Multiple sequence alignment - TraesCS5B01G195900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G195900 chr5B 100.000 2740 0 0 1 2740 353919035 353921774 0.000000e+00 5060.0
1 TraesCS5B01G195900 chr5B 88.462 1144 119 7 1299 2431 353043812 353044953 0.000000e+00 1369.0
2 TraesCS5B01G195900 chr5B 100.000 394 0 0 3048 3441 353922082 353922475 0.000000e+00 728.0
3 TraesCS5B01G195900 chr5B 88.777 597 56 8 287 877 507635374 507635965 0.000000e+00 721.0
4 TraesCS5B01G195900 chr5D 98.791 1654 12 2 881 2534 308625640 308627285 0.000000e+00 2937.0
5 TraesCS5B01G195900 chr5D 96.925 878 24 3 1 877 217725153 217726028 0.000000e+00 1469.0
6 TraesCS5B01G195900 chr5D 96.811 878 25 3 1 877 308624608 308625483 0.000000e+00 1463.0
7 TraesCS5B01G195900 chr5D 89.189 1147 111 7 1299 2434 308344812 308345956 0.000000e+00 1419.0
8 TraesCS5B01G195900 chr5D 95.538 381 16 1 3061 3441 308627329 308627708 2.940000e-170 608.0
9 TraesCS5B01G195900 chr5D 85.000 140 20 1 2601 2740 353793809 353793947 1.290000e-29 141.0
10 TraesCS5B01G195900 chr5D 96.825 63 2 0 881 943 217726185 217726247 4.700000e-19 106.0
11 TraesCS5B01G195900 chr5A 97.649 1659 28 3 881 2534 389167417 389165765 0.000000e+00 2837.0
12 TraesCS5B01G195900 chr5A 88.860 1149 111 11 1299 2434 389637057 389635913 0.000000e+00 1397.0
13 TraesCS5B01G195900 chr5A 95.813 621 24 2 1 620 389168618 389167999 0.000000e+00 1002.0
14 TraesCS5B01G195900 chr5A 94.937 632 30 2 1 631 12017420 12016790 0.000000e+00 989.0
15 TraesCS5B01G195900 chr5A 96.169 261 8 2 618 877 389167810 389167551 3.170000e-115 425.0
16 TraesCS5B01G195900 chr5A 93.852 244 14 1 3199 3441 389165613 389165370 1.950000e-97 366.0
17 TraesCS5B01G195900 chr5A 96.703 182 6 0 628 809 12016710 12016529 1.550000e-78 303.0
18 TraesCS5B01G195900 chr5A 92.381 105 8 0 3061 3165 389165721 389165617 2.140000e-32 150.0
19 TraesCS5B01G195900 chr5A 94.521 73 2 1 807 877 12016255 12016183 1.010000e-20 111.0
20 TraesCS5B01G195900 chr5A 96.774 62 2 0 881 942 12016049 12015988 1.690000e-18 104.0
21 TraesCS5B01G195900 chr2B 97.566 945 21 1 1 945 629976633 629975691 0.000000e+00 1616.0
22 TraesCS5B01G195900 chr2B 83.441 465 42 10 134 568 780783378 780783837 1.920000e-107 399.0
23 TraesCS5B01G195900 chr2B 88.199 161 14 4 2 161 780783219 780783375 1.630000e-43 187.0
24 TraesCS5B01G195900 chr2B 82.946 129 18 4 3251 3376 337077778 337077651 2.810000e-21 113.0
25 TraesCS5B01G195900 chr2B 92.105 76 6 0 2533 2608 111915178 111915103 1.310000e-19 108.0
26 TraesCS5B01G195900 chr6B 93.622 878 29 5 1 877 50069557 50068706 0.000000e+00 1286.0
27 TraesCS5B01G195900 chr6B 86.429 140 18 1 2601 2740 672405108 672405246 5.950000e-33 152.0
28 TraesCS5B01G195900 chr6B 96.774 62 2 0 881 942 50068579 50068518 1.690000e-18 104.0
29 TraesCS5B01G195900 chr3A 86.062 904 86 16 2 877 712496645 712495754 0.000000e+00 935.0
30 TraesCS5B01G195900 chr3A 83.115 610 52 22 16 593 744570843 744571433 3.060000e-140 508.0
31 TraesCS5B01G195900 chr3A 90.722 97 9 0 3255 3351 739123047 739123143 2.790000e-26 130.0
32 TraesCS5B01G195900 chr3A 91.304 69 3 3 2 69 724892812 724892746 1.320000e-14 91.6
33 TraesCS5B01G195900 chr1A 92.330 339 25 1 3103 3441 512857865 512858202 6.680000e-132 481.0
34 TraesCS5B01G195900 chr3D 87.812 320 27 7 3133 3441 489529365 489529047 7.020000e-97 364.0
35 TraesCS5B01G195900 chr2D 84.451 328 38 6 3124 3441 585899738 585899414 9.270000e-81 311.0
36 TraesCS5B01G195900 chr2D 92.063 63 5 0 3378 3440 613398216 613398154 4.730000e-14 89.8
37 TraesCS5B01G195900 chr7B 91.367 139 11 1 2601 2739 561081823 561081686 4.530000e-44 189.0
38 TraesCS5B01G195900 chr7B 76.758 327 35 12 82 374 328085068 328084749 9.950000e-31 145.0
39 TraesCS5B01G195900 chr7B 97.333 75 2 0 2533 2607 561081929 561081855 1.000000e-25 128.0
40 TraesCS5B01G195900 chr3B 89.286 140 14 1 2601 2740 18121338 18121200 1.270000e-39 174.0
41 TraesCS5B01G195900 chr3B 85.577 104 13 2 3256 3358 791647459 791647561 1.310000e-19 108.0
42 TraesCS5B01G195900 chr4D 89.209 139 14 1 2601 2739 37285884 37286021 4.570000e-39 172.0
43 TraesCS5B01G195900 chr4D 94.737 76 4 0 2533 2608 282780526 282780601 6.030000e-23 119.0
44 TraesCS5B01G195900 chr7A 89.764 127 12 1 2613 2739 694264511 694264386 9.880000e-36 161.0
45 TraesCS5B01G195900 chr7A 83.571 140 22 1 2601 2740 576235867 576236005 2.790000e-26 130.0
46 TraesCS5B01G195900 chr7A 88.060 67 8 0 3375 3441 32633986 32634052 2.850000e-11 80.5
47 TraesCS5B01G195900 chr1D 85.612 139 19 1 2601 2739 296940187 296940050 9.950000e-31 145.0
48 TraesCS5B01G195900 chr2A 92.105 76 6 0 2533 2608 3338669 3338594 1.310000e-19 108.0
49 TraesCS5B01G195900 chr4A 90.789 76 7 0 2533 2608 544050598 544050523 6.080000e-18 102.0
50 TraesCS5B01G195900 chrUn 82.727 110 19 0 3249 3358 75264955 75265064 7.860000e-17 99.0
51 TraesCS5B01G195900 chr1B 92.647 68 5 0 2540 2607 117938321 117938388 7.860000e-17 99.0
52 TraesCS5B01G195900 chr1B 91.176 68 6 0 2540 2607 118336903 118336836 3.660000e-15 93.5
53 TraesCS5B01G195900 chr4B 92.063 63 5 0 3379 3441 38029375 38029437 4.730000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G195900 chr5B 353919035 353922475 3440 False 2894.000000 5060 100.000000 1 3441 2 chr5B.!!$F3 3440
1 TraesCS5B01G195900 chr5B 353043812 353044953 1141 False 1369.000000 1369 88.462000 1299 2431 1 chr5B.!!$F1 1132
2 TraesCS5B01G195900 chr5B 507635374 507635965 591 False 721.000000 721 88.777000 287 877 1 chr5B.!!$F2 590
3 TraesCS5B01G195900 chr5D 308624608 308627708 3100 False 1669.333333 2937 97.046667 1 3441 3 chr5D.!!$F4 3440
4 TraesCS5B01G195900 chr5D 308344812 308345956 1144 False 1419.000000 1419 89.189000 1299 2434 1 chr5D.!!$F1 1135
5 TraesCS5B01G195900 chr5D 217725153 217726247 1094 False 787.500000 1469 96.875000 1 943 2 chr5D.!!$F3 942
6 TraesCS5B01G195900 chr5A 389635913 389637057 1144 True 1397.000000 1397 88.860000 1299 2434 1 chr5A.!!$R1 1135
7 TraesCS5B01G195900 chr5A 389165370 389168618 3248 True 956.000000 2837 95.172800 1 3441 5 chr5A.!!$R3 3440
8 TraesCS5B01G195900 chr5A 12015988 12017420 1432 True 376.750000 989 95.733750 1 942 4 chr5A.!!$R2 941
9 TraesCS5B01G195900 chr2B 629975691 629976633 942 True 1616.000000 1616 97.566000 1 945 1 chr2B.!!$R3 944
10 TraesCS5B01G195900 chr2B 780783219 780783837 618 False 293.000000 399 85.820000 2 568 2 chr2B.!!$F1 566
11 TraesCS5B01G195900 chr6B 50068518 50069557 1039 True 695.000000 1286 95.198000 1 942 2 chr6B.!!$R1 941
12 TraesCS5B01G195900 chr3A 712495754 712496645 891 True 935.000000 935 86.062000 2 877 1 chr3A.!!$R1 875
13 TraesCS5B01G195900 chr3A 744570843 744571433 590 False 508.000000 508 83.115000 16 593 1 chr3A.!!$F2 577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
412 492 3.963129 ACTTCAGGGACAGTCAAAAACA 58.037 40.909 2.17 0.0 0.00 2.83 F
446 534 4.329801 CCAAACTGAAGTTTTTGCAAGGAC 59.670 41.667 5.70 2.6 45.07 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2029 2842 0.386858 GCGAGAACGTAGTCAGCACA 60.387 55.000 0.0 0.0 45.0 4.57 R
2462 3275 2.213499 AGTCGCACAAAAGAGAACCAG 58.787 47.619 0.0 0.0 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 141 6.881065 TCAGTATGGAAGAGAGTGAAAAATGG 59.119 38.462 0.00 0.00 36.16 3.16
196 227 5.872617 CCACTCTCGGTTGTGATTTGTATTA 59.127 40.000 0.00 0.00 36.38 0.98
412 492 3.963129 ACTTCAGGGACAGTCAAAAACA 58.037 40.909 2.17 0.00 0.00 2.83
446 534 4.329801 CCAAACTGAAGTTTTTGCAAGGAC 59.670 41.667 5.70 2.60 45.07 3.85
535 623 7.039434 AGGAGGCAAAGAAAATTTTAGGAAGAG 60.039 37.037 2.75 0.00 0.00 2.85
836 1478 9.989296 TTAATCATTCCTAGATTTGGGAAGAAA 57.011 29.630 7.18 0.00 45.75 2.52
2468 3281 7.337942 AGTGATACTGAAATTCAATCCTGGTTC 59.662 37.037 0.00 0.00 0.00 3.62
2470 3283 7.554118 TGATACTGAAATTCAATCCTGGTTCTC 59.446 37.037 0.00 0.00 0.00 2.87
2534 3347 7.671495 AGGAAAATAATTTTTGCATGTGTCC 57.329 32.000 3.81 0.00 43.38 4.02
2535 3348 7.452562 AGGAAAATAATTTTTGCATGTGTCCT 58.547 30.769 3.81 0.00 43.38 3.85
2536 3349 7.603784 AGGAAAATAATTTTTGCATGTGTCCTC 59.396 33.333 3.81 0.00 43.38 3.71
2537 3350 6.949578 AAATAATTTTTGCATGTGTCCTCG 57.050 33.333 0.00 0.00 0.00 4.63
2538 3351 2.352503 ATTTTTGCATGTGTCCTCGC 57.647 45.000 0.00 0.00 0.00 5.03
2539 3352 0.313672 TTTTTGCATGTGTCCTCGCC 59.686 50.000 0.00 0.00 0.00 5.54
2540 3353 0.537143 TTTTGCATGTGTCCTCGCCT 60.537 50.000 0.00 0.00 0.00 5.52
2541 3354 0.955428 TTTGCATGTGTCCTCGCCTC 60.955 55.000 0.00 0.00 0.00 4.70
2542 3355 2.512515 GCATGTGTCCTCGCCTCC 60.513 66.667 0.00 0.00 0.00 4.30
2544 3357 3.461773 ATGTGTCCTCGCCTCCCG 61.462 66.667 0.00 0.00 38.61 5.14
2545 3358 3.957435 ATGTGTCCTCGCCTCCCGA 62.957 63.158 0.00 0.00 45.15 5.14
2546 3359 4.131088 GTGTCCTCGCCTCCCGAC 62.131 72.222 0.00 0.00 41.89 4.79
2567 3380 2.034221 GGCTTGGCCTTCGGTTCT 59.966 61.111 3.32 0.00 46.69 3.01
2568 3381 2.041115 GGCTTGGCCTTCGGTTCTC 61.041 63.158 3.32 0.00 46.69 2.87
2569 3382 2.041115 GCTTGGCCTTCGGTTCTCC 61.041 63.158 3.32 0.00 0.00 3.71
2570 3383 1.679898 CTTGGCCTTCGGTTCTCCT 59.320 57.895 3.32 0.00 0.00 3.69
2571 3384 0.674895 CTTGGCCTTCGGTTCTCCTG 60.675 60.000 3.32 0.00 0.00 3.86
2572 3385 2.124507 TTGGCCTTCGGTTCTCCTGG 62.125 60.000 3.32 0.00 0.00 4.45
2573 3386 2.436824 GCCTTCGGTTCTCCTGGC 60.437 66.667 0.00 0.00 36.06 4.85
2574 3387 2.960688 GCCTTCGGTTCTCCTGGCT 61.961 63.158 0.00 0.00 38.35 4.75
2575 3388 1.679898 CCTTCGGTTCTCCTGGCTT 59.320 57.895 0.00 0.00 0.00 4.35
2576 3389 0.036875 CCTTCGGTTCTCCTGGCTTT 59.963 55.000 0.00 0.00 0.00 3.51
2577 3390 1.278127 CCTTCGGTTCTCCTGGCTTTA 59.722 52.381 0.00 0.00 0.00 1.85
2578 3391 2.092914 CCTTCGGTTCTCCTGGCTTTAT 60.093 50.000 0.00 0.00 0.00 1.40
2579 3392 3.610911 CTTCGGTTCTCCTGGCTTTATT 58.389 45.455 0.00 0.00 0.00 1.40
2580 3393 4.383770 CCTTCGGTTCTCCTGGCTTTATTA 60.384 45.833 0.00 0.00 0.00 0.98
2581 3394 5.367945 TTCGGTTCTCCTGGCTTTATTAT 57.632 39.130 0.00 0.00 0.00 1.28
2582 3395 4.703897 TCGGTTCTCCTGGCTTTATTATG 58.296 43.478 0.00 0.00 0.00 1.90
2583 3396 3.815401 CGGTTCTCCTGGCTTTATTATGG 59.185 47.826 0.00 0.00 0.00 2.74
2584 3397 4.444306 CGGTTCTCCTGGCTTTATTATGGA 60.444 45.833 0.00 0.00 0.00 3.41
2585 3398 5.635120 GGTTCTCCTGGCTTTATTATGGAT 58.365 41.667 0.00 0.00 0.00 3.41
2586 3399 5.474876 GGTTCTCCTGGCTTTATTATGGATG 59.525 44.000 0.00 0.00 0.00 3.51
2587 3400 6.299141 GTTCTCCTGGCTTTATTATGGATGA 58.701 40.000 0.00 0.00 0.00 2.92
2588 3401 6.708885 TCTCCTGGCTTTATTATGGATGAT 57.291 37.500 0.00 0.00 0.00 2.45
2589 3402 7.095183 TCTCCTGGCTTTATTATGGATGATT 57.905 36.000 0.00 0.00 0.00 2.57
2590 3403 7.529555 TCTCCTGGCTTTATTATGGATGATTT 58.470 34.615 0.00 0.00 0.00 2.17
2591 3404 7.449395 TCTCCTGGCTTTATTATGGATGATTTG 59.551 37.037 0.00 0.00 0.00 2.32
2592 3405 6.494491 TCCTGGCTTTATTATGGATGATTTGG 59.506 38.462 0.00 0.00 0.00 3.28
2593 3406 6.295462 CCTGGCTTTATTATGGATGATTTGGG 60.295 42.308 0.00 0.00 0.00 4.12
2594 3407 5.011943 TGGCTTTATTATGGATGATTTGGGC 59.988 40.000 0.00 0.00 0.00 5.36
2595 3408 5.011943 GGCTTTATTATGGATGATTTGGGCA 59.988 40.000 0.00 0.00 0.00 5.36
2596 3409 6.161381 GCTTTATTATGGATGATTTGGGCAG 58.839 40.000 0.00 0.00 0.00 4.85
2597 3410 5.726980 TTATTATGGATGATTTGGGCAGC 57.273 39.130 0.00 0.00 0.00 5.25
2598 3411 2.752075 TATGGATGATTTGGGCAGCA 57.248 45.000 0.00 0.00 0.00 4.41
2599 3412 1.117150 ATGGATGATTTGGGCAGCAC 58.883 50.000 0.00 0.00 0.00 4.40
2600 3413 1.314534 TGGATGATTTGGGCAGCACG 61.315 55.000 0.00 0.00 0.00 5.34
2601 3414 1.315257 GGATGATTTGGGCAGCACGT 61.315 55.000 0.00 0.00 0.00 4.49
2602 3415 1.378531 GATGATTTGGGCAGCACGTA 58.621 50.000 0.00 0.00 0.00 3.57
2603 3416 1.742831 GATGATTTGGGCAGCACGTAA 59.257 47.619 0.00 0.00 0.00 3.18
2604 3417 1.832883 TGATTTGGGCAGCACGTAAT 58.167 45.000 0.00 0.00 0.00 1.89
2605 3418 1.472082 TGATTTGGGCAGCACGTAATG 59.528 47.619 0.00 0.00 0.00 1.90
2606 3419 1.742831 GATTTGGGCAGCACGTAATGA 59.257 47.619 3.50 0.00 0.00 2.57
2607 3420 0.878416 TTTGGGCAGCACGTAATGAC 59.122 50.000 3.50 0.00 0.00 3.06
2608 3421 0.958382 TTGGGCAGCACGTAATGACC 60.958 55.000 15.58 15.58 45.61 4.02
2609 3422 2.112815 GGGCAGCACGTAATGACCC 61.113 63.158 12.15 12.39 38.82 4.46
2610 3423 1.078426 GGCAGCACGTAATGACCCT 60.078 57.895 3.50 0.00 0.00 4.34
2611 3424 0.676782 GGCAGCACGTAATGACCCTT 60.677 55.000 3.50 0.00 0.00 3.95
2612 3425 1.406341 GGCAGCACGTAATGACCCTTA 60.406 52.381 3.50 0.00 0.00 2.69
2613 3426 1.933853 GCAGCACGTAATGACCCTTAG 59.066 52.381 3.50 0.00 0.00 2.18
2614 3427 2.550978 CAGCACGTAATGACCCTTAGG 58.449 52.381 0.00 0.00 40.04 2.69
2615 3428 2.167693 CAGCACGTAATGACCCTTAGGA 59.832 50.000 0.00 0.00 36.73 2.94
2616 3429 2.835764 AGCACGTAATGACCCTTAGGAA 59.164 45.455 0.00 0.00 36.73 3.36
2617 3430 2.934553 GCACGTAATGACCCTTAGGAAC 59.065 50.000 0.00 0.00 36.73 3.62
2618 3431 3.528532 CACGTAATGACCCTTAGGAACC 58.471 50.000 0.00 0.00 36.73 3.62
2619 3432 3.197116 CACGTAATGACCCTTAGGAACCT 59.803 47.826 0.00 0.00 36.73 3.50
2620 3433 3.842436 ACGTAATGACCCTTAGGAACCTT 59.158 43.478 0.00 0.00 36.73 3.50
2621 3434 5.025453 ACGTAATGACCCTTAGGAACCTTA 58.975 41.667 0.00 0.00 36.73 2.69
2622 3435 5.664457 ACGTAATGACCCTTAGGAACCTTAT 59.336 40.000 0.00 0.00 36.73 1.73
2623 3436 6.157471 ACGTAATGACCCTTAGGAACCTTATT 59.843 38.462 0.00 0.00 36.73 1.40
2624 3437 7.345392 ACGTAATGACCCTTAGGAACCTTATTA 59.655 37.037 0.00 0.00 36.73 0.98
2625 3438 7.654923 CGTAATGACCCTTAGGAACCTTATTAC 59.345 40.741 0.00 5.53 36.73 1.89
2626 3439 7.766736 AATGACCCTTAGGAACCTTATTACT 57.233 36.000 0.00 0.00 36.73 2.24
2627 3440 6.555463 TGACCCTTAGGAACCTTATTACTG 57.445 41.667 0.00 0.00 36.73 2.74
2628 3441 6.027482 TGACCCTTAGGAACCTTATTACTGT 58.973 40.000 0.00 0.00 36.73 3.55
2629 3442 6.502863 TGACCCTTAGGAACCTTATTACTGTT 59.497 38.462 0.00 0.00 36.73 3.16
2630 3443 7.017850 TGACCCTTAGGAACCTTATTACTGTTT 59.982 37.037 0.00 0.00 36.73 2.83
2631 3444 7.762610 ACCCTTAGGAACCTTATTACTGTTTT 58.237 34.615 0.00 0.00 36.73 2.43
2632 3445 8.229605 ACCCTTAGGAACCTTATTACTGTTTTT 58.770 33.333 0.00 0.00 36.73 1.94
2633 3446 8.520351 CCCTTAGGAACCTTATTACTGTTTTTG 58.480 37.037 0.00 0.00 33.47 2.44
2634 3447 8.520351 CCTTAGGAACCTTATTACTGTTTTTGG 58.480 37.037 0.00 0.00 0.00 3.28
2635 3448 9.292195 CTTAGGAACCTTATTACTGTTTTTGGA 57.708 33.333 0.00 0.00 0.00 3.53
2636 3449 9.816787 TTAGGAACCTTATTACTGTTTTTGGAT 57.183 29.630 0.00 0.00 0.00 3.41
2637 3450 8.349568 AGGAACCTTATTACTGTTTTTGGATC 57.650 34.615 0.00 0.00 0.00 3.36
2638 3451 8.170730 AGGAACCTTATTACTGTTTTTGGATCT 58.829 33.333 0.00 0.00 0.00 2.75
2639 3452 8.459635 GGAACCTTATTACTGTTTTTGGATCTC 58.540 37.037 0.00 0.00 0.00 2.75
2640 3453 9.232473 GAACCTTATTACTGTTTTTGGATCTCT 57.768 33.333 0.00 0.00 0.00 3.10
2641 3454 8.567285 ACCTTATTACTGTTTTTGGATCTCTG 57.433 34.615 0.00 0.00 0.00 3.35
2642 3455 7.611855 ACCTTATTACTGTTTTTGGATCTCTGG 59.388 37.037 0.00 0.00 0.00 3.86
2643 3456 7.611855 CCTTATTACTGTTTTTGGATCTCTGGT 59.388 37.037 0.00 0.00 0.00 4.00
2644 3457 8.561738 TTATTACTGTTTTTGGATCTCTGGTC 57.438 34.615 0.00 0.00 0.00 4.02
2645 3458 4.713792 ACTGTTTTTGGATCTCTGGTCT 57.286 40.909 0.00 0.00 0.00 3.85
2646 3459 4.646572 ACTGTTTTTGGATCTCTGGTCTC 58.353 43.478 0.00 0.00 0.00 3.36
2647 3460 4.103153 ACTGTTTTTGGATCTCTGGTCTCA 59.897 41.667 0.00 0.00 0.00 3.27
2648 3461 5.222007 ACTGTTTTTGGATCTCTGGTCTCAT 60.222 40.000 0.00 0.00 0.00 2.90
2649 3462 5.634118 TGTTTTTGGATCTCTGGTCTCATT 58.366 37.500 0.00 0.00 0.00 2.57
2650 3463 5.474532 TGTTTTTGGATCTCTGGTCTCATTG 59.525 40.000 0.00 0.00 0.00 2.82
2651 3464 4.916041 TTTGGATCTCTGGTCTCATTGT 57.084 40.909 0.00 0.00 0.00 2.71
2652 3465 4.478206 TTGGATCTCTGGTCTCATTGTC 57.522 45.455 0.00 0.00 0.00 3.18
2653 3466 3.717576 TGGATCTCTGGTCTCATTGTCT 58.282 45.455 0.00 0.00 0.00 3.41
2654 3467 4.099633 TGGATCTCTGGTCTCATTGTCTT 58.900 43.478 0.00 0.00 0.00 3.01
2655 3468 4.081254 TGGATCTCTGGTCTCATTGTCTTG 60.081 45.833 0.00 0.00 0.00 3.02
2656 3469 4.081198 GGATCTCTGGTCTCATTGTCTTGT 60.081 45.833 0.00 0.00 0.00 3.16
2657 3470 4.263018 TCTCTGGTCTCATTGTCTTGTG 57.737 45.455 0.00 0.00 0.00 3.33
2658 3471 2.740981 CTCTGGTCTCATTGTCTTGTGC 59.259 50.000 0.00 0.00 0.00 4.57
2659 3472 2.104622 TCTGGTCTCATTGTCTTGTGCA 59.895 45.455 0.00 0.00 0.00 4.57
2660 3473 3.079578 CTGGTCTCATTGTCTTGTGCAT 58.920 45.455 0.00 0.00 0.00 3.96
2661 3474 3.489355 TGGTCTCATTGTCTTGTGCATT 58.511 40.909 0.00 0.00 0.00 3.56
2662 3475 3.503363 TGGTCTCATTGTCTTGTGCATTC 59.497 43.478 0.00 0.00 0.00 2.67
2663 3476 3.503363 GGTCTCATTGTCTTGTGCATTCA 59.497 43.478 0.00 0.00 0.00 2.57
2664 3477 4.470462 GTCTCATTGTCTTGTGCATTCAC 58.530 43.478 0.00 0.00 43.40 3.18
2675 3488 3.988379 GTGCATTCACAAGACAAGGAA 57.012 42.857 0.00 0.00 42.66 3.36
2676 3489 3.893720 GTGCATTCACAAGACAAGGAAG 58.106 45.455 0.00 0.00 42.66 3.46
2677 3490 3.565482 GTGCATTCACAAGACAAGGAAGA 59.435 43.478 0.00 0.00 42.66 2.87
2678 3491 3.565482 TGCATTCACAAGACAAGGAAGAC 59.435 43.478 0.00 0.00 0.00 3.01
2679 3492 3.364366 GCATTCACAAGACAAGGAAGACG 60.364 47.826 0.00 0.00 0.00 4.18
2680 3493 1.865865 TCACAAGACAAGGAAGACGC 58.134 50.000 0.00 0.00 0.00 5.19
2681 3494 0.868406 CACAAGACAAGGAAGACGCC 59.132 55.000 0.00 0.00 0.00 5.68
2682 3495 0.759346 ACAAGACAAGGAAGACGCCT 59.241 50.000 0.00 0.00 40.93 5.52
2684 3497 1.801178 CAAGACAAGGAAGACGCCTTC 59.199 52.381 2.41 2.41 44.89 3.46
2685 3498 1.343069 AGACAAGGAAGACGCCTTCT 58.657 50.000 11.41 0.00 44.89 2.85
2686 3499 1.273886 AGACAAGGAAGACGCCTTCTC 59.726 52.381 11.41 1.16 44.89 2.87
2687 3500 0.038159 ACAAGGAAGACGCCTTCTCG 60.038 55.000 11.41 3.07 44.89 4.04
2688 3501 0.038159 CAAGGAAGACGCCTTCTCGT 60.038 55.000 11.41 0.00 44.89 4.18
2689 3502 0.038159 AAGGAAGACGCCTTCTCGTG 60.038 55.000 11.41 0.00 44.89 4.35
2690 3503 1.446272 GGAAGACGCCTTCTCGTGG 60.446 63.158 11.41 0.00 46.16 4.94
2691 3504 2.048127 AAGACGCCTTCTCGTGGC 60.048 61.111 0.00 0.00 43.42 5.01
2697 3510 3.764466 CCTTCTCGTGGCGCTCCT 61.764 66.667 7.64 0.00 0.00 3.69
2698 3511 2.415608 CCTTCTCGTGGCGCTCCTA 61.416 63.158 7.64 0.00 0.00 2.94
2699 3512 1.226717 CTTCTCGTGGCGCTCCTAC 60.227 63.158 7.64 0.72 0.00 3.18
2700 3513 2.615262 CTTCTCGTGGCGCTCCTACC 62.615 65.000 7.64 0.00 0.00 3.18
2701 3514 3.141488 CTCGTGGCGCTCCTACCT 61.141 66.667 7.64 0.00 0.00 3.08
2702 3515 3.127352 CTCGTGGCGCTCCTACCTC 62.127 68.421 7.64 0.00 0.00 3.85
2703 3516 3.141488 CGTGGCGCTCCTACCTCT 61.141 66.667 7.64 0.00 0.00 3.69
2704 3517 2.809010 GTGGCGCTCCTACCTCTC 59.191 66.667 7.64 0.00 0.00 3.20
2705 3518 1.755008 GTGGCGCTCCTACCTCTCT 60.755 63.158 7.64 0.00 0.00 3.10
2706 3519 1.754621 TGGCGCTCCTACCTCTCTG 60.755 63.158 7.64 0.00 0.00 3.35
2707 3520 2.415426 GCGCTCCTACCTCTCTGC 59.585 66.667 0.00 0.00 0.00 4.26
2708 3521 2.418910 GCGCTCCTACCTCTCTGCA 61.419 63.158 0.00 0.00 0.00 4.41
2709 3522 1.435515 CGCTCCTACCTCTCTGCAC 59.564 63.158 0.00 0.00 0.00 4.57
2710 3523 1.435515 GCTCCTACCTCTCTGCACG 59.564 63.158 0.00 0.00 0.00 5.34
2711 3524 1.316706 GCTCCTACCTCTCTGCACGT 61.317 60.000 0.00 0.00 0.00 4.49
2712 3525 1.178276 CTCCTACCTCTCTGCACGTT 58.822 55.000 0.00 0.00 0.00 3.99
2713 3526 2.366533 CTCCTACCTCTCTGCACGTTA 58.633 52.381 0.00 0.00 0.00 3.18
2714 3527 2.089980 TCCTACCTCTCTGCACGTTAC 58.910 52.381 0.00 0.00 0.00 2.50
2715 3528 1.816835 CCTACCTCTCTGCACGTTACA 59.183 52.381 0.00 0.00 0.00 2.41
2716 3529 2.415625 CCTACCTCTCTGCACGTTACAC 60.416 54.545 0.00 0.00 0.00 2.90
2717 3530 0.317479 ACCTCTCTGCACGTTACACC 59.683 55.000 0.00 0.00 0.00 4.16
2718 3531 0.732880 CCTCTCTGCACGTTACACCG 60.733 60.000 0.00 0.00 0.00 4.94
2719 3532 0.039437 CTCTCTGCACGTTACACCGT 60.039 55.000 0.00 0.00 42.87 4.83
2733 3546 8.931385 ACGTTACACCGTGTCTATATAATTTT 57.069 30.769 7.63 0.00 40.08 1.82
2734 3547 8.810427 ACGTTACACCGTGTCTATATAATTTTG 58.190 33.333 7.63 0.00 40.08 2.44
2735 3548 8.810427 CGTTACACCGTGTCTATATAATTTTGT 58.190 33.333 7.63 0.00 0.00 2.83
2739 3552 9.880157 ACACCGTGTCTATATAATTTTGTACTT 57.120 29.630 0.00 0.00 0.00 2.24
3159 3992 1.041447 ACATCCGCCGCCTAACTAGT 61.041 55.000 0.00 0.00 0.00 2.57
3188 4021 1.434622 GACGCGGTCCGATCTACTCA 61.435 60.000 17.49 0.00 41.02 3.41
3201 4034 1.467342 TCTACTCATCGACGTGTGTGG 59.533 52.381 0.00 10.38 0.00 4.17
3221 4054 0.538057 CCTCCCTTGCAACAAGAGCA 60.538 55.000 8.87 0.00 40.85 4.26
3249 4083 8.147058 TGTTGCAGAAACATTTATAACAATGGT 58.853 29.630 0.00 0.00 43.96 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 141 5.073311 TGTGCAGGTCTAGATTGTCTAAC 57.927 43.478 0.00 0.00 0.00 2.34
384 462 2.879026 GACTGTCCCTGAAGTTCCAAAC 59.121 50.000 0.00 0.00 0.00 2.93
446 534 2.034558 ACGCTGTTTTCAATTGTGGAGG 59.965 45.455 5.13 0.00 0.00 4.30
1897 2704 3.245346 TGGTGGCACCCGATCACA 61.245 61.111 32.61 10.49 37.50 3.58
2029 2842 0.386858 GCGAGAACGTAGTCAGCACA 60.387 55.000 0.00 0.00 45.00 4.57
2462 3275 2.213499 AGTCGCACAAAAGAGAACCAG 58.787 47.619 0.00 0.00 0.00 4.00
2468 3281 3.614616 GGAGTGATAGTCGCACAAAAGAG 59.385 47.826 0.00 0.00 38.70 2.85
2470 3283 3.589988 AGGAGTGATAGTCGCACAAAAG 58.410 45.455 0.00 0.00 38.70 2.27
2558 3371 2.762535 TAAAGCCAGGAGAACCGAAG 57.237 50.000 0.00 0.00 41.83 3.79
2559 3372 3.713826 AATAAAGCCAGGAGAACCGAA 57.286 42.857 0.00 0.00 41.83 4.30
2560 3373 4.444306 CCATAATAAAGCCAGGAGAACCGA 60.444 45.833 0.00 0.00 41.83 4.69
2561 3374 3.815401 CCATAATAAAGCCAGGAGAACCG 59.185 47.826 0.00 0.00 41.83 4.44
2562 3375 5.048846 TCCATAATAAAGCCAGGAGAACC 57.951 43.478 0.00 0.00 0.00 3.62
2563 3376 6.299141 TCATCCATAATAAAGCCAGGAGAAC 58.701 40.000 0.00 0.00 0.00 3.01
2564 3377 6.514012 TCATCCATAATAAAGCCAGGAGAA 57.486 37.500 0.00 0.00 0.00 2.87
2565 3378 6.708885 ATCATCCATAATAAAGCCAGGAGA 57.291 37.500 0.00 0.00 0.00 3.71
2566 3379 7.309621 CCAAATCATCCATAATAAAGCCAGGAG 60.310 40.741 0.00 0.00 0.00 3.69
2567 3380 6.494491 CCAAATCATCCATAATAAAGCCAGGA 59.506 38.462 0.00 0.00 0.00 3.86
2568 3381 6.295462 CCCAAATCATCCATAATAAAGCCAGG 60.295 42.308 0.00 0.00 0.00 4.45
2569 3382 6.694447 CCCAAATCATCCATAATAAAGCCAG 58.306 40.000 0.00 0.00 0.00 4.85
2570 3383 5.011943 GCCCAAATCATCCATAATAAAGCCA 59.988 40.000 0.00 0.00 0.00 4.75
2571 3384 5.011943 TGCCCAAATCATCCATAATAAAGCC 59.988 40.000 0.00 0.00 0.00 4.35
2572 3385 6.100404 TGCCCAAATCATCCATAATAAAGC 57.900 37.500 0.00 0.00 0.00 3.51
2573 3386 6.161381 GCTGCCCAAATCATCCATAATAAAG 58.839 40.000 0.00 0.00 0.00 1.85
2574 3387 5.601729 TGCTGCCCAAATCATCCATAATAAA 59.398 36.000 0.00 0.00 0.00 1.40
2575 3388 5.010922 GTGCTGCCCAAATCATCCATAATAA 59.989 40.000 0.00 0.00 0.00 1.40
2576 3389 4.523943 GTGCTGCCCAAATCATCCATAATA 59.476 41.667 0.00 0.00 0.00 0.98
2577 3390 3.322828 GTGCTGCCCAAATCATCCATAAT 59.677 43.478 0.00 0.00 0.00 1.28
2578 3391 2.694628 GTGCTGCCCAAATCATCCATAA 59.305 45.455 0.00 0.00 0.00 1.90
2579 3392 2.309613 GTGCTGCCCAAATCATCCATA 58.690 47.619 0.00 0.00 0.00 2.74
2580 3393 1.117150 GTGCTGCCCAAATCATCCAT 58.883 50.000 0.00 0.00 0.00 3.41
2581 3394 1.314534 CGTGCTGCCCAAATCATCCA 61.315 55.000 0.00 0.00 0.00 3.41
2582 3395 1.315257 ACGTGCTGCCCAAATCATCC 61.315 55.000 0.00 0.00 0.00 3.51
2583 3396 1.378531 TACGTGCTGCCCAAATCATC 58.621 50.000 0.00 0.00 0.00 2.92
2584 3397 1.832883 TTACGTGCTGCCCAAATCAT 58.167 45.000 0.00 0.00 0.00 2.45
2585 3398 1.472082 CATTACGTGCTGCCCAAATCA 59.528 47.619 0.00 0.00 0.00 2.57
2586 3399 1.742831 TCATTACGTGCTGCCCAAATC 59.257 47.619 0.00 0.00 0.00 2.17
2587 3400 1.472480 GTCATTACGTGCTGCCCAAAT 59.528 47.619 0.00 0.00 0.00 2.32
2588 3401 0.878416 GTCATTACGTGCTGCCCAAA 59.122 50.000 0.00 0.00 0.00 3.28
2589 3402 0.958382 GGTCATTACGTGCTGCCCAA 60.958 55.000 0.00 0.00 0.00 4.12
2590 3403 1.376683 GGTCATTACGTGCTGCCCA 60.377 57.895 0.00 0.00 0.00 5.36
2591 3404 2.112815 GGGTCATTACGTGCTGCCC 61.113 63.158 0.00 7.07 0.00 5.36
2592 3405 0.676782 AAGGGTCATTACGTGCTGCC 60.677 55.000 0.00 1.60 0.00 4.85
2593 3406 1.933853 CTAAGGGTCATTACGTGCTGC 59.066 52.381 0.00 0.00 0.00 5.25
2594 3407 2.167693 TCCTAAGGGTCATTACGTGCTG 59.832 50.000 0.00 0.00 0.00 4.41
2595 3408 2.463752 TCCTAAGGGTCATTACGTGCT 58.536 47.619 0.00 0.00 0.00 4.40
2596 3409 2.934553 GTTCCTAAGGGTCATTACGTGC 59.065 50.000 0.00 0.00 0.00 5.34
2597 3410 3.197116 AGGTTCCTAAGGGTCATTACGTG 59.803 47.826 0.00 0.00 0.00 4.49
2598 3411 3.447950 AGGTTCCTAAGGGTCATTACGT 58.552 45.455 0.00 0.00 0.00 3.57
2599 3412 4.482952 AAGGTTCCTAAGGGTCATTACG 57.517 45.455 0.00 0.00 0.00 3.18
2600 3413 8.712103 AGTAATAAGGTTCCTAAGGGTCATTAC 58.288 37.037 0.00 0.00 0.00 1.89
2601 3414 8.711170 CAGTAATAAGGTTCCTAAGGGTCATTA 58.289 37.037 0.00 0.00 0.00 1.90
2602 3415 7.184022 ACAGTAATAAGGTTCCTAAGGGTCATT 59.816 37.037 0.00 0.00 0.00 2.57
2603 3416 6.677076 ACAGTAATAAGGTTCCTAAGGGTCAT 59.323 38.462 0.00 0.00 0.00 3.06
2604 3417 6.027482 ACAGTAATAAGGTTCCTAAGGGTCA 58.973 40.000 0.00 0.00 0.00 4.02
2605 3418 6.556974 ACAGTAATAAGGTTCCTAAGGGTC 57.443 41.667 0.00 0.00 0.00 4.46
2606 3419 6.964876 AACAGTAATAAGGTTCCTAAGGGT 57.035 37.500 0.00 0.00 0.00 4.34
2607 3420 8.520351 CAAAAACAGTAATAAGGTTCCTAAGGG 58.480 37.037 0.00 0.00 0.00 3.95
2608 3421 8.520351 CCAAAAACAGTAATAAGGTTCCTAAGG 58.480 37.037 0.00 0.00 0.00 2.69
2609 3422 9.292195 TCCAAAAACAGTAATAAGGTTCCTAAG 57.708 33.333 0.00 0.00 0.00 2.18
2610 3423 9.816787 ATCCAAAAACAGTAATAAGGTTCCTAA 57.183 29.630 0.00 0.00 0.00 2.69
2611 3424 9.457436 GATCCAAAAACAGTAATAAGGTTCCTA 57.543 33.333 0.00 0.00 0.00 2.94
2612 3425 8.170730 AGATCCAAAAACAGTAATAAGGTTCCT 58.829 33.333 0.00 0.00 0.00 3.36
2613 3426 8.349568 AGATCCAAAAACAGTAATAAGGTTCC 57.650 34.615 0.00 0.00 0.00 3.62
2614 3427 9.232473 AGAGATCCAAAAACAGTAATAAGGTTC 57.768 33.333 0.00 0.00 0.00 3.62
2615 3428 9.014297 CAGAGATCCAAAAACAGTAATAAGGTT 57.986 33.333 0.00 0.00 0.00 3.50
2616 3429 7.611855 CCAGAGATCCAAAAACAGTAATAAGGT 59.388 37.037 0.00 0.00 0.00 3.50
2617 3430 7.611855 ACCAGAGATCCAAAAACAGTAATAAGG 59.388 37.037 0.00 0.00 0.00 2.69
2618 3431 8.567285 ACCAGAGATCCAAAAACAGTAATAAG 57.433 34.615 0.00 0.00 0.00 1.73
2619 3432 8.383175 AGACCAGAGATCCAAAAACAGTAATAA 58.617 33.333 0.00 0.00 0.00 1.40
2620 3433 7.918076 AGACCAGAGATCCAAAAACAGTAATA 58.082 34.615 0.00 0.00 0.00 0.98
2621 3434 6.784031 AGACCAGAGATCCAAAAACAGTAAT 58.216 36.000 0.00 0.00 0.00 1.89
2622 3435 6.183361 TGAGACCAGAGATCCAAAAACAGTAA 60.183 38.462 0.00 0.00 0.00 2.24
2623 3436 5.306937 TGAGACCAGAGATCCAAAAACAGTA 59.693 40.000 0.00 0.00 0.00 2.74
2624 3437 4.103153 TGAGACCAGAGATCCAAAAACAGT 59.897 41.667 0.00 0.00 0.00 3.55
2625 3438 4.645535 TGAGACCAGAGATCCAAAAACAG 58.354 43.478 0.00 0.00 0.00 3.16
2626 3439 4.705110 TGAGACCAGAGATCCAAAAACA 57.295 40.909 0.00 0.00 0.00 2.83
2627 3440 5.474876 ACAATGAGACCAGAGATCCAAAAAC 59.525 40.000 0.00 0.00 0.00 2.43
2628 3441 5.634118 ACAATGAGACCAGAGATCCAAAAA 58.366 37.500 0.00 0.00 0.00 1.94
2629 3442 5.013495 AGACAATGAGACCAGAGATCCAAAA 59.987 40.000 0.00 0.00 0.00 2.44
2630 3443 4.533707 AGACAATGAGACCAGAGATCCAAA 59.466 41.667 0.00 0.00 0.00 3.28
2631 3444 4.099633 AGACAATGAGACCAGAGATCCAA 58.900 43.478 0.00 0.00 0.00 3.53
2632 3445 3.717576 AGACAATGAGACCAGAGATCCA 58.282 45.455 0.00 0.00 0.00 3.41
2633 3446 4.081198 ACAAGACAATGAGACCAGAGATCC 60.081 45.833 0.00 0.00 0.00 3.36
2634 3447 4.869297 CACAAGACAATGAGACCAGAGATC 59.131 45.833 0.00 0.00 0.00 2.75
2635 3448 4.829968 CACAAGACAATGAGACCAGAGAT 58.170 43.478 0.00 0.00 0.00 2.75
2636 3449 3.555795 GCACAAGACAATGAGACCAGAGA 60.556 47.826 0.00 0.00 0.00 3.10
2637 3450 2.740981 GCACAAGACAATGAGACCAGAG 59.259 50.000 0.00 0.00 0.00 3.35
2638 3451 2.104622 TGCACAAGACAATGAGACCAGA 59.895 45.455 0.00 0.00 0.00 3.86
2639 3452 2.497138 TGCACAAGACAATGAGACCAG 58.503 47.619 0.00 0.00 0.00 4.00
2640 3453 2.636647 TGCACAAGACAATGAGACCA 57.363 45.000 0.00 0.00 0.00 4.02
2641 3454 3.503363 TGAATGCACAAGACAATGAGACC 59.497 43.478 0.00 0.00 0.00 3.85
2642 3455 4.470462 GTGAATGCACAAGACAATGAGAC 58.530 43.478 0.00 0.00 44.51 3.36
2643 3456 4.754372 GTGAATGCACAAGACAATGAGA 57.246 40.909 0.00 0.00 44.51 3.27
2655 3468 3.565482 TCTTCCTTGTCTTGTGAATGCAC 59.435 43.478 0.00 0.00 45.35 4.57
2656 3469 3.565482 GTCTTCCTTGTCTTGTGAATGCA 59.435 43.478 0.00 0.00 0.00 3.96
2657 3470 3.364366 CGTCTTCCTTGTCTTGTGAATGC 60.364 47.826 0.00 0.00 0.00 3.56
2658 3471 3.364366 GCGTCTTCCTTGTCTTGTGAATG 60.364 47.826 0.00 0.00 0.00 2.67
2659 3472 2.808543 GCGTCTTCCTTGTCTTGTGAAT 59.191 45.455 0.00 0.00 0.00 2.57
2660 3473 2.210116 GCGTCTTCCTTGTCTTGTGAA 58.790 47.619 0.00 0.00 0.00 3.18
2661 3474 1.540363 GGCGTCTTCCTTGTCTTGTGA 60.540 52.381 0.00 0.00 0.00 3.58
2662 3475 0.868406 GGCGTCTTCCTTGTCTTGTG 59.132 55.000 0.00 0.00 0.00 3.33
2663 3476 0.759346 AGGCGTCTTCCTTGTCTTGT 59.241 50.000 0.00 0.00 30.82 3.16
2664 3477 1.801178 GAAGGCGTCTTCCTTGTCTTG 59.199 52.381 19.12 0.00 45.92 3.02
2665 3478 2.171341 GAAGGCGTCTTCCTTGTCTT 57.829 50.000 19.12 0.00 45.92 3.01
2666 3479 1.273886 GAGAAGGCGTCTTCCTTGTCT 59.726 52.381 25.48 6.23 46.90 3.41
2674 3487 2.048127 GCCACGAGAAGGCGTCTT 60.048 61.111 0.00 0.00 43.59 3.01
2680 3493 2.415608 TAGGAGCGCCACGAGAAGG 61.416 63.158 9.88 0.00 36.29 3.46
2681 3494 1.226717 GTAGGAGCGCCACGAGAAG 60.227 63.158 9.88 0.00 36.29 2.85
2682 3495 2.707849 GGTAGGAGCGCCACGAGAA 61.708 63.158 9.88 0.00 36.29 2.87
2683 3496 3.138798 GGTAGGAGCGCCACGAGA 61.139 66.667 9.88 0.00 36.29 4.04
2684 3497 3.127352 GAGGTAGGAGCGCCACGAG 62.127 68.421 9.88 0.00 36.29 4.18
2685 3498 3.138798 GAGGTAGGAGCGCCACGA 61.139 66.667 9.88 0.00 36.29 4.35
2686 3499 3.127352 GAGAGGTAGGAGCGCCACG 62.127 68.421 9.88 0.00 36.29 4.94
2687 3500 1.755008 AGAGAGGTAGGAGCGCCAC 60.755 63.158 9.88 4.87 36.29 5.01
2688 3501 1.754621 CAGAGAGGTAGGAGCGCCA 60.755 63.158 9.88 0.00 36.29 5.69
2689 3502 3.124686 CAGAGAGGTAGGAGCGCC 58.875 66.667 2.29 0.00 0.00 6.53
2690 3503 2.415426 GCAGAGAGGTAGGAGCGC 59.585 66.667 0.00 0.00 0.00 5.92
2691 3504 1.435515 GTGCAGAGAGGTAGGAGCG 59.564 63.158 0.00 0.00 0.00 5.03
2692 3505 1.316706 ACGTGCAGAGAGGTAGGAGC 61.317 60.000 0.00 0.00 0.00 4.70
2693 3506 1.178276 AACGTGCAGAGAGGTAGGAG 58.822 55.000 0.00 0.00 0.00 3.69
2694 3507 2.089980 GTAACGTGCAGAGAGGTAGGA 58.910 52.381 0.00 0.00 0.00 2.94
2695 3508 1.816835 TGTAACGTGCAGAGAGGTAGG 59.183 52.381 0.00 0.00 0.00 3.18
2696 3509 2.415625 GGTGTAACGTGCAGAGAGGTAG 60.416 54.545 0.00 0.00 38.12 3.18
2697 3510 1.542915 GGTGTAACGTGCAGAGAGGTA 59.457 52.381 0.00 0.00 38.12 3.08
2698 3511 0.317479 GGTGTAACGTGCAGAGAGGT 59.683 55.000 0.00 0.00 38.12 3.85
2699 3512 0.732880 CGGTGTAACGTGCAGAGAGG 60.733 60.000 0.00 0.00 38.12 3.69
2700 3513 0.039437 ACGGTGTAACGTGCAGAGAG 60.039 55.000 0.00 0.00 46.64 3.20
2701 3514 2.035421 ACGGTGTAACGTGCAGAGA 58.965 52.632 0.00 0.00 46.64 3.10
2702 3515 4.647654 ACGGTGTAACGTGCAGAG 57.352 55.556 0.00 0.00 46.64 3.35
2709 3522 8.810427 ACAAAATTATATAGACACGGTGTAACG 58.190 33.333 14.74 0.00 38.12 3.18
2713 3526 9.880157 AAGTACAAAATTATATAGACACGGTGT 57.120 29.630 14.66 14.66 0.00 4.16
3126 3959 2.552315 GCGGATGTTTTCTCTTTGTCCA 59.448 45.455 0.00 0.00 0.00 4.02
3159 3992 3.636313 GACCGCGTCCATCCAACGA 62.636 63.158 4.92 0.00 42.62 3.85
3188 4021 2.261671 GAGGCCACACACGTCGAT 59.738 61.111 5.01 0.00 0.00 3.59
3197 4030 2.203480 GTTGCAAGGGAGGCCACA 60.203 61.111 5.01 0.00 0.00 4.17
3201 4034 1.871126 GCTCTTGTTGCAAGGGAGGC 61.871 60.000 12.42 10.23 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.