Multiple sequence alignment - TraesCS5B01G194800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G194800 chr5B 100.000 5424 0 0 1 5424 351699860 351705283 0.000000e+00 10017.0
1 TraesCS5B01G194800 chr5D 94.752 5202 166 31 3 5178 306564392 306569512 0.000000e+00 7995.0
2 TraesCS5B01G194800 chr5D 82.192 219 25 9 5210 5423 306569514 306569723 5.580000e-40 176.0
3 TraesCS5B01G194800 chr5A 93.903 3723 112 38 132 3807 390735395 390731741 0.000000e+00 5511.0
4 TraesCS5B01G194800 chr5A 95.936 1255 33 4 3926 5178 390731402 390730164 0.000000e+00 2019.0
5 TraesCS5B01G194800 chr5A 87.270 707 54 14 1 697 390749125 390748445 0.000000e+00 774.0
6 TraesCS5B01G194800 chr5A 94.643 168 9 0 3 170 390735561 390735394 1.500000e-65 261.0
7 TraesCS5B01G194800 chr5A 82.727 220 25 10 5210 5423 390730162 390729950 3.340000e-42 183.0
8 TraesCS5B01G194800 chr6D 97.674 43 1 0 5169 5211 305130334 305130376 2.100000e-09 75.0
9 TraesCS5B01G194800 chr4B 94.000 50 2 1 5163 5211 610072643 610072594 2.100000e-09 75.0
10 TraesCS5B01G194800 chr4B 91.837 49 3 1 5163 5211 387504817 387504770 3.510000e-07 67.6
11 TraesCS5B01G194800 chr6B 95.556 45 2 0 5167 5211 505294743 505294787 7.540000e-09 73.1
12 TraesCS5B01G194800 chr6B 92.000 50 4 0 5162 5211 369835166 369835117 2.710000e-08 71.3
13 TraesCS5B01G194800 chr6A 95.556 45 2 0 5167 5211 8513000 8512956 7.540000e-09 73.1
14 TraesCS5B01G194800 chr3B 93.617 47 3 0 5164 5210 37252900 37252946 2.710000e-08 71.3
15 TraesCS5B01G194800 chr3D 90.000 50 5 0 5172 5221 291169026 291169075 1.260000e-06 65.8
16 TraesCS5B01G194800 chr1D 87.500 56 7 0 5155 5210 426578080 426578135 1.260000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G194800 chr5B 351699860 351705283 5423 False 10017.0 10017 100.00000 1 5424 1 chr5B.!!$F1 5423
1 TraesCS5B01G194800 chr5D 306564392 306569723 5331 False 4085.5 7995 88.47200 3 5423 2 chr5D.!!$F1 5420
2 TraesCS5B01G194800 chr5A 390729950 390735561 5611 True 1993.5 5511 91.80225 3 5423 4 chr5A.!!$R2 5420
3 TraesCS5B01G194800 chr5A 390748445 390749125 680 True 774.0 774 87.27000 1 697 1 chr5A.!!$R1 696

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
501 547 1.389106 GCGACGAGAATTAAACAGCGT 59.611 47.619 0.00 0.0 34.39 5.07 F
1713 1772 1.310018 CGATCGTCGCTAGAATCACG 58.690 55.000 7.03 0.0 31.14 4.35 F
1785 1844 0.250727 CACTCGCCTTTCCCCTTTGA 60.251 55.000 0.00 0.0 0.00 2.69 F
1808 1869 1.140052 TGTTGTTTCTCTCCTTGCCGA 59.860 47.619 0.00 0.0 0.00 5.54 F
1949 2010 2.040544 GCCATGGGTGACTCCGTTG 61.041 63.158 15.13 0.0 37.00 4.10 F
3214 3302 2.109128 TGTTTTCCTCCTATTGTGGCCA 59.891 45.455 0.00 0.0 0.00 5.36 F
3819 3912 1.576356 TGAAACAAAATTGCGGTGGC 58.424 45.000 0.00 0.0 40.52 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1733 1792 0.877071 CCTCGCAGCACAAATCTTGT 59.123 50.000 0.00 0.0 46.75 3.16 R
2839 2923 1.541379 ACGAAAATGGCCACCTAACC 58.459 50.000 8.16 0.0 0.00 2.85 R
3193 3281 2.109128 TGGCCACAATAGGAGGAAAACA 59.891 45.455 0.00 0.0 0.00 2.83 R
3194 3282 2.802719 TGGCCACAATAGGAGGAAAAC 58.197 47.619 0.00 0.0 0.00 2.43 R
3216 3304 3.207321 TGGGGCATGGAAATAAGAGGAAT 59.793 43.478 0.00 0.0 0.00 3.01 R
4201 4514 0.036732 TGCAGGTTGTAAGGGCTCTG 59.963 55.000 0.00 0.0 0.00 3.35 R
5049 5364 2.512896 ACTTCCCTGATCTTGATGCCAT 59.487 45.455 0.00 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.246203 TCTTGCACACATTCCTTAGTAGTCT 59.754 40.000 0.00 0.00 0.00 3.24
74 75 6.403200 GCAATATTTGTGACATGTTACCGTCT 60.403 38.462 17.24 3.49 33.18 4.18
130 131 2.555325 CACATGTGTCATGCCAAGTCTT 59.445 45.455 18.03 0.00 0.00 3.01
141 142 1.522668 CCAAGTCTTTCGTGCCATGA 58.477 50.000 0.00 0.00 0.00 3.07
180 218 1.623311 TGAACGAGTCACCATCACCAT 59.377 47.619 0.00 0.00 0.00 3.55
188 226 5.815222 CGAGTCACCATCACCATATTTAACA 59.185 40.000 0.00 0.00 0.00 2.41
367 406 6.400579 AATAATCAGCATATCTTCGCTTCG 57.599 37.500 0.00 0.00 35.96 3.79
501 547 1.389106 GCGACGAGAATTAAACAGCGT 59.611 47.619 0.00 0.00 34.39 5.07
502 548 2.595536 GCGACGAGAATTAAACAGCGTA 59.404 45.455 0.00 0.00 31.58 4.42
503 549 3.301007 GCGACGAGAATTAAACAGCGTAG 60.301 47.826 0.00 0.00 31.58 3.51
522 568 2.437897 AGGTTTGCCTGGCAGGAG 59.562 61.111 37.07 12.28 45.05 3.69
523 569 3.376918 GGTTTGCCTGGCAGGAGC 61.377 66.667 37.07 22.23 40.61 4.70
524 570 2.598394 GTTTGCCTGGCAGGAGCA 60.598 61.111 37.07 24.64 44.61 4.26
549 595 7.520451 GGTCTAAACCTTAAACCTGATTTGT 57.480 36.000 0.00 0.00 42.80 2.83
550 596 8.625786 GGTCTAAACCTTAAACCTGATTTGTA 57.374 34.615 0.00 0.00 42.80 2.41
551 597 9.070179 GGTCTAAACCTTAAACCTGATTTGTAA 57.930 33.333 0.00 0.00 42.80 2.41
552 598 9.888878 GTCTAAACCTTAAACCTGATTTGTAAC 57.111 33.333 0.00 0.00 0.00 2.50
574 629 7.898014 AACTAACAGAAAAGAAAAGACCCAT 57.102 32.000 0.00 0.00 0.00 4.00
593 650 5.484998 ACCCATCAAATCTTACCAGCAAAAT 59.515 36.000 0.00 0.00 0.00 1.82
630 688 2.098298 CGCACGCCCGAAATCTTG 59.902 61.111 0.00 0.00 0.00 3.02
880 938 5.414789 AAACAATCCCGGGGAATAAAAAG 57.585 39.130 23.50 1.55 34.34 2.27
1071 1130 2.438614 TCCGAGGAGGACGAGCTG 60.439 66.667 0.00 0.00 45.98 4.24
1207 1266 2.656069 GCGGTTCCTGAGCACCCTA 61.656 63.158 0.00 0.00 0.00 3.53
1540 1599 3.951332 TCGCCAAGAACGAGCAAG 58.049 55.556 0.00 0.00 33.96 4.01
1678 1737 3.630013 TCCTCAGCCGCTGCAACT 61.630 61.111 15.98 0.00 41.13 3.16
1713 1772 1.310018 CGATCGTCGCTAGAATCACG 58.690 55.000 7.03 0.00 31.14 4.35
1733 1792 2.798283 CGCGAGACCACAAGAAGTTTTA 59.202 45.455 0.00 0.00 0.00 1.52
1773 1832 2.349817 GCATGTGCATATAACACTCGCC 60.350 50.000 0.00 0.00 41.59 5.54
1785 1844 0.250727 CACTCGCCTTTCCCCTTTGA 60.251 55.000 0.00 0.00 0.00 2.69
1798 1859 3.951680 TCCCCTTTGACTTGTTGTTTCTC 59.048 43.478 0.00 0.00 0.00 2.87
1799 1860 3.954258 CCCCTTTGACTTGTTGTTTCTCT 59.046 43.478 0.00 0.00 0.00 3.10
1800 1861 4.036852 CCCCTTTGACTTGTTGTTTCTCTC 59.963 45.833 0.00 0.00 0.00 3.20
1808 1869 1.140052 TGTTGTTTCTCTCCTTGCCGA 59.860 47.619 0.00 0.00 0.00 5.54
1900 1961 4.263018 TCAATTCCTGCATATCCGAGAG 57.737 45.455 0.00 0.00 0.00 3.20
1949 2010 2.040544 GCCATGGGTGACTCCGTTG 61.041 63.158 15.13 0.00 37.00 4.10
2042 2103 5.897250 TCATCCATACTTTGCTGAGGTACTA 59.103 40.000 0.00 0.00 41.55 1.82
2055 2116 8.034313 TGCTGAGGTACTATGAATTTATTCCT 57.966 34.615 0.00 0.00 41.55 3.36
2083 2144 3.738282 CAGATTCTAACTGGCGCAGATAC 59.262 47.826 10.83 0.43 35.18 2.24
2238 2317 3.737559 ACCAATGTGTGTATCCACCAT 57.262 42.857 0.00 0.00 41.09 3.55
2571 2655 2.816087 TCTCTTGATCACCTTGCTTTGC 59.184 45.455 0.00 0.00 0.00 3.68
2575 2659 4.216257 TCTTGATCACCTTGCTTTGCTAAC 59.784 41.667 0.00 0.00 0.00 2.34
2672 2756 8.934023 ATCTTGAAAGGTTAAAATGAGTACCA 57.066 30.769 0.00 0.00 33.02 3.25
2792 2876 2.692041 GGCCATGAGAAGCAGCTTTTAT 59.308 45.455 9.62 1.63 0.00 1.40
2805 2889 6.928520 AGCAGCTTTTATTACAGCAAGATTT 58.071 32.000 0.00 0.00 38.61 2.17
2806 2890 6.810182 AGCAGCTTTTATTACAGCAAGATTTG 59.190 34.615 0.00 0.00 38.61 2.32
2840 2924 9.071276 ACAAATACATATCTTTGATAGGCAAGG 57.929 33.333 8.27 0.00 37.87 3.61
2924 3008 3.516300 TCACGTACATAGGTCCCATGTTT 59.484 43.478 8.31 0.00 37.74 2.83
2951 3035 4.518970 TCAAAGTGATAAAGTGGTTCCAGC 59.481 41.667 0.00 0.00 0.00 4.85
2970 3054 2.578021 AGCCAAGGTGTCTGGACATTAT 59.422 45.455 6.71 0.00 43.97 1.28
3047 3131 4.157656 TGTTTTGCTGAACAGTTGCTTACT 59.842 37.500 0.00 0.00 34.77 2.24
3098 3186 8.575565 TCATTGACGCTATATCTTACAGTTTC 57.424 34.615 0.00 0.00 0.00 2.78
3192 3280 7.654520 TCGTGCTTACTTTCAGTTTATGTTACT 59.345 33.333 0.00 0.00 0.00 2.24
3193 3281 8.280497 CGTGCTTACTTTCAGTTTATGTTACTT 58.720 33.333 0.00 0.00 0.00 2.24
3194 3282 9.382244 GTGCTTACTTTCAGTTTATGTTACTTG 57.618 33.333 0.00 0.00 0.00 3.16
3195 3283 9.116067 TGCTTACTTTCAGTTTATGTTACTTGT 57.884 29.630 0.00 0.00 0.00 3.16
3196 3284 9.946165 GCTTACTTTCAGTTTATGTTACTTGTT 57.054 29.630 0.00 0.00 0.00 2.83
3200 3288 9.797556 ACTTTCAGTTTATGTTACTTGTTTTCC 57.202 29.630 0.00 0.00 0.00 3.13
3203 3291 8.161699 TCAGTTTATGTTACTTGTTTTCCTCC 57.838 34.615 0.00 0.00 0.00 4.30
3204 3292 7.996644 TCAGTTTATGTTACTTGTTTTCCTCCT 59.003 33.333 0.00 0.00 0.00 3.69
3205 3293 9.280174 CAGTTTATGTTACTTGTTTTCCTCCTA 57.720 33.333 0.00 0.00 0.00 2.94
3209 3297 9.802039 TTATGTTACTTGTTTTCCTCCTATTGT 57.198 29.630 0.00 0.00 0.00 2.71
3210 3298 7.504924 TGTTACTTGTTTTCCTCCTATTGTG 57.495 36.000 0.00 0.00 0.00 3.33
3211 3299 6.488683 TGTTACTTGTTTTCCTCCTATTGTGG 59.511 38.462 0.00 0.00 0.00 4.17
3212 3300 3.826729 ACTTGTTTTCCTCCTATTGTGGC 59.173 43.478 0.00 0.00 0.00 5.01
3213 3301 2.802719 TGTTTTCCTCCTATTGTGGCC 58.197 47.619 0.00 0.00 0.00 5.36
3214 3302 2.109128 TGTTTTCCTCCTATTGTGGCCA 59.891 45.455 0.00 0.00 0.00 5.36
3215 3303 3.245586 TGTTTTCCTCCTATTGTGGCCAT 60.246 43.478 9.72 0.00 0.00 4.40
3216 3304 4.017958 TGTTTTCCTCCTATTGTGGCCATA 60.018 41.667 9.72 1.91 0.00 2.74
3479 3567 8.663167 TGATGATAATCCTACTGACCATCATTT 58.337 33.333 0.00 0.00 37.36 2.32
3503 3591 4.669206 TTCCATGCAAACACATCAAACT 57.331 36.364 0.00 0.00 0.00 2.66
3596 3689 6.262049 TCAAGCTTAGCTCAATTTGTGTGTTA 59.738 34.615 7.36 0.00 38.25 2.41
3601 3694 8.397906 GCTTAGCTCAATTTGTGTGTTATCATA 58.602 33.333 0.00 0.00 0.00 2.15
3792 3885 4.275936 GCAGTACTGTTGTTCTTTGATGGT 59.724 41.667 23.44 0.00 0.00 3.55
3816 3909 7.491048 GGTCATTATATGAAACAAAATTGCGGT 59.509 33.333 0.00 0.00 41.69 5.68
3819 3912 1.576356 TGAAACAAAATTGCGGTGGC 58.424 45.000 0.00 0.00 40.52 5.01
3828 3922 3.940209 AATTGCGGTGGCCATTATATG 57.060 42.857 9.72 0.00 38.85 1.78
3982 4295 8.375506 TCTTCCAGAAACTACATTGTTCAGTAT 58.624 33.333 0.00 0.00 0.00 2.12
4107 4420 6.870971 TGAAACGTGCCTAGAAGTTTTTAT 57.129 33.333 0.00 0.00 37.00 1.40
4198 4511 9.399797 TCAGATGAGTTTGCTAATTATGTCATT 57.600 29.630 0.00 0.00 0.00 2.57
4201 4514 9.455847 GATGAGTTTGCTAATTATGTCATTTCC 57.544 33.333 0.00 0.00 0.00 3.13
4246 4559 0.464373 TCTGCCTCGGCCATGATTTC 60.464 55.000 2.24 0.00 41.09 2.17
4279 4593 8.715191 AGTATATTTTCAGCTCAGAAACAGAG 57.285 34.615 0.00 0.00 37.24 3.35
4567 4882 7.962441 TGTATATTATAAGCAGTTCTGGCTGA 58.038 34.615 1.97 0.00 41.66 4.26
4833 5148 7.759433 CCTGTTGTTAAAAAGAGTGAACAATGT 59.241 33.333 2.13 0.00 42.11 2.71
4875 5190 6.401796 GGTGGTTGTGCTACTAGTTTTTATCG 60.402 42.308 0.00 0.00 0.00 2.92
4925 5240 4.613925 TTGGCAAAGCATATTCAACCAA 57.386 36.364 0.00 0.00 33.72 3.67
4926 5241 4.613925 TGGCAAAGCATATTCAACCAAA 57.386 36.364 0.00 0.00 0.00 3.28
4927 5242 4.567971 TGGCAAAGCATATTCAACCAAAG 58.432 39.130 0.00 0.00 0.00 2.77
4928 5243 3.371898 GGCAAAGCATATTCAACCAAAGC 59.628 43.478 0.00 0.00 0.00 3.51
4929 5244 4.248058 GCAAAGCATATTCAACCAAAGCT 58.752 39.130 0.00 0.00 0.00 3.74
4930 5245 5.410067 GCAAAGCATATTCAACCAAAGCTA 58.590 37.500 0.00 0.00 0.00 3.32
4931 5246 5.517770 GCAAAGCATATTCAACCAAAGCTAG 59.482 40.000 0.00 0.00 0.00 3.42
4932 5247 6.625740 GCAAAGCATATTCAACCAAAGCTAGA 60.626 38.462 0.00 0.00 0.00 2.43
4933 5248 6.690194 AAGCATATTCAACCAAAGCTAGAG 57.310 37.500 0.00 0.00 0.00 2.43
4934 5249 4.578105 AGCATATTCAACCAAAGCTAGAGC 59.422 41.667 0.00 0.00 42.49 4.09
5013 5328 7.769272 TCTTCCTTGTTTTTATGCAAACTTG 57.231 32.000 0.00 0.00 37.51 3.16
5016 5331 9.092876 CTTCCTTGTTTTTATGCAAACTTGTAA 57.907 29.630 0.00 0.00 37.51 2.41
5063 5378 4.224991 TGAGTCAATGGCATCAAGATCA 57.775 40.909 0.00 0.00 0.00 2.92
5109 5424 8.020861 TCACTAAATTTACACGGTGTTCATAC 57.979 34.615 20.15 0.00 0.00 2.39
5167 5482 9.036980 AGAGTATTTATTCCTACATCGCCTATT 57.963 33.333 0.00 0.00 0.00 1.73
5178 5493 8.867097 TCCTACATCGCCTATTTATTTTCTACT 58.133 33.333 0.00 0.00 0.00 2.57
5179 5494 9.141400 CCTACATCGCCTATTTATTTTCTACTC 57.859 37.037 0.00 0.00 0.00 2.59
5180 5495 7.964604 ACATCGCCTATTTATTTTCTACTCC 57.035 36.000 0.00 0.00 0.00 3.85
5181 5496 6.935208 ACATCGCCTATTTATTTTCTACTCCC 59.065 38.462 0.00 0.00 0.00 4.30
5182 5497 6.742559 TCGCCTATTTATTTTCTACTCCCT 57.257 37.500 0.00 0.00 0.00 4.20
5183 5498 6.756221 TCGCCTATTTATTTTCTACTCCCTC 58.244 40.000 0.00 0.00 0.00 4.30
5184 5499 5.932883 CGCCTATTTATTTTCTACTCCCTCC 59.067 44.000 0.00 0.00 0.00 4.30
5185 5500 5.932883 GCCTATTTATTTTCTACTCCCTCCG 59.067 44.000 0.00 0.00 0.00 4.63
5186 5501 6.464039 GCCTATTTATTTTCTACTCCCTCCGT 60.464 42.308 0.00 0.00 0.00 4.69
5187 5502 7.506971 CCTATTTATTTTCTACTCCCTCCGTT 58.493 38.462 0.00 0.00 0.00 4.44
5188 5503 7.656542 CCTATTTATTTTCTACTCCCTCCGTTC 59.343 40.741 0.00 0.00 0.00 3.95
5189 5504 3.908643 ATTTTCTACTCCCTCCGTTCC 57.091 47.619 0.00 0.00 0.00 3.62
5190 5505 2.314071 TTTCTACTCCCTCCGTTCCA 57.686 50.000 0.00 0.00 0.00 3.53
5191 5506 2.314071 TTCTACTCCCTCCGTTCCAA 57.686 50.000 0.00 0.00 0.00 3.53
5192 5507 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
5193 5508 2.612000 TCTACTCCCTCCGTTCCAAAA 58.388 47.619 0.00 0.00 0.00 2.44
5194 5509 3.178865 TCTACTCCCTCCGTTCCAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
5195 5510 4.355549 TCTACTCCCTCCGTTCCAAAATA 58.644 43.478 0.00 0.00 0.00 1.40
5196 5511 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
5197 5512 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
5198 5513 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
5199 5514 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
5200 5515 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
5201 5516 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
5202 5517 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
5203 5518 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
5204 5519 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
5205 5520 3.627577 CCGTTCCAAAATAGATGACCCAG 59.372 47.826 0.00 0.00 0.00 4.45
5206 5521 3.065371 CGTTCCAAAATAGATGACCCAGC 59.935 47.826 0.00 0.00 0.00 4.85
5207 5522 4.273318 GTTCCAAAATAGATGACCCAGCT 58.727 43.478 0.00 0.00 33.54 4.24
5208 5523 4.591321 TCCAAAATAGATGACCCAGCTT 57.409 40.909 0.00 0.00 30.76 3.74
5215 5530 3.795688 AGATGACCCAGCTTTGAGAAA 57.204 42.857 0.00 0.00 0.00 2.52
5280 5595 8.585471 ACACCATTGATTGATTTCTAACATCT 57.415 30.769 0.00 0.00 0.00 2.90
5281 5596 9.685276 ACACCATTGATTGATTTCTAACATCTA 57.315 29.630 0.00 0.00 0.00 1.98
5315 5630 5.139727 TCAAACTTCTTGTTGGGATGATGT 58.860 37.500 0.00 0.00 39.13 3.06
5316 5631 5.009911 TCAAACTTCTTGTTGGGATGATGTG 59.990 40.000 0.00 0.00 39.13 3.21
5317 5632 2.821969 ACTTCTTGTTGGGATGATGTGC 59.178 45.455 0.00 0.00 0.00 4.57
5318 5633 2.885135 TCTTGTTGGGATGATGTGCT 57.115 45.000 0.00 0.00 0.00 4.40
5319 5634 3.159213 TCTTGTTGGGATGATGTGCTT 57.841 42.857 0.00 0.00 0.00 3.91
5320 5635 2.821378 TCTTGTTGGGATGATGTGCTTG 59.179 45.455 0.00 0.00 0.00 4.01
5321 5636 1.548081 TGTTGGGATGATGTGCTTGG 58.452 50.000 0.00 0.00 0.00 3.61
5322 5637 1.203038 TGTTGGGATGATGTGCTTGGT 60.203 47.619 0.00 0.00 0.00 3.67
5323 5638 1.895131 GTTGGGATGATGTGCTTGGTT 59.105 47.619 0.00 0.00 0.00 3.67
5324 5639 2.299867 GTTGGGATGATGTGCTTGGTTT 59.700 45.455 0.00 0.00 0.00 3.27
5325 5640 2.170166 TGGGATGATGTGCTTGGTTTC 58.830 47.619 0.00 0.00 0.00 2.78
5326 5641 2.225091 TGGGATGATGTGCTTGGTTTCT 60.225 45.455 0.00 0.00 0.00 2.52
5327 5642 3.010027 TGGGATGATGTGCTTGGTTTCTA 59.990 43.478 0.00 0.00 0.00 2.10
5329 5644 4.009675 GGATGATGTGCTTGGTTTCTACA 58.990 43.478 0.00 0.00 0.00 2.74
5346 5680 7.824779 GGTTTCTACAATTCTAGTGAGTGGAAT 59.175 37.037 0.00 0.00 37.96 3.01
5347 5681 8.874816 GTTTCTACAATTCTAGTGAGTGGAATC 58.125 37.037 0.00 0.00 35.39 2.52
5351 5685 9.689976 CTACAATTCTAGTGAGTGGAATCTATG 57.310 37.037 0.00 0.00 35.39 2.23
5353 5687 8.932610 ACAATTCTAGTGAGTGGAATCTATGAT 58.067 33.333 0.00 0.00 35.39 2.45
5357 5691 8.996651 TCTAGTGAGTGGAATCTATGATAACA 57.003 34.615 0.00 0.00 0.00 2.41
5358 5692 9.421399 TCTAGTGAGTGGAATCTATGATAACAA 57.579 33.333 0.00 0.00 0.00 2.83
5361 5695 9.911788 AGTGAGTGGAATCTATGATAACAAAAT 57.088 29.630 0.00 0.00 0.00 1.82
5388 5722 7.701539 TGTCAAATATTATCCTGCAGTTTGT 57.298 32.000 13.81 0.00 0.00 2.83
5419 5753 6.590068 ACATAGGAGTTCCAATCTGATTCAG 58.410 40.000 7.38 7.38 38.89 3.02
5423 5757 7.443302 AGGAGTTCCAATCTGATTCAGAATA 57.557 36.000 19.73 3.90 40.36 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 5.246203 TGTTGCTCAGACTACTAAGGAATGT 59.754 40.000 0.00 0.00 0.00 2.71
74 75 2.622942 GTCAACCCTGCACATCTTTCAA 59.377 45.455 0.00 0.00 0.00 2.69
130 131 0.676466 GGGATGTGTCATGGCACGAA 60.676 55.000 24.44 9.45 41.94 3.85
141 142 5.181245 CGTTCACATTTTCTAAGGGATGTGT 59.819 40.000 13.14 0.00 45.81 3.72
173 211 8.698210 ACAATCATTGCTGTTAAATATGGTGAT 58.302 29.630 0.00 0.00 0.00 3.06
188 226 5.125417 ACGGCATTTAACTACAATCATTGCT 59.875 36.000 0.00 0.00 0.00 3.91
315 354 4.321156 CGTGCTTGGATTTTTGGAGATTGA 60.321 41.667 0.00 0.00 0.00 2.57
506 552 3.376918 GCTCCTGCCAGGCAAACC 61.377 66.667 17.03 0.20 38.41 3.27
507 553 2.598394 TGCTCCTGCCAGGCAAAC 60.598 61.111 17.03 5.65 38.41 2.93
508 554 2.282674 CTGCTCCTGCCAGGCAAA 60.283 61.111 17.03 5.76 38.41 3.68
509 555 4.355720 CCTGCTCCTGCCAGGCAA 62.356 66.667 17.03 0.00 38.41 4.52
511 557 4.792804 GACCTGCTCCTGCCAGGC 62.793 72.222 5.66 3.66 39.46 4.85
512 558 1.267574 TTAGACCTGCTCCTGCCAGG 61.268 60.000 3.69 3.69 40.69 4.45
513 559 0.615331 TTTAGACCTGCTCCTGCCAG 59.385 55.000 0.00 0.00 38.71 4.85
514 560 0.324943 GTTTAGACCTGCTCCTGCCA 59.675 55.000 0.00 0.00 38.71 4.92
515 561 0.393132 GGTTTAGACCTGCTCCTGCC 60.393 60.000 0.00 0.00 42.99 4.85
516 562 3.160872 GGTTTAGACCTGCTCCTGC 57.839 57.895 0.00 0.00 42.99 4.85
547 593 7.830201 TGGGTCTTTTCTTTTCTGTTAGTTACA 59.170 33.333 0.00 0.00 34.95 2.41
548 594 8.217131 TGGGTCTTTTCTTTTCTGTTAGTTAC 57.783 34.615 0.00 0.00 0.00 2.50
549 595 8.990163 ATGGGTCTTTTCTTTTCTGTTAGTTA 57.010 30.769 0.00 0.00 0.00 2.24
550 596 7.559897 TGATGGGTCTTTTCTTTTCTGTTAGTT 59.440 33.333 0.00 0.00 0.00 2.24
551 597 7.060421 TGATGGGTCTTTTCTTTTCTGTTAGT 58.940 34.615 0.00 0.00 0.00 2.24
552 598 7.510549 TGATGGGTCTTTTCTTTTCTGTTAG 57.489 36.000 0.00 0.00 0.00 2.34
574 629 7.531857 TGGTTATTTTGCTGGTAAGATTTGA 57.468 32.000 0.00 0.00 0.00 2.69
593 650 2.313427 GGGAGGGTGGCCATGGTTA 61.313 63.158 9.72 0.00 0.00 2.85
669 727 4.436998 CCTCGTGGACGTGGGAGC 62.437 72.222 11.57 0.00 45.95 4.70
691 749 2.749865 CGCGGGGTGCTTACATGTG 61.750 63.158 9.11 0.00 43.27 3.21
880 938 7.331934 GCCTTCCTTTAATTTCACAGGAATTTC 59.668 37.037 4.85 0.00 43.12 2.17
1120 1179 4.101448 CTGGGCCTCAACCTCGGG 62.101 72.222 4.53 0.00 0.00 5.14
1182 1241 2.602267 TCAGGAACCGCCGGAAGA 60.602 61.111 11.71 0.00 43.43 2.87
1339 1398 1.359459 GGGAAGTGCCATTCGTCGAC 61.359 60.000 5.18 5.18 38.95 4.20
1391 1450 2.742372 CGCGGAAGTTCTGGTGGG 60.742 66.667 13.59 1.55 0.00 4.61
1494 1553 1.520342 GATGTCCTCGACCAGCTGC 60.520 63.158 8.66 0.00 0.00 5.25
1540 1599 2.177531 CAGCATGTTGAGCACCGC 59.822 61.111 2.97 0.00 0.00 5.68
1593 1652 1.521681 GTGCTGGACTATCACCGCC 60.522 63.158 0.00 0.00 0.00 6.13
1678 1737 2.164422 CGATCGCTTCCTGGAGCATATA 59.836 50.000 0.26 2.30 42.83 0.86
1713 1772 3.558418 TGTAAAACTTCTTGTGGTCTCGC 59.442 43.478 0.00 0.00 0.00 5.03
1733 1792 0.877071 CCTCGCAGCACAAATCTTGT 59.123 50.000 0.00 0.00 46.75 3.16
1773 1832 4.736126 AACAACAAGTCAAAGGGGAAAG 57.264 40.909 0.00 0.00 0.00 2.62
1785 1844 2.952310 GGCAAGGAGAGAAACAACAAGT 59.048 45.455 0.00 0.00 0.00 3.16
1798 1859 2.817423 GCAGCGAATCGGCAAGGAG 61.817 63.158 4.35 0.00 35.87 3.69
1799 1860 2.819595 GCAGCGAATCGGCAAGGA 60.820 61.111 4.35 0.00 35.87 3.36
1800 1861 3.104602 CTGCAGCGAATCGGCAAGG 62.105 63.158 0.00 0.00 44.89 3.61
1808 1869 2.988010 TAACATCCTCTGCAGCGAAT 57.012 45.000 9.47 0.00 0.00 3.34
1849 1910 1.142870 CCACCTCACCTGACCTGAAAA 59.857 52.381 0.00 0.00 0.00 2.29
1900 1961 3.023119 TCTCTCAGAAGCTCCAGTGATC 58.977 50.000 0.00 0.00 0.00 2.92
1949 2010 1.599542 GTTACAAGGCGAGCCATCATC 59.400 52.381 17.18 0.00 38.92 2.92
2042 2103 8.454494 AGAATCTGGATGGAGGAATAAATTCAT 58.546 33.333 5.15 0.00 38.53 2.57
2083 2144 7.988737 ACACAATAATCACACATTGGTATCTG 58.011 34.615 0.00 0.00 36.63 2.90
2571 2655 5.595133 TGTGGGTTAGTTTTTCCTTGGTTAG 59.405 40.000 0.00 0.00 0.00 2.34
2575 2659 4.586841 TCATGTGGGTTAGTTTTTCCTTGG 59.413 41.667 0.00 0.00 0.00 3.61
2648 2732 8.934023 ATGGTACTCATTTTAACCTTTCAAGA 57.066 30.769 0.00 0.00 30.55 3.02
2663 2747 8.893727 GCTTAGTCATTGTTTTATGGTACTCAT 58.106 33.333 0.00 0.00 39.78 2.90
2792 2876 6.007076 TGTATTGGTCCAAATCTTGCTGTAA 58.993 36.000 8.75 0.00 0.00 2.41
2805 2889 9.913310 TCAAAGATATGTATTTGTATTGGTCCA 57.087 29.630 9.05 0.00 37.69 4.02
2836 2920 2.094752 CGAAAATGGCCACCTAACCTTG 60.095 50.000 8.16 0.00 0.00 3.61
2839 2923 1.541379 ACGAAAATGGCCACCTAACC 58.459 50.000 8.16 0.00 0.00 2.85
2840 2924 3.653539 AAACGAAAATGGCCACCTAAC 57.346 42.857 8.16 0.00 0.00 2.34
2924 3008 8.698973 TGGAACCACTTTATCACTTTGAAATA 57.301 30.769 0.00 0.00 0.00 1.40
2951 3035 5.982890 AAAATAATGTCCAGACACCTTGG 57.017 39.130 1.88 0.00 45.05 3.61
2998 3082 5.041287 TCGACAACATTCATCCGAACTATC 58.959 41.667 0.00 0.00 32.81 2.08
3002 3086 3.370978 ACATCGACAACATTCATCCGAAC 59.629 43.478 0.00 0.00 32.81 3.95
3014 3098 3.332761 TCAGCAAAACACATCGACAAC 57.667 42.857 0.00 0.00 0.00 3.32
3098 3186 8.858186 CGCAATAACATATGAGAGATGACTTAG 58.142 37.037 10.38 0.00 0.00 2.18
3192 3280 3.161866 GGCCACAATAGGAGGAAAACAA 58.838 45.455 0.00 0.00 0.00 2.83
3193 3281 2.109128 TGGCCACAATAGGAGGAAAACA 59.891 45.455 0.00 0.00 0.00 2.83
3194 3282 2.802719 TGGCCACAATAGGAGGAAAAC 58.197 47.619 0.00 0.00 0.00 2.43
3195 3283 3.756082 ATGGCCACAATAGGAGGAAAA 57.244 42.857 8.16 0.00 0.00 2.29
3196 3284 5.385198 GAATATGGCCACAATAGGAGGAAA 58.615 41.667 8.16 0.00 0.00 3.13
3197 3285 4.202567 GGAATATGGCCACAATAGGAGGAA 60.203 45.833 8.16 0.00 0.00 3.36
3198 3286 3.330701 GGAATATGGCCACAATAGGAGGA 59.669 47.826 8.16 0.00 0.00 3.71
3199 3287 3.331889 AGGAATATGGCCACAATAGGAGG 59.668 47.826 8.16 0.00 0.00 4.30
3200 3288 4.288105 AGAGGAATATGGCCACAATAGGAG 59.712 45.833 8.16 0.00 0.00 3.69
3201 3289 4.242811 AGAGGAATATGGCCACAATAGGA 58.757 43.478 8.16 0.00 0.00 2.94
3202 3290 4.647564 AGAGGAATATGGCCACAATAGG 57.352 45.455 8.16 0.00 0.00 2.57
3203 3291 8.641498 AAATAAGAGGAATATGGCCACAATAG 57.359 34.615 8.16 0.00 0.00 1.73
3204 3292 7.669722 GGAAATAAGAGGAATATGGCCACAATA 59.330 37.037 8.16 0.00 0.00 1.90
3205 3293 6.494835 GGAAATAAGAGGAATATGGCCACAAT 59.505 38.462 8.16 0.93 0.00 2.71
3206 3294 5.833131 GGAAATAAGAGGAATATGGCCACAA 59.167 40.000 8.16 0.00 0.00 3.33
3207 3295 5.103728 TGGAAATAAGAGGAATATGGCCACA 60.104 40.000 8.16 0.00 0.00 4.17
3208 3296 5.385198 TGGAAATAAGAGGAATATGGCCAC 58.615 41.667 8.16 0.00 0.00 5.01
3209 3297 5.661503 TGGAAATAAGAGGAATATGGCCA 57.338 39.130 8.56 8.56 0.00 5.36
3210 3298 5.105595 GCATGGAAATAAGAGGAATATGGCC 60.106 44.000 0.00 0.00 0.00 5.36
3211 3299 5.105595 GGCATGGAAATAAGAGGAATATGGC 60.106 44.000 0.00 0.00 0.00 4.40
3212 3300 5.420104 GGGCATGGAAATAAGAGGAATATGG 59.580 44.000 0.00 0.00 0.00 2.74
3213 3301 5.420104 GGGGCATGGAAATAAGAGGAATATG 59.580 44.000 0.00 0.00 0.00 1.78
3214 3302 5.076318 TGGGGCATGGAAATAAGAGGAATAT 59.924 40.000 0.00 0.00 0.00 1.28
3215 3303 4.418526 TGGGGCATGGAAATAAGAGGAATA 59.581 41.667 0.00 0.00 0.00 1.75
3216 3304 3.207321 TGGGGCATGGAAATAAGAGGAAT 59.793 43.478 0.00 0.00 0.00 3.01
3479 3567 6.757237 AGTTTGATGTGTTTGCATGGAATAA 58.243 32.000 0.00 0.00 0.00 1.40
3569 3658 6.154445 CACACAAATTGAGCTAAGCTTGATT 58.846 36.000 9.86 0.00 39.88 2.57
3570 3659 5.242393 ACACACAAATTGAGCTAAGCTTGAT 59.758 36.000 9.86 0.00 39.88 2.57
3601 3694 8.298854 TGTACCAGTTATGCGTACGATATAAAT 58.701 33.333 21.65 17.54 36.58 1.40
3749 3842 4.569943 TGCTAACTCGATCTTTTGCTTCT 58.430 39.130 8.59 0.00 0.00 2.85
3792 3885 7.490725 CCACCGCAATTTTGTTTCATATAATGA 59.509 33.333 0.00 0.00 37.55 2.57
3816 3909 8.076910 AGACAACAAAATTCATATAATGGCCA 57.923 30.769 8.56 8.56 0.00 5.36
3982 4295 3.702792 TGGGTTTCTTTGTTTCAGGACA 58.297 40.909 0.00 0.00 0.00 4.02
4107 4420 6.867550 ACAATGTTAGATCGATCTCTGTCAA 58.132 36.000 30.49 16.41 38.32 3.18
4198 4511 1.351017 CAGGTTGTAAGGGCTCTGGAA 59.649 52.381 0.00 0.00 0.00 3.53
4201 4514 0.036732 TGCAGGTTGTAAGGGCTCTG 59.963 55.000 0.00 0.00 0.00 3.35
4279 4593 3.373439 CACAGCAAGGAACTCTTAGCATC 59.627 47.826 0.00 0.00 38.49 3.91
4535 4850 9.988815 AGAACTGCTTATAATATACAGGAACAG 57.011 33.333 0.00 0.00 32.60 3.16
4567 4882 3.328931 ACCAGATGAGTTGACAACATCCT 59.671 43.478 20.08 8.52 40.55 3.24
4833 5148 4.787551 ACCACCTTAACATCTCACACAAA 58.212 39.130 0.00 0.00 0.00 2.83
4875 5190 2.880890 ACTGAAGTTCCACAACAGCATC 59.119 45.455 0.00 0.00 34.60 3.91
4968 5283 7.280876 GGAAGATGTATTTGCATGTTGAGTAGA 59.719 37.037 0.00 0.00 33.35 2.59
4969 5284 7.281774 AGGAAGATGTATTTGCATGTTGAGTAG 59.718 37.037 0.00 0.00 33.35 2.57
5026 5341 9.035607 CCATTGACTCATATGTAGTAAGTGTTC 57.964 37.037 1.90 0.00 0.00 3.18
5033 5348 7.301868 TGATGCCATTGACTCATATGTAGTA 57.698 36.000 1.90 0.00 0.00 1.82
5042 5357 4.196971 CTGATCTTGATGCCATTGACTCA 58.803 43.478 0.00 0.00 0.00 3.41
5049 5364 2.512896 ACTTCCCTGATCTTGATGCCAT 59.487 45.455 0.00 0.00 0.00 4.40
5063 5378 2.971598 CGCATGGGTGGACTTCCCT 61.972 63.158 0.68 0.00 44.84 4.20
5167 5482 4.778958 TGGAACGGAGGGAGTAGAAAATAA 59.221 41.667 0.00 0.00 0.00 1.40
5178 5493 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
5179 5494 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
5180 5495 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
5181 5496 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
5182 5497 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
5183 5498 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
5184 5499 3.065371 GCTGGGTCATCTATTTTGGAACG 59.935 47.826 0.00 0.00 0.00 3.95
5185 5500 4.273318 AGCTGGGTCATCTATTTTGGAAC 58.727 43.478 0.00 0.00 0.00 3.62
5186 5501 4.591321 AGCTGGGTCATCTATTTTGGAA 57.409 40.909 0.00 0.00 0.00 3.53
5187 5502 4.591321 AAGCTGGGTCATCTATTTTGGA 57.409 40.909 0.00 0.00 0.00 3.53
5188 5503 4.706476 TCAAAGCTGGGTCATCTATTTTGG 59.294 41.667 0.00 0.00 0.00 3.28
5189 5504 5.649395 TCTCAAAGCTGGGTCATCTATTTTG 59.351 40.000 0.00 0.00 0.00 2.44
5190 5505 5.819991 TCTCAAAGCTGGGTCATCTATTTT 58.180 37.500 0.00 0.00 0.00 1.82
5191 5506 5.441718 TCTCAAAGCTGGGTCATCTATTT 57.558 39.130 0.00 0.00 0.00 1.40
5192 5507 5.441718 TTCTCAAAGCTGGGTCATCTATT 57.558 39.130 0.00 0.00 0.00 1.73
5193 5508 5.441718 TTTCTCAAAGCTGGGTCATCTAT 57.558 39.130 0.00 0.00 0.00 1.98
5194 5509 4.908601 TTTCTCAAAGCTGGGTCATCTA 57.091 40.909 0.00 0.00 0.00 1.98
5195 5510 3.795688 TTTCTCAAAGCTGGGTCATCT 57.204 42.857 0.00 0.00 0.00 2.90
5196 5511 4.268359 AGATTTCTCAAAGCTGGGTCATC 58.732 43.478 0.00 0.00 35.49 2.92
5197 5512 4.313020 AGATTTCTCAAAGCTGGGTCAT 57.687 40.909 0.00 0.00 35.49 3.06
5198 5513 3.795688 AGATTTCTCAAAGCTGGGTCA 57.204 42.857 0.00 0.00 35.49 4.02
5204 5519 4.816385 TCAAACGACAGATTTCTCAAAGCT 59.184 37.500 0.00 0.00 37.67 3.74
5205 5520 4.906437 GTCAAACGACAGATTTCTCAAAGC 59.094 41.667 0.00 0.00 33.34 3.51
5206 5521 6.292389 AGTCAAACGACAGATTTCTCAAAG 57.708 37.500 0.00 0.00 35.75 2.77
5207 5522 7.518370 GCTTAGTCAAACGACAGATTTCTCAAA 60.518 37.037 0.00 0.00 35.75 2.69
5208 5523 6.073765 GCTTAGTCAAACGACAGATTTCTCAA 60.074 38.462 0.00 0.00 35.75 3.02
5215 5530 3.006967 AGGTGCTTAGTCAAACGACAGAT 59.993 43.478 0.00 0.00 35.75 2.90
5281 5596 8.143835 CCAACAAGAAGTTTGATCCAATAAGTT 58.856 33.333 0.00 0.00 38.74 2.66
5315 5630 6.530120 TCACTAGAATTGTAGAAACCAAGCA 58.470 36.000 16.03 0.00 0.00 3.91
5316 5631 6.651225 ACTCACTAGAATTGTAGAAACCAAGC 59.349 38.462 16.03 0.00 0.00 4.01
5317 5632 7.118390 CCACTCACTAGAATTGTAGAAACCAAG 59.882 40.741 16.03 6.44 0.00 3.61
5318 5633 6.934645 CCACTCACTAGAATTGTAGAAACCAA 59.065 38.462 16.03 0.00 0.00 3.67
5319 5634 6.269077 TCCACTCACTAGAATTGTAGAAACCA 59.731 38.462 16.03 0.00 0.00 3.67
5320 5635 6.698380 TCCACTCACTAGAATTGTAGAAACC 58.302 40.000 16.03 0.00 0.00 3.27
5321 5636 8.779354 ATTCCACTCACTAGAATTGTAGAAAC 57.221 34.615 16.03 0.00 0.00 2.78
5322 5637 8.816894 AGATTCCACTCACTAGAATTGTAGAAA 58.183 33.333 16.03 3.19 30.52 2.52
5323 5638 8.367660 AGATTCCACTCACTAGAATTGTAGAA 57.632 34.615 16.03 3.51 30.52 2.10
5324 5639 7.962995 AGATTCCACTCACTAGAATTGTAGA 57.037 36.000 16.03 0.00 30.52 2.59
5325 5640 9.689976 CATAGATTCCACTCACTAGAATTGTAG 57.310 37.037 8.04 8.04 30.52 2.74
5326 5641 9.421399 TCATAGATTCCACTCACTAGAATTGTA 57.579 33.333 0.00 0.00 30.52 2.41
5327 5642 8.311395 TCATAGATTCCACTCACTAGAATTGT 57.689 34.615 0.00 0.00 30.52 2.71
5356 5690 9.806203 TGCAGGATAATATTTGACAAGATTTTG 57.194 29.630 0.00 0.00 40.24 2.44
5358 5692 9.193806 ACTGCAGGATAATATTTGACAAGATTT 57.806 29.630 19.93 0.00 0.00 2.17
5359 5693 8.757982 ACTGCAGGATAATATTTGACAAGATT 57.242 30.769 19.93 3.67 0.00 2.40
5360 5694 8.757982 AACTGCAGGATAATATTTGACAAGAT 57.242 30.769 19.93 0.00 0.00 2.40
5361 5695 8.461222 CAAACTGCAGGATAATATTTGACAAGA 58.539 33.333 19.93 0.00 0.00 3.02
5362 5696 8.246180 ACAAACTGCAGGATAATATTTGACAAG 58.754 33.333 22.93 4.41 31.59 3.16
5363 5697 8.028354 CACAAACTGCAGGATAATATTTGACAA 58.972 33.333 22.93 0.00 31.59 3.18
5364 5698 7.392953 TCACAAACTGCAGGATAATATTTGACA 59.607 33.333 22.93 10.83 31.59 3.58
5365 5699 7.761409 TCACAAACTGCAGGATAATATTTGAC 58.239 34.615 22.93 0.00 31.59 3.18
5366 5700 7.936496 TCACAAACTGCAGGATAATATTTGA 57.064 32.000 22.93 9.60 31.59 2.69
5367 5701 8.627403 AGATCACAAACTGCAGGATAATATTTG 58.373 33.333 19.93 18.36 0.00 2.32
5368 5702 8.757982 AGATCACAAACTGCAGGATAATATTT 57.242 30.769 19.93 4.47 0.00 1.40
5369 5703 8.757982 AAGATCACAAACTGCAGGATAATATT 57.242 30.769 19.93 4.61 0.00 1.28
5370 5704 9.277783 GTAAGATCACAAACTGCAGGATAATAT 57.722 33.333 19.93 4.60 0.00 1.28
5371 5705 8.264347 TGTAAGATCACAAACTGCAGGATAATA 58.736 33.333 19.93 4.71 0.00 0.98
5372 5706 7.112122 TGTAAGATCACAAACTGCAGGATAAT 58.888 34.615 19.93 3.50 0.00 1.28
5373 5707 6.472016 TGTAAGATCACAAACTGCAGGATAA 58.528 36.000 19.93 0.00 0.00 1.75
5374 5708 6.048732 TGTAAGATCACAAACTGCAGGATA 57.951 37.500 19.93 0.00 0.00 2.59
5375 5709 4.910195 TGTAAGATCACAAACTGCAGGAT 58.090 39.130 19.93 10.41 0.00 3.24
5376 5710 4.350368 TGTAAGATCACAAACTGCAGGA 57.650 40.909 19.93 5.28 0.00 3.86
5388 5722 7.565029 TCAGATTGGAACTCCTATGTAAGATCA 59.435 37.037 0.00 0.00 36.82 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.