.758123 CTCCCTTCATCCTGAGCCTC 59.242 60.000 0.00 0.00 0.00 4.70
5412 6956 9.280174 CTAGTAGGGAAACAAGTGTGATTAAAA 57.720 33.333 0.00 0.00 0.00 1.52
5433 6978 9.027202 TCACAAACCACACTATTACATCTAGTA 57.973 33.333 0.00 0.00 0.00 1.82
5444 6989 5.197451 TCCACTTTTCACAAACCACACTAT 58.803 37.500 0.00 0.00 0.00 2.12
5499 7046 9.585099 TGCATCAGGTTCAAAAATACATTTATC 57.415 29.630 0.00 0.00 0.00 1.75
5784 7336 8.721478 ACATAGTTTCAGTCAATGTTGTATGTC 58.279 33.333 0.00 0.00 0.00 3.06
6645 8207 5.925969 CCAACAAATGTGTACAATTTCTCCC 59.074 40.000 0.00 0.00 36.80 4.30
7090 8666 8.732746 ACAAATCTGAAACAACAGTAGTAAGT 57.267 30.769 0.00 0.00 38.79 2.24
7095 8671 9.438291 CAAACTACAAATCTGAAACAACAGTAG 57.562 33.333 0.00 0.00 38.79 2.57
7098 8674 6.974622 AGCAAACTACAAATCTGAAACAACAG 59.025 34.615 0.00 0.00 39.02 3.16
7127 8703 6.263168 GCATAAGGTAGCTGGTTCAACATAAT 59.737 38.462 0.00 0.00 0.00 1.28
7339 8945 3.010138 TGGCCTTTATTTAGTCTGCCACT 59.990 43.478 3.32 0.00 42.10 4.00
7363 8969 3.794475 GCGTCGAAGGCTACTATTTGCTA 60.794 47.826 0.00 0.00 0.00 3.49
7608 9217 2.281517 CCGTGTGTTCAACTGTACCAA 58.718 47.619 0.00 0.00 0.00 3.67
7850 9472 7.330700 TGTGTTTCTTGCGATTTTTCTCTTTTT 59.669 29.630 0.00 0.00 0.00 1.94
7865 9487 3.181510 ACGTCTTCTGTTGTGTTTCTTGC 60.182 43.478 0.00 0.00 0.00 4.01
7997 10699 9.468532 GTTCAAAACTATTTCTTTCTCAATGCT 57.531 29.630 0.00 0.00 0.00 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.