Multiple sequence alignment - TraesCS5B01G195200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G195200 chr5B 100.000 3110 0 0 1 3110 352485402 352482293 0.000000e+00 5744
1 TraesCS5B01G195200 chr5A 93.956 3061 108 30 1 3014 390228898 390231928 0.000000e+00 4556
2 TraesCS5B01G195200 chr5D 96.769 2476 70 5 1 2467 307482101 307479627 0.000000e+00 4120
3 TraesCS5B01G195200 chr5D 87.370 578 33 14 2458 2997 307478209 307477634 7.320000e-176 627


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G195200 chr5B 352482293 352485402 3109 True 5744.0 5744 100.0000 1 3110 1 chr5B.!!$R1 3109
1 TraesCS5B01G195200 chr5A 390228898 390231928 3030 False 4556.0 4556 93.9560 1 3014 1 chr5A.!!$F1 3013
2 TraesCS5B01G195200 chr5D 307477634 307482101 4467 True 2373.5 4120 92.0695 1 2997 2 chr5D.!!$R1 2996

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
708 718 0.321996 GGTGGTGTGAGAGGTCCTTC 59.678 60.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2557 4015 0.598065 CGAAAAGGAGGCAACCAAGG 59.402 55.0 3.78 0.0 37.17 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 4.112634 AGGAAAAAGTGTCCCATGCTAA 57.887 40.909 0.00 0.00 35.59 3.09
116 117 2.048503 CGAAGGCCCGAAACGTCT 60.049 61.111 0.00 0.00 0.00 4.18
119 120 3.546714 AAGGCCCGAAACGTCTGGG 62.547 63.158 13.79 13.79 39.33 4.45
361 365 0.391597 AAAGCAACCGACGAAGAGGA 59.608 50.000 0.00 0.00 33.69 3.71
565 572 5.128499 TGGTTTGATTGACTGATTGGTTGTT 59.872 36.000 0.00 0.00 0.00 2.83
708 718 0.321996 GGTGGTGTGAGAGGTCCTTC 59.678 60.000 0.00 0.00 0.00 3.46
709 719 0.321996 GTGGTGTGAGAGGTCCTTCC 59.678 60.000 0.00 0.00 0.00 3.46
827 849 0.534203 GAAGTTGAACCCTGCGTGGA 60.534 55.000 0.00 0.00 38.35 4.02
871 896 7.335422 GGATCATGGAGGTATGTAAAGCTAATG 59.665 40.741 0.00 0.00 0.00 1.90
902 927 4.321745 CAGATTGCTGTAATTGTTGCGTTC 59.678 41.667 0.00 0.00 37.37 3.95
957 982 0.975556 TAGCAACCAGGGCAGATCGA 60.976 55.000 0.00 0.00 0.00 3.59
966 991 1.211457 AGGGCAGATCGATTTTGCTCT 59.789 47.619 24.45 24.45 43.53 4.09
1047 1075 1.889170 GGAGGGAAGAAAGCAAAGGTG 59.111 52.381 0.00 0.00 0.00 4.00
1064 1092 2.190578 GGTGGAGGGGAATGCTCG 59.809 66.667 0.00 0.00 0.00 5.03
1103 1131 0.679505 CTCACCGAGGTCTTCCACAA 59.320 55.000 0.00 0.00 35.89 3.33
1180 1208 2.945278 TGCTTTCCGATGTGCATTTTC 58.055 42.857 0.00 0.00 0.00 2.29
1518 1546 3.419292 GCAACACAAAATTGCGCAC 57.581 47.368 11.12 0.00 42.75 5.34
1604 1632 3.008485 AGAGACTGGAGACAAATTGGGAC 59.992 47.826 0.00 0.00 42.06 4.46
1803 1831 5.416271 AGCTCGAGGGAAAACTATGTTTA 57.584 39.130 15.58 0.00 0.00 2.01
2107 2135 5.401531 TGAAAGTATAGTTCCTCTGCGTT 57.598 39.130 0.00 0.00 0.00 4.84
2257 2287 8.732746 TTAATTTGGCCTACTTTATCACTCTC 57.267 34.615 3.32 0.00 0.00 3.20
2258 2288 6.567602 ATTTGGCCTACTTTATCACTCTCT 57.432 37.500 3.32 0.00 0.00 3.10
2472 3930 0.253044 TGTGAACCTGGATGGCTAGC 59.747 55.000 6.04 6.04 40.22 3.42
2484 3942 1.303643 GGCTAGCCTGGCTTTGTGT 60.304 57.895 28.55 3.42 40.44 3.72
2511 3969 8.607459 CATGTAAAATCAGACTAATCGCTTTCT 58.393 33.333 0.00 0.00 0.00 2.52
2520 3978 4.813027 ACTAATCGCTTTCTGTTACGGAA 58.187 39.130 2.02 2.02 0.00 4.30
2557 4015 3.104843 TGGCTTTGTGGCATGTAAAAC 57.895 42.857 0.00 0.00 46.76 2.43
2575 4033 1.704641 ACCTTGGTTGCCTCCTTTTC 58.295 50.000 0.00 0.00 0.00 2.29
2627 4089 4.275936 AGTCTGGTTTTCTGAAATTGACGG 59.724 41.667 3.31 0.99 32.06 4.79
2687 4149 4.957759 TGATGCAGATTGTTCACATGAG 57.042 40.909 0.00 0.00 0.00 2.90
2698 4160 6.466308 TTGTTCACATGAGACTATCGTTTG 57.534 37.500 0.00 0.00 0.00 2.93
2755 4217 2.432146 CAAGCTGGCCATAGAGAGTACA 59.568 50.000 5.51 0.00 0.00 2.90
2820 4303 7.663081 ACGCTAGGAAATCATGTTGATGATAAT 59.337 33.333 0.00 0.00 46.79 1.28
2821 4304 7.961283 CGCTAGGAAATCATGTTGATGATAATG 59.039 37.037 0.00 0.00 46.79 1.90
2866 4349 3.963665 TGCATCAAGAAAAGAAACCACG 58.036 40.909 0.00 0.00 0.00 4.94
2889 4372 2.848887 CGTTCAGTCTTACATCAGCTCG 59.151 50.000 0.00 0.00 0.00 5.03
2960 4455 3.364664 CCATGCATTACATAGCTGAAGCG 60.365 47.826 0.00 0.00 41.16 4.68
2998 4493 1.796151 CCGTGTGATGTGCATCCAC 59.204 57.895 16.59 16.59 42.40 4.02
3014 4509 1.988107 TCCACCTGAGGCATTTCTTCT 59.012 47.619 0.00 0.00 0.00 2.85
3015 4510 2.376518 TCCACCTGAGGCATTTCTTCTT 59.623 45.455 0.00 0.00 0.00 2.52
3016 4511 2.751806 CCACCTGAGGCATTTCTTCTTC 59.248 50.000 0.00 0.00 0.00 2.87
3017 4512 3.415212 CACCTGAGGCATTTCTTCTTCA 58.585 45.455 0.00 0.00 0.00 3.02
3018 4513 4.015084 CACCTGAGGCATTTCTTCTTCAT 58.985 43.478 0.00 0.00 0.00 2.57
3019 4514 4.096081 CACCTGAGGCATTTCTTCTTCATC 59.904 45.833 0.00 0.00 0.00 2.92
3020 4515 4.263639 ACCTGAGGCATTTCTTCTTCATCA 60.264 41.667 0.00 0.00 0.00 3.07
3021 4516 4.335874 CCTGAGGCATTTCTTCTTCATCAG 59.664 45.833 0.00 0.00 33.19 2.90
3022 4517 3.693085 TGAGGCATTTCTTCTTCATCAGC 59.307 43.478 0.00 0.00 0.00 4.26
3023 4518 3.022406 AGGCATTTCTTCTTCATCAGCC 58.978 45.455 0.00 0.00 39.82 4.85
3024 4519 3.022406 GGCATTTCTTCTTCATCAGCCT 58.978 45.455 0.00 0.00 36.72 4.58
3025 4520 3.181489 GGCATTTCTTCTTCATCAGCCTG 60.181 47.826 0.00 0.00 36.72 4.85
3026 4521 3.181489 GCATTTCTTCTTCATCAGCCTGG 60.181 47.826 0.00 0.00 0.00 4.45
3027 4522 3.795688 TTTCTTCTTCATCAGCCTGGT 57.204 42.857 0.00 0.00 0.00 4.00
3028 4523 2.775911 TCTTCTTCATCAGCCTGGTG 57.224 50.000 0.00 0.00 0.00 4.17
3029 4524 1.093159 CTTCTTCATCAGCCTGGTGC 58.907 55.000 0.00 0.00 41.71 5.01
3030 4525 0.401356 TTCTTCATCAGCCTGGTGCA 59.599 50.000 0.00 0.00 44.83 4.57
3031 4526 0.035725 TCTTCATCAGCCTGGTGCAG 60.036 55.000 0.00 0.00 44.83 4.41
3032 4527 0.035725 CTTCATCAGCCTGGTGCAGA 60.036 55.000 0.00 0.00 44.83 4.26
3033 4528 0.401356 TTCATCAGCCTGGTGCAGAA 59.599 50.000 0.00 0.00 44.83 3.02
3034 4529 0.321919 TCATCAGCCTGGTGCAGAAC 60.322 55.000 0.00 0.00 44.83 3.01
3035 4530 1.376424 ATCAGCCTGGTGCAGAACG 60.376 57.895 0.00 0.00 44.83 3.95
3036 4531 1.830587 ATCAGCCTGGTGCAGAACGA 61.831 55.000 0.00 0.00 44.83 3.85
3037 4532 1.376424 CAGCCTGGTGCAGAACGAT 60.376 57.895 0.00 0.00 44.83 3.73
3038 4533 0.957395 CAGCCTGGTGCAGAACGATT 60.957 55.000 0.00 0.00 44.83 3.34
3039 4534 0.957395 AGCCTGGTGCAGAACGATTG 60.957 55.000 0.00 0.00 44.83 2.67
3040 4535 1.503542 CCTGGTGCAGAACGATTGC 59.496 57.895 0.00 0.00 41.86 3.56
3041 4536 1.503542 CTGGTGCAGAACGATTGCC 59.496 57.895 0.00 0.00 40.81 4.52
3042 4537 2.244436 CTGGTGCAGAACGATTGCCG 62.244 60.000 0.00 0.00 40.81 5.69
3043 4538 2.032634 GGTGCAGAACGATTGCCGA 61.033 57.895 0.00 0.00 40.81 5.54
3044 4539 1.573829 GGTGCAGAACGATTGCCGAA 61.574 55.000 0.00 0.00 40.81 4.30
3045 4540 0.452784 GTGCAGAACGATTGCCGAAC 60.453 55.000 0.00 0.00 40.81 3.95
3046 4541 1.225745 GCAGAACGATTGCCGAACG 60.226 57.895 0.00 0.00 41.76 3.95
3047 4542 1.897398 GCAGAACGATTGCCGAACGT 61.897 55.000 0.00 0.00 41.76 3.99
3048 4543 0.093026 CAGAACGATTGCCGAACGTC 59.907 55.000 0.00 0.00 41.76 4.34
3049 4544 0.319211 AGAACGATTGCCGAACGTCA 60.319 50.000 0.00 0.00 41.76 4.35
3050 4545 0.093026 GAACGATTGCCGAACGTCAG 59.907 55.000 0.00 0.00 41.76 3.51
3051 4546 1.289109 AACGATTGCCGAACGTCAGG 61.289 55.000 5.02 5.02 41.76 3.86
3057 4552 3.706140 CCGAACGTCAGGCATAGC 58.294 61.111 0.00 0.00 0.00 2.97
3058 4553 1.153647 CCGAACGTCAGGCATAGCA 60.154 57.895 0.00 0.00 0.00 3.49
3059 4554 1.148157 CCGAACGTCAGGCATAGCAG 61.148 60.000 0.00 0.00 0.00 4.24
3060 4555 1.148157 CGAACGTCAGGCATAGCAGG 61.148 60.000 0.00 0.00 0.00 4.85
3061 4556 0.108138 GAACGTCAGGCATAGCAGGT 60.108 55.000 0.00 0.00 0.00 4.00
3062 4557 0.324943 AACGTCAGGCATAGCAGGTT 59.675 50.000 0.00 0.00 0.00 3.50
3063 4558 0.324943 ACGTCAGGCATAGCAGGTTT 59.675 50.000 0.00 0.00 0.00 3.27
3064 4559 1.009829 CGTCAGGCATAGCAGGTTTC 58.990 55.000 0.00 0.00 0.00 2.78
3065 4560 1.406069 CGTCAGGCATAGCAGGTTTCT 60.406 52.381 0.00 0.00 0.00 2.52
3066 4561 2.716217 GTCAGGCATAGCAGGTTTCTT 58.284 47.619 0.00 0.00 0.00 2.52
3067 4562 2.680339 GTCAGGCATAGCAGGTTTCTTC 59.320 50.000 0.00 0.00 0.00 2.87
3068 4563 2.573462 TCAGGCATAGCAGGTTTCTTCT 59.427 45.455 0.00 0.00 0.00 2.85
3069 4564 2.681848 CAGGCATAGCAGGTTTCTTCTG 59.318 50.000 0.00 0.00 35.49 3.02
3070 4565 2.307098 AGGCATAGCAGGTTTCTTCTGT 59.693 45.455 0.00 0.00 34.89 3.41
3071 4566 2.680339 GGCATAGCAGGTTTCTTCTGTC 59.320 50.000 0.00 0.00 34.89 3.51
3072 4567 2.349886 GCATAGCAGGTTTCTTCTGTCG 59.650 50.000 0.00 0.00 34.89 4.35
3073 4568 3.849911 CATAGCAGGTTTCTTCTGTCGA 58.150 45.455 0.00 0.00 34.89 4.20
3074 4569 2.447244 AGCAGGTTTCTTCTGTCGAG 57.553 50.000 0.00 0.00 34.89 4.04
3075 4570 1.964223 AGCAGGTTTCTTCTGTCGAGA 59.036 47.619 0.00 0.00 34.89 4.04
3076 4571 2.029470 AGCAGGTTTCTTCTGTCGAGAG 60.029 50.000 2.50 2.50 34.89 3.20
3077 4572 2.333014 CAGGTTTCTTCTGTCGAGAGC 58.667 52.381 4.35 0.00 0.00 4.09
3078 4573 1.068194 AGGTTTCTTCTGTCGAGAGCG 60.068 52.381 4.35 0.00 39.35 5.03
3079 4574 1.068472 GGTTTCTTCTGTCGAGAGCGA 60.068 52.381 4.35 1.04 45.71 4.93
3087 4582 4.794164 TCGAGAGCGATTGACTGC 57.206 55.556 0.00 0.00 42.51 4.40
3088 4583 1.226407 TCGAGAGCGATTGACTGCG 60.226 57.895 0.00 0.00 42.51 5.18
3089 4584 2.226896 CGAGAGCGATTGACTGCGG 61.227 63.158 0.00 0.00 40.82 5.69
3090 4585 2.510238 AGAGCGATTGACTGCGGC 60.510 61.111 0.00 0.00 35.87 6.53
3091 4586 2.510238 GAGCGATTGACTGCGGCT 60.510 61.111 0.00 0.00 36.51 5.52
3092 4587 2.510238 AGCGATTGACTGCGGCTC 60.510 61.111 0.00 0.00 35.87 4.70
3093 4588 3.567797 GCGATTGACTGCGGCTCC 61.568 66.667 0.00 0.00 0.00 4.70
3094 4589 2.125552 CGATTGACTGCGGCTCCA 60.126 61.111 0.00 0.00 0.00 3.86
3095 4590 1.741401 CGATTGACTGCGGCTCCAA 60.741 57.895 0.00 3.25 0.00 3.53
3096 4591 1.091771 CGATTGACTGCGGCTCCAAT 61.092 55.000 12.31 12.31 32.54 3.16
3097 4592 1.098050 GATTGACTGCGGCTCCAATT 58.902 50.000 0.00 0.00 30.29 2.32
3098 4593 2.288666 GATTGACTGCGGCTCCAATTA 58.711 47.619 0.00 0.00 30.29 1.40
3099 4594 1.448985 TTGACTGCGGCTCCAATTAC 58.551 50.000 0.00 0.00 0.00 1.89
3100 4595 0.392461 TGACTGCGGCTCCAATTACC 60.392 55.000 0.00 0.00 0.00 2.85
3101 4596 0.392461 GACTGCGGCTCCAATTACCA 60.392 55.000 0.00 0.00 0.00 3.25
3102 4597 0.255890 ACTGCGGCTCCAATTACCAT 59.744 50.000 0.00 0.00 0.00 3.55
3103 4598 1.340991 ACTGCGGCTCCAATTACCATT 60.341 47.619 0.00 0.00 0.00 3.16
3104 4599 1.750778 CTGCGGCTCCAATTACCATTT 59.249 47.619 0.00 0.00 0.00 2.32
3105 4600 1.748493 TGCGGCTCCAATTACCATTTC 59.252 47.619 0.00 0.00 0.00 2.17
3106 4601 1.067060 GCGGCTCCAATTACCATTTCC 59.933 52.381 0.00 0.00 0.00 3.13
3107 4602 2.654863 CGGCTCCAATTACCATTTCCT 58.345 47.619 0.00 0.00 0.00 3.36
3108 4603 2.618709 CGGCTCCAATTACCATTTCCTC 59.381 50.000 0.00 0.00 0.00 3.71
3109 4604 2.618709 GGCTCCAATTACCATTTCCTCG 59.381 50.000 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 4.016706 CCCAGACGTTTCGGGCCT 62.017 66.667 0.84 0.00 35.83 5.19
150 151 4.373116 GTTGAGGCGCGGAGTGGA 62.373 66.667 8.83 0.00 39.19 4.02
543 550 7.401080 CAAAACAACCAATCAGTCAATCAAAC 58.599 34.615 0.00 0.00 0.00 2.93
565 572 2.054473 AACCTACCGGCCGAACCAAA 62.054 55.000 30.73 3.68 39.03 3.28
708 718 1.664321 GCTGCATTGAGGCTTCCAGG 61.664 60.000 0.00 0.00 34.04 4.45
709 719 1.664321 GGCTGCATTGAGGCTTCCAG 61.664 60.000 0.50 0.00 35.65 3.86
710 720 1.679977 GGCTGCATTGAGGCTTCCA 60.680 57.895 0.50 0.00 35.65 3.53
711 721 1.379576 AGGCTGCATTGAGGCTTCC 60.380 57.895 0.50 0.00 46.26 3.46
712 722 4.333417 AGGCTGCATTGAGGCTTC 57.667 55.556 0.50 0.00 46.26 3.86
715 725 3.207669 CGGAGGCTGCATTGAGGC 61.208 66.667 6.86 0.00 38.81 4.70
762 780 0.179100 CCCAATCTCAGCACGACGAT 60.179 55.000 0.00 0.00 0.00 3.73
902 927 8.592105 AAACAATCACAAATATCAACACAAGG 57.408 30.769 0.00 0.00 0.00 3.61
938 963 0.975556 TCGATCTGCCCTGGTTGCTA 60.976 55.000 0.00 0.00 0.00 3.49
957 982 4.500499 ACTGATCAGGCTAGAGCAAAAT 57.500 40.909 26.08 0.00 44.36 1.82
966 991 6.073981 AGATCAATCACTACTGATCAGGCTA 58.926 40.000 26.08 9.96 46.92 3.93
1047 1075 2.190578 CGAGCATTCCCCTCCACC 59.809 66.667 0.00 0.00 0.00 4.61
1148 1176 2.086869 CGGAAAGCAATGACATCCAGT 58.913 47.619 0.00 0.00 0.00 4.00
1180 1208 1.284982 CGGTTCAGGTGCTCGTGAAG 61.285 60.000 20.59 9.32 45.07 3.02
1518 1546 1.876156 GCATGAGCTCCCGGATAAAAG 59.124 52.381 12.15 0.00 37.91 2.27
1604 1632 2.484287 AATTGGTGCCCCACGGAGAG 62.484 60.000 0.00 0.00 41.67 3.20
1767 1795 1.063806 CGAGCTCGGACAAAGAACAG 58.936 55.000 28.40 0.00 35.37 3.16
1803 1831 1.094785 GCGCACCATCCACAACTAAT 58.905 50.000 0.30 0.00 0.00 1.73
2133 2161 8.868522 TCAAGAATAAAGAAGACCAACATCAT 57.131 30.769 0.00 0.00 0.00 2.45
2415 2445 2.158475 TCAACCAAGCTGTTCCCTGAAT 60.158 45.455 0.00 0.00 0.00 2.57
2416 2446 1.214175 TCAACCAAGCTGTTCCCTGAA 59.786 47.619 0.00 0.00 0.00 3.02
2472 3930 4.582701 TTTTACATGACACAAAGCCAGG 57.417 40.909 0.00 0.00 0.00 4.45
2484 3942 8.492673 AAAGCGATTAGTCTGATTTTACATGA 57.507 30.769 0.00 0.00 0.00 3.07
2504 3962 1.136336 GCAGTTCCGTAACAGAAAGCG 60.136 52.381 0.00 0.00 38.12 4.68
2511 3969 2.299013 AGTCATGAGCAGTTCCGTAACA 59.701 45.455 0.00 0.00 38.12 2.41
2520 3978 1.480137 GCCAGACTAGTCATGAGCAGT 59.520 52.381 24.44 8.53 0.00 4.40
2557 4015 0.598065 CGAAAAGGAGGCAACCAAGG 59.402 55.000 3.78 0.00 37.17 3.61
2575 4033 1.802960 CAGCTAGGCCTTTATCATGCG 59.197 52.381 12.58 0.00 0.00 4.73
2698 4160 8.023128 ACTGCATTTACAACATTATGAAGACAC 58.977 33.333 0.00 0.00 29.87 3.67
2755 4217 0.534877 TCTCGCACAACATGGCAACT 60.535 50.000 0.00 0.00 37.61 3.16
2834 4317 2.527497 TCTTGATGCAAAATGGAGCCA 58.473 42.857 0.00 0.00 0.00 4.75
2866 4349 1.661112 GCTGATGTAAGACTGAACGCC 59.339 52.381 0.00 0.00 0.00 5.68
2889 4372 4.712122 TCTCTTGTTTTGTGTTTGACCC 57.288 40.909 0.00 0.00 0.00 4.46
2924 4407 1.338960 TGCATGGCTCAAGTCGAATCA 60.339 47.619 0.00 0.00 0.00 2.57
2960 4455 0.455815 CCTGGCCTTAAAATGTCGCC 59.544 55.000 3.32 0.00 40.16 5.54
2982 4477 0.806868 CAGGTGGATGCACATCACAC 59.193 55.000 19.67 15.23 39.54 3.82
2998 4493 4.267536 TGATGAAGAAGAAATGCCTCAGG 58.732 43.478 0.00 0.00 0.00 3.86
3014 4509 2.068915 TCTGCACCAGGCTGATGAA 58.931 52.632 14.58 0.00 44.37 2.57
3015 4510 3.810255 TCTGCACCAGGCTGATGA 58.190 55.556 14.58 2.03 44.37 2.92
3019 4514 0.957395 AATCGTTCTGCACCAGGCTG 60.957 55.000 7.75 7.75 45.15 4.85
3020 4515 0.957395 CAATCGTTCTGCACCAGGCT 60.957 55.000 0.00 0.00 45.15 4.58
3021 4516 1.503542 CAATCGTTCTGCACCAGGC 59.496 57.895 0.00 0.00 45.13 4.85
3022 4517 1.503542 GCAATCGTTCTGCACCAGG 59.496 57.895 0.00 0.00 39.69 4.45
3023 4518 1.503542 GGCAATCGTTCTGCACCAG 59.496 57.895 8.07 0.00 41.78 4.00
3024 4519 2.324330 CGGCAATCGTTCTGCACCA 61.324 57.895 8.07 0.00 41.78 4.17
3025 4520 1.573829 TTCGGCAATCGTTCTGCACC 61.574 55.000 8.07 0.00 41.78 5.01
3026 4521 0.452784 GTTCGGCAATCGTTCTGCAC 60.453 55.000 8.07 0.00 41.78 4.57
3027 4522 1.866237 GTTCGGCAATCGTTCTGCA 59.134 52.632 8.07 0.00 41.78 4.41
3028 4523 1.225745 CGTTCGGCAATCGTTCTGC 60.226 57.895 0.00 0.00 40.32 4.26
3029 4524 0.093026 GACGTTCGGCAATCGTTCTG 59.907 55.000 0.00 0.00 40.32 3.02
3030 4525 0.319211 TGACGTTCGGCAATCGTTCT 60.319 50.000 0.00 0.00 40.32 3.01
3031 4526 0.093026 CTGACGTTCGGCAATCGTTC 59.907 55.000 1.67 0.00 40.32 3.95
3032 4527 1.289109 CCTGACGTTCGGCAATCGTT 61.289 55.000 1.67 0.00 40.32 3.85
3033 4528 1.736645 CCTGACGTTCGGCAATCGT 60.737 57.895 1.67 0.00 40.32 3.73
3034 4529 3.081133 CCTGACGTTCGGCAATCG 58.919 61.111 1.67 0.00 40.90 3.34
3035 4530 2.785258 GCCTGACGTTCGGCAATC 59.215 61.111 20.18 0.00 45.59 2.67
3039 4534 2.526120 GCTATGCCTGACGTTCGGC 61.526 63.158 18.80 18.80 46.46 5.54
3040 4535 1.148157 CTGCTATGCCTGACGTTCGG 61.148 60.000 0.00 0.00 0.00 4.30
3041 4536 1.148157 CCTGCTATGCCTGACGTTCG 61.148 60.000 0.00 0.00 0.00 3.95
3042 4537 0.108138 ACCTGCTATGCCTGACGTTC 60.108 55.000 0.00 0.00 0.00 3.95
3043 4538 0.324943 AACCTGCTATGCCTGACGTT 59.675 50.000 0.00 0.00 0.00 3.99
3044 4539 0.324943 AAACCTGCTATGCCTGACGT 59.675 50.000 0.00 0.00 0.00 4.34
3045 4540 1.009829 GAAACCTGCTATGCCTGACG 58.990 55.000 0.00 0.00 0.00 4.35
3046 4541 2.409948 AGAAACCTGCTATGCCTGAC 57.590 50.000 0.00 0.00 0.00 3.51
3047 4542 2.573462 AGAAGAAACCTGCTATGCCTGA 59.427 45.455 0.00 0.00 0.00 3.86
3048 4543 2.681848 CAGAAGAAACCTGCTATGCCTG 59.318 50.000 0.00 0.00 0.00 4.85
3049 4544 2.307098 ACAGAAGAAACCTGCTATGCCT 59.693 45.455 0.00 0.00 35.14 4.75
3050 4545 2.680339 GACAGAAGAAACCTGCTATGCC 59.320 50.000 0.00 0.00 35.14 4.40
3051 4546 2.349886 CGACAGAAGAAACCTGCTATGC 59.650 50.000 0.00 0.00 35.14 3.14
3052 4547 3.849911 TCGACAGAAGAAACCTGCTATG 58.150 45.455 0.00 0.00 35.14 2.23
3053 4548 3.764434 TCTCGACAGAAGAAACCTGCTAT 59.236 43.478 0.00 0.00 35.14 2.97
3054 4549 3.154710 TCTCGACAGAAGAAACCTGCTA 58.845 45.455 0.00 0.00 35.14 3.49
3055 4550 1.964223 TCTCGACAGAAGAAACCTGCT 59.036 47.619 0.00 0.00 35.14 4.24
3056 4551 2.333014 CTCTCGACAGAAGAAACCTGC 58.667 52.381 0.00 0.00 35.14 4.85
3057 4552 2.333014 GCTCTCGACAGAAGAAACCTG 58.667 52.381 0.00 0.00 37.64 4.00
3058 4553 1.068194 CGCTCTCGACAGAAGAAACCT 60.068 52.381 0.00 0.00 38.10 3.50
3059 4554 1.068472 TCGCTCTCGACAGAAGAAACC 60.068 52.381 0.00 0.00 40.21 3.27
3060 4555 2.333389 TCGCTCTCGACAGAAGAAAC 57.667 50.000 0.00 0.00 40.21 2.78
3071 4566 2.226896 CCGCAGTCAATCGCTCTCG 61.227 63.158 0.00 0.00 0.00 4.04
3072 4567 2.520904 GCCGCAGTCAATCGCTCTC 61.521 63.158 0.00 0.00 0.00 3.20
3073 4568 2.510238 GCCGCAGTCAATCGCTCT 60.510 61.111 0.00 0.00 0.00 4.09
3074 4569 2.510238 AGCCGCAGTCAATCGCTC 60.510 61.111 0.00 0.00 0.00 5.03
3075 4570 2.510238 GAGCCGCAGTCAATCGCT 60.510 61.111 0.00 0.00 0.00 4.93
3076 4571 3.567797 GGAGCCGCAGTCAATCGC 61.568 66.667 0.00 0.00 0.00 4.58
3077 4572 1.091771 ATTGGAGCCGCAGTCAATCG 61.092 55.000 0.00 0.00 0.00 3.34
3078 4573 1.098050 AATTGGAGCCGCAGTCAATC 58.902 50.000 0.00 0.00 0.00 2.67
3079 4574 2.017049 GTAATTGGAGCCGCAGTCAAT 58.983 47.619 0.00 0.00 0.00 2.57
3080 4575 1.448985 GTAATTGGAGCCGCAGTCAA 58.551 50.000 0.00 0.00 0.00 3.18
3081 4576 0.392461 GGTAATTGGAGCCGCAGTCA 60.392 55.000 0.00 0.00 0.00 3.41
3082 4577 0.392461 TGGTAATTGGAGCCGCAGTC 60.392 55.000 0.00 0.00 0.00 3.51
3083 4578 0.255890 ATGGTAATTGGAGCCGCAGT 59.744 50.000 0.00 0.00 0.00 4.40
3084 4579 1.392589 AATGGTAATTGGAGCCGCAG 58.607 50.000 0.00 0.00 0.00 5.18
3085 4580 1.748493 GAAATGGTAATTGGAGCCGCA 59.252 47.619 0.00 0.00 0.00 5.69
3086 4581 1.067060 GGAAATGGTAATTGGAGCCGC 59.933 52.381 0.00 0.00 0.00 6.53
3087 4582 2.618709 GAGGAAATGGTAATTGGAGCCG 59.381 50.000 0.00 0.00 0.00 5.52
3088 4583 2.618709 CGAGGAAATGGTAATTGGAGCC 59.381 50.000 0.00 0.00 0.00 4.70
3089 4584 3.971032 CGAGGAAATGGTAATTGGAGC 57.029 47.619 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.