Multiple sequence alignment - TraesCS5B01G194900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G194900 chr5B 100.000 6555 0 0 1 6555 352132221 352138775 0.000000e+00 12105.0
1 TraesCS5B01G194900 chr5B 100.000 1313 0 0 6907 8219 352139127 352140439 0.000000e+00 2425.0
2 TraesCS5B01G194900 chr5B 85.000 120 16 2 492 611 645091963 645091846 4.030000e-23 121.0
3 TraesCS5B01G194900 chr5B 95.890 73 3 0 8147 8219 79812071 79812143 1.450000e-22 119.0
4 TraesCS5B01G194900 chr5B 94.595 74 4 0 8146 8219 655490248 655490175 1.870000e-21 115.0
5 TraesCS5B01G194900 chr5B 93.878 49 3 0 5902 5950 36485420 36485468 3.180000e-09 75.0
6 TraesCS5B01G194900 chr5B 93.878 49 3 0 5902 5950 36489082 36489130 3.180000e-09 75.0
7 TraesCS5B01G194900 chr5B 93.878 49 3 0 5902 5950 36490916 36490964 3.180000e-09 75.0
8 TraesCS5B01G194900 chr5A 95.672 3743 97 28 646 4376 390563719 390560030 0.000000e+00 5954.0
9 TraesCS5B01G194900 chr5A 94.870 1540 52 10 4378 5910 390555421 390553902 0.000000e+00 2381.0
10 TraesCS5B01G194900 chr5A 88.070 746 50 9 7030 7761 390553353 390552633 0.000000e+00 848.0
11 TraesCS5B01G194900 chr5A 94.555 551 18 4 6014 6555 390553904 390553357 0.000000e+00 841.0
12 TraesCS5B01G194900 chr5A 84.937 239 6 10 7929 8146 390552347 390552118 1.800000e-51 215.0
13 TraesCS5B01G194900 chr5A 90.000 160 16 0 7763 7922 390552573 390552414 3.010000e-49 207.0
14 TraesCS5B01G194900 chr5A 90.299 134 13 0 521 654 390564986 390564853 8.480000e-40 176.0
15 TraesCS5B01G194900 chr5A 93.443 122 2 1 6907 7028 437917846 437917961 8.480000e-40 176.0
16 TraesCS5B01G194900 chr5A 83.871 124 18 2 492 615 606354539 606354418 5.210000e-22 117.0
17 TraesCS5B01G194900 chr5D 95.410 3377 124 17 1944 5309 306781440 306784796 0.000000e+00 5349.0
18 TraesCS5B01G194900 chr5D 95.988 1022 23 5 777 1794 306780434 306781441 0.000000e+00 1644.0
19 TraesCS5B01G194900 chr5D 87.033 910 68 13 7035 7923 306786144 306787024 0.000000e+00 981.0
20 TraesCS5B01G194900 chr5D 89.340 788 28 17 2 785 306778593 306779328 0.000000e+00 939.0
21 TraesCS5B01G194900 chr5D 95.214 585 21 1 5326 5910 306784909 306785486 0.000000e+00 918.0
22 TraesCS5B01G194900 chr5D 90.710 549 22 12 6014 6555 306785484 306786010 0.000000e+00 704.0
23 TraesCS5B01G194900 chr5D 85.903 227 5 7 7939 8146 306789266 306789484 5.000000e-52 217.0
24 TraesCS5B01G194900 chr1A 87.603 363 37 6 7309 7667 474172817 474173175 1.650000e-111 414.0
25 TraesCS5B01G194900 chr1A 85.965 285 32 6 7387 7667 261373669 261373389 1.730000e-76 298.0
26 TraesCS5B01G194900 chr1A 91.803 122 4 1 6907 7028 13965254 13965139 1.840000e-36 165.0
27 TraesCS5B01G194900 chr1A 83.077 130 20 2 486 615 410159282 410159155 5.210000e-22 117.0
28 TraesCS5B01G194900 chr1A 84.167 120 18 1 492 611 500974742 500974860 1.870000e-21 115.0
29 TraesCS5B01G194900 chr6B 95.951 247 10 0 3565 3811 172704577 172704331 1.280000e-107 401.0
30 TraesCS5B01G194900 chr6B 95.082 122 2 1 6907 7028 702508227 702508344 1.090000e-43 189.0
31 TraesCS5B01G194900 chr6B 91.803 122 2 4 6907 7028 169099910 169100023 6.600000e-36 163.0
32 TraesCS5B01G194900 chr6B 85.841 113 12 1 5908 6016 692970038 692969926 5.210000e-22 117.0
33 TraesCS5B01G194900 chr6B 90.361 83 6 2 5951 6032 35813705 35813786 3.140000e-19 108.0
34 TraesCS5B01G194900 chr4A 85.614 285 33 6 7387 7667 605126723 605127003 8.070000e-75 292.0
35 TraesCS5B01G194900 chr4A 94.262 122 1 1 6907 7028 13770984 13771099 1.820000e-41 182.0
36 TraesCS5B01G194900 chr3A 96.721 122 1 1 6907 7028 552484232 552484350 5.030000e-47 200.0
37 TraesCS5B01G194900 chr4B 96.667 120 1 1 6909 7028 414256311 414256195 6.510000e-46 196.0
38 TraesCS5B01G194900 chr4B 95.775 71 3 0 8143 8213 633934439 633934509 1.870000e-21 115.0
39 TraesCS5B01G194900 chr4B 94.521 73 4 0 8141 8213 519489246 519489318 6.740000e-21 113.0
40 TraesCS5B01G194900 chr4B 100.000 28 0 0 640 667 510177445 510177472 1.500000e-02 52.8
41 TraesCS5B01G194900 chr6A 92.623 122 0 2 6907 7028 115407612 115407500 5.100000e-37 167.0
42 TraesCS5B01G194900 chr2A 93.750 112 1 1 6917 7028 31756979 31756874 6.600000e-36 163.0
43 TraesCS5B01G194900 chr1B 93.000 100 7 0 3565 3664 303859382 303859481 6.650000e-31 147.0
44 TraesCS5B01G194900 chr1B 88.793 116 11 2 5908 6021 131502771 131502656 3.090000e-29 141.0
45 TraesCS5B01G194900 chr1B 89.189 111 9 1 5909 6016 536661095 536661205 1.440000e-27 135.0
46 TraesCS5B01G194900 chr1D 89.286 112 11 1 5907 6017 445785580 445785469 1.110000e-28 139.0
47 TraesCS5B01G194900 chr3B 87.705 122 7 2 6908 7028 376610618 376610732 1.440000e-27 135.0
48 TraesCS5B01G194900 chr3B 87.500 112 9 3 5909 6016 5751151 5751261 3.110000e-24 124.0
49 TraesCS5B01G194900 chr3B 93.333 75 5 0 8145 8219 477626919 477626845 2.420000e-20 111.0
50 TraesCS5B01G194900 chr7D 94.937 79 4 0 5947 6025 619400765 619400843 3.110000e-24 124.0
51 TraesCS5B01G194900 chr7D 84.553 123 17 2 490 612 477388105 477387985 4.030000e-23 121.0
52 TraesCS5B01G194900 chr7D 91.379 58 4 1 5896 5952 15497645 15497702 2.460000e-10 78.7
53 TraesCS5B01G194900 chr2D 85.714 119 16 1 492 610 247820400 247820517 3.110000e-24 124.0
54 TraesCS5B01G194900 chr2D 91.860 86 6 1 5947 6031 445733740 445733655 1.450000e-22 119.0
55 TraesCS5B01G194900 chr7B 85.000 120 17 1 491 610 60042678 60042560 4.030000e-23 121.0
56 TraesCS5B01G194900 chr7B 95.890 73 3 0 8147 8219 25669183 25669255 1.450000e-22 119.0
57 TraesCS5B01G194900 chr7A 95.890 73 3 0 8147 8219 666676654 666676582 1.450000e-22 119.0
58 TraesCS5B01G194900 chr2B 98.507 67 1 0 8147 8213 103398057 103398123 1.450000e-22 119.0
59 TraesCS5B01G194900 chr2B 95.890 73 3 0 8147 8219 508216122 508216050 1.450000e-22 119.0
60 TraesCS5B01G194900 chr6D 84.298 121 18 1 492 612 428264898 428265017 5.210000e-22 117.0
61 TraesCS5B01G194900 chr6D 82.759 116 13 5 5908 6016 462028482 462028367 6.790000e-16 97.1
62 TraesCS5B01G194900 chr3D 84.034 119 16 3 5905 6021 29307682 29307565 2.420000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G194900 chr5B 352132221 352140439 8218 False 7265.0 12105 100.000000 1 8219 2 chr5B.!!$F3 8218
1 TraesCS5B01G194900 chr5A 390560030 390564986 4956 True 3065.0 5954 92.985500 521 4376 2 chr5A.!!$R3 3855
2 TraesCS5B01G194900 chr5A 390552118 390555421 3303 True 898.4 2381 90.486400 4378 8146 5 chr5A.!!$R2 3768
3 TraesCS5B01G194900 chr5D 306778593 306789484 10891 False 1536.0 5349 91.371143 2 8146 7 chr5D.!!$F1 8144

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
740 1887 0.178990 AGCAACGGGCCTCTTTTCTT 60.179 50.000 0.84 0.0 46.50 2.52 F
1827 4094 0.333993 AATTGCAGTCCTGAGGGCAT 59.666 50.000 5.62 0.0 35.98 4.40 F
2846 5115 1.805943 CGTCTTGGATGTTGTGCATGA 59.194 47.619 0.00 0.0 38.06 3.07 F
3294 5564 1.262950 TGCATGTCTGTAACGCACAAC 59.737 47.619 0.00 0.0 36.48 3.32 F
4781 7054 0.179009 ATGGGGATCGCACCTGATTG 60.179 55.000 12.32 0.0 38.87 2.67 F
5922 8299 0.108945 CGTTGTACTCCCTCCGTTCC 60.109 60.000 0.00 0.0 0.00 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2574 4842 0.036164 TGATACGCAGGGCAAAGTGT 59.964 50.000 0.00 0.0 0.00 3.55 R
2957 5226 2.039084 TCCTGGAACTCCTCTTCTTTGC 59.961 50.000 0.00 0.0 36.82 3.68 R
4399 6672 1.753073 CATTCAAGCAGGGGAATGGAC 59.247 52.381 6.49 0.0 44.10 4.02 R
5208 7485 1.066143 AGTCCGCACTTCCATTACCAG 60.066 52.381 0.00 0.0 0.00 4.00 R
6303 8686 1.117150 GGTCTGGCCATGCATCAAAT 58.883 50.000 5.51 0.0 37.17 2.32 R
7798 10384 0.317160 TCGATTTGGTCACGAGCTGT 59.683 50.000 0.00 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 6.660949 CCCCAACTTATTTGAGATTGAAGACT 59.339 38.462 0.00 0.00 37.39 3.24
40 41 7.177392 CCCCAACTTATTTGAGATTGAAGACTT 59.823 37.037 0.00 0.00 37.39 3.01
41 42 8.025445 CCCAACTTATTTGAGATTGAAGACTTG 58.975 37.037 0.00 0.00 37.39 3.16
42 43 8.571336 CCAACTTATTTGAGATTGAAGACTTGT 58.429 33.333 0.00 0.00 37.39 3.16
43 44 9.956720 CAACTTATTTGAGATTGAAGACTTGTT 57.043 29.630 0.00 0.00 37.39 2.83
44 45 9.956720 AACTTATTTGAGATTGAAGACTTGTTG 57.043 29.630 0.00 0.00 0.00 3.33
45 46 9.125026 ACTTATTTGAGATTGAAGACTTGTTGT 57.875 29.630 0.00 0.00 0.00 3.32
46 47 9.956720 CTTATTTGAGATTGAAGACTTGTTGTT 57.043 29.630 0.00 0.00 0.00 2.83
47 48 9.734620 TTATTTGAGATTGAAGACTTGTTGTTG 57.265 29.630 0.00 0.00 0.00 3.33
48 49 6.757897 TTGAGATTGAAGACTTGTTGTTGT 57.242 33.333 0.00 0.00 0.00 3.32
49 50 6.757897 TGAGATTGAAGACTTGTTGTTGTT 57.242 33.333 0.00 0.00 0.00 2.83
50 51 6.554419 TGAGATTGAAGACTTGTTGTTGTTG 58.446 36.000 0.00 0.00 0.00 3.33
149 150 9.890352 CCAAAAGAAAACATGAAAGAAACAAAA 57.110 25.926 0.00 0.00 0.00 2.44
271 272 9.023967 CAATGAAAACCTTAAAGAGAAACACAG 57.976 33.333 0.00 0.00 0.00 3.66
272 273 7.095695 TGAAAACCTTAAAGAGAAACACAGG 57.904 36.000 0.00 0.00 0.00 4.00
276 277 6.248569 ACCTTAAAGAGAAACACAGGAAGA 57.751 37.500 0.00 0.00 0.00 2.87
277 278 6.659824 ACCTTAAAGAGAAACACAGGAAGAA 58.340 36.000 0.00 0.00 0.00 2.52
421 422 5.824097 ACAACCCGAACCATTATATACAACC 59.176 40.000 0.00 0.00 0.00 3.77
438 439 3.196039 ACAACCAAAAACCACCAACCTAC 59.804 43.478 0.00 0.00 0.00 3.18
440 441 2.761767 ACCAAAAACCACCAACCTACAC 59.238 45.455 0.00 0.00 0.00 2.90
456 458 4.171754 CCTACACCTACGAAAGCAACTAC 58.828 47.826 0.00 0.00 0.00 2.73
500 502 0.266152 AGCTAGTGCATACCCCCTCT 59.734 55.000 0.00 0.00 42.74 3.69
507 509 2.029307 GCATACCCCCTCTGTCCGAC 62.029 65.000 0.00 0.00 0.00 4.79
529 531 2.171003 GAGTTTGTCCCCTCAAATGGG 58.829 52.381 0.00 0.00 46.68 4.00
538 540 4.165372 GTCCCCTCAAATGGGTGTATCTAA 59.835 45.833 0.00 0.00 45.70 2.10
736 1883 2.282462 CCAGCAACGGGCCTCTTT 60.282 61.111 0.84 0.00 46.50 2.52
737 1884 1.903404 CCAGCAACGGGCCTCTTTT 60.903 57.895 0.84 0.00 46.50 2.27
738 1885 1.581447 CAGCAACGGGCCTCTTTTC 59.419 57.895 0.84 0.00 46.50 2.29
739 1886 0.890996 CAGCAACGGGCCTCTTTTCT 60.891 55.000 0.84 0.00 46.50 2.52
740 1887 0.178990 AGCAACGGGCCTCTTTTCTT 60.179 50.000 0.84 0.00 46.50 2.52
741 1888 0.673985 GCAACGGGCCTCTTTTCTTT 59.326 50.000 0.84 0.00 36.11 2.52
742 1889 1.068588 GCAACGGGCCTCTTTTCTTTT 59.931 47.619 0.84 0.00 36.11 2.27
743 1890 2.862530 GCAACGGGCCTCTTTTCTTTTC 60.863 50.000 0.84 0.00 36.11 2.29
909 3173 3.981071 TGAAATCAACCCACGAGAGAT 57.019 42.857 0.00 0.00 0.00 2.75
910 3174 4.286297 TGAAATCAACCCACGAGAGATT 57.714 40.909 0.00 0.00 0.00 2.40
1443 3708 1.017387 GCTACAAGGTATGCAGTGCC 58.983 55.000 13.72 0.00 0.00 5.01
1681 3947 9.196552 GTGCTACTTTTAAATGCATTTTTCTCT 57.803 29.630 28.45 12.06 36.04 3.10
1770 4036 3.153919 TGGTGAAATTGCCCAGTAACTC 58.846 45.455 0.00 0.00 0.00 3.01
1827 4094 0.333993 AATTGCAGTCCTGAGGGCAT 59.666 50.000 5.62 0.00 35.98 4.40
1864 4131 4.024048 AGAGAAGGTGTTTGCGTTTATGTG 60.024 41.667 0.00 0.00 0.00 3.21
1889 4156 3.679389 CCACTGGTCTAGCAAAACATCT 58.321 45.455 0.00 0.00 0.00 2.90
1890 4157 4.832248 CCACTGGTCTAGCAAAACATCTA 58.168 43.478 0.00 0.00 0.00 1.98
1896 4163 7.124298 ACTGGTCTAGCAAAACATCTAGTGATA 59.876 37.037 0.00 0.00 35.13 2.15
1897 4164 7.847096 TGGTCTAGCAAAACATCTAGTGATAA 58.153 34.615 0.00 0.00 35.13 1.75
1898 4165 8.486210 TGGTCTAGCAAAACATCTAGTGATAAT 58.514 33.333 0.00 0.00 35.13 1.28
1899 4166 8.768955 GGTCTAGCAAAACATCTAGTGATAATG 58.231 37.037 0.00 0.00 35.13 1.90
1900 4167 9.319143 GTCTAGCAAAACATCTAGTGATAATGT 57.681 33.333 0.00 0.00 35.13 2.71
1928 4195 3.096092 AGGAGCAAACACCAAACAGAAA 58.904 40.909 0.00 0.00 0.00 2.52
2066 4333 1.808945 GATTAGGGCATCTCCATTGCG 59.191 52.381 0.00 0.00 41.07 4.85
2189 4456 2.728007 AGCCCCTCACTTAAAATCAGC 58.272 47.619 0.00 0.00 0.00 4.26
2291 4558 3.260269 ACATCCGAGATTAGGATCCCA 57.740 47.619 8.55 0.00 46.04 4.37
2345 4613 4.092968 CCCTTAGTGTTTCTTACGATGCAC 59.907 45.833 0.00 0.00 0.00 4.57
2588 4857 3.673484 CCCACACTTTGCCCTGCG 61.673 66.667 0.00 0.00 0.00 5.18
2597 4866 2.016318 CTTTGCCCTGCGTATCATTGA 58.984 47.619 0.00 0.00 0.00 2.57
2840 5109 7.915293 TTATGTTTATCGTCTTGGATGTTGT 57.085 32.000 0.00 0.00 0.00 3.32
2846 5115 1.805943 CGTCTTGGATGTTGTGCATGA 59.194 47.619 0.00 0.00 38.06 3.07
3294 5564 1.262950 TGCATGTCTGTAACGCACAAC 59.737 47.619 0.00 0.00 36.48 3.32
3295 5565 1.399727 GCATGTCTGTAACGCACAACC 60.400 52.381 0.00 0.00 36.48 3.77
3298 5568 1.687660 TGTCTGTAACGCACAACCCTA 59.312 47.619 0.00 0.00 36.48 3.53
3380 5650 3.801698 TGCAGTATCTTCTCTCAATGCC 58.198 45.455 0.00 0.00 0.00 4.40
3454 5724 2.301870 TGCTTCACGGTACTTCTTGGAT 59.698 45.455 0.00 0.00 0.00 3.41
3473 5743 9.851686 TCTTGGATCATATGCTTTTATTACAGT 57.148 29.630 0.00 0.00 0.00 3.55
3501 5771 9.469807 TGTATGCCAAATGTTAAGTAAAAAGTG 57.530 29.630 0.00 0.00 0.00 3.16
3638 5910 9.180678 CAAAACATTGTATGAGTCAAAACCTAC 57.819 33.333 0.00 0.00 0.00 3.18
3698 5970 9.342308 CTGTTAATAATACACTCATGGGTTGAT 57.658 33.333 0.00 0.00 32.72 2.57
3765 6037 3.057946 AGGCTTTGAAACGATTGAAGAGC 60.058 43.478 0.00 0.00 0.00 4.09
4165 6438 7.429636 TGCATTAGTGTTACTAGTCAAAACC 57.570 36.000 0.00 0.00 31.47 3.27
4185 6458 3.754850 ACCCAATAGGCGACAGTTAAAAC 59.245 43.478 0.00 0.00 40.58 2.43
4225 6498 4.788100 GTGTGTGCTTAACGAATATGCTTG 59.212 41.667 0.00 0.00 36.05 4.01
4234 6507 7.148507 GCTTAACGAATATGCTTGATATCAGCT 60.149 37.037 20.51 12.55 33.15 4.24
4295 6568 7.023575 CAGTAAAAGCTTGCAAGTTACATAGG 58.976 38.462 27.08 16.14 0.00 2.57
4399 6672 6.693315 ACGAATATTTACCACCCATTTGAG 57.307 37.500 0.00 0.00 0.00 3.02
4410 6683 1.288932 CCCATTTGAGTCCATTCCCCT 59.711 52.381 0.00 0.00 0.00 4.79
4458 6731 2.430694 TGGTTCGTGCTACTGCTATCAT 59.569 45.455 0.00 0.00 40.48 2.45
4499 6772 2.418368 TGTCCATACAAGATGGGTGC 57.582 50.000 3.81 0.00 39.60 5.01
4581 6854 2.562298 GCATTCAAAAGATGACCCACCA 59.438 45.455 0.00 0.00 37.92 4.17
4694 6967 8.629158 TGCGGATATTTGCTACTTTTATGAATT 58.371 29.630 2.39 0.00 0.00 2.17
4707 6980 7.308435 ACTTTTATGAATTGTCTTGTAGCTGC 58.692 34.615 0.00 0.00 0.00 5.25
4710 6983 5.909621 ATGAATTGTCTTGTAGCTGCATT 57.090 34.783 4.98 0.00 0.00 3.56
4781 7054 0.179009 ATGGGGATCGCACCTGATTG 60.179 55.000 12.32 0.00 38.87 2.67
4786 7059 0.317603 GATCGCACCTGATTGCATGC 60.318 55.000 11.82 11.82 43.15 4.06
4905 7178 3.053896 GTGGCCCAACTACCACGC 61.054 66.667 0.00 0.00 46.32 5.34
5208 7485 4.218417 TCTTTTGGTTATTCTTGCAGAGGC 59.782 41.667 0.00 0.00 41.68 4.70
5390 7765 4.332543 CAGCTGACTGTTGTACTGTTGAAA 59.667 41.667 8.42 0.00 39.22 2.69
5449 7824 7.680442 TTTCATGCAGTTACTATTACAGCAA 57.320 32.000 0.00 0.00 40.61 3.91
5639 8014 7.418139 GGTTCCCTTTTGGTTAGTATGTTTGTT 60.418 37.037 0.00 0.00 38.10 2.83
5670 8045 5.426833 ACAGTATGACCTGCTTAGAGGAATT 59.573 40.000 0.00 0.00 39.69 2.17
5672 8047 5.663106 AGTATGACCTGCTTAGAGGAATTGA 59.337 40.000 0.00 0.00 36.51 2.57
5689 8064 7.940850 AGGAATTGAATACCGTGGAATAATTG 58.059 34.615 0.00 0.00 0.00 2.32
5783 8158 6.560003 TTGGATCCTTGAATCTTAGTAGCA 57.440 37.500 14.23 0.00 0.00 3.49
5818 8193 8.431910 TTTCTTAGTGTAGTTCTGGTTATCCT 57.568 34.615 0.00 0.00 34.23 3.24
5865 8240 7.307455 GCAGTCATTTTCGGTTATAGAGGAATC 60.307 40.741 0.00 0.00 0.00 2.52
5866 8241 7.710907 CAGTCATTTTCGGTTATAGAGGAATCA 59.289 37.037 0.00 0.00 0.00 2.57
5910 8287 3.357166 TTTCATTGGGTTGCGTTGTAC 57.643 42.857 0.00 0.00 0.00 2.90
5912 8289 2.147958 TCATTGGGTTGCGTTGTACTC 58.852 47.619 0.00 0.00 0.00 2.59
5913 8290 1.199097 CATTGGGTTGCGTTGTACTCC 59.801 52.381 0.00 0.00 0.00 3.85
5914 8291 0.535553 TTGGGTTGCGTTGTACTCCC 60.536 55.000 0.00 0.00 35.85 4.30
5915 8292 1.373812 GGGTTGCGTTGTACTCCCT 59.626 57.895 0.00 0.00 32.89 4.20
5916 8293 0.672711 GGGTTGCGTTGTACTCCCTC 60.673 60.000 0.00 0.00 32.89 4.30
5917 8294 0.672711 GGTTGCGTTGTACTCCCTCC 60.673 60.000 0.00 0.00 0.00 4.30
5918 8295 1.012486 GTTGCGTTGTACTCCCTCCG 61.012 60.000 0.00 0.00 0.00 4.63
5919 8296 1.466025 TTGCGTTGTACTCCCTCCGT 61.466 55.000 0.00 0.00 0.00 4.69
5920 8297 1.291272 GCGTTGTACTCCCTCCGTT 59.709 57.895 0.00 0.00 0.00 4.44
5921 8298 0.735287 GCGTTGTACTCCCTCCGTTC 60.735 60.000 0.00 0.00 0.00 3.95
5922 8299 0.108945 CGTTGTACTCCCTCCGTTCC 60.109 60.000 0.00 0.00 0.00 3.62
5923 8300 1.264295 GTTGTACTCCCTCCGTTCCT 58.736 55.000 0.00 0.00 0.00 3.36
5924 8301 2.450476 GTTGTACTCCCTCCGTTCCTA 58.550 52.381 0.00 0.00 0.00 2.94
5925 8302 2.827921 GTTGTACTCCCTCCGTTCCTAA 59.172 50.000 0.00 0.00 0.00 2.69
5926 8303 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
5927 8304 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
5928 8305 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
5929 8306 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
5930 8307 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
5931 8308 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
5932 8309 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
5933 8310 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
5934 8311 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
5935 8312 5.541484 TCCCTCCGTTCCTAAATATAAGTCC 59.459 44.000 0.00 0.00 0.00 3.85
5936 8313 5.543020 CCCTCCGTTCCTAAATATAAGTCCT 59.457 44.000 0.00 0.00 0.00 3.85
5937 8314 6.042897 CCCTCCGTTCCTAAATATAAGTCCTT 59.957 42.308 0.00 0.00 0.00 3.36
5938 8315 7.153315 CCTCCGTTCCTAAATATAAGTCCTTC 58.847 42.308 0.00 0.00 0.00 3.46
5939 8316 7.015389 CCTCCGTTCCTAAATATAAGTCCTTCT 59.985 40.741 0.00 0.00 0.00 2.85
5940 8317 9.075678 CTCCGTTCCTAAATATAAGTCCTTCTA 57.924 37.037 0.00 0.00 0.00 2.10
5941 8318 9.075678 TCCGTTCCTAAATATAAGTCCTTCTAG 57.924 37.037 0.00 0.00 0.00 2.43
5942 8319 9.075678 CCGTTCCTAAATATAAGTCCTTCTAGA 57.924 37.037 0.00 0.00 0.00 2.43
5955 8332 6.581712 AGTCCTTCTAGAGATCTCATTTTGC 58.418 40.000 24.39 7.60 0.00 3.68
5956 8333 6.383726 AGTCCTTCTAGAGATCTCATTTTGCT 59.616 38.462 24.39 9.57 0.00 3.91
5957 8334 6.701400 GTCCTTCTAGAGATCTCATTTTGCTC 59.299 42.308 24.39 5.92 0.00 4.26
5958 8335 5.990996 CCTTCTAGAGATCTCATTTTGCTCC 59.009 44.000 24.39 0.00 0.00 4.70
5959 8336 5.193663 TCTAGAGATCTCATTTTGCTCCG 57.806 43.478 24.39 1.01 0.00 4.63
5960 8337 3.902881 AGAGATCTCATTTTGCTCCGT 57.097 42.857 24.39 0.00 0.00 4.69
5961 8338 5.828328 TCTAGAGATCTCATTTTGCTCCGTA 59.172 40.000 24.39 2.99 0.00 4.02
5962 8339 5.543507 AGAGATCTCATTTTGCTCCGTAT 57.456 39.130 24.39 0.00 0.00 3.06
5963 8340 5.295950 AGAGATCTCATTTTGCTCCGTATG 58.704 41.667 24.39 0.00 0.00 2.39
5964 8341 5.028549 AGATCTCATTTTGCTCCGTATGT 57.971 39.130 0.00 0.00 0.00 2.29
5965 8342 6.040955 AGAGATCTCATTTTGCTCCGTATGTA 59.959 38.462 24.39 0.00 0.00 2.29
5966 8343 6.219473 AGATCTCATTTTGCTCCGTATGTAG 58.781 40.000 0.00 0.00 0.00 2.74
5967 8344 5.339008 TCTCATTTTGCTCCGTATGTAGT 57.661 39.130 0.00 0.00 0.00 2.73
5968 8345 5.348986 TCTCATTTTGCTCCGTATGTAGTC 58.651 41.667 0.00 0.00 0.00 2.59
5969 8346 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
5970 8347 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
5971 8348 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
5972 8349 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
5973 8350 5.801531 TTTGCTCCGTATGTAGTCCATAT 57.198 39.130 0.00 0.00 38.29 1.78
5974 8351 5.386958 TTGCTCCGTATGTAGTCCATATC 57.613 43.478 0.00 0.00 38.29 1.63
5975 8352 3.439129 TGCTCCGTATGTAGTCCATATCG 59.561 47.826 0.00 0.00 38.29 2.92
5976 8353 3.181499 GCTCCGTATGTAGTCCATATCGG 60.181 52.174 9.11 9.11 43.92 4.18
5977 8354 3.349927 TCCGTATGTAGTCCATATCGGG 58.650 50.000 12.99 2.34 43.39 5.14
5978 8355 3.009363 TCCGTATGTAGTCCATATCGGGA 59.991 47.826 12.99 4.10 43.39 5.14
5979 8356 3.952323 CCGTATGTAGTCCATATCGGGAT 59.048 47.826 8.08 0.00 41.66 3.85
5980 8357 4.036498 CCGTATGTAGTCCATATCGGGATC 59.964 50.000 8.08 0.00 41.66 3.36
5981 8358 4.882427 CGTATGTAGTCCATATCGGGATCT 59.118 45.833 0.00 0.00 39.62 2.75
5982 8359 5.007823 CGTATGTAGTCCATATCGGGATCTC 59.992 48.000 0.00 0.00 39.62 2.75
5983 8360 4.659529 TGTAGTCCATATCGGGATCTCT 57.340 45.455 0.00 0.00 39.62 3.10
5984 8361 5.774102 TGTAGTCCATATCGGGATCTCTA 57.226 43.478 0.00 0.00 39.62 2.43
5985 8362 5.746284 TGTAGTCCATATCGGGATCTCTAG 58.254 45.833 0.00 0.00 39.62 2.43
5986 8363 5.487845 TGTAGTCCATATCGGGATCTCTAGA 59.512 44.000 0.00 0.00 39.62 2.43
5987 8364 5.522315 AGTCCATATCGGGATCTCTAGAA 57.478 43.478 0.00 0.00 39.62 2.10
5988 8365 5.893500 AGTCCATATCGGGATCTCTAGAAA 58.106 41.667 0.00 0.00 39.62 2.52
5989 8366 5.949354 AGTCCATATCGGGATCTCTAGAAAG 59.051 44.000 0.00 0.00 39.62 2.62
5990 8367 5.946972 GTCCATATCGGGATCTCTAGAAAGA 59.053 44.000 0.00 0.00 39.62 2.52
5991 8368 5.946972 TCCATATCGGGATCTCTAGAAAGAC 59.053 44.000 0.00 0.00 34.36 3.01
5992 8369 5.949354 CCATATCGGGATCTCTAGAAAGACT 59.051 44.000 0.00 0.00 0.00 3.24
5993 8370 6.435904 CCATATCGGGATCTCTAGAAAGACTT 59.564 42.308 0.00 0.00 0.00 3.01
5994 8371 7.612244 CCATATCGGGATCTCTAGAAAGACTTA 59.388 40.741 0.00 0.00 0.00 2.24
5995 8372 9.184523 CATATCGGGATCTCTAGAAAGACTTAT 57.815 37.037 0.00 0.00 0.00 1.73
5998 8375 9.762381 ATCGGGATCTCTAGAAAGACTTATATT 57.238 33.333 0.00 0.00 0.00 1.28
5999 8376 9.589461 TCGGGATCTCTAGAAAGACTTATATTT 57.411 33.333 0.00 0.00 0.00 1.40
6010 8387 8.422566 AGAAAGACTTATATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
6011 8388 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
6012 8389 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
6013 8390 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
6014 8391 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
6015 8392 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
6016 8393 7.786464 ACTTATATTTAGGAACGGAGGGAGTAA 59.214 37.037 0.00 0.00 0.00 2.24
6017 8394 8.731591 TTATATTTAGGAACGGAGGGAGTAAT 57.268 34.615 0.00 0.00 0.00 1.89
6018 8395 4.748277 TTTAGGAACGGAGGGAGTAATG 57.252 45.455 0.00 0.00 0.00 1.90
6019 8396 2.249309 AGGAACGGAGGGAGTAATGT 57.751 50.000 0.00 0.00 0.00 2.71
6020 8397 2.547990 AGGAACGGAGGGAGTAATGTT 58.452 47.619 0.00 0.00 0.00 2.71
6021 8398 2.910977 AGGAACGGAGGGAGTAATGTTT 59.089 45.455 0.00 0.00 0.00 2.83
6102 8479 4.133078 GCTCTCAATTGCTAGCCTGTTAT 58.867 43.478 13.29 0.00 0.00 1.89
6104 8481 5.067023 GCTCTCAATTGCTAGCCTGTTATTT 59.933 40.000 13.29 0.00 0.00 1.40
6392 8778 6.697641 TCCAGAACATAAGGGAAAACTAGT 57.302 37.500 0.00 0.00 0.00 2.57
6399 8785 7.198306 ACATAAGGGAAAACTAGTTTTGTCG 57.802 36.000 32.68 17.46 42.26 4.35
6448 8834 4.562963 GGAAACGAGTACCAGATCCAAACT 60.563 45.833 0.00 0.00 0.00 2.66
6927 9313 4.618378 TGAGGGGGCCAAATACTAAATT 57.382 40.909 4.39 0.00 0.00 1.82
6928 9314 4.954089 TGAGGGGGCCAAATACTAAATTT 58.046 39.130 4.39 0.00 0.00 1.82
6929 9315 6.093617 TGAGGGGGCCAAATACTAAATTTA 57.906 37.500 4.39 0.00 0.00 1.40
6930 9316 6.688554 TGAGGGGGCCAAATACTAAATTTAT 58.311 36.000 4.39 0.00 0.00 1.40
6931 9317 7.827787 TGAGGGGGCCAAATACTAAATTTATA 58.172 34.615 4.39 0.00 0.00 0.98
6932 9318 7.726738 TGAGGGGGCCAAATACTAAATTTATAC 59.273 37.037 4.39 0.00 0.00 1.47
6933 9319 7.833000 AGGGGGCCAAATACTAAATTTATACT 58.167 34.615 4.39 0.00 0.00 2.12
6934 9320 7.948447 AGGGGGCCAAATACTAAATTTATACTC 59.052 37.037 4.39 0.00 0.00 2.59
6935 9321 7.726738 GGGGGCCAAATACTAAATTTATACTCA 59.273 37.037 4.39 0.00 0.00 3.41
6936 9322 9.309224 GGGGCCAAATACTAAATTTATACTCAT 57.691 33.333 4.39 0.00 0.00 2.90
6974 9360 7.686438 AAAAATTCCTTCACACTTTTTGCTT 57.314 28.000 0.00 0.00 30.26 3.91
6975 9361 8.785329 AAAAATTCCTTCACACTTTTTGCTTA 57.215 26.923 0.00 0.00 30.26 3.09
6976 9362 8.424274 AAAATTCCTTCACACTTTTTGCTTAG 57.576 30.769 0.00 0.00 0.00 2.18
6977 9363 5.514274 TTCCTTCACACTTTTTGCTTAGG 57.486 39.130 0.00 0.00 0.00 2.69
6978 9364 3.317993 TCCTTCACACTTTTTGCTTAGGC 59.682 43.478 0.00 0.00 39.26 3.93
6979 9365 3.319122 CCTTCACACTTTTTGCTTAGGCT 59.681 43.478 0.00 0.00 39.59 4.58
6980 9366 3.988379 TCACACTTTTTGCTTAGGCTG 57.012 42.857 0.00 0.00 39.59 4.85
6981 9367 2.622942 TCACACTTTTTGCTTAGGCTGG 59.377 45.455 0.00 0.00 39.59 4.85
6982 9368 1.963515 ACACTTTTTGCTTAGGCTGGG 59.036 47.619 0.00 0.00 39.59 4.45
6983 9369 1.273327 CACTTTTTGCTTAGGCTGGGG 59.727 52.381 0.00 0.00 39.59 4.96
6984 9370 0.897621 CTTTTTGCTTAGGCTGGGGG 59.102 55.000 0.00 0.00 39.59 5.40
7010 9396 4.729918 GCACAGCACCCCCAGGAG 62.730 72.222 0.00 0.00 36.73 3.69
7016 9402 3.569210 CACCCCCAGGAGCACACA 61.569 66.667 0.00 0.00 36.73 3.72
7017 9403 2.532715 ACCCCCAGGAGCACACAT 60.533 61.111 0.00 0.00 36.73 3.21
7018 9404 1.229820 ACCCCCAGGAGCACACATA 60.230 57.895 0.00 0.00 36.73 2.29
7019 9405 1.274703 ACCCCCAGGAGCACACATAG 61.275 60.000 0.00 0.00 36.73 2.23
7020 9406 1.153086 CCCCAGGAGCACACATAGC 60.153 63.158 0.00 0.00 0.00 2.97
7021 9407 1.630126 CCCCAGGAGCACACATAGCT 61.630 60.000 0.00 0.00 46.82 3.32
7026 9412 2.187946 AGCACACATAGCTCCGCC 59.812 61.111 0.00 0.00 38.01 6.13
7027 9413 2.125147 GCACACATAGCTCCGCCA 60.125 61.111 0.00 0.00 0.00 5.69
7028 9414 1.524621 GCACACATAGCTCCGCCAT 60.525 57.895 0.00 0.00 0.00 4.40
7055 9566 9.754382 TTTTTGTAGTCGATATACCTTATGACC 57.246 33.333 7.93 0.00 0.00 4.02
7107 9618 3.268330 CAGTATCTGTGCTGATGTGCTT 58.732 45.455 2.46 0.00 40.10 3.91
7163 9674 2.751259 CAGGCACATACACAGAAATGCT 59.249 45.455 0.00 0.00 33.57 3.79
7176 9687 0.951558 AAATGCTCGGCGAACAAACT 59.048 45.000 17.56 2.21 0.00 2.66
7221 9732 1.615424 GGGGGTCAAGGAGTAGCCA 60.615 63.158 0.00 0.00 40.02 4.75
7224 9735 0.393132 GGGTCAAGGAGTAGCCAAGC 60.393 60.000 0.00 0.00 40.02 4.01
7230 9741 3.519510 TCAAGGAGTAGCCAAGCTGTAAT 59.480 43.478 0.00 0.00 40.10 1.89
7232 9743 5.188948 TCAAGGAGTAGCCAAGCTGTAATAA 59.811 40.000 0.00 0.00 40.10 1.40
7241 9752 3.706086 CCAAGCTGTAATAATTTGCCCCT 59.294 43.478 0.00 0.00 0.00 4.79
7245 9756 4.584743 AGCTGTAATAATTTGCCCCTAAGC 59.415 41.667 0.00 0.00 0.00 3.09
7256 9767 1.682087 GCCCCTAAGCTAGGTGGTTTG 60.682 57.143 0.00 0.00 44.73 2.93
7258 9769 2.041216 CCCCTAAGCTAGGTGGTTTGTT 59.959 50.000 0.00 0.00 44.73 2.83
7262 9773 4.020128 CCTAAGCTAGGTGGTTTGTTCTCT 60.020 45.833 0.00 0.00 41.18 3.10
7307 9829 0.930726 AGTAGAGCTGTAGAGGCCCT 59.069 55.000 0.00 0.00 0.00 5.19
7308 9830 1.036707 GTAGAGCTGTAGAGGCCCTG 58.963 60.000 0.00 0.00 0.00 4.45
7309 9831 0.105964 TAGAGCTGTAGAGGCCCTGG 60.106 60.000 0.00 0.00 0.00 4.45
7319 9841 0.467804 GAGGCCCTGGATCTCAACTC 59.532 60.000 0.00 0.00 0.00 3.01
7339 9861 4.760715 ACTCTCATGGCAGAATTATCATGC 59.239 41.667 0.00 0.00 37.49 4.06
7355 9877 2.300152 TCATGCTGACGAGGAAAAGAGT 59.700 45.455 0.00 0.00 0.00 3.24
7365 9887 4.814771 ACGAGGAAAAGAGTTGGTTACTTG 59.185 41.667 0.00 0.00 37.17 3.16
7368 9890 4.887655 AGGAAAAGAGTTGGTTACTTGTGG 59.112 41.667 0.00 0.00 37.17 4.17
7381 9903 5.048991 GGTTACTTGTGGTTGTAGGATGTTG 60.049 44.000 0.00 0.00 0.00 3.33
7382 9904 3.486383 ACTTGTGGTTGTAGGATGTTGG 58.514 45.455 0.00 0.00 0.00 3.77
7402 9924 3.758023 TGGTTGAAGTTCATGCGATCATT 59.242 39.130 6.36 0.00 0.00 2.57
7422 9944 3.423154 CGGAGCGTTTGCCCAGTC 61.423 66.667 0.00 0.00 44.31 3.51
7431 9953 0.961019 TTTGCCCAGTCATGAGTTGC 59.039 50.000 12.80 12.80 0.00 4.17
7458 9980 3.247006 TCTCTAACCATTTGCCGACTC 57.753 47.619 0.00 0.00 0.00 3.36
7459 9981 1.927174 CTCTAACCATTTGCCGACTCG 59.073 52.381 0.00 0.00 0.00 4.18
7564 10087 4.534500 TCACTGTAACTTGTGGGACCATAT 59.466 41.667 0.00 0.00 35.15 1.78
7565 10088 5.722441 TCACTGTAACTTGTGGGACCATATA 59.278 40.000 0.00 0.00 35.15 0.86
7566 10089 5.815740 CACTGTAACTTGTGGGACCATATAC 59.184 44.000 0.00 0.00 0.00 1.47
7567 10090 5.013568 TGTAACTTGTGGGACCATATACG 57.986 43.478 0.00 0.00 0.00 3.06
7591 10118 2.550830 AGCAAGACGATTGTTGGTCT 57.449 45.000 0.00 0.00 42.06 3.85
7621 10148 3.629398 AGTTGCTTTGACAGAGAAGGTTG 59.371 43.478 0.00 0.00 0.00 3.77
7683 10210 4.695928 ACTTAATTTTCTCTCCGTTGCTCC 59.304 41.667 0.00 0.00 0.00 4.70
7685 10212 1.878953 TTTTCTCTCCGTTGCTCCAC 58.121 50.000 0.00 0.00 0.00 4.02
7692 10219 1.204704 CTCCGTTGCTCCACACATCTA 59.795 52.381 0.00 0.00 0.00 1.98
7756 10284 8.318412 ACATAATCAGGATTAACGGCATGTATA 58.682 33.333 5.88 0.00 36.90 1.47
7798 10384 2.447408 TGGTGCTTCGTAGGGAGATA 57.553 50.000 0.00 0.00 0.00 1.98
7903 10493 2.281208 CGCCCGGTTTCAGGACAA 60.281 61.111 0.00 0.00 0.00 3.18
7937 10587 3.181534 CGTGCGTATGTTGGTAGAAACTG 60.182 47.826 0.00 0.00 0.00 3.16
7979 12848 4.447724 CGGCTTGCTAGCTCGATAATTTTA 59.552 41.667 19.45 0.00 46.90 1.52
7980 12849 5.612709 CGGCTTGCTAGCTCGATAATTTTAC 60.613 44.000 19.45 0.00 46.90 2.01
7981 12850 5.467063 GGCTTGCTAGCTCGATAATTTTACT 59.533 40.000 19.45 0.00 46.90 2.24
7982 12851 6.645415 GGCTTGCTAGCTCGATAATTTTACTA 59.355 38.462 19.45 0.00 46.90 1.82
7983 12852 7.359347 GGCTTGCTAGCTCGATAATTTTACTAC 60.359 40.741 19.45 0.00 46.90 2.73
7984 12853 7.382759 GCTTGCTAGCTCGATAATTTTACTACT 59.617 37.037 17.23 0.00 44.27 2.57
7985 12854 9.894783 CTTGCTAGCTCGATAATTTTACTACTA 57.105 33.333 17.23 0.00 0.00 1.82
8018 12903 4.065423 CGATATCCGTATGCGCATTTTT 57.935 40.909 30.42 7.46 36.67 1.94
8052 12940 3.898123 TGCAGGATATAGGAGGTCAACTC 59.102 47.826 0.00 0.00 45.84 3.01
8082 12970 6.128172 GCTTGGCATAAGACATGTATACCATC 60.128 42.308 0.00 0.00 28.61 3.51
8083 12971 6.686484 TGGCATAAGACATGTATACCATCT 57.314 37.500 0.00 0.00 0.00 2.90
8084 12972 6.466812 TGGCATAAGACATGTATACCATCTG 58.533 40.000 0.00 0.00 0.00 2.90
8085 12973 5.352569 GGCATAAGACATGTATACCATCTGC 59.647 44.000 0.00 2.12 0.00 4.26
8086 12974 5.934043 GCATAAGACATGTATACCATCTGCA 59.066 40.000 0.00 0.00 0.00 4.41
8087 12975 6.128445 GCATAAGACATGTATACCATCTGCAC 60.128 42.308 0.00 0.00 0.00 4.57
8088 12976 3.982475 AGACATGTATACCATCTGCACG 58.018 45.455 0.00 0.00 0.00 5.34
8089 12977 3.059884 GACATGTATACCATCTGCACGG 58.940 50.000 0.00 0.00 0.00 4.94
8115 13003 4.519213 CACCTGATCCGGGTAAAACATTA 58.481 43.478 8.17 0.00 41.86 1.90
8132 13020 4.950050 ACATTAATCTGTCAGATCGGTCC 58.050 43.478 15.75 0.00 32.89 4.46
8146 13034 5.349817 CAGATCGGTCCATAGATATTTGTGC 59.650 44.000 0.00 0.00 0.00 4.57
8147 13035 3.649073 TCGGTCCATAGATATTTGTGCG 58.351 45.455 0.00 0.00 0.00 5.34
8148 13036 2.736721 CGGTCCATAGATATTTGTGCGG 59.263 50.000 0.00 0.00 0.00 5.69
8149 13037 2.484264 GGTCCATAGATATTTGTGCGGC 59.516 50.000 0.00 0.00 0.00 6.53
8150 13038 3.138304 GTCCATAGATATTTGTGCGGCA 58.862 45.455 0.00 0.00 0.00 5.69
8151 13039 3.563808 GTCCATAGATATTTGTGCGGCAA 59.436 43.478 3.23 0.00 34.87 4.52
8152 13040 4.216257 GTCCATAGATATTTGTGCGGCAAT 59.784 41.667 3.23 0.00 36.89 3.56
8153 13041 4.216042 TCCATAGATATTTGTGCGGCAATG 59.784 41.667 3.23 1.12 36.89 2.82
8154 13042 2.497107 AGATATTTGTGCGGCAATGC 57.503 45.000 3.23 0.00 36.89 3.56
8155 13043 2.026641 AGATATTTGTGCGGCAATGCT 58.973 42.857 3.23 0.00 36.89 3.79
8156 13044 3.213506 AGATATTTGTGCGGCAATGCTA 58.786 40.909 3.23 0.00 36.89 3.49
8157 13045 2.842208 TATTTGTGCGGCAATGCTAC 57.158 45.000 3.23 3.12 36.89 3.58
8158 13046 0.887247 ATTTGTGCGGCAATGCTACA 59.113 45.000 3.23 5.83 36.89 2.74
8159 13047 0.039617 TTTGTGCGGCAATGCTACAC 60.040 50.000 19.11 19.11 36.89 2.90
8160 13048 2.098298 GTGCGGCAATGCTACACG 59.902 61.111 3.23 6.37 35.36 4.49
8161 13049 2.358125 TGCGGCAATGCTACACGT 60.358 55.556 4.82 0.00 35.36 4.49
8162 13050 1.079750 TGCGGCAATGCTACACGTA 60.080 52.632 4.82 0.00 35.36 3.57
8163 13051 1.347221 GCGGCAATGCTACACGTAC 59.653 57.895 4.82 0.00 0.00 3.67
8164 13052 1.355796 GCGGCAATGCTACACGTACA 61.356 55.000 4.82 0.00 0.00 2.90
8165 13053 1.072391 CGGCAATGCTACACGTACAA 58.928 50.000 4.82 0.00 0.00 2.41
8166 13054 1.461512 CGGCAATGCTACACGTACAAA 59.538 47.619 4.82 0.00 0.00 2.83
8167 13055 2.723618 CGGCAATGCTACACGTACAAAC 60.724 50.000 4.82 0.00 0.00 2.93
8184 13072 7.227685 GTACAAACGATTTACACGCTTTTAC 57.772 36.000 0.00 0.00 0.00 2.01
8185 13073 5.808403 ACAAACGATTTACACGCTTTTACA 58.192 33.333 0.00 0.00 0.00 2.41
8186 13074 5.905181 ACAAACGATTTACACGCTTTTACAG 59.095 36.000 0.00 0.00 0.00 2.74
8187 13075 4.657075 ACGATTTACACGCTTTTACAGG 57.343 40.909 0.00 0.00 0.00 4.00
8188 13076 4.309099 ACGATTTACACGCTTTTACAGGA 58.691 39.130 0.00 0.00 0.00 3.86
8189 13077 4.933400 ACGATTTACACGCTTTTACAGGAT 59.067 37.500 0.00 0.00 0.00 3.24
8190 13078 5.163893 ACGATTTACACGCTTTTACAGGATG 60.164 40.000 0.00 0.00 46.00 3.51
8191 13079 5.560966 ATTTACACGCTTTTACAGGATGG 57.439 39.130 0.00 0.00 43.62 3.51
8192 13080 2.561478 ACACGCTTTTACAGGATGGT 57.439 45.000 0.00 0.00 43.62 3.55
8193 13081 2.858745 ACACGCTTTTACAGGATGGTT 58.141 42.857 0.00 0.00 43.62 3.67
8194 13082 4.010667 ACACGCTTTTACAGGATGGTTA 57.989 40.909 0.00 0.00 43.62 2.85
8195 13083 4.391155 ACACGCTTTTACAGGATGGTTAA 58.609 39.130 0.00 0.00 43.62 2.01
8196 13084 4.214758 ACACGCTTTTACAGGATGGTTAAC 59.785 41.667 0.00 0.00 43.62 2.01
8197 13085 4.454504 CACGCTTTTACAGGATGGTTAACT 59.545 41.667 5.42 0.00 43.62 2.24
8198 13086 5.048991 CACGCTTTTACAGGATGGTTAACTT 60.049 40.000 5.42 0.00 43.62 2.66
8199 13087 5.533528 ACGCTTTTACAGGATGGTTAACTTT 59.466 36.000 5.42 0.00 43.62 2.66
8200 13088 5.856455 CGCTTTTACAGGATGGTTAACTTTG 59.144 40.000 5.42 0.51 43.62 2.77
8201 13089 6.293735 CGCTTTTACAGGATGGTTAACTTTGA 60.294 38.462 5.42 0.00 43.62 2.69
8202 13090 7.574967 CGCTTTTACAGGATGGTTAACTTTGAT 60.575 37.037 5.42 0.00 43.62 2.57
8203 13091 8.088365 GCTTTTACAGGATGGTTAACTTTGATT 58.912 33.333 5.42 0.00 43.62 2.57
8204 13092 9.410556 CTTTTACAGGATGGTTAACTTTGATTG 57.589 33.333 5.42 1.02 43.62 2.67
8205 13093 5.982890 ACAGGATGGTTAACTTTGATTGG 57.017 39.130 5.42 0.00 43.62 3.16
8206 13094 5.393866 ACAGGATGGTTAACTTTGATTGGT 58.606 37.500 5.42 0.00 43.62 3.67
8207 13095 5.476945 ACAGGATGGTTAACTTTGATTGGTC 59.523 40.000 5.42 0.00 43.62 4.02
8208 13096 5.476599 CAGGATGGTTAACTTTGATTGGTCA 59.523 40.000 5.42 0.00 0.00 4.02
8209 13097 6.015519 CAGGATGGTTAACTTTGATTGGTCAA 60.016 38.462 5.42 0.00 42.41 3.18
8210 13098 6.725834 AGGATGGTTAACTTTGATTGGTCAAT 59.274 34.615 5.42 0.00 43.49 2.57
8211 13099 7.893302 AGGATGGTTAACTTTGATTGGTCAATA 59.107 33.333 5.42 0.00 43.49 1.90
8212 13100 8.190784 GGATGGTTAACTTTGATTGGTCAATAG 58.809 37.037 5.42 0.00 43.49 1.73
8213 13101 8.877864 ATGGTTAACTTTGATTGGTCAATAGA 57.122 30.769 5.42 0.00 43.49 1.98
8214 13102 8.877864 TGGTTAACTTTGATTGGTCAATAGAT 57.122 30.769 5.42 0.00 43.49 1.98
8215 13103 9.967451 TGGTTAACTTTGATTGGTCAATAGATA 57.033 29.630 5.42 0.00 43.49 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 5.083122 TCAATCTCAAATAAGTTGGGGCAA 58.917 37.500 0.00 0.00 38.37 4.52
39 40 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
40 41 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
41 42 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
42 43 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
43 44 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
44 45 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
45 46 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
46 47 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
47 48 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
48 49 7.328737 GGTATACAACAACAACAACAACAACAA 59.671 33.333 5.01 0.00 0.00 2.83
49 50 6.807230 GGTATACAACAACAACAACAACAACA 59.193 34.615 5.01 0.00 0.00 3.33
50 51 7.008810 CAGGTATACAACAACAACAACAACAAC 59.991 37.037 5.01 0.00 0.00 3.32
193 194 8.495949 GCTATTTCTTTGGCTTTTAGGTTTTTC 58.504 33.333 0.00 0.00 0.00 2.29
298 299 7.227873 TCTTGTTTTTCTTTGGGGTTTTCTTT 58.772 30.769 0.00 0.00 0.00 2.52
383 384 3.628487 TCGGGTTGTCTGGTTTTTAGTTG 59.372 43.478 0.00 0.00 0.00 3.16
421 422 3.028130 AGGTGTAGGTTGGTGGTTTTTG 58.972 45.455 0.00 0.00 0.00 2.44
438 439 1.990563 CGGTAGTTGCTTTCGTAGGTG 59.009 52.381 0.00 0.00 0.00 4.00
440 441 2.642139 TCGGTAGTTGCTTTCGTAGG 57.358 50.000 0.00 0.00 0.00 3.18
456 458 1.202076 GCTTTCGCTCATTCCTTTCGG 60.202 52.381 0.00 0.00 0.00 4.30
488 490 1.760875 TCGGACAGAGGGGGTATGC 60.761 63.158 0.00 0.00 0.00 3.14
507 509 2.821969 CCATTTGAGGGGACAAACTCTG 59.178 50.000 0.00 0.00 41.49 3.35
538 540 6.992715 GGATGTATCTAGCACTAATTTGGTGT 59.007 38.462 13.54 4.55 37.07 4.16
541 543 8.627208 AATGGATGTATCTAGCACTAATTTGG 57.373 34.615 0.00 0.00 0.00 3.28
549 551 9.109393 TGTTTCTTAAATGGATGTATCTAGCAC 57.891 33.333 0.00 0.00 0.00 4.40
583 585 7.162082 ACTCTCTCTGTCCGATAAAATTTGTT 58.838 34.615 0.00 0.00 0.00 2.83
588 590 7.429633 CACATACTCTCTCTGTCCGATAAAAT 58.570 38.462 0.00 0.00 0.00 1.82
625 627 2.123854 ACGATAGCTCCCCTCGCA 60.124 61.111 0.00 0.00 42.67 5.10
689 1835 3.774734 TGGTACTTACAGAGAGCTGGAA 58.225 45.455 0.00 0.00 46.60 3.53
762 1909 0.318120 CAAAGCCCCGTTGCTGATTT 59.682 50.000 0.00 0.00 41.80 2.17
847 3108 0.733150 GCTGGGCGGAAGTTGATTAC 59.267 55.000 0.00 0.00 0.00 1.89
875 3138 4.923281 GTTGATTTCAAATTGACCGAAGGG 59.077 41.667 0.00 0.00 45.92 3.95
1443 3708 2.800250 AGAAACTCAAGGGCAGGAATG 58.200 47.619 0.00 0.00 0.00 2.67
1539 3805 5.381174 TTCCGACGAGACTTCATAGAAAA 57.619 39.130 0.00 0.00 0.00 2.29
1552 3818 2.222819 GCAGCTTGTAAATTCCGACGAG 60.223 50.000 0.00 0.00 0.00 4.18
1681 3947 2.121291 TTAATTGGTCGCAGCCATGA 57.879 45.000 0.00 0.00 38.48 3.07
1796 4063 4.461781 AGGACTGCAATTTTCCATCAGAAG 59.538 41.667 6.20 0.00 35.40 2.85
1845 4112 3.490078 CCACACATAAACGCAAACACCTT 60.490 43.478 0.00 0.00 0.00 3.50
1864 4131 0.250727 TTTGCTAGACCAGTGGCCAC 60.251 55.000 29.22 29.22 0.00 5.01
1889 4156 8.856153 TTGCTCCTGTTTTTACATTATCACTA 57.144 30.769 0.00 0.00 0.00 2.74
1890 4157 7.759489 TTGCTCCTGTTTTTACATTATCACT 57.241 32.000 0.00 0.00 0.00 3.41
1896 4163 5.105146 TGGTGTTTGCTCCTGTTTTTACATT 60.105 36.000 0.00 0.00 0.00 2.71
1897 4164 4.404073 TGGTGTTTGCTCCTGTTTTTACAT 59.596 37.500 0.00 0.00 0.00 2.29
1898 4165 3.764434 TGGTGTTTGCTCCTGTTTTTACA 59.236 39.130 0.00 0.00 0.00 2.41
1899 4166 4.379339 TGGTGTTTGCTCCTGTTTTTAC 57.621 40.909 0.00 0.00 0.00 2.01
1900 4167 5.172205 GTTTGGTGTTTGCTCCTGTTTTTA 58.828 37.500 0.00 0.00 0.00 1.52
1901 4168 3.971245 TTGGTGTTTGCTCCTGTTTTT 57.029 38.095 0.00 0.00 0.00 1.94
1902 4169 3.007398 TGTTTGGTGTTTGCTCCTGTTTT 59.993 39.130 0.00 0.00 0.00 2.43
1903 4170 2.564947 TGTTTGGTGTTTGCTCCTGTTT 59.435 40.909 0.00 0.00 0.00 2.83
1904 4171 2.166254 CTGTTTGGTGTTTGCTCCTGTT 59.834 45.455 0.00 0.00 0.00 3.16
1905 4172 1.750778 CTGTTTGGTGTTTGCTCCTGT 59.249 47.619 0.00 0.00 0.00 4.00
1906 4173 2.023673 TCTGTTTGGTGTTTGCTCCTG 58.976 47.619 0.00 0.00 0.00 3.86
1907 4174 2.435372 TCTGTTTGGTGTTTGCTCCT 57.565 45.000 0.00 0.00 0.00 3.69
1908 4175 3.518634 TTTCTGTTTGGTGTTTGCTCC 57.481 42.857 0.00 0.00 0.00 4.70
1928 4195 3.622455 GCCTGGTCTATGCCACTAGTTTT 60.622 47.826 0.00 0.00 34.36 2.43
2029 4296 5.070685 CCTAATCCTTTAACATAGGCCCAC 58.929 45.833 0.00 0.00 32.59 4.61
2066 4333 6.145696 CCTTAAACATCTATACAAGCGCCTAC 59.854 42.308 2.29 0.00 0.00 3.18
2171 4438 2.379005 GGGCTGATTTTAAGTGAGGGG 58.621 52.381 0.00 0.00 0.00 4.79
2173 4440 3.085952 TGGGGCTGATTTTAAGTGAGG 57.914 47.619 0.00 0.00 0.00 3.86
2189 4456 0.811616 GCGCTCTAGTTGACATGGGG 60.812 60.000 0.00 0.00 0.00 4.96
2226 4493 2.279784 CGCCTGCTAGCTAGTGCC 60.280 66.667 21.62 6.28 40.80 5.01
2229 4496 2.759973 TGGCGCCTGCTAGCTAGT 60.760 61.111 29.70 0.00 42.25 2.57
2291 4558 1.211190 GACGCTAAGGACGGACGTT 59.789 57.895 0.00 0.00 37.05 3.99
2574 4842 0.036164 TGATACGCAGGGCAAAGTGT 59.964 50.000 0.00 0.00 0.00 3.55
2840 5109 6.822667 ATTGACAGATTGTAACTTCATGCA 57.177 33.333 0.00 0.00 0.00 3.96
2846 5115 7.425606 GTCACCAAATTGACAGATTGTAACTT 58.574 34.615 0.00 0.00 44.62 2.66
2957 5226 2.039084 TCCTGGAACTCCTCTTCTTTGC 59.961 50.000 0.00 0.00 36.82 3.68
3141 5410 7.934855 AAATCATTTCTCTAGTGATGTTGCT 57.065 32.000 0.00 0.00 33.19 3.91
3520 5790 8.747538 AAAAAGAAAGTGTACCACATACTCTT 57.252 30.769 0.00 0.00 45.33 2.85
3638 5910 4.751098 CACATGGTTTCCTTTGTTTCATGG 59.249 41.667 0.00 0.00 36.00 3.66
3698 5970 8.991026 CCATTCAAGAAAAGATTTAACATGCAA 58.009 29.630 0.00 0.00 0.00 4.08
3765 6037 4.110036 TCCACGATTGTCAGTAGATGTG 57.890 45.455 0.00 0.00 0.00 3.21
3837 6109 4.913355 TCCCCATTCTCCATTAGCTTCATA 59.087 41.667 0.00 0.00 0.00 2.15
3931 6203 4.853468 TCAGAAGGTTATTGCCATACCA 57.147 40.909 0.00 0.00 0.00 3.25
4165 6438 3.680937 TCGTTTTAACTGTCGCCTATTGG 59.319 43.478 0.00 0.00 0.00 3.16
4185 6458 5.190342 CACACACATTTCATATAGCGTTCG 58.810 41.667 0.00 0.00 0.00 3.95
4366 6639 8.626526 GGGTGGTAAATATTCGTTTCATGTATT 58.373 33.333 0.00 0.00 0.00 1.89
4368 6641 7.110810 TGGGTGGTAAATATTCGTTTCATGTA 58.889 34.615 0.00 0.00 0.00 2.29
4370 6643 6.443934 TGGGTGGTAAATATTCGTTTCATG 57.556 37.500 0.00 0.00 0.00 3.07
4371 6644 7.654022 AATGGGTGGTAAATATTCGTTTCAT 57.346 32.000 0.00 0.00 0.00 2.57
4372 6645 7.176865 TCAAATGGGTGGTAAATATTCGTTTCA 59.823 33.333 0.00 0.00 0.00 2.69
4373 6646 7.540299 TCAAATGGGTGGTAAATATTCGTTTC 58.460 34.615 0.00 0.00 0.00 2.78
4374 6647 7.177744 ACTCAAATGGGTGGTAAATATTCGTTT 59.822 33.333 0.00 0.00 0.00 3.60
4375 6648 6.661805 ACTCAAATGGGTGGTAAATATTCGTT 59.338 34.615 0.00 0.00 0.00 3.85
4376 6649 6.184789 ACTCAAATGGGTGGTAAATATTCGT 58.815 36.000 0.00 0.00 0.00 3.85
4383 6656 3.885976 TGGACTCAAATGGGTGGTAAA 57.114 42.857 0.00 0.00 0.00 2.01
4399 6672 1.753073 CATTCAAGCAGGGGAATGGAC 59.247 52.381 6.49 0.00 44.10 4.02
4410 6683 8.758829 TCTAAAGTACTTCTATCCATTCAAGCA 58.241 33.333 8.95 0.00 0.00 3.91
4420 6693 7.167801 GCACGAACCATCTAAAGTACTTCTATC 59.832 40.741 8.95 0.00 0.00 2.08
4458 6731 3.032265 TGGTGCTAGCTCCAGAATAGA 57.968 47.619 29.96 9.69 35.03 1.98
4491 6764 4.770795 ACTAAGTTATGTCAGCACCCATC 58.229 43.478 0.00 0.00 0.00 3.51
4495 6768 4.093556 GCTTGACTAAGTTATGTCAGCACC 59.906 45.833 18.36 8.32 42.98 5.01
4499 6772 8.598924 CATGTTAGCTTGACTAAGTTATGTCAG 58.401 37.037 0.00 9.36 41.56 3.51
4560 6833 2.562298 TGGTGGGTCATCTTTTGAATGC 59.438 45.455 0.00 0.00 35.70 3.56
4581 6854 7.014808 GCTGGGTAGATTCTTAGTTCATCTACT 59.985 40.741 18.73 0.00 44.72 2.57
4781 7054 1.937899 GGCAAAATGATGGAAGCATGC 59.062 47.619 10.51 10.51 45.83 4.06
4786 7059 4.673534 GCAAAAGGCAAAATGATGGAAG 57.326 40.909 0.00 0.00 43.97 3.46
4905 7178 2.169352 CACTGTCCATCTCCAGTAAGGG 59.831 54.545 0.00 0.00 39.83 3.95
5208 7485 1.066143 AGTCCGCACTTCCATTACCAG 60.066 52.381 0.00 0.00 0.00 4.00
5324 7603 9.642327 TGCTGTAACGAAGAACTAAATTATACA 57.358 29.630 0.00 0.00 0.00 2.29
5338 7713 7.197017 ACTACATATCTCTTGCTGTAACGAAG 58.803 38.462 0.00 0.00 0.00 3.79
5639 8014 8.301252 TCTAAGCAGGTCATACTGTAATTACA 57.699 34.615 17.16 17.16 40.59 2.41
5670 8045 6.826231 ACATCACAATTATTCCACGGTATTCA 59.174 34.615 0.00 0.00 0.00 2.57
5672 8047 6.039270 CCACATCACAATTATTCCACGGTATT 59.961 38.462 0.00 0.00 0.00 1.89
5689 8064 6.932356 ACATGATAACTTCATCCACATCAC 57.068 37.500 0.00 0.00 43.40 3.06
5818 8193 3.544684 CAATGAACCTCGGATCATTCCA 58.455 45.455 15.85 0.00 42.84 3.53
5910 8287 6.295180 GGACTTATATTTAGGAACGGAGGGAG 60.295 46.154 0.00 0.00 0.00 4.30
5912 8289 5.543020 AGGACTTATATTTAGGAACGGAGGG 59.457 44.000 0.00 0.00 0.00 4.30
5913 8290 6.667558 AGGACTTATATTTAGGAACGGAGG 57.332 41.667 0.00 0.00 0.00 4.30
5914 8291 7.953752 AGAAGGACTTATATTTAGGAACGGAG 58.046 38.462 0.00 0.00 0.00 4.63
5915 8292 7.909485 AGAAGGACTTATATTTAGGAACGGA 57.091 36.000 0.00 0.00 0.00 4.69
5916 8293 9.075678 TCTAGAAGGACTTATATTTAGGAACGG 57.924 37.037 0.00 0.00 0.00 4.44
5929 8306 8.200792 GCAAAATGAGATCTCTAGAAGGACTTA 58.799 37.037 22.95 0.00 0.00 2.24
5930 8307 7.047271 GCAAAATGAGATCTCTAGAAGGACTT 58.953 38.462 22.95 0.00 0.00 3.01
5931 8308 6.383726 AGCAAAATGAGATCTCTAGAAGGACT 59.616 38.462 22.95 8.66 0.00 3.85
5932 8309 6.581712 AGCAAAATGAGATCTCTAGAAGGAC 58.418 40.000 22.95 6.68 0.00 3.85
5933 8310 6.183360 GGAGCAAAATGAGATCTCTAGAAGGA 60.183 42.308 22.95 1.64 0.00 3.36
5934 8311 5.990996 GGAGCAAAATGAGATCTCTAGAAGG 59.009 44.000 22.95 9.74 0.00 3.46
5935 8312 5.691305 CGGAGCAAAATGAGATCTCTAGAAG 59.309 44.000 22.95 11.48 0.00 2.85
5936 8313 5.127845 ACGGAGCAAAATGAGATCTCTAGAA 59.872 40.000 22.95 3.55 0.00 2.10
5937 8314 4.646945 ACGGAGCAAAATGAGATCTCTAGA 59.353 41.667 22.95 3.93 0.00 2.43
5938 8315 4.942852 ACGGAGCAAAATGAGATCTCTAG 58.057 43.478 22.95 9.55 0.00 2.43
5939 8316 6.040955 ACATACGGAGCAAAATGAGATCTCTA 59.959 38.462 22.95 10.37 0.00 2.43
5940 8317 3.902881 ACGGAGCAAAATGAGATCTCT 57.097 42.857 22.95 6.58 0.00 3.10
5941 8318 5.053145 ACATACGGAGCAAAATGAGATCTC 58.947 41.667 16.21 16.21 0.00 2.75
5942 8319 5.028549 ACATACGGAGCAAAATGAGATCT 57.971 39.130 0.00 0.00 0.00 2.75
5943 8320 5.986135 ACTACATACGGAGCAAAATGAGATC 59.014 40.000 0.00 0.00 0.00 2.75
5944 8321 5.918608 ACTACATACGGAGCAAAATGAGAT 58.081 37.500 0.00 0.00 0.00 2.75
5945 8322 5.339008 ACTACATACGGAGCAAAATGAGA 57.661 39.130 0.00 0.00 0.00 3.27
5946 8323 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
5947 8324 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
5948 8325 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
5949 8326 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
5950 8327 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
5951 8328 5.564063 CGATATGGACTACATACGGAGCAAA 60.564 44.000 0.00 0.00 44.41 3.68
5952 8329 4.082949 CGATATGGACTACATACGGAGCAA 60.083 45.833 0.00 0.00 44.41 3.91
5953 8330 3.439129 CGATATGGACTACATACGGAGCA 59.561 47.826 0.00 0.00 44.41 4.26
5954 8331 4.017380 CGATATGGACTACATACGGAGC 57.983 50.000 0.00 0.00 44.41 4.70
5957 8334 3.349927 TCCCGATATGGACTACATACGG 58.650 50.000 12.14 12.14 44.41 4.02
5958 8335 4.882427 AGATCCCGATATGGACTACATACG 59.118 45.833 0.00 0.00 44.41 3.06
5959 8336 6.123651 AGAGATCCCGATATGGACTACATAC 58.876 44.000 0.00 0.00 44.41 2.39
5960 8337 6.328782 AGAGATCCCGATATGGACTACATA 57.671 41.667 0.00 0.00 45.60 2.29
5961 8338 5.199982 AGAGATCCCGATATGGACTACAT 57.800 43.478 0.00 0.00 42.00 2.29
5962 8339 4.659529 AGAGATCCCGATATGGACTACA 57.340 45.455 0.00 0.00 42.00 2.74
5963 8340 5.991861 TCTAGAGATCCCGATATGGACTAC 58.008 45.833 0.00 0.00 42.00 2.73
5964 8341 6.638021 TTCTAGAGATCCCGATATGGACTA 57.362 41.667 0.00 0.00 42.00 2.59
5965 8342 5.522315 TTCTAGAGATCCCGATATGGACT 57.478 43.478 0.00 0.00 42.00 3.85
5966 8343 5.946972 TCTTTCTAGAGATCCCGATATGGAC 59.053 44.000 0.00 0.00 42.00 4.02
5967 8344 5.946972 GTCTTTCTAGAGATCCCGATATGGA 59.053 44.000 0.00 0.00 42.00 3.41
5968 8345 5.949354 AGTCTTTCTAGAGATCCCGATATGG 59.051 44.000 0.00 0.00 37.55 2.74
5969 8346 7.461182 AAGTCTTTCTAGAGATCCCGATATG 57.539 40.000 0.00 0.00 0.00 1.78
5972 8349 9.762381 AATATAAGTCTTTCTAGAGATCCCGAT 57.238 33.333 0.00 0.00 0.00 4.18
5973 8350 9.589461 AAATATAAGTCTTTCTAGAGATCCCGA 57.411 33.333 0.00 0.00 0.00 5.14
5984 8361 8.422566 CCTCCGTTCCTAAATATAAGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
5985 8362 7.656542 CCCTCCGTTCCTAAATATAAGTCTTTC 59.343 40.741 0.00 0.00 0.00 2.62
5986 8363 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
5987 8364 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
5988 8365 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
5989 8366 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
5990 8367 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
5991 8368 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
5992 8369 8.591072 CATTACTCCCTCCGTTCCTAAATATAA 58.409 37.037 0.00 0.00 0.00 0.98
5993 8370 7.731688 ACATTACTCCCTCCGTTCCTAAATATA 59.268 37.037 0.00 0.00 0.00 0.86
5994 8371 6.557633 ACATTACTCCCTCCGTTCCTAAATAT 59.442 38.462 0.00 0.00 0.00 1.28
5995 8372 5.901276 ACATTACTCCCTCCGTTCCTAAATA 59.099 40.000 0.00 0.00 0.00 1.40
5996 8373 4.720273 ACATTACTCCCTCCGTTCCTAAAT 59.280 41.667 0.00 0.00 0.00 1.40
5997 8374 4.098894 ACATTACTCCCTCCGTTCCTAAA 58.901 43.478 0.00 0.00 0.00 1.85
5998 8375 3.716431 ACATTACTCCCTCCGTTCCTAA 58.284 45.455 0.00 0.00 0.00 2.69
5999 8376 3.393426 ACATTACTCCCTCCGTTCCTA 57.607 47.619 0.00 0.00 0.00 2.94
6000 8377 2.249309 ACATTACTCCCTCCGTTCCT 57.751 50.000 0.00 0.00 0.00 3.36
6001 8378 3.345508 AAACATTACTCCCTCCGTTCC 57.654 47.619 0.00 0.00 0.00 3.62
6002 8379 5.915175 AGATAAACATTACTCCCTCCGTTC 58.085 41.667 0.00 0.00 0.00 3.95
6003 8380 5.952347 AGATAAACATTACTCCCTCCGTT 57.048 39.130 0.00 0.00 0.00 4.44
6004 8381 7.613551 ATTAGATAAACATTACTCCCTCCGT 57.386 36.000 0.00 0.00 0.00 4.69
6005 8382 8.904099 AAATTAGATAAACATTACTCCCTCCG 57.096 34.615 0.00 0.00 0.00 4.63
6006 8383 9.847224 TGAAATTAGATAAACATTACTCCCTCC 57.153 33.333 0.00 0.00 0.00 4.30
6037 8414 4.769688 TCACGCTCATCCACTTTATCATT 58.230 39.130 0.00 0.00 0.00 2.57
6052 8429 2.673368 CAGTAAACCTGGAATCACGCTC 59.327 50.000 0.00 0.00 37.54 5.03
6303 8686 1.117150 GGTCTGGCCATGCATCAAAT 58.883 50.000 5.51 0.00 37.17 2.32
6392 8778 3.082548 TGTCCTGTTCAAACCGACAAAA 58.917 40.909 9.28 0.00 35.53 2.44
6399 8785 1.676006 CCAGTGTGTCCTGTTCAAACC 59.324 52.381 0.00 0.00 0.00 3.27
6531 8917 6.064735 TGCAGTTATATGATATGGATGCCA 57.935 37.500 12.11 0.00 38.19 4.92
6906 9292 4.618378 AATTTAGTATTTGGCCCCCTCA 57.382 40.909 0.00 0.00 0.00 3.86
6907 9293 7.948447 AGTATAAATTTAGTATTTGGCCCCCTC 59.052 37.037 0.00 0.00 0.00 4.30
6908 9294 7.833000 AGTATAAATTTAGTATTTGGCCCCCT 58.167 34.615 0.00 0.00 0.00 4.79
6909 9295 7.726738 TGAGTATAAATTTAGTATTTGGCCCCC 59.273 37.037 0.00 0.00 0.00 5.40
6910 9296 8.700439 TGAGTATAAATTTAGTATTTGGCCCC 57.300 34.615 0.00 0.00 0.00 5.80
6950 9336 7.686438 AAGCAAAAAGTGTGAAGGAATTTTT 57.314 28.000 0.00 0.00 34.35 1.94
6951 9337 7.495606 CCTAAGCAAAAAGTGTGAAGGAATTTT 59.504 33.333 0.00 0.00 0.00 1.82
6952 9338 6.986231 CCTAAGCAAAAAGTGTGAAGGAATTT 59.014 34.615 0.00 0.00 0.00 1.82
6953 9339 6.515832 CCTAAGCAAAAAGTGTGAAGGAATT 58.484 36.000 0.00 0.00 0.00 2.17
6954 9340 5.509670 GCCTAAGCAAAAAGTGTGAAGGAAT 60.510 40.000 0.00 0.00 39.53 3.01
6955 9341 4.202111 GCCTAAGCAAAAAGTGTGAAGGAA 60.202 41.667 0.00 0.00 39.53 3.36
6956 9342 3.317993 GCCTAAGCAAAAAGTGTGAAGGA 59.682 43.478 0.00 0.00 39.53 3.36
6957 9343 3.319122 AGCCTAAGCAAAAAGTGTGAAGG 59.681 43.478 0.00 0.00 43.56 3.46
6958 9344 4.293415 CAGCCTAAGCAAAAAGTGTGAAG 58.707 43.478 0.00 0.00 43.56 3.02
6959 9345 3.068024 CCAGCCTAAGCAAAAAGTGTGAA 59.932 43.478 0.00 0.00 43.56 3.18
6960 9346 2.622942 CCAGCCTAAGCAAAAAGTGTGA 59.377 45.455 0.00 0.00 43.56 3.58
6961 9347 2.288395 CCCAGCCTAAGCAAAAAGTGTG 60.288 50.000 0.00 0.00 43.56 3.82
6962 9348 1.963515 CCCAGCCTAAGCAAAAAGTGT 59.036 47.619 0.00 0.00 43.56 3.55
6963 9349 1.273327 CCCCAGCCTAAGCAAAAAGTG 59.727 52.381 0.00 0.00 43.56 3.16
6964 9350 1.632589 CCCCAGCCTAAGCAAAAAGT 58.367 50.000 0.00 0.00 43.56 2.66
6965 9351 0.897621 CCCCCAGCCTAAGCAAAAAG 59.102 55.000 0.00 0.00 43.56 2.27
6966 9352 3.065462 CCCCCAGCCTAAGCAAAAA 57.935 52.632 0.00 0.00 43.56 1.94
6967 9353 4.863415 CCCCCAGCCTAAGCAAAA 57.137 55.556 0.00 0.00 43.56 2.44
6993 9379 4.729918 CTCCTGGGGGTGCTGTGC 62.730 72.222 0.00 0.00 0.00 4.57
6994 9380 4.729918 GCTCCTGGGGGTGCTGTG 62.730 72.222 0.00 0.00 45.53 3.66
6999 9385 1.561769 TATGTGTGCTCCTGGGGGTG 61.562 60.000 0.00 0.00 0.00 4.61
7000 9386 1.229820 TATGTGTGCTCCTGGGGGT 60.230 57.895 0.00 0.00 0.00 4.95
7001 9387 1.528824 CTATGTGTGCTCCTGGGGG 59.471 63.158 0.00 0.00 0.00 5.40
7002 9388 1.153086 GCTATGTGTGCTCCTGGGG 60.153 63.158 0.00 0.00 0.00 4.96
7003 9389 1.910722 AGCTATGTGTGCTCCTGGG 59.089 57.895 0.00 0.00 35.67 4.45
7039 9550 4.942483 AGGACTCGGTCATAAGGTATATCG 59.058 45.833 6.41 0.00 33.68 2.92
7048 9559 1.405526 GCAGCAAGGACTCGGTCATAA 60.406 52.381 6.41 0.00 33.68 1.90
7055 9566 1.739562 GACCTGCAGCAAGGACTCG 60.740 63.158 8.66 0.00 40.02 4.18
7107 9618 5.252969 ACGAGTACCTGCAAATACGATAA 57.747 39.130 0.00 0.00 0.00 1.75
7163 9674 1.599518 ATGCCAGTTTGTTCGCCGA 60.600 52.632 0.00 0.00 0.00 5.54
7176 9687 3.444742 CCTCTATTTCTTTGTGCATGCCA 59.555 43.478 16.68 10.08 0.00 4.92
7221 9732 5.069119 GCTTAGGGGCAAATTATTACAGCTT 59.931 40.000 0.00 0.00 0.00 3.74
7224 9735 6.431234 CCTAGCTTAGGGGCAAATTATTACAG 59.569 42.308 0.00 0.00 42.42 2.74
7241 9752 4.020485 GGAGAGAACAAACCACCTAGCTTA 60.020 45.833 0.00 0.00 0.00 3.09
7245 9756 3.325135 ACTGGAGAGAACAAACCACCTAG 59.675 47.826 0.00 0.00 0.00 3.02
7256 9767 2.610727 GCTACACCACACTGGAGAGAAC 60.611 54.545 0.00 0.00 40.96 3.01
7258 9769 1.203063 AGCTACACCACACTGGAGAGA 60.203 52.381 0.00 0.00 40.96 3.10
7262 9773 1.344438 CTGAAGCTACACCACACTGGA 59.656 52.381 0.00 0.00 40.96 3.86
7307 9829 2.169978 CTGCCATGAGAGTTGAGATCCA 59.830 50.000 0.00 0.00 0.00 3.41
7308 9830 2.433604 TCTGCCATGAGAGTTGAGATCC 59.566 50.000 0.00 0.00 0.00 3.36
7309 9831 3.815856 TCTGCCATGAGAGTTGAGATC 57.184 47.619 0.00 0.00 0.00 2.75
7319 9841 4.760204 TCAGCATGATAATTCTGCCATGAG 59.240 41.667 0.00 0.00 42.56 2.90
7339 9861 3.113260 ACCAACTCTTTTCCTCGTCAG 57.887 47.619 0.00 0.00 0.00 3.51
7355 9877 4.774660 TCCTACAACCACAAGTAACCAA 57.225 40.909 0.00 0.00 0.00 3.67
7365 9887 3.482436 TCAACCAACATCCTACAACCAC 58.518 45.455 0.00 0.00 0.00 4.16
7368 9890 5.298276 TGAACTTCAACCAACATCCTACAAC 59.702 40.000 0.00 0.00 0.00 3.32
7381 9903 4.142622 TGAATGATCGCATGAACTTCAACC 60.143 41.667 0.00 0.00 34.26 3.77
7382 9904 4.790140 GTGAATGATCGCATGAACTTCAAC 59.210 41.667 0.00 0.00 36.07 3.18
7402 9924 4.243008 TGGGCAAACGCTCCGTGA 62.243 61.111 0.00 0.00 39.99 4.35
7422 9944 3.904136 AGAGAAAAACGGCAACTCATG 57.096 42.857 0.00 0.00 0.00 3.07
7431 9953 4.234574 GGCAAATGGTTAGAGAAAAACGG 58.765 43.478 0.00 0.00 0.00 4.44
7458 9980 2.828549 GGTGGGCCAGCATAACCG 60.829 66.667 29.78 0.00 34.09 4.44
7459 9981 2.358619 TGGTGGGCCAGCATAACC 59.641 61.111 33.11 17.62 40.46 2.85
7519 10042 2.549992 GGTTCCAATTTCACAAAGGGCC 60.550 50.000 0.00 0.00 0.00 5.80
7564 10087 4.430137 ACAATCGTCTTGCTTCTACGTA 57.570 40.909 0.00 0.00 37.83 3.57
7565 10088 3.299340 ACAATCGTCTTGCTTCTACGT 57.701 42.857 0.00 0.00 37.83 3.57
7566 10089 3.181530 CCAACAATCGTCTTGCTTCTACG 60.182 47.826 0.00 0.00 37.96 3.51
7567 10090 3.746492 ACCAACAATCGTCTTGCTTCTAC 59.254 43.478 1.28 0.00 0.00 2.59
7591 10118 4.260985 TCTGTCAAAGCAACTTCACTCAA 58.739 39.130 0.00 0.00 0.00 3.02
7595 10122 4.260948 CCTTCTCTGTCAAAGCAACTTCAC 60.261 45.833 0.00 0.00 0.00 3.18
7621 10148 3.296516 GCAACATTCAGCGCTACAC 57.703 52.632 10.99 0.00 0.00 2.90
7782 10368 1.681793 GCTGTATCTCCCTACGAAGCA 59.318 52.381 0.00 0.00 0.00 3.91
7786 10372 1.140452 ACGAGCTGTATCTCCCTACGA 59.860 52.381 0.00 0.00 0.00 3.43
7798 10384 0.317160 TCGATTTGGTCACGAGCTGT 59.683 50.000 0.00 0.00 0.00 4.40
7937 10587 0.790866 GCATGAAAACACTCGCGCTC 60.791 55.000 5.56 0.00 0.00 5.03
8018 12903 6.777580 TCCTATATCCTGCATATCGAATGCTA 59.222 38.462 23.54 13.61 44.79 3.49
8085 12973 2.821366 GGATCAGGTGCAGCCGTG 60.821 66.667 13.29 5.47 43.70 4.94
8086 12974 4.457496 CGGATCAGGTGCAGCCGT 62.457 66.667 13.29 0.00 43.70 5.68
8088 12976 4.864334 CCCGGATCAGGTGCAGCC 62.864 72.222 13.29 4.65 37.58 4.85
8089 12977 2.252072 TTACCCGGATCAGGTGCAGC 62.252 60.000 8.11 8.11 38.36 5.25
8115 13003 4.474394 TCTATGGACCGATCTGACAGATT 58.526 43.478 18.89 3.60 34.53 2.40
8132 13020 3.916172 GCATTGCCGCACAAATATCTATG 59.084 43.478 0.00 0.00 42.86 2.23
8146 13034 1.072391 TTGTACGTGTAGCATTGCCG 58.928 50.000 4.70 4.23 0.00 5.69
8147 13035 2.723618 CGTTTGTACGTGTAGCATTGCC 60.724 50.000 4.70 0.00 42.72 4.52
8148 13036 2.492001 CGTTTGTACGTGTAGCATTGC 58.508 47.619 0.00 0.00 42.72 3.56
8160 13048 6.845280 TGTAAAAGCGTGTAAATCGTTTGTAC 59.155 34.615 7.79 7.79 40.20 2.90
8161 13049 6.941802 TGTAAAAGCGTGTAAATCGTTTGTA 58.058 32.000 0.00 0.00 32.75 2.41
8162 13050 5.808403 TGTAAAAGCGTGTAAATCGTTTGT 58.192 33.333 0.00 0.00 32.75 2.83
8163 13051 5.338559 CCTGTAAAAGCGTGTAAATCGTTTG 59.661 40.000 0.00 0.00 32.75 2.93
8164 13052 5.236911 TCCTGTAAAAGCGTGTAAATCGTTT 59.763 36.000 0.00 0.00 33.68 3.60
8165 13053 4.751098 TCCTGTAAAAGCGTGTAAATCGTT 59.249 37.500 0.00 0.00 0.00 3.85
8166 13054 4.309099 TCCTGTAAAAGCGTGTAAATCGT 58.691 39.130 0.00 0.00 0.00 3.73
8167 13055 4.914312 TCCTGTAAAAGCGTGTAAATCG 57.086 40.909 0.00 0.00 0.00 3.34
8168 13056 5.123344 ACCATCCTGTAAAAGCGTGTAAATC 59.877 40.000 0.00 0.00 0.00 2.17
8169 13057 5.007682 ACCATCCTGTAAAAGCGTGTAAAT 58.992 37.500 0.00 0.00 0.00 1.40
8170 13058 4.391155 ACCATCCTGTAAAAGCGTGTAAA 58.609 39.130 0.00 0.00 0.00 2.01
8171 13059 4.010667 ACCATCCTGTAAAAGCGTGTAA 57.989 40.909 0.00 0.00 0.00 2.41
8172 13060 3.688694 ACCATCCTGTAAAAGCGTGTA 57.311 42.857 0.00 0.00 0.00 2.90
8173 13061 2.561478 ACCATCCTGTAAAAGCGTGT 57.439 45.000 0.00 0.00 0.00 4.49
8174 13062 4.454504 AGTTAACCATCCTGTAAAAGCGTG 59.545 41.667 0.88 0.00 0.00 5.34
8175 13063 4.648651 AGTTAACCATCCTGTAAAAGCGT 58.351 39.130 0.88 0.00 0.00 5.07
8176 13064 5.622770 AAGTTAACCATCCTGTAAAAGCG 57.377 39.130 0.88 0.00 0.00 4.68
8177 13065 6.977213 TCAAAGTTAACCATCCTGTAAAAGC 58.023 36.000 0.88 0.00 0.00 3.51
8178 13066 9.410556 CAATCAAAGTTAACCATCCTGTAAAAG 57.589 33.333 0.88 0.00 0.00 2.27
8179 13067 8.364142 CCAATCAAAGTTAACCATCCTGTAAAA 58.636 33.333 0.88 0.00 0.00 1.52
8180 13068 7.507616 ACCAATCAAAGTTAACCATCCTGTAAA 59.492 33.333 0.88 0.00 0.00 2.01
8181 13069 7.007723 ACCAATCAAAGTTAACCATCCTGTAA 58.992 34.615 0.88 0.00 0.00 2.41
8182 13070 6.548321 ACCAATCAAAGTTAACCATCCTGTA 58.452 36.000 0.88 0.00 0.00 2.74
8183 13071 5.393866 ACCAATCAAAGTTAACCATCCTGT 58.606 37.500 0.88 0.00 0.00 4.00
8184 13072 5.476599 TGACCAATCAAAGTTAACCATCCTG 59.523 40.000 0.88 0.00 0.00 3.86
8185 13073 5.640147 TGACCAATCAAAGTTAACCATCCT 58.360 37.500 0.88 0.00 0.00 3.24
8186 13074 5.975693 TGACCAATCAAAGTTAACCATCC 57.024 39.130 0.88 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.