Multiple sequence alignment - TraesCS5B01G197100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G197100 chr5B 100.000 4449 0 0 1 4449 354781971 354786419 0.000000e+00 8216.0
1 TraesCS5B01G197100 chr5A 94.343 2298 90 15 320 2597 402904658 402906935 0.000000e+00 3487.0
2 TraesCS5B01G197100 chr5A 93.766 1171 48 10 2616 3773 402907078 402908236 0.000000e+00 1735.0
3 TraesCS5B01G197100 chr5D 93.866 2315 95 18 321 2597 309675066 309677371 0.000000e+00 3445.0
4 TraesCS5B01G197100 chr5D 96.127 1007 32 4 2616 3620 309677469 309678470 0.000000e+00 1637.0
5 TraesCS5B01G197100 chr5D 95.041 121 6 0 3652 3772 309678475 309678595 1.630000e-44 191.0
6 TraesCS5B01G197100 chrUn 85.323 1240 128 27 595 1790 31777638 31778867 0.000000e+00 1232.0
7 TraesCS5B01G197100 chrUn 90.339 590 55 1 1203 1790 31805400 31805989 0.000000e+00 773.0
8 TraesCS5B01G197100 chrUn 91.262 309 25 1 1203 1509 276916181 276916489 1.910000e-113 420.0
9 TraesCS5B01G197100 chrUn 91.262 309 25 1 1203 1509 276923611 276923919 1.910000e-113 420.0
10 TraesCS5B01G197100 chrUn 85.106 235 19 6 762 983 31805105 31805336 4.480000e-55 226.0
11 TraesCS5B01G197100 chrUn 85.106 235 19 6 762 983 276915886 276916117 4.480000e-55 226.0
12 TraesCS5B01G197100 chrUn 85.106 235 19 6 762 983 276923316 276923547 4.480000e-55 226.0
13 TraesCS5B01G197100 chrUn 95.161 62 2 1 3777 3838 383849797 383849737 3.660000e-16 97.1
14 TraesCS5B01G197100 chrUn 95.082 61 2 1 3778 3838 155109281 155109222 1.320000e-15 95.3
15 TraesCS5B01G197100 chrUn 95.082 61 2 1 3778 3838 155195587 155195528 1.320000e-15 95.3
16 TraesCS5B01G197100 chrUn 95.082 61 2 1 3778 3838 164275633 164275692 1.320000e-15 95.3
17 TraesCS5B01G197100 chrUn 95.082 61 2 1 3778 3838 265810520 265810461 1.320000e-15 95.3
18 TraesCS5B01G197100 chrUn 95.082 61 2 1 3778 3838 333515501 333515442 1.320000e-15 95.3
19 TraesCS5B01G197100 chrUn 95.082 61 2 1 3778 3838 374263364 374263305 1.320000e-15 95.3
20 TraesCS5B01G197100 chrUn 95.082 61 2 1 3778 3838 396246439 396246380 1.320000e-15 95.3
21 TraesCS5B01G197100 chrUn 78.912 147 14 8 595 725 31804954 31805099 2.850000e-12 84.2
22 TraesCS5B01G197100 chrUn 78.912 147 14 8 595 725 276915735 276915880 2.850000e-12 84.2
23 TraesCS5B01G197100 chrUn 78.912 147 14 8 595 725 276923165 276923310 2.850000e-12 84.2
24 TraesCS5B01G197100 chr2B 88.293 1025 91 16 776 1788 775126571 775127578 0.000000e+00 1201.0
25 TraesCS5B01G197100 chr2B 89.689 611 57 4 3839 4448 71225101 71224496 0.000000e+00 774.0
26 TraesCS5B01G197100 chr2B 89.362 611 60 3 3839 4449 187003962 187003357 0.000000e+00 763.0
27 TraesCS5B01G197100 chr2B 89.141 617 51 11 3839 4449 159351572 159352178 0.000000e+00 754.0
28 TraesCS5B01G197100 chr2B 86.441 59 6 2 676 733 775126502 775126559 3.720000e-06 63.9
29 TraesCS5B01G197100 chr3B 90.584 616 49 6 3836 4449 630120663 630121271 0.000000e+00 808.0
30 TraesCS5B01G197100 chr3B 89.482 618 50 10 3839 4449 240406211 240405602 0.000000e+00 767.0
31 TraesCS5B01G197100 chr3B 89.233 613 60 5 3838 4449 273576813 273576206 0.000000e+00 761.0
32 TraesCS5B01G197100 chr7B 90.081 615 51 8 3838 4449 423750750 423751357 0.000000e+00 789.0
33 TraesCS5B01G197100 chr7B 89.389 622 59 5 3830 4449 135390258 135389642 0.000000e+00 776.0
34 TraesCS5B01G197100 chr4B 89.251 614 54 9 3839 4449 559975363 559975967 0.000000e+00 758.0
35 TraesCS5B01G197100 chr4B 96.970 33 1 0 3241 3273 500253402 500253370 6.220000e-04 56.5
36 TraesCS5B01G197100 chr2A 85.140 572 55 16 762 1327 759853885 759853338 3.890000e-155 558.0
37 TraesCS5B01G197100 chr2A 87.243 243 31 0 1548 1790 759853163 759852921 1.220000e-70 278.0
38 TraesCS5B01G197100 chr2A 78.231 147 12 9 599 725 759854037 759853891 4.770000e-10 76.8
39 TraesCS5B01G197100 chr2D 87.013 462 38 6 1349 1790 631896245 631896704 6.640000e-138 501.0
40 TraesCS5B01G197100 chr1B 95.082 61 2 1 3778 3838 36147964 36147905 1.320000e-15 95.3
41 TraesCS5B01G197100 chr4D 78.358 134 20 6 3149 3273 403396604 403396471 1.330000e-10 78.7
42 TraesCS5B01G197100 chr4D 86.441 59 8 0 3223 3281 301299479 301299421 1.030000e-06 65.8
43 TraesCS5B01G197100 chr4A 78.358 134 20 7 3149 3273 60926364 60926231 1.330000e-10 78.7
44 TraesCS5B01G197100 chr4A 88.000 50 6 0 3223 3272 180397965 180398014 4.810000e-05 60.2
45 TraesCS5B01G197100 chr6D 90.000 50 4 1 1513 1562 14076816 14076864 3.720000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G197100 chr5B 354781971 354786419 4448 False 8216.000000 8216 100.000000 1 4449 1 chr5B.!!$F1 4448
1 TraesCS5B01G197100 chr5A 402904658 402908236 3578 False 2611.000000 3487 94.054500 320 3773 2 chr5A.!!$F1 3453
2 TraesCS5B01G197100 chr5D 309675066 309678595 3529 False 1757.666667 3445 95.011333 321 3772 3 chr5D.!!$F1 3451
3 TraesCS5B01G197100 chrUn 31777638 31778867 1229 False 1232.000000 1232 85.323000 595 1790 1 chrUn.!!$F1 1195
4 TraesCS5B01G197100 chrUn 31804954 31805989 1035 False 361.066667 773 84.785667 595 1790 3 chrUn.!!$F3 1195
5 TraesCS5B01G197100 chrUn 276915735 276916489 754 False 243.400000 420 85.093333 595 1509 3 chrUn.!!$F4 914
6 TraesCS5B01G197100 chrUn 276923165 276923919 754 False 243.400000 420 85.093333 595 1509 3 chrUn.!!$F5 914
7 TraesCS5B01G197100 chr2B 71224496 71225101 605 True 774.000000 774 89.689000 3839 4448 1 chr2B.!!$R1 609
8 TraesCS5B01G197100 chr2B 187003357 187003962 605 True 763.000000 763 89.362000 3839 4449 1 chr2B.!!$R2 610
9 TraesCS5B01G197100 chr2B 159351572 159352178 606 False 754.000000 754 89.141000 3839 4449 1 chr2B.!!$F1 610
10 TraesCS5B01G197100 chr2B 775126502 775127578 1076 False 632.450000 1201 87.367000 676 1788 2 chr2B.!!$F2 1112
11 TraesCS5B01G197100 chr3B 630120663 630121271 608 False 808.000000 808 90.584000 3836 4449 1 chr3B.!!$F1 613
12 TraesCS5B01G197100 chr3B 240405602 240406211 609 True 767.000000 767 89.482000 3839 4449 1 chr3B.!!$R1 610
13 TraesCS5B01G197100 chr3B 273576206 273576813 607 True 761.000000 761 89.233000 3838 4449 1 chr3B.!!$R2 611
14 TraesCS5B01G197100 chr7B 423750750 423751357 607 False 789.000000 789 90.081000 3838 4449 1 chr7B.!!$F1 611
15 TraesCS5B01G197100 chr7B 135389642 135390258 616 True 776.000000 776 89.389000 3830 4449 1 chr7B.!!$R1 619
16 TraesCS5B01G197100 chr4B 559975363 559975967 604 False 758.000000 758 89.251000 3839 4449 1 chr4B.!!$F1 610
17 TraesCS5B01G197100 chr2A 759852921 759854037 1116 True 304.266667 558 83.538000 599 1790 3 chr2A.!!$R1 1191

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 46 0.024619 GAAAACTCACGGTATCGCGC 59.975 55.0 0.00 0.0 40.63 6.86 F
58 59 0.032678 ATCGCGCCTGGACATAGAAG 59.967 55.0 0.00 0.0 0.00 2.85 F
957 1044 0.108709 CAGAGCTCTCAGTCCAGCAC 60.109 60.0 14.96 0.0 38.18 4.40 F
959 1046 0.389687 GAGCTCTCAGTCCAGCACAC 60.390 60.0 6.43 0.0 38.18 3.82 F
1050 1139 1.180029 TCGTAGTGGCCTTACTGGTC 58.820 55.0 3.32 0.0 41.87 4.02 F
2391 2559 1.038130 ACGGTATGCTCCTTCGCTCT 61.038 55.0 0.00 0.0 0.00 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1050 1139 1.287730 GAACCTCACACGAGCAGCAG 61.288 60.000 0.00 0.00 38.00 4.24 R
1086 1175 1.326213 CGAGGGAGTCCAGCACATCT 61.326 60.000 12.30 0.00 34.83 2.90 R
1791 1955 1.889829 CCGAGGTACATGAGGATCCTC 59.110 57.143 31.59 31.59 43.01 3.71 R
2381 2545 2.156917 TGTAACGAGAAGAGCGAAGGA 58.843 47.619 0.00 0.00 0.00 3.36 R
2748 3046 2.789893 GCGAAGTAGTAATGCTCGAAGG 59.210 50.000 4.86 0.00 0.00 3.46 R
4217 4535 0.035458 GGAGAGGGGACACAGTGTTG 59.965 60.000 7.86 0.00 0.00 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.719426 AGGTTTGACTTCGGTCTACG 57.281 50.000 0.00 0.00 44.70 3.51
20 21 1.271656 AGGTTTGACTTCGGTCTACGG 59.728 52.381 0.00 0.00 44.70 4.02
21 22 1.670967 GGTTTGACTTCGGTCTACGGG 60.671 57.143 0.00 0.00 44.70 5.28
22 23 1.000171 GTTTGACTTCGGTCTACGGGT 60.000 52.381 0.00 0.00 44.70 5.28
23 24 0.599558 TTGACTTCGGTCTACGGGTG 59.400 55.000 0.00 0.00 44.70 4.61
24 25 1.246056 TGACTTCGGTCTACGGGTGG 61.246 60.000 0.00 0.00 44.70 4.61
25 26 1.228675 ACTTCGGTCTACGGGTGGT 60.229 57.895 0.00 0.00 44.45 4.16
26 27 1.214589 CTTCGGTCTACGGGTGGTG 59.785 63.158 0.00 0.00 44.45 4.17
27 28 1.228521 TTCGGTCTACGGGTGGTGA 60.229 57.895 0.00 0.00 44.45 4.02
28 29 0.827089 TTCGGTCTACGGGTGGTGAA 60.827 55.000 0.00 0.00 44.45 3.18
29 30 0.827089 TCGGTCTACGGGTGGTGAAA 60.827 55.000 0.00 0.00 44.45 2.69
30 31 0.033781 CGGTCTACGGGTGGTGAAAA 59.966 55.000 0.00 0.00 39.42 2.29
31 32 1.516161 GGTCTACGGGTGGTGAAAAC 58.484 55.000 0.00 0.00 0.00 2.43
32 33 1.071228 GGTCTACGGGTGGTGAAAACT 59.929 52.381 0.00 0.00 0.00 2.66
33 34 2.410939 GTCTACGGGTGGTGAAAACTC 58.589 52.381 0.00 0.00 0.00 3.01
34 35 2.040939 TCTACGGGTGGTGAAAACTCA 58.959 47.619 0.00 0.00 0.00 3.41
35 36 2.140717 CTACGGGTGGTGAAAACTCAC 58.859 52.381 0.00 0.00 39.73 3.51
36 37 0.812412 ACGGGTGGTGAAAACTCACG 60.812 55.000 0.00 0.00 41.26 4.35
37 38 1.503818 CGGGTGGTGAAAACTCACGG 61.504 60.000 0.00 0.00 41.26 4.94
38 39 0.464916 GGGTGGTGAAAACTCACGGT 60.465 55.000 0.00 0.00 41.26 4.83
39 40 1.202675 GGGTGGTGAAAACTCACGGTA 60.203 52.381 0.00 0.00 41.26 4.02
40 41 2.551504 GGGTGGTGAAAACTCACGGTAT 60.552 50.000 0.00 0.00 41.26 2.73
41 42 2.740447 GGTGGTGAAAACTCACGGTATC 59.260 50.000 0.00 0.00 41.26 2.24
42 43 2.410730 GTGGTGAAAACTCACGGTATCG 59.589 50.000 0.00 0.00 41.26 2.92
43 44 1.392510 GGTGAAAACTCACGGTATCGC 59.607 52.381 0.00 0.00 41.26 4.58
44 45 1.058695 GTGAAAACTCACGGTATCGCG 59.941 52.381 0.00 0.00 40.63 5.87
45 46 0.024619 GAAAACTCACGGTATCGCGC 59.975 55.000 0.00 0.00 40.63 6.86
46 47 1.356527 AAAACTCACGGTATCGCGCC 61.357 55.000 0.00 0.00 40.63 6.53
47 48 2.221906 AAACTCACGGTATCGCGCCT 62.222 55.000 0.00 0.00 40.63 5.52
48 49 2.655364 CTCACGGTATCGCGCCTG 60.655 66.667 0.00 0.00 40.63 4.85
49 50 4.201679 TCACGGTATCGCGCCTGG 62.202 66.667 0.00 0.00 40.63 4.45
50 51 4.201679 CACGGTATCGCGCCTGGA 62.202 66.667 0.00 0.00 40.63 3.86
51 52 4.203076 ACGGTATCGCGCCTGGAC 62.203 66.667 0.00 0.00 40.63 4.02
52 53 4.201679 CGGTATCGCGCCTGGACA 62.202 66.667 0.00 0.00 0.00 4.02
53 54 2.421739 GGTATCGCGCCTGGACAT 59.578 61.111 0.00 0.00 0.00 3.06
54 55 1.663739 GGTATCGCGCCTGGACATA 59.336 57.895 0.00 0.00 0.00 2.29
55 56 0.388649 GGTATCGCGCCTGGACATAG 60.389 60.000 0.00 0.00 0.00 2.23
56 57 0.596577 GTATCGCGCCTGGACATAGA 59.403 55.000 0.00 0.00 0.00 1.98
57 58 1.000607 GTATCGCGCCTGGACATAGAA 60.001 52.381 0.00 0.00 0.00 2.10
58 59 0.032678 ATCGCGCCTGGACATAGAAG 59.967 55.000 0.00 0.00 0.00 2.85
59 60 1.592669 CGCGCCTGGACATAGAAGG 60.593 63.158 0.00 0.00 0.00 3.46
60 61 1.823295 GCGCCTGGACATAGAAGGA 59.177 57.895 0.00 0.00 32.43 3.36
61 62 0.178068 GCGCCTGGACATAGAAGGAA 59.822 55.000 0.00 0.00 32.43 3.36
62 63 1.808133 GCGCCTGGACATAGAAGGAAG 60.808 57.143 0.00 0.00 32.43 3.46
63 64 1.202580 CGCCTGGACATAGAAGGAAGG 60.203 57.143 0.00 0.00 32.43 3.46
64 65 1.475930 GCCTGGACATAGAAGGAAGGC 60.476 57.143 0.00 0.00 41.70 4.35
65 66 2.122768 CCTGGACATAGAAGGAAGGCT 58.877 52.381 0.00 0.00 32.43 4.58
66 67 2.158842 CCTGGACATAGAAGGAAGGCTG 60.159 54.545 0.00 0.00 32.43 4.85
67 68 2.503356 CTGGACATAGAAGGAAGGCTGT 59.497 50.000 0.00 0.00 0.00 4.40
68 69 2.501723 TGGACATAGAAGGAAGGCTGTC 59.498 50.000 0.00 0.00 33.86 3.51
69 70 2.482142 GGACATAGAAGGAAGGCTGTCG 60.482 54.545 0.00 0.00 35.10 4.35
70 71 1.134670 ACATAGAAGGAAGGCTGTCGC 60.135 52.381 0.00 0.00 0.00 5.19
80 81 4.606071 GCTGTCGCCTCACTCATT 57.394 55.556 0.00 0.00 0.00 2.57
81 82 3.741029 GCTGTCGCCTCACTCATTA 57.259 52.632 0.00 0.00 0.00 1.90
82 83 2.231215 GCTGTCGCCTCACTCATTAT 57.769 50.000 0.00 0.00 0.00 1.28
83 84 1.863454 GCTGTCGCCTCACTCATTATG 59.137 52.381 0.00 0.00 0.00 1.90
84 85 1.863454 CTGTCGCCTCACTCATTATGC 59.137 52.381 0.00 0.00 0.00 3.14
85 86 1.482182 TGTCGCCTCACTCATTATGCT 59.518 47.619 0.00 0.00 0.00 3.79
86 87 2.693074 TGTCGCCTCACTCATTATGCTA 59.307 45.455 0.00 0.00 0.00 3.49
87 88 3.243535 TGTCGCCTCACTCATTATGCTAG 60.244 47.826 0.00 0.00 0.00 3.42
88 89 2.959030 TCGCCTCACTCATTATGCTAGT 59.041 45.455 0.00 0.00 0.00 2.57
89 90 4.023107 GTCGCCTCACTCATTATGCTAGTA 60.023 45.833 0.00 0.00 0.00 1.82
90 91 4.583073 TCGCCTCACTCATTATGCTAGTAA 59.417 41.667 0.00 0.00 0.00 2.24
91 92 4.681942 CGCCTCACTCATTATGCTAGTAAC 59.318 45.833 0.00 0.00 0.00 2.50
92 93 4.991687 GCCTCACTCATTATGCTAGTAACC 59.008 45.833 0.00 0.00 0.00 2.85
93 94 5.221541 GCCTCACTCATTATGCTAGTAACCT 60.222 44.000 0.00 0.00 0.00 3.50
94 95 6.219473 CCTCACTCATTATGCTAGTAACCTG 58.781 44.000 0.00 0.00 0.00 4.00
95 96 6.161855 TCACTCATTATGCTAGTAACCTGG 57.838 41.667 0.00 0.00 0.00 4.45
96 97 5.070446 TCACTCATTATGCTAGTAACCTGGG 59.930 44.000 0.00 0.00 0.00 4.45
97 98 5.070446 CACTCATTATGCTAGTAACCTGGGA 59.930 44.000 0.00 0.00 0.00 4.37
98 99 5.305644 ACTCATTATGCTAGTAACCTGGGAG 59.694 44.000 0.00 0.00 0.00 4.30
99 100 4.040461 TCATTATGCTAGTAACCTGGGAGC 59.960 45.833 0.00 0.00 0.00 4.70
100 101 2.182516 ATGCTAGTAACCTGGGAGCT 57.817 50.000 0.00 0.00 34.19 4.09
101 102 1.952621 TGCTAGTAACCTGGGAGCTT 58.047 50.000 0.00 0.00 34.19 3.74
102 103 2.266279 TGCTAGTAACCTGGGAGCTTT 58.734 47.619 0.00 0.00 34.19 3.51
103 104 3.446968 TGCTAGTAACCTGGGAGCTTTA 58.553 45.455 0.00 0.00 34.19 1.85
104 105 3.451178 TGCTAGTAACCTGGGAGCTTTAG 59.549 47.826 0.00 0.00 34.19 1.85
105 106 3.705072 GCTAGTAACCTGGGAGCTTTAGA 59.295 47.826 0.00 0.00 0.00 2.10
106 107 4.161754 GCTAGTAACCTGGGAGCTTTAGAA 59.838 45.833 0.00 0.00 0.00 2.10
107 108 4.554960 AGTAACCTGGGAGCTTTAGAAC 57.445 45.455 0.00 0.00 0.00 3.01
108 109 3.908103 AGTAACCTGGGAGCTTTAGAACA 59.092 43.478 0.00 0.00 0.00 3.18
109 110 3.876309 AACCTGGGAGCTTTAGAACAA 57.124 42.857 0.00 0.00 0.00 2.83
110 111 3.425162 ACCTGGGAGCTTTAGAACAAG 57.575 47.619 0.00 0.00 0.00 3.16
111 112 2.979678 ACCTGGGAGCTTTAGAACAAGA 59.020 45.455 0.00 0.00 0.00 3.02
112 113 3.008485 ACCTGGGAGCTTTAGAACAAGAG 59.992 47.826 0.00 0.00 0.00 2.85
113 114 3.261897 CCTGGGAGCTTTAGAACAAGAGA 59.738 47.826 0.00 0.00 0.00 3.10
114 115 4.263068 CCTGGGAGCTTTAGAACAAGAGAA 60.263 45.833 0.00 0.00 0.00 2.87
115 116 5.304686 TGGGAGCTTTAGAACAAGAGAAA 57.695 39.130 0.00 0.00 0.00 2.52
116 117 5.880901 TGGGAGCTTTAGAACAAGAGAAAT 58.119 37.500 0.00 0.00 0.00 2.17
117 118 5.707298 TGGGAGCTTTAGAACAAGAGAAATG 59.293 40.000 0.00 0.00 0.00 2.32
118 119 5.392487 GGGAGCTTTAGAACAAGAGAAATGC 60.392 44.000 0.00 0.00 0.00 3.56
119 120 5.288543 AGCTTTAGAACAAGAGAAATGCG 57.711 39.130 0.00 0.00 0.00 4.73
120 121 3.848582 GCTTTAGAACAAGAGAAATGCGC 59.151 43.478 0.00 0.00 0.00 6.09
121 122 3.722555 TTAGAACAAGAGAAATGCGCG 57.277 42.857 0.00 0.00 0.00 6.86
122 123 1.795768 AGAACAAGAGAAATGCGCGA 58.204 45.000 12.10 0.00 0.00 5.87
123 124 1.728971 AGAACAAGAGAAATGCGCGAG 59.271 47.619 12.10 0.00 0.00 5.03
124 125 1.461127 GAACAAGAGAAATGCGCGAGT 59.539 47.619 12.10 0.00 0.00 4.18
125 126 1.512926 ACAAGAGAAATGCGCGAGTT 58.487 45.000 12.10 0.00 0.00 3.01
126 127 1.873591 ACAAGAGAAATGCGCGAGTTT 59.126 42.857 12.10 9.88 0.00 2.66
127 128 2.290641 ACAAGAGAAATGCGCGAGTTTT 59.709 40.909 12.10 5.57 0.00 2.43
128 129 2.882742 AGAGAAATGCGCGAGTTTTC 57.117 45.000 12.10 14.98 36.36 2.29
129 130 2.417719 AGAGAAATGCGCGAGTTTTCT 58.582 42.857 22.79 22.79 43.43 2.52
130 131 2.158449 AGAGAAATGCGCGAGTTTTCTG 59.842 45.455 25.73 0.00 41.99 3.02
131 132 1.873591 AGAAATGCGCGAGTTTTCTGT 59.126 42.857 22.28 7.35 41.11 3.41
132 133 3.064207 AGAAATGCGCGAGTTTTCTGTA 58.936 40.909 22.28 0.00 41.11 2.74
133 134 3.496884 AGAAATGCGCGAGTTTTCTGTAA 59.503 39.130 22.28 0.00 41.11 2.41
134 135 2.875080 ATGCGCGAGTTTTCTGTAAC 57.125 45.000 12.10 0.00 0.00 2.50
135 136 1.573026 TGCGCGAGTTTTCTGTAACA 58.427 45.000 12.10 0.00 0.00 2.41
136 137 1.934525 TGCGCGAGTTTTCTGTAACAA 59.065 42.857 12.10 0.00 0.00 2.83
137 138 2.352034 TGCGCGAGTTTTCTGTAACAAA 59.648 40.909 12.10 0.00 0.00 2.83
138 139 2.964768 GCGCGAGTTTTCTGTAACAAAG 59.035 45.455 12.10 0.00 0.00 2.77
139 140 2.964768 CGCGAGTTTTCTGTAACAAAGC 59.035 45.455 0.00 0.00 0.00 3.51
140 141 2.964768 GCGAGTTTTCTGTAACAAAGCG 59.035 45.455 0.00 0.00 0.00 4.68
141 142 3.302870 GCGAGTTTTCTGTAACAAAGCGA 60.303 43.478 0.00 0.00 0.00 4.93
142 143 4.446234 CGAGTTTTCTGTAACAAAGCGAG 58.554 43.478 0.00 0.00 0.00 5.03
143 144 4.608445 CGAGTTTTCTGTAACAAAGCGAGG 60.608 45.833 0.00 0.00 0.00 4.63
144 145 4.448210 AGTTTTCTGTAACAAAGCGAGGA 58.552 39.130 0.00 0.00 0.00 3.71
145 146 4.879545 AGTTTTCTGTAACAAAGCGAGGAA 59.120 37.500 0.00 0.00 0.00 3.36
146 147 5.531287 AGTTTTCTGTAACAAAGCGAGGAAT 59.469 36.000 0.00 0.00 0.00 3.01
147 148 6.039382 AGTTTTCTGTAACAAAGCGAGGAATT 59.961 34.615 0.00 0.00 0.00 2.17
148 149 5.356882 TTCTGTAACAAAGCGAGGAATTG 57.643 39.130 0.00 0.00 0.00 2.32
149 150 3.751175 TCTGTAACAAAGCGAGGAATTGG 59.249 43.478 0.00 0.00 0.00 3.16
150 151 2.817258 TGTAACAAAGCGAGGAATTGGG 59.183 45.455 0.00 0.00 0.00 4.12
151 152 1.995376 AACAAAGCGAGGAATTGGGT 58.005 45.000 0.00 0.00 0.00 4.51
152 153 1.534729 ACAAAGCGAGGAATTGGGTC 58.465 50.000 0.00 0.00 0.00 4.46
153 154 0.811281 CAAAGCGAGGAATTGGGTCC 59.189 55.000 0.00 0.00 38.03 4.46
158 159 2.998949 AGGAATTGGGTCCTCGCC 59.001 61.111 0.00 0.00 45.40 5.54
159 160 2.680370 AGGAATTGGGTCCTCGCCC 61.680 63.158 0.00 0.00 45.40 6.13
170 171 4.489771 CTCGCCCGGGGAAAGCAT 62.490 66.667 25.28 0.00 0.00 3.79
171 172 3.995506 CTCGCCCGGGGAAAGCATT 62.996 63.158 25.28 0.00 0.00 3.56
172 173 3.068064 CGCCCGGGGAAAGCATTT 61.068 61.111 25.28 0.00 43.98 2.32
173 174 2.578664 GCCCGGGGAAAGCATTTG 59.421 61.111 25.28 0.00 39.27 2.32
174 175 1.981853 GCCCGGGGAAAGCATTTGA 60.982 57.895 25.28 0.00 39.27 2.69
175 176 1.948721 GCCCGGGGAAAGCATTTGAG 61.949 60.000 25.28 0.00 39.27 3.02
176 177 1.512694 CCGGGGAAAGCATTTGAGC 59.487 57.895 0.00 0.00 39.27 4.26
178 179 0.453390 CGGGGAAAGCATTTGAGCTC 59.547 55.000 6.82 6.82 45.89 4.09
179 180 1.844687 GGGGAAAGCATTTGAGCTCT 58.155 50.000 16.19 0.00 45.89 4.09
180 181 2.174360 GGGGAAAGCATTTGAGCTCTT 58.826 47.619 16.19 0.00 45.89 2.85
181 182 2.564504 GGGGAAAGCATTTGAGCTCTTT 59.435 45.455 16.19 5.66 45.89 2.52
182 183 3.582780 GGGAAAGCATTTGAGCTCTTTG 58.417 45.455 16.19 10.61 45.89 2.77
183 184 3.256631 GGGAAAGCATTTGAGCTCTTTGA 59.743 43.478 16.19 0.00 45.89 2.69
184 185 4.081807 GGGAAAGCATTTGAGCTCTTTGAT 60.082 41.667 16.19 5.70 45.89 2.57
185 186 5.126061 GGGAAAGCATTTGAGCTCTTTGATA 59.874 40.000 16.19 0.00 45.89 2.15
186 187 6.032717 GGAAAGCATTTGAGCTCTTTGATAC 58.967 40.000 16.19 6.61 45.89 2.24
187 188 5.573337 AAGCATTTGAGCTCTTTGATACC 57.427 39.130 16.19 0.00 45.89 2.73
188 189 4.592942 AGCATTTGAGCTCTTTGATACCA 58.407 39.130 16.19 0.00 42.18 3.25
189 190 4.397417 AGCATTTGAGCTCTTTGATACCAC 59.603 41.667 16.19 0.00 42.18 4.16
190 191 4.156556 GCATTTGAGCTCTTTGATACCACA 59.843 41.667 16.19 0.00 0.00 4.17
191 192 5.335897 GCATTTGAGCTCTTTGATACCACAA 60.336 40.000 16.19 0.00 0.00 3.33
192 193 5.947228 TTTGAGCTCTTTGATACCACAAG 57.053 39.130 16.19 0.00 0.00 3.16
193 194 4.890158 TGAGCTCTTTGATACCACAAGA 57.110 40.909 16.19 0.00 0.00 3.02
194 195 4.825422 TGAGCTCTTTGATACCACAAGAG 58.175 43.478 16.19 4.14 33.10 2.85
195 196 4.284490 TGAGCTCTTTGATACCACAAGAGT 59.716 41.667 16.19 0.00 32.83 3.24
196 197 5.480422 TGAGCTCTTTGATACCACAAGAGTA 59.520 40.000 16.19 0.00 32.83 2.59
197 198 5.971763 AGCTCTTTGATACCACAAGAGTAG 58.028 41.667 9.33 0.00 32.83 2.57
198 199 5.482175 AGCTCTTTGATACCACAAGAGTAGT 59.518 40.000 9.33 0.00 32.83 2.73
199 200 6.663953 AGCTCTTTGATACCACAAGAGTAGTA 59.336 38.462 9.33 0.00 32.83 1.82
200 201 7.343316 AGCTCTTTGATACCACAAGAGTAGTAT 59.657 37.037 9.33 0.00 35.66 2.12
201 202 7.650104 GCTCTTTGATACCACAAGAGTAGTATC 59.350 40.741 9.33 7.09 44.50 2.24
202 203 8.824756 TCTTTGATACCACAAGAGTAGTATCT 57.175 34.615 12.82 0.00 44.52 1.98
203 204 9.916360 TCTTTGATACCACAAGAGTAGTATCTA 57.084 33.333 12.82 5.46 44.52 1.98
206 207 9.642343 TTGATACCACAAGAGTAGTATCTATGT 57.358 33.333 12.82 0.00 44.52 2.29
207 208 9.642343 TGATACCACAAGAGTAGTATCTATGTT 57.358 33.333 12.82 0.00 44.52 2.71
208 209 9.900710 GATACCACAAGAGTAGTATCTATGTTG 57.099 37.037 6.86 0.00 42.44 3.33
209 210 7.719871 ACCACAAGAGTAGTATCTATGTTGT 57.280 36.000 0.00 0.00 0.00 3.32
210 211 8.818622 ACCACAAGAGTAGTATCTATGTTGTA 57.181 34.615 0.00 0.00 0.00 2.41
211 212 9.422681 ACCACAAGAGTAGTATCTATGTTGTAT 57.577 33.333 0.00 0.00 0.00 2.29
221 222 8.894768 AGTATCTATGTTGTATTTTGAGAGGC 57.105 34.615 0.00 0.00 0.00 4.70
222 223 8.709308 AGTATCTATGTTGTATTTTGAGAGGCT 58.291 33.333 0.00 0.00 0.00 4.58
223 224 9.331282 GTATCTATGTTGTATTTTGAGAGGCTT 57.669 33.333 0.00 0.00 0.00 4.35
224 225 8.814038 ATCTATGTTGTATTTTGAGAGGCTTT 57.186 30.769 0.00 0.00 0.00 3.51
225 226 8.268850 TCTATGTTGTATTTTGAGAGGCTTTC 57.731 34.615 0.00 0.00 0.00 2.62
226 227 8.103305 TCTATGTTGTATTTTGAGAGGCTTTCT 58.897 33.333 6.60 0.00 39.43 2.52
227 228 6.959639 TGTTGTATTTTGAGAGGCTTTCTT 57.040 33.333 6.60 0.00 35.87 2.52
228 229 7.346751 TGTTGTATTTTGAGAGGCTTTCTTT 57.653 32.000 6.60 0.00 35.87 2.52
229 230 7.781056 TGTTGTATTTTGAGAGGCTTTCTTTT 58.219 30.769 6.60 0.00 35.87 2.27
230 231 7.920682 TGTTGTATTTTGAGAGGCTTTCTTTTC 59.079 33.333 6.60 0.00 35.87 2.29
231 232 7.823745 TGTATTTTGAGAGGCTTTCTTTTCT 57.176 32.000 6.60 0.00 35.87 2.52
232 233 7.651808 TGTATTTTGAGAGGCTTTCTTTTCTG 58.348 34.615 6.60 0.00 35.87 3.02
233 234 4.574599 TTTGAGAGGCTTTCTTTTCTGC 57.425 40.909 6.60 0.00 35.87 4.26
234 235 2.508526 TGAGAGGCTTTCTTTTCTGCC 58.491 47.619 6.60 0.00 45.21 4.85
239 240 1.815613 GGCTTTCTTTTCTGCCTCTCC 59.184 52.381 0.00 0.00 41.92 3.71
240 241 2.554124 GGCTTTCTTTTCTGCCTCTCCT 60.554 50.000 0.00 0.00 41.92 3.69
241 242 3.153130 GCTTTCTTTTCTGCCTCTCCTT 58.847 45.455 0.00 0.00 0.00 3.36
242 243 3.571828 GCTTTCTTTTCTGCCTCTCCTTT 59.428 43.478 0.00 0.00 0.00 3.11
243 244 4.762251 GCTTTCTTTTCTGCCTCTCCTTTA 59.238 41.667 0.00 0.00 0.00 1.85
244 245 5.241728 GCTTTCTTTTCTGCCTCTCCTTTAA 59.758 40.000 0.00 0.00 0.00 1.52
245 246 6.239036 GCTTTCTTTTCTGCCTCTCCTTTAAA 60.239 38.462 0.00 0.00 0.00 1.52
246 247 7.654022 TTTCTTTTCTGCCTCTCCTTTAAAA 57.346 32.000 0.00 0.00 0.00 1.52
247 248 6.635030 TCTTTTCTGCCTCTCCTTTAAAAC 57.365 37.500 0.00 0.00 0.00 2.43
248 249 5.535030 TCTTTTCTGCCTCTCCTTTAAAACC 59.465 40.000 0.00 0.00 0.00 3.27
249 250 4.724279 TTCTGCCTCTCCTTTAAAACCT 57.276 40.909 0.00 0.00 0.00 3.50
250 251 5.836024 TTCTGCCTCTCCTTTAAAACCTA 57.164 39.130 0.00 0.00 0.00 3.08
251 252 5.836024 TCTGCCTCTCCTTTAAAACCTAA 57.164 39.130 0.00 0.00 0.00 2.69
252 253 6.195600 TCTGCCTCTCCTTTAAAACCTAAA 57.804 37.500 0.00 0.00 0.00 1.85
253 254 6.002082 TCTGCCTCTCCTTTAAAACCTAAAC 58.998 40.000 0.00 0.00 0.00 2.01
254 255 5.948842 TGCCTCTCCTTTAAAACCTAAACT 58.051 37.500 0.00 0.00 0.00 2.66
255 256 7.016858 TCTGCCTCTCCTTTAAAACCTAAACTA 59.983 37.037 0.00 0.00 0.00 2.24
256 257 7.696017 TGCCTCTCCTTTAAAACCTAAACTAT 58.304 34.615 0.00 0.00 0.00 2.12
257 258 7.610305 TGCCTCTCCTTTAAAACCTAAACTATG 59.390 37.037 0.00 0.00 0.00 2.23
258 259 7.610692 GCCTCTCCTTTAAAACCTAAACTATGT 59.389 37.037 0.00 0.00 0.00 2.29
259 260 9.516546 CCTCTCCTTTAAAACCTAAACTATGTT 57.483 33.333 0.00 0.00 0.00 2.71
288 289 9.243637 CTCTTCTTCTTTATTAACGAGATGAGG 57.756 37.037 0.00 7.02 0.00 3.86
289 290 8.750298 TCTTCTTCTTTATTAACGAGATGAGGT 58.250 33.333 0.00 0.00 0.00 3.85
300 301 5.803020 ACGAGATGAGGTAAATCTTTTGC 57.197 39.130 0.00 0.00 34.50 3.68
301 302 4.636206 ACGAGATGAGGTAAATCTTTTGCC 59.364 41.667 0.00 0.00 34.50 4.52
302 303 4.878397 CGAGATGAGGTAAATCTTTTGCCT 59.122 41.667 9.04 9.04 34.50 4.75
303 304 5.007136 CGAGATGAGGTAAATCTTTTGCCTC 59.993 44.000 22.58 22.58 39.47 4.70
304 305 5.196695 AGATGAGGTAAATCTTTTGCCTCC 58.803 41.667 24.84 15.32 38.86 4.30
305 306 3.697166 TGAGGTAAATCTTTTGCCTCCC 58.303 45.455 24.84 10.23 38.86 4.30
306 307 3.333680 TGAGGTAAATCTTTTGCCTCCCT 59.666 43.478 24.84 5.95 38.86 4.20
307 308 4.202673 TGAGGTAAATCTTTTGCCTCCCTT 60.203 41.667 24.84 1.41 38.86 3.95
308 309 4.752063 AGGTAAATCTTTTGCCTCCCTTT 58.248 39.130 4.07 0.00 0.00 3.11
309 310 5.899278 AGGTAAATCTTTTGCCTCCCTTTA 58.101 37.500 4.07 0.00 0.00 1.85
310 311 6.319715 AGGTAAATCTTTTGCCTCCCTTTAA 58.680 36.000 4.07 0.00 0.00 1.52
311 312 6.437477 AGGTAAATCTTTTGCCTCCCTTTAAG 59.563 38.462 4.07 0.00 0.00 1.85
312 313 6.436218 GGTAAATCTTTTGCCTCCCTTTAAGA 59.564 38.462 0.00 0.00 0.00 2.10
313 314 6.994421 AAATCTTTTGCCTCCCTTTAAGAA 57.006 33.333 0.00 0.00 0.00 2.52
314 315 6.994421 AATCTTTTGCCTCCCTTTAAGAAA 57.006 33.333 0.00 0.00 0.00 2.52
315 316 6.994421 ATCTTTTGCCTCCCTTTAAGAAAA 57.006 33.333 0.00 0.00 0.00 2.29
316 317 6.994421 TCTTTTGCCTCCCTTTAAGAAAAT 57.006 33.333 0.00 0.00 0.00 1.82
317 318 8.664669 ATCTTTTGCCTCCCTTTAAGAAAATA 57.335 30.769 0.00 0.00 0.00 1.40
318 319 8.485578 TCTTTTGCCTCCCTTTAAGAAAATAA 57.514 30.769 0.00 0.00 0.00 1.40
347 348 3.754850 TGATGAACTTCCACAGATGCTTG 59.245 43.478 0.00 0.00 0.00 4.01
356 357 0.670162 ACAGATGCTTGCTTGCGTTT 59.330 45.000 0.00 0.00 35.36 3.60
420 433 7.987750 TTGTTAAGATGTACTGTAATTGGCA 57.012 32.000 0.00 0.00 0.00 4.92
421 434 7.609760 TGTTAAGATGTACTGTAATTGGCAG 57.390 36.000 9.42 9.42 39.67 4.85
507 523 3.134127 GCACCAACAGATCGGCCC 61.134 66.667 0.00 0.00 0.00 5.80
511 527 1.224315 CCAACAGATCGGCCCATCA 59.776 57.895 13.24 0.00 0.00 3.07
544 560 0.110373 GGTCATTTTCCACGACGCAC 60.110 55.000 0.00 0.00 0.00 5.34
567 585 3.953612 GCAATACCAAGTCATCATCCCAA 59.046 43.478 0.00 0.00 0.00 4.12
681 740 1.226688 CCATGATCGAGACGTGCGT 60.227 57.895 0.00 0.00 0.00 5.24
804 864 2.036256 GTTCCCTGGCCACAGCAT 59.964 61.111 0.00 0.00 43.53 3.79
805 865 2.036098 TTCCCTGGCCACAGCATG 59.964 61.111 0.00 0.00 43.53 4.06
815 875 3.751246 ACAGCATGCGCGCCAAAT 61.751 55.556 30.77 13.29 45.49 2.32
931 1013 2.093658 GGGCTCCTTAATTCACGTCAGA 60.094 50.000 0.00 0.00 0.00 3.27
957 1044 0.108709 CAGAGCTCTCAGTCCAGCAC 60.109 60.000 14.96 0.00 38.18 4.40
958 1045 0.541530 AGAGCTCTCAGTCCAGCACA 60.542 55.000 11.45 0.00 38.18 4.57
959 1046 0.389687 GAGCTCTCAGTCCAGCACAC 60.390 60.000 6.43 0.00 38.18 3.82
1050 1139 1.180029 TCGTAGTGGCCTTACTGGTC 58.820 55.000 3.32 0.00 41.87 4.02
1086 1175 2.764572 GGTTCGAGGTAAGGAGGATGAA 59.235 50.000 0.00 0.00 0.00 2.57
1328 1444 2.579787 CACCATCGACGCGGAGTC 60.580 66.667 12.47 1.42 46.16 3.36
1791 1955 1.197721 AGCAAATCAAAGAAGACGCGG 59.802 47.619 12.47 0.00 0.00 6.46
1827 1991 2.044551 GGGTACGTCCTCCTCGGT 60.045 66.667 0.00 0.00 36.25 4.69
2381 2545 1.137086 CAAGCTACTCCACGGTATGCT 59.863 52.381 0.00 0.00 32.17 3.79
2391 2559 1.038130 ACGGTATGCTCCTTCGCTCT 61.038 55.000 0.00 0.00 0.00 4.09
2405 2573 5.100259 CCTTCGCTCTTCTCGTTACAATAA 58.900 41.667 0.00 0.00 0.00 1.40
2408 2576 7.359765 CCTTCGCTCTTCTCGTTACAATAAAAA 60.360 37.037 0.00 0.00 0.00 1.94
2429 2599 8.446599 AAAAAGTCGGAGAAGAGAAATACAAA 57.553 30.769 0.00 0.00 39.69 2.83
2446 2619 6.668541 ATACAAACTGCTACACATCACATC 57.331 37.500 0.00 0.00 0.00 3.06
2478 2651 5.476945 ACAAGAAAGTTTCAACACTTGGAGT 59.523 36.000 17.65 0.00 39.09 3.85
2485 2658 7.639113 AGTTTCAACACTTGGAGTATCAAAA 57.361 32.000 0.00 0.00 36.25 2.44
2491 2665 7.556275 TCAACACTTGGAGTATCAAAATATCCC 59.444 37.037 0.00 0.00 36.25 3.85
2633 2931 2.747396 TTTGCCCTCATGCACATTTC 57.253 45.000 0.00 0.00 41.88 2.17
2644 2942 4.701171 TCATGCACATTTCTGTAGCAATCA 59.299 37.500 0.00 0.00 40.36 2.57
2682 2980 5.572896 GCTAACACATGCCAACTTTTATGAC 59.427 40.000 0.00 0.00 0.00 3.06
2684 2982 5.376854 ACACATGCCAACTTTTATGACTC 57.623 39.130 0.00 0.00 0.00 3.36
2688 2986 5.047802 ACATGCCAACTTTTATGACTCCTTG 60.048 40.000 0.00 0.00 0.00 3.61
2707 3005 5.418840 TCCTTGCAGAAGATAAACAATTCCC 59.581 40.000 0.00 0.00 0.00 3.97
2769 3067 2.789893 CCTTCGAGCATTACTACTTCGC 59.210 50.000 0.00 0.00 0.00 4.70
3080 3380 2.404186 ATCAGCGAGTACGGCGTCA 61.404 57.895 19.21 0.00 40.15 4.35
3431 3731 1.370587 CGAGGAGGACGACAGGTCTC 61.371 65.000 0.00 0.00 45.35 3.36
3485 3785 1.271102 GTCGGCAGTCTGAGAGTTCTT 59.729 52.381 3.32 0.00 0.00 2.52
3559 3859 9.110617 GTTGCATTTGAGATTATATTCATCACG 57.889 33.333 0.00 0.00 0.00 4.35
3567 3867 7.124147 TGAGATTATATTCATCACGCTCCCATA 59.876 37.037 0.00 0.00 0.00 2.74
3589 3901 8.258007 CCATATTGTACTTTCCTTCACTCAGTA 58.742 37.037 0.00 0.00 0.00 2.74
3601 3913 7.788026 TCCTTCACTCAGTAACTACAAAGAAA 58.212 34.615 0.00 0.00 0.00 2.52
3602 3914 8.429641 TCCTTCACTCAGTAACTACAAAGAAAT 58.570 33.333 0.00 0.00 0.00 2.17
3637 3949 6.411630 TTTTTCCGTTTGTATCGATACCAG 57.588 37.500 28.17 17.46 32.33 4.00
3642 3954 4.986034 CCGTTTGTATCGATACCAGCATTA 59.014 41.667 28.17 8.95 32.33 1.90
3643 3955 5.107607 CCGTTTGTATCGATACCAGCATTAC 60.108 44.000 28.17 13.65 32.33 1.89
3644 3956 5.460748 CGTTTGTATCGATACCAGCATTACA 59.539 40.000 28.17 10.04 32.33 2.41
3645 3957 6.561533 CGTTTGTATCGATACCAGCATTACAC 60.562 42.308 28.17 12.68 32.33 2.90
3646 3958 5.523438 TGTATCGATACCAGCATTACACA 57.477 39.130 28.17 8.85 32.33 3.72
3647 3959 5.286438 TGTATCGATACCAGCATTACACAC 58.714 41.667 28.17 5.77 32.33 3.82
3648 3960 3.878160 TCGATACCAGCATTACACACA 57.122 42.857 0.00 0.00 0.00 3.72
3649 3961 3.517602 TCGATACCAGCATTACACACAC 58.482 45.455 0.00 0.00 0.00 3.82
3650 3962 3.056465 TCGATACCAGCATTACACACACA 60.056 43.478 0.00 0.00 0.00 3.72
3678 3990 4.582869 ACAGAGTTGTGTGCATCATACAT 58.417 39.130 0.00 0.00 35.58 2.29
3743 4055 8.948631 TCGCTCTTATCTGATTGTAAGATTTT 57.051 30.769 0.00 0.00 36.61 1.82
3744 4056 9.035607 TCGCTCTTATCTGATTGTAAGATTTTC 57.964 33.333 0.00 0.00 36.61 2.29
3810 4124 9.473007 TTTGAAAGGAACACATCATATATTCCA 57.527 29.630 4.28 0.00 41.15 3.53
3811 4125 9.645128 TTGAAAGGAACACATCATATATTCCAT 57.355 29.630 4.28 0.00 41.15 3.41
3812 4126 9.645128 TGAAAGGAACACATCATATATTCCATT 57.355 29.630 4.28 0.00 41.15 3.16
3829 4143 6.569179 TTCCATTAACTTAACAAGCTGGAC 57.431 37.500 0.00 0.00 31.58 4.02
3830 4144 4.693566 TCCATTAACTTAACAAGCTGGACG 59.306 41.667 0.00 0.00 0.00 4.79
3831 4145 4.454504 CCATTAACTTAACAAGCTGGACGT 59.545 41.667 0.00 0.00 0.00 4.34
3832 4146 5.382303 CATTAACTTAACAAGCTGGACGTG 58.618 41.667 0.00 0.00 0.00 4.49
3833 4147 1.878953 ACTTAACAAGCTGGACGTGG 58.121 50.000 0.00 0.00 31.20 4.94
3834 4148 1.140252 ACTTAACAAGCTGGACGTGGT 59.860 47.619 0.00 0.00 31.20 4.16
3848 4162 3.625897 TGGTGCCTGTGGGAGTCG 61.626 66.667 0.00 0.00 33.58 4.18
3900 4214 1.796017 TAATGTGGGCCGGACTGATA 58.204 50.000 7.57 0.00 0.00 2.15
3930 4244 7.116948 CGTCAAGATACAAGACAGAAAATCACT 59.883 37.037 0.00 0.00 32.68 3.41
3933 4247 7.913674 AGATACAAGACAGAAAATCACTTCC 57.086 36.000 0.00 0.00 0.00 3.46
3964 4278 2.585247 GACTCCCGTATGCGTGGC 60.585 66.667 1.69 0.00 36.15 5.01
3989 4303 5.169295 GGCAAGTATAGGTGTCCGAATATC 58.831 45.833 0.00 0.00 0.00 1.63
3997 4311 5.485209 AGGTGTCCGAATATCTTATTCCC 57.515 43.478 2.54 0.00 0.00 3.97
4001 4315 6.771267 GGTGTCCGAATATCTTATTCCCTTTT 59.229 38.462 2.54 0.00 0.00 2.27
4029 4343 4.420522 ACCGACTTTGTACAACCCTAAA 57.579 40.909 8.07 0.00 0.00 1.85
4030 4344 4.383173 ACCGACTTTGTACAACCCTAAAG 58.617 43.478 8.07 4.47 36.48 1.85
4035 4349 3.887916 TTGTACAACCCTAAAGCCCTT 57.112 42.857 3.59 0.00 0.00 3.95
4039 4353 1.001269 AACCCTAAAGCCCTTCCGC 60.001 57.895 0.00 0.00 0.00 5.54
4217 4535 2.936032 AGGGCCTGAACCTGGGTC 60.936 66.667 4.50 4.33 36.85 4.46
4231 4549 1.228154 GGGTCAACACTGTGTCCCC 60.228 63.158 20.21 20.41 0.00 4.81
4246 4564 2.590611 TGTCCCCTCTCCATAGTTACCT 59.409 50.000 0.00 0.00 0.00 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.271656 CCGTAGACCGAAGTCAAACCT 59.728 52.381 0.00 0.00 46.15 3.50
4 5 0.599558 CACCCGTAGACCGAAGTCAA 59.400 55.000 0.00 0.00 46.15 3.18
5 6 1.246056 CCACCCGTAGACCGAAGTCA 61.246 60.000 0.00 0.00 46.15 3.41
6 7 1.246737 ACCACCCGTAGACCGAAGTC 61.247 60.000 0.00 0.00 43.89 3.01
9 10 0.827089 TTCACCACCCGTAGACCGAA 60.827 55.000 0.00 0.00 39.56 4.30
10 11 0.827089 TTTCACCACCCGTAGACCGA 60.827 55.000 0.00 0.00 39.56 4.69
11 12 0.033781 TTTTCACCACCCGTAGACCG 59.966 55.000 0.00 0.00 0.00 4.79
12 13 1.071228 AGTTTTCACCACCCGTAGACC 59.929 52.381 0.00 0.00 0.00 3.85
13 14 2.224113 TGAGTTTTCACCACCCGTAGAC 60.224 50.000 0.00 0.00 0.00 2.59
14 15 2.040939 TGAGTTTTCACCACCCGTAGA 58.959 47.619 0.00 0.00 0.00 2.59
15 16 2.140717 GTGAGTTTTCACCACCCGTAG 58.859 52.381 0.00 0.00 46.47 3.51
16 17 2.243602 GTGAGTTTTCACCACCCGTA 57.756 50.000 0.00 0.00 46.47 4.02
17 18 3.089788 GTGAGTTTTCACCACCCGT 57.910 52.632 0.00 0.00 46.47 5.28
34 35 4.203076 GTCCAGGCGCGATACCGT 62.203 66.667 12.10 0.00 38.24 4.83
35 36 2.137425 TATGTCCAGGCGCGATACCG 62.137 60.000 12.10 0.00 39.16 4.02
36 37 0.388649 CTATGTCCAGGCGCGATACC 60.389 60.000 12.10 0.26 0.00 2.73
37 38 0.596577 TCTATGTCCAGGCGCGATAC 59.403 55.000 12.10 0.00 0.00 2.24
38 39 1.269723 CTTCTATGTCCAGGCGCGATA 59.730 52.381 12.10 0.00 0.00 2.92
39 40 0.032678 CTTCTATGTCCAGGCGCGAT 59.967 55.000 12.10 0.00 0.00 4.58
40 41 1.437573 CTTCTATGTCCAGGCGCGA 59.562 57.895 12.10 0.00 0.00 5.87
41 42 1.592669 CCTTCTATGTCCAGGCGCG 60.593 63.158 0.00 0.00 0.00 6.86
42 43 0.178068 TTCCTTCTATGTCCAGGCGC 59.822 55.000 0.00 0.00 0.00 6.53
43 44 1.202580 CCTTCCTTCTATGTCCAGGCG 60.203 57.143 0.00 0.00 0.00 5.52
44 45 1.475930 GCCTTCCTTCTATGTCCAGGC 60.476 57.143 0.00 0.00 38.72 4.85
45 46 2.122768 AGCCTTCCTTCTATGTCCAGG 58.877 52.381 0.00 0.00 0.00 4.45
46 47 2.503356 ACAGCCTTCCTTCTATGTCCAG 59.497 50.000 0.00 0.00 0.00 3.86
47 48 2.501723 GACAGCCTTCCTTCTATGTCCA 59.498 50.000 0.00 0.00 32.78 4.02
48 49 2.482142 CGACAGCCTTCCTTCTATGTCC 60.482 54.545 0.00 0.00 34.89 4.02
49 50 2.815478 CGACAGCCTTCCTTCTATGTC 58.185 52.381 0.00 0.00 34.99 3.06
50 51 1.134670 GCGACAGCCTTCCTTCTATGT 60.135 52.381 0.00 0.00 37.42 2.29
51 52 1.576356 GCGACAGCCTTCCTTCTATG 58.424 55.000 0.00 0.00 37.42 2.23
63 64 1.863454 CATAATGAGTGAGGCGACAGC 59.137 52.381 0.00 0.00 44.18 4.40
64 65 1.863454 GCATAATGAGTGAGGCGACAG 59.137 52.381 0.00 0.00 0.00 3.51
65 66 1.482182 AGCATAATGAGTGAGGCGACA 59.518 47.619 0.00 0.00 0.00 4.35
66 67 2.231215 AGCATAATGAGTGAGGCGAC 57.769 50.000 0.00 0.00 0.00 5.19
67 68 2.959030 ACTAGCATAATGAGTGAGGCGA 59.041 45.455 0.00 0.00 0.00 5.54
68 69 3.377346 ACTAGCATAATGAGTGAGGCG 57.623 47.619 0.00 0.00 0.00 5.52
69 70 4.991687 GGTTACTAGCATAATGAGTGAGGC 59.008 45.833 0.00 0.00 0.00 4.70
70 71 6.219473 CAGGTTACTAGCATAATGAGTGAGG 58.781 44.000 0.00 0.00 0.00 3.86
71 72 6.219473 CCAGGTTACTAGCATAATGAGTGAG 58.781 44.000 0.00 0.00 0.00 3.51
72 73 5.070446 CCCAGGTTACTAGCATAATGAGTGA 59.930 44.000 0.00 0.00 0.00 3.41
73 74 5.070446 TCCCAGGTTACTAGCATAATGAGTG 59.930 44.000 0.00 0.00 0.00 3.51
74 75 5.216622 TCCCAGGTTACTAGCATAATGAGT 58.783 41.667 0.00 0.00 0.00 3.41
75 76 5.788450 CTCCCAGGTTACTAGCATAATGAG 58.212 45.833 0.00 0.00 0.00 2.90
76 77 4.040461 GCTCCCAGGTTACTAGCATAATGA 59.960 45.833 0.00 0.00 33.38 2.57
77 78 4.040952 AGCTCCCAGGTTACTAGCATAATG 59.959 45.833 0.00 0.00 35.63 1.90
78 79 4.235372 AGCTCCCAGGTTACTAGCATAAT 58.765 43.478 0.00 0.00 35.63 1.28
79 80 3.654273 AGCTCCCAGGTTACTAGCATAA 58.346 45.455 0.00 0.00 35.63 1.90
80 81 3.330126 AGCTCCCAGGTTACTAGCATA 57.670 47.619 0.00 0.00 35.63 3.14
81 82 2.182516 AGCTCCCAGGTTACTAGCAT 57.817 50.000 0.00 0.00 35.63 3.79
82 83 1.952621 AAGCTCCCAGGTTACTAGCA 58.047 50.000 0.00 0.00 33.64 3.49
83 84 3.705072 TCTAAAGCTCCCAGGTTACTAGC 59.295 47.826 0.00 0.00 34.42 3.42
84 85 5.187186 TGTTCTAAAGCTCCCAGGTTACTAG 59.813 44.000 0.00 0.00 34.42 2.57
85 86 5.088730 TGTTCTAAAGCTCCCAGGTTACTA 58.911 41.667 0.00 0.00 34.42 1.82
86 87 3.908103 TGTTCTAAAGCTCCCAGGTTACT 59.092 43.478 0.00 0.00 34.42 2.24
87 88 4.281898 TGTTCTAAAGCTCCCAGGTTAC 57.718 45.455 0.00 0.00 34.42 2.50
88 89 4.595781 TCTTGTTCTAAAGCTCCCAGGTTA 59.404 41.667 0.00 0.00 34.42 2.85
89 90 3.394606 TCTTGTTCTAAAGCTCCCAGGTT 59.605 43.478 0.00 0.00 37.57 3.50
90 91 2.979678 TCTTGTTCTAAAGCTCCCAGGT 59.020 45.455 0.00 0.00 0.00 4.00
91 92 3.261897 TCTCTTGTTCTAAAGCTCCCAGG 59.738 47.826 0.00 0.00 0.00 4.45
92 93 4.543590 TCTCTTGTTCTAAAGCTCCCAG 57.456 45.455 0.00 0.00 0.00 4.45
93 94 4.974645 TTCTCTTGTTCTAAAGCTCCCA 57.025 40.909 0.00 0.00 0.00 4.37
94 95 5.392487 GCATTTCTCTTGTTCTAAAGCTCCC 60.392 44.000 0.00 0.00 0.00 4.30
95 96 5.635866 GCATTTCTCTTGTTCTAAAGCTCC 58.364 41.667 0.00 0.00 0.00 4.70
96 97 5.319931 CGCATTTCTCTTGTTCTAAAGCTC 58.680 41.667 0.00 0.00 0.00 4.09
97 98 4.378874 GCGCATTTCTCTTGTTCTAAAGCT 60.379 41.667 0.30 0.00 0.00 3.74
98 99 3.848582 GCGCATTTCTCTTGTTCTAAAGC 59.151 43.478 0.30 0.00 0.00 3.51
99 100 4.084507 CGCGCATTTCTCTTGTTCTAAAG 58.915 43.478 8.75 0.00 0.00 1.85
100 101 3.743911 TCGCGCATTTCTCTTGTTCTAAA 59.256 39.130 8.75 0.00 0.00 1.85
101 102 3.322369 TCGCGCATTTCTCTTGTTCTAA 58.678 40.909 8.75 0.00 0.00 2.10
102 103 2.923655 CTCGCGCATTTCTCTTGTTCTA 59.076 45.455 8.75 0.00 0.00 2.10
103 104 1.728971 CTCGCGCATTTCTCTTGTTCT 59.271 47.619 8.75 0.00 0.00 3.01
104 105 1.461127 ACTCGCGCATTTCTCTTGTTC 59.539 47.619 8.75 0.00 0.00 3.18
105 106 1.512926 ACTCGCGCATTTCTCTTGTT 58.487 45.000 8.75 0.00 0.00 2.83
106 107 1.512926 AACTCGCGCATTTCTCTTGT 58.487 45.000 8.75 0.00 0.00 3.16
107 108 2.601481 AAACTCGCGCATTTCTCTTG 57.399 45.000 8.75 0.00 0.00 3.02
108 109 2.808543 AGAAAACTCGCGCATTTCTCTT 59.191 40.909 20.45 6.64 38.65 2.85
109 110 2.158449 CAGAAAACTCGCGCATTTCTCT 59.842 45.455 22.20 16.01 40.44 3.10
110 111 2.096218 ACAGAAAACTCGCGCATTTCTC 60.096 45.455 22.20 14.66 40.44 2.87
111 112 1.873591 ACAGAAAACTCGCGCATTTCT 59.126 42.857 20.45 20.45 42.49 2.52
112 113 2.316119 ACAGAAAACTCGCGCATTTC 57.684 45.000 8.75 17.60 34.14 2.17
113 114 3.002862 TGTTACAGAAAACTCGCGCATTT 59.997 39.130 8.75 0.61 0.00 2.32
114 115 2.546368 TGTTACAGAAAACTCGCGCATT 59.454 40.909 8.75 0.00 0.00 3.56
115 116 2.139917 TGTTACAGAAAACTCGCGCAT 58.860 42.857 8.75 0.00 0.00 4.73
116 117 1.573026 TGTTACAGAAAACTCGCGCA 58.427 45.000 8.75 0.00 0.00 6.09
117 118 2.656192 TTGTTACAGAAAACTCGCGC 57.344 45.000 0.00 0.00 0.00 6.86
118 119 2.964768 GCTTTGTTACAGAAAACTCGCG 59.035 45.455 0.00 0.00 0.00 5.87
119 120 2.964768 CGCTTTGTTACAGAAAACTCGC 59.035 45.455 0.00 0.00 0.00 5.03
120 121 4.446234 CTCGCTTTGTTACAGAAAACTCG 58.554 43.478 0.00 0.00 0.00 4.18
121 122 4.510340 TCCTCGCTTTGTTACAGAAAACTC 59.490 41.667 0.00 0.00 0.00 3.01
122 123 4.448210 TCCTCGCTTTGTTACAGAAAACT 58.552 39.130 0.00 0.00 0.00 2.66
123 124 4.806342 TCCTCGCTTTGTTACAGAAAAC 57.194 40.909 0.00 0.00 0.00 2.43
124 125 6.205784 CAATTCCTCGCTTTGTTACAGAAAA 58.794 36.000 0.00 0.00 0.00 2.29
125 126 5.278266 CCAATTCCTCGCTTTGTTACAGAAA 60.278 40.000 0.00 0.00 0.00 2.52
126 127 4.215399 CCAATTCCTCGCTTTGTTACAGAA 59.785 41.667 0.00 0.00 0.00 3.02
127 128 3.751175 CCAATTCCTCGCTTTGTTACAGA 59.249 43.478 0.00 0.00 0.00 3.41
128 129 3.119849 CCCAATTCCTCGCTTTGTTACAG 60.120 47.826 0.00 0.00 0.00 2.74
129 130 2.817258 CCCAATTCCTCGCTTTGTTACA 59.183 45.455 0.00 0.00 0.00 2.41
130 131 2.817844 ACCCAATTCCTCGCTTTGTTAC 59.182 45.455 0.00 0.00 0.00 2.50
131 132 3.078837 GACCCAATTCCTCGCTTTGTTA 58.921 45.455 0.00 0.00 0.00 2.41
132 133 1.886542 GACCCAATTCCTCGCTTTGTT 59.113 47.619 0.00 0.00 0.00 2.83
133 134 1.534729 GACCCAATTCCTCGCTTTGT 58.465 50.000 0.00 0.00 0.00 2.83
134 135 0.811281 GGACCCAATTCCTCGCTTTG 59.189 55.000 0.00 0.00 32.24 2.77
135 136 0.698818 AGGACCCAATTCCTCGCTTT 59.301 50.000 0.00 0.00 42.98 3.51
136 137 2.387952 AGGACCCAATTCCTCGCTT 58.612 52.632 0.00 0.00 42.98 4.68
137 138 4.153957 AGGACCCAATTCCTCGCT 57.846 55.556 0.00 0.00 42.98 4.93
150 151 4.468689 CTTTCCCCGGGCGAGGAC 62.469 72.222 17.73 0.00 0.00 3.85
153 154 3.995506 AATGCTTTCCCCGGGCGAG 62.996 63.158 17.73 13.32 0.00 5.03
154 155 3.577334 AAATGCTTTCCCCGGGCGA 62.577 57.895 17.73 11.75 0.00 5.54
155 156 3.068064 AAATGCTTTCCCCGGGCG 61.068 61.111 17.73 9.08 0.00 6.13
156 157 1.948721 CTCAAATGCTTTCCCCGGGC 61.949 60.000 17.73 3.23 0.00 6.13
157 158 1.948721 GCTCAAATGCTTTCCCCGGG 61.949 60.000 15.80 15.80 0.00 5.73
158 159 0.967380 AGCTCAAATGCTTTCCCCGG 60.967 55.000 0.00 0.00 40.93 5.73
159 160 0.453390 GAGCTCAAATGCTTTCCCCG 59.547 55.000 9.40 0.00 44.17 5.73
160 161 1.844687 AGAGCTCAAATGCTTTCCCC 58.155 50.000 17.77 0.00 44.17 4.81
161 162 3.256631 TCAAAGAGCTCAAATGCTTTCCC 59.743 43.478 17.77 0.00 44.17 3.97
162 163 4.510038 TCAAAGAGCTCAAATGCTTTCC 57.490 40.909 17.77 0.00 44.17 3.13
163 164 6.032717 GGTATCAAAGAGCTCAAATGCTTTC 58.967 40.000 17.77 0.00 44.17 2.62
164 165 5.477984 TGGTATCAAAGAGCTCAAATGCTTT 59.522 36.000 17.77 3.39 44.17 3.51
165 166 5.012239 TGGTATCAAAGAGCTCAAATGCTT 58.988 37.500 17.77 0.00 44.17 3.91
167 168 4.156556 TGTGGTATCAAAGAGCTCAAATGC 59.843 41.667 17.77 6.82 0.00 3.56
168 169 5.885230 TGTGGTATCAAAGAGCTCAAATG 57.115 39.130 17.77 11.50 0.00 2.32
169 170 6.240894 TCTTGTGGTATCAAAGAGCTCAAAT 58.759 36.000 17.77 5.98 30.22 2.32
170 171 5.620206 TCTTGTGGTATCAAAGAGCTCAAA 58.380 37.500 17.77 0.00 30.22 2.69
171 172 5.221722 ACTCTTGTGGTATCAAAGAGCTCAA 60.222 40.000 17.77 0.00 31.94 3.02
172 173 4.284490 ACTCTTGTGGTATCAAAGAGCTCA 59.716 41.667 17.77 0.00 31.94 4.26
173 174 4.826556 ACTCTTGTGGTATCAAAGAGCTC 58.173 43.478 19.40 5.27 31.94 4.09
174 175 4.899352 ACTCTTGTGGTATCAAAGAGCT 57.101 40.909 19.40 0.00 31.94 4.09
175 176 5.725362 ACTACTCTTGTGGTATCAAAGAGC 58.275 41.667 19.40 0.00 36.10 4.09
184 185 8.818622 ACAACATAGATACTACTCTTGTGGTA 57.181 34.615 0.00 0.00 42.76 3.25
185 186 7.719871 ACAACATAGATACTACTCTTGTGGT 57.280 36.000 0.00 0.00 40.92 4.16
195 196 9.982651 GCCTCTCAAAATACAACATAGATACTA 57.017 33.333 0.00 0.00 0.00 1.82
196 197 8.709308 AGCCTCTCAAAATACAACATAGATACT 58.291 33.333 0.00 0.00 0.00 2.12
197 198 8.894768 AGCCTCTCAAAATACAACATAGATAC 57.105 34.615 0.00 0.00 0.00 2.24
198 199 9.905713 AAAGCCTCTCAAAATACAACATAGATA 57.094 29.630 0.00 0.00 0.00 1.98
199 200 8.814038 AAAGCCTCTCAAAATACAACATAGAT 57.186 30.769 0.00 0.00 0.00 1.98
200 201 8.103305 AGAAAGCCTCTCAAAATACAACATAGA 58.897 33.333 0.00 0.00 0.00 1.98
201 202 8.273780 AGAAAGCCTCTCAAAATACAACATAG 57.726 34.615 0.00 0.00 0.00 2.23
202 203 8.635765 AAGAAAGCCTCTCAAAATACAACATA 57.364 30.769 0.00 0.00 31.02 2.29
203 204 7.530426 AAGAAAGCCTCTCAAAATACAACAT 57.470 32.000 0.00 0.00 31.02 2.71
204 205 6.959639 AAGAAAGCCTCTCAAAATACAACA 57.040 33.333 0.00 0.00 31.02 3.33
205 206 8.138074 AGAAAAGAAAGCCTCTCAAAATACAAC 58.862 33.333 0.00 0.00 31.02 3.32
206 207 8.137437 CAGAAAAGAAAGCCTCTCAAAATACAA 58.863 33.333 0.00 0.00 31.02 2.41
207 208 7.651808 CAGAAAAGAAAGCCTCTCAAAATACA 58.348 34.615 0.00 0.00 31.02 2.29
208 209 6.584184 GCAGAAAAGAAAGCCTCTCAAAATAC 59.416 38.462 0.00 0.00 31.02 1.89
209 210 6.294731 GGCAGAAAAGAAAGCCTCTCAAAATA 60.295 38.462 0.00 0.00 43.70 1.40
210 211 5.510349 GGCAGAAAAGAAAGCCTCTCAAAAT 60.510 40.000 0.00 0.00 43.70 1.82
211 212 4.202151 GGCAGAAAAGAAAGCCTCTCAAAA 60.202 41.667 0.00 0.00 43.70 2.44
212 213 3.319122 GGCAGAAAAGAAAGCCTCTCAAA 59.681 43.478 0.00 0.00 43.70 2.69
213 214 2.887152 GGCAGAAAAGAAAGCCTCTCAA 59.113 45.455 0.00 0.00 43.70 3.02
214 215 2.508526 GGCAGAAAAGAAAGCCTCTCA 58.491 47.619 0.00 0.00 43.70 3.27
220 221 2.789213 AGGAGAGGCAGAAAAGAAAGC 58.211 47.619 0.00 0.00 0.00 3.51
221 222 6.884280 TTAAAGGAGAGGCAGAAAAGAAAG 57.116 37.500 0.00 0.00 0.00 2.62
222 223 7.417456 GGTTTTAAAGGAGAGGCAGAAAAGAAA 60.417 37.037 0.00 0.00 0.00 2.52
223 224 6.040504 GGTTTTAAAGGAGAGGCAGAAAAGAA 59.959 38.462 0.00 0.00 0.00 2.52
224 225 5.535030 GGTTTTAAAGGAGAGGCAGAAAAGA 59.465 40.000 0.00 0.00 0.00 2.52
225 226 5.536538 AGGTTTTAAAGGAGAGGCAGAAAAG 59.463 40.000 0.00 0.00 0.00 2.27
226 227 5.454966 AGGTTTTAAAGGAGAGGCAGAAAA 58.545 37.500 0.00 0.00 0.00 2.29
227 228 5.061721 AGGTTTTAAAGGAGAGGCAGAAA 57.938 39.130 0.00 0.00 0.00 2.52
228 229 4.724279 AGGTTTTAAAGGAGAGGCAGAA 57.276 40.909 0.00 0.00 0.00 3.02
229 230 5.836024 TTAGGTTTTAAAGGAGAGGCAGA 57.164 39.130 0.00 0.00 0.00 4.26
230 231 6.004574 AGTTTAGGTTTTAAAGGAGAGGCAG 58.995 40.000 0.00 0.00 0.00 4.85
231 232 5.948842 AGTTTAGGTTTTAAAGGAGAGGCA 58.051 37.500 0.00 0.00 0.00 4.75
232 233 7.610692 ACATAGTTTAGGTTTTAAAGGAGAGGC 59.389 37.037 0.00 0.00 0.00 4.70
233 234 9.516546 AACATAGTTTAGGTTTTAAAGGAGAGG 57.483 33.333 0.00 0.00 26.49 3.69
262 263 9.243637 CCTCATCTCGTTAATAAAGAAGAAGAG 57.756 37.037 10.37 10.37 0.00 2.85
263 264 8.750298 ACCTCATCTCGTTAATAAAGAAGAAGA 58.250 33.333 0.00 0.00 0.00 2.87
264 265 8.934507 ACCTCATCTCGTTAATAAAGAAGAAG 57.065 34.615 0.00 0.00 0.00 2.85
274 275 8.398665 GCAAAAGATTTACCTCATCTCGTTAAT 58.601 33.333 0.00 0.00 30.19 1.40
275 276 7.148306 GGCAAAAGATTTACCTCATCTCGTTAA 60.148 37.037 0.00 0.00 30.19 2.01
276 277 6.315393 GGCAAAAGATTTACCTCATCTCGTTA 59.685 38.462 0.00 0.00 30.19 3.18
277 278 5.123979 GGCAAAAGATTTACCTCATCTCGTT 59.876 40.000 0.00 0.00 30.19 3.85
278 279 4.636206 GGCAAAAGATTTACCTCATCTCGT 59.364 41.667 0.00 0.00 30.19 4.18
279 280 4.878397 AGGCAAAAGATTTACCTCATCTCG 59.122 41.667 0.00 0.00 30.19 4.04
280 281 5.298026 GGAGGCAAAAGATTTACCTCATCTC 59.702 44.000 18.92 3.54 41.71 2.75
281 282 5.196695 GGAGGCAAAAGATTTACCTCATCT 58.803 41.667 18.92 0.00 41.71 2.90
282 283 4.339530 GGGAGGCAAAAGATTTACCTCATC 59.660 45.833 18.92 10.01 41.71 2.92
283 284 4.017130 AGGGAGGCAAAAGATTTACCTCAT 60.017 41.667 18.92 8.18 41.71 2.90
284 285 3.333680 AGGGAGGCAAAAGATTTACCTCA 59.666 43.478 18.92 0.00 41.71 3.86
285 286 3.969553 AGGGAGGCAAAAGATTTACCTC 58.030 45.455 11.92 11.92 40.36 3.85
286 287 4.404185 AAGGGAGGCAAAAGATTTACCT 57.596 40.909 0.00 0.00 31.64 3.08
287 288 6.436218 TCTTAAAGGGAGGCAAAAGATTTACC 59.564 38.462 0.00 0.00 0.00 2.85
288 289 7.462571 TCTTAAAGGGAGGCAAAAGATTTAC 57.537 36.000 0.00 0.00 0.00 2.01
289 290 8.485578 TTTCTTAAAGGGAGGCAAAAGATTTA 57.514 30.769 0.00 0.00 0.00 1.40
290 291 6.994421 TTCTTAAAGGGAGGCAAAAGATTT 57.006 33.333 0.00 0.00 0.00 2.17
291 292 6.994421 TTTCTTAAAGGGAGGCAAAAGATT 57.006 33.333 0.00 0.00 0.00 2.40
292 293 6.994421 TTTTCTTAAAGGGAGGCAAAAGAT 57.006 33.333 0.00 0.00 0.00 2.40
293 294 6.994421 ATTTTCTTAAAGGGAGGCAAAAGA 57.006 33.333 0.00 0.00 0.00 2.52
294 295 9.725019 ATTTATTTTCTTAAAGGGAGGCAAAAG 57.275 29.630 0.00 0.00 0.00 2.27
295 296 9.500785 CATTTATTTTCTTAAAGGGAGGCAAAA 57.499 29.630 0.00 0.00 0.00 2.44
296 297 8.875168 TCATTTATTTTCTTAAAGGGAGGCAAA 58.125 29.630 0.00 0.00 0.00 3.68
297 298 8.429237 TCATTTATTTTCTTAAAGGGAGGCAA 57.571 30.769 0.00 0.00 0.00 4.52
298 299 8.608185 ATCATTTATTTTCTTAAAGGGAGGCA 57.392 30.769 0.00 0.00 0.00 4.75
317 318 8.847196 CATCTGTGGAAGTTCATCATATCATTT 58.153 33.333 5.01 0.00 0.00 2.32
318 319 7.040617 GCATCTGTGGAAGTTCATCATATCATT 60.041 37.037 5.01 0.00 0.00 2.57
417 430 2.684843 CGGCTGTTGCTTCTCTGCC 61.685 63.158 0.00 0.00 42.49 4.85
420 433 2.359230 GGCGGCTGTTGCTTCTCT 60.359 61.111 0.00 0.00 39.59 3.10
421 434 2.669569 TGGCGGCTGTTGCTTCTC 60.670 61.111 11.43 0.00 39.59 2.87
507 523 1.541147 ACCGTGTTGGCTGATTTGATG 59.459 47.619 0.00 0.00 43.94 3.07
511 527 1.909700 ATGACCGTGTTGGCTGATTT 58.090 45.000 0.00 0.00 43.94 2.17
544 560 2.549754 GGGATGATGACTTGGTATTGCG 59.450 50.000 0.00 0.00 0.00 4.85
567 585 2.033801 GCATGTGTCTCAAGCTGTTTGT 59.966 45.455 4.16 0.00 37.71 2.83
725 784 0.820226 TCTTCTCCATCTGCGTCAGG 59.180 55.000 6.95 0.00 31.51 3.86
733 792 1.045911 GGCGTCCCTCTTCTCCATCT 61.046 60.000 0.00 0.00 0.00 2.90
815 875 1.323271 TTTTCAAAGGCCGGTGTGCA 61.323 50.000 1.90 0.00 0.00 4.57
931 1013 3.326006 TGGACTGAGAGCTCTGTGATTTT 59.674 43.478 23.91 0.00 40.98 1.82
1030 1119 1.755380 GACCAGTAAGGCCACTACGAT 59.245 52.381 5.01 0.00 43.14 3.73
1050 1139 1.287730 GAACCTCACACGAGCAGCAG 61.288 60.000 0.00 0.00 38.00 4.24
1086 1175 1.326213 CGAGGGAGTCCAGCACATCT 61.326 60.000 12.30 0.00 34.83 2.90
1791 1955 1.889829 CCGAGGTACATGAGGATCCTC 59.110 57.143 31.59 31.59 43.01 3.71
2222 2386 2.573689 GGAACTCGTCGTCGCTCG 60.574 66.667 0.00 3.89 41.41 5.03
2381 2545 2.156917 TGTAACGAGAAGAGCGAAGGA 58.843 47.619 0.00 0.00 0.00 3.36
2391 2559 7.147312 TCTCCGACTTTTTATTGTAACGAGAA 58.853 34.615 0.00 0.00 0.00 2.87
2405 2573 7.715686 AGTTTGTATTTCTCTTCTCCGACTTTT 59.284 33.333 0.00 0.00 0.00 2.27
2408 2576 6.159988 CAGTTTGTATTTCTCTTCTCCGACT 58.840 40.000 0.00 0.00 0.00 4.18
2429 2599 3.808466 ATCGATGTGATGTGTAGCAGT 57.192 42.857 0.00 0.00 35.45 4.40
2446 2619 7.273381 AGTGTTGAAACTTTCTTGTTTGAATCG 59.727 33.333 3.22 0.00 39.86 3.34
2506 2680 5.923733 ATCTCTTCGAGTTTCCTGTACAT 57.076 39.130 0.00 0.00 0.00 2.29
2513 2687 6.579865 TGGGTATTAATCTCTTCGAGTTTCC 58.420 40.000 0.00 0.00 0.00 3.13
2537 2711 8.038862 ACTTTCAGACCATATATCCAGTGAAT 57.961 34.615 0.00 0.00 0.00 2.57
2548 2722 6.884295 TCGAATTTCCAACTTTCAGACCATAT 59.116 34.615 0.00 0.00 0.00 1.78
2633 2931 7.132863 CAGATTGTTCATGATGATTGCTACAG 58.867 38.462 0.00 0.00 0.00 2.74
2644 2942 6.679638 GCATGTGTTAGCAGATTGTTCATGAT 60.680 38.462 0.00 0.00 34.14 2.45
2682 2980 6.405176 GGGAATTGTTTATCTTCTGCAAGGAG 60.405 42.308 0.00 0.00 42.67 3.69
2684 2982 5.654497 GGGAATTGTTTATCTTCTGCAAGG 58.346 41.667 0.00 0.00 0.00 3.61
2688 2986 5.757850 ATCGGGAATTGTTTATCTTCTGC 57.242 39.130 0.00 0.00 0.00 4.26
2707 3005 5.165911 ACTAATGCATGCAGAAAGAATCG 57.834 39.130 26.69 8.65 0.00 3.34
2748 3046 2.789893 GCGAAGTAGTAATGCTCGAAGG 59.210 50.000 4.86 0.00 0.00 3.46
2762 3060 6.812656 TCGGAATAACATTTTACTGCGAAGTA 59.187 34.615 0.00 0.00 34.86 2.24
2763 3061 5.640357 TCGGAATAACATTTTACTGCGAAGT 59.360 36.000 0.00 0.00 34.86 3.01
2764 3062 6.102006 TCGGAATAACATTTTACTGCGAAG 57.898 37.500 0.00 0.00 34.86 3.79
2769 3067 5.712217 TCGCTCGGAATAACATTTTACTG 57.288 39.130 0.00 0.00 0.00 2.74
2881 3181 4.077184 TCGGCCACCTTGGTAGCG 62.077 66.667 2.24 1.07 40.46 4.26
3431 3731 0.320683 TGTCACGCTTCCATGGACAG 60.321 55.000 15.91 15.73 33.88 3.51
3485 3785 1.847328 TAGCACCGATCAGAGGTTGA 58.153 50.000 0.00 0.00 40.59 3.18
3559 3859 5.297029 GTGAAGGAAAGTACAATATGGGAGC 59.703 44.000 0.00 0.00 0.00 4.70
3567 3867 7.736893 AGTTACTGAGTGAAGGAAAGTACAAT 58.263 34.615 0.00 0.00 0.00 2.71
3625 3937 5.175126 GTGTGTGTAATGCTGGTATCGATAC 59.825 44.000 24.49 24.49 0.00 2.24
3629 3941 3.062099 GTGTGTGTGTAATGCTGGTATCG 59.938 47.826 0.00 0.00 0.00 2.92
3637 3949 2.096657 TGTGTGTGTGTGTGTGTAATGC 59.903 45.455 0.00 0.00 0.00 3.56
3642 3954 1.001974 ACTCTGTGTGTGTGTGTGTGT 59.998 47.619 0.00 0.00 0.00 3.72
3643 3955 1.725641 ACTCTGTGTGTGTGTGTGTG 58.274 50.000 0.00 0.00 0.00 3.82
3644 3956 2.076100 CAACTCTGTGTGTGTGTGTGT 58.924 47.619 0.00 0.00 0.00 3.72
3645 3957 2.076100 ACAACTCTGTGTGTGTGTGTG 58.924 47.619 0.00 0.00 33.30 3.82
3646 3958 2.076100 CACAACTCTGTGTGTGTGTGT 58.924 47.619 12.64 0.12 46.68 3.72
3647 3959 2.811902 CACAACTCTGTGTGTGTGTG 57.188 50.000 12.64 7.46 46.68 3.82
3678 3990 9.093970 CGTGAGTATTATTTCCATGAACAGTTA 57.906 33.333 0.00 0.00 0.00 2.24
3699 4011 0.522180 AGTAGTCCGTTGAGCGTGAG 59.478 55.000 0.00 0.00 39.32 3.51
3712 4024 6.067263 ACAATCAGATAAGAGCGAGTAGTC 57.933 41.667 0.00 0.00 0.00 2.59
3784 4098 9.473007 TGGAATATATGATGTGTTCCTTTCAAA 57.527 29.630 16.23 0.00 39.21 2.69
3785 4099 9.645128 ATGGAATATATGATGTGTTCCTTTCAA 57.355 29.630 16.23 0.00 39.21 2.69
3786 4100 9.645128 AATGGAATATATGATGTGTTCCTTTCA 57.355 29.630 16.23 0.00 39.21 2.69
3803 4117 8.903820 GTCCAGCTTGTTAAGTTAATGGAATAT 58.096 33.333 13.88 0.00 37.34 1.28
3804 4118 7.065324 CGTCCAGCTTGTTAAGTTAATGGAATA 59.935 37.037 13.88 0.00 37.34 1.75
3805 4119 6.128007 CGTCCAGCTTGTTAAGTTAATGGAAT 60.128 38.462 13.88 0.00 37.34 3.01
3806 4120 5.180492 CGTCCAGCTTGTTAAGTTAATGGAA 59.820 40.000 13.88 2.02 37.34 3.53
3807 4121 4.693566 CGTCCAGCTTGTTAAGTTAATGGA 59.306 41.667 9.79 9.79 33.33 3.41
3808 4122 4.454504 ACGTCCAGCTTGTTAAGTTAATGG 59.545 41.667 0.00 2.51 0.00 3.16
3809 4123 5.382303 CACGTCCAGCTTGTTAAGTTAATG 58.618 41.667 0.00 0.00 0.00 1.90
3810 4124 4.454504 CCACGTCCAGCTTGTTAAGTTAAT 59.545 41.667 0.00 0.00 0.00 1.40
3811 4125 3.810941 CCACGTCCAGCTTGTTAAGTTAA 59.189 43.478 0.00 0.00 0.00 2.01
3812 4126 3.181463 ACCACGTCCAGCTTGTTAAGTTA 60.181 43.478 0.00 0.00 0.00 2.24
3813 4127 2.218603 CCACGTCCAGCTTGTTAAGTT 58.781 47.619 0.00 0.00 0.00 2.66
3814 4128 1.140252 ACCACGTCCAGCTTGTTAAGT 59.860 47.619 0.00 0.00 0.00 2.24
3815 4129 1.531149 CACCACGTCCAGCTTGTTAAG 59.469 52.381 0.00 0.00 0.00 1.85
3816 4130 1.588674 CACCACGTCCAGCTTGTTAA 58.411 50.000 0.00 0.00 0.00 2.01
3817 4131 0.882927 GCACCACGTCCAGCTTGTTA 60.883 55.000 0.00 0.00 0.00 2.41
3818 4132 2.186826 GCACCACGTCCAGCTTGTT 61.187 57.895 0.00 0.00 0.00 2.83
3819 4133 2.591715 GCACCACGTCCAGCTTGT 60.592 61.111 0.00 0.00 0.00 3.16
3820 4134 3.357079 GGCACCACGTCCAGCTTG 61.357 66.667 0.00 0.00 0.00 4.01
3821 4135 3.560251 AGGCACCACGTCCAGCTT 61.560 61.111 0.00 0.00 0.00 3.74
3822 4136 4.320456 CAGGCACCACGTCCAGCT 62.320 66.667 0.00 0.00 0.00 4.24
3823 4137 4.626081 ACAGGCACCACGTCCAGC 62.626 66.667 0.00 0.00 0.00 4.85
3824 4138 2.666190 CACAGGCACCACGTCCAG 60.666 66.667 0.00 0.00 0.00 3.86
3825 4139 4.248842 CCACAGGCACCACGTCCA 62.249 66.667 0.00 0.00 0.00 4.02
3827 4141 3.883744 CTCCCACAGGCACCACGTC 62.884 68.421 0.00 0.00 0.00 4.34
3828 4142 3.941188 CTCCCACAGGCACCACGT 61.941 66.667 0.00 0.00 0.00 4.49
3829 4143 3.883744 GACTCCCACAGGCACCACG 62.884 68.421 0.00 0.00 0.00 4.94
3830 4144 2.032681 GACTCCCACAGGCACCAC 59.967 66.667 0.00 0.00 0.00 4.16
3831 4145 3.625897 CGACTCCCACAGGCACCA 61.626 66.667 0.00 0.00 0.00 4.17
3832 4146 3.626924 ACGACTCCCACAGGCACC 61.627 66.667 0.00 0.00 0.00 5.01
3833 4147 2.357517 CACGACTCCCACAGGCAC 60.358 66.667 0.00 0.00 0.00 5.01
3834 4148 3.625897 CCACGACTCCCACAGGCA 61.626 66.667 0.00 0.00 0.00 4.75
3879 4193 0.035820 TCAGTCCGGCCCACATTAAC 60.036 55.000 0.00 0.00 0.00 2.01
3900 4214 1.899814 TGTCTTGTATCTTGACGGCCT 59.100 47.619 0.00 0.00 33.81 5.19
3964 4278 1.754803 TCGGACACCTATACTTGCCAG 59.245 52.381 0.00 0.00 0.00 4.85
3989 4303 7.654568 AGTCGGTTTTACAAAAAGGGAATAAG 58.345 34.615 0.00 0.00 0.00 1.73
3997 4311 8.367396 GTTGTACAAAGTCGGTTTTACAAAAAG 58.633 33.333 10.51 0.00 35.61 2.27
4001 4315 5.163673 GGGTTGTACAAAGTCGGTTTTACAA 60.164 40.000 10.51 0.00 33.72 2.41
4029 4343 2.016905 ATATAGACAGCGGAAGGGCT 57.983 50.000 0.00 0.00 46.13 5.19
4030 4344 3.955650 TTATATAGACAGCGGAAGGGC 57.044 47.619 0.00 0.00 0.00 5.19
4039 4353 6.906157 TTACCCTCCGGTTTATATAGACAG 57.094 41.667 0.00 1.71 40.58 3.51
4061 4375 2.564947 GTGATCCTGCCTCCGATCTATT 59.435 50.000 0.00 0.00 36.62 1.73
4062 4376 2.175202 GTGATCCTGCCTCCGATCTAT 58.825 52.381 0.00 0.00 36.62 1.98
4103 4421 4.544651 GAGATCGATTCGGTTAACCCTAC 58.455 47.826 19.09 7.28 0.00 3.18
4217 4535 0.035458 GGAGAGGGGACACAGTGTTG 59.965 60.000 7.86 0.00 0.00 3.33
4231 4549 6.325028 TGAGGATCAAAGGTAACTATGGAGAG 59.675 42.308 0.00 0.00 46.95 3.20
4319 4637 4.471904 TGATACAACGGAGCTCTCAATT 57.528 40.909 14.64 0.11 0.00 2.32
4405 4726 3.385193 ACACAAAAACTTGCCCATAGC 57.615 42.857 0.00 0.00 44.14 2.97
4407 4728 4.080863 ACCAAACACAAAAACTTGCCCATA 60.081 37.500 0.00 0.00 0.00 2.74
4408 4729 3.277715 CCAAACACAAAAACTTGCCCAT 58.722 40.909 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.